title: TF ChIP-seq from whole organism (ENCLB202NWC)

description:
https://www.encodeproject.org/experiments/ENCSR836VAV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR836VAV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR734WSG
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB202NWC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: usp

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to usp

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: ENCBS783OTY at ENCODE; https://www.encodeproject.org/ENCBS783OTY/


title: Control ChIP-seq from whole organism (ENCLB999FYH)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR960AXB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing lz-eGFP fusion proteins.
experiment encode accession: ENCSR960AXB
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB999FYH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain lz-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster lz

value: whole organism

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lz

tag: Sex

tag: dev stage

value: prepupa

tag: age

value: unknown

tag: lab

tag: source

value: Kevin White

tag: fly synchronization stage

value: white prepupa

tag: link

value: ENCBS403RPR at ENCODE; https://www.encodeproject.org/ENCBS403RPR/


title: TF ChIP-seq from whole organism (ENCLB216DBG)

description:
https://www.encodeproject.org/experiments/ENCSR515HRX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG18011-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR515HRX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR402HVI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB216DBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG18011-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG18011

tag: antibody

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18011

value: embryonic

value: 0-24 hour

value: ENCBS779PWH at ENCODE; https://www.encodeproject.org/ENCBS779PWH/


title: Control ChIP-seq from whole organism (ENCLB235LOO)

description:
https://www.encodeproject.org/experiments/ENCSR506NPV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8216-eGFP fusion proteins.
experiment encode accession: ENCSR506NPV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB235LOO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8216-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster spab

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8216

value: 24 day

value: ENCBS915YPJ at ENCODE; https://www.encodeproject.org/ENCBS915YPJ/


title: TF ChIP-seq from whole organism (ENCLB946JLP)

description:
https://www.encodeproject.org/experiments/ENCSR075KVC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against MDL-1 in L4 larva worms.
experiment encode accession: ENCSR075KVC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR534YJS
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB946JLP
fragmentation methods: sonication (generic microtip)

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L4 larva insertion targeting C. elegans mdl-1

extract_protocol: not provided

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS125DHO at ENCODE; https://www.encodeproject.org/ENCBS125DHO/


title: Control ChIP-seq from whole organism (ENCLB244RBK)

description:
https://www.encodeproject.org/experiments/ENCSR655QMD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Chrac-16-eGFP fusion proteins.
experiment encode accession: ENCSR655QMD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB244RBK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Chrac-16-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Chrac-16

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Chrac-16

value: Kevin White, UChicago

value: Kevin White

value: ENCBS547JUV at ENCODE; https://www.encodeproject.org/ENCBS547JUV/


title: Control ChIP-seq from whole organism (ENCLB186AKC)

description:
https://www.encodeproject.org/experiments/ENCSR830XXA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR830XXA
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB186AKC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14710 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG14710

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14710

value: embryonic

value: 0-14 hour

value: ENCBS336RTX at ENCODE; https://www.encodeproject.org/ENCBS336RTX/


title: TF ChIP-seq from whole organism (ENCLB695TSI)

description:
https://www.encodeproject.org/experiments/ENCSR515HRX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG18011-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR515HRX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR402HVI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB695TSI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18011

value: 0-24 hour

value: ENCBS812FSL at ENCODE; https://www.encodeproject.org/ENCBS812FSL/


title: Control ChIP-seq from whole organism (ENCLB981VSL)

description:
https://www.encodeproject.org/experiments/ENCSR506LYS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17186-eGFP fusion proteins.
experiment encode accession: ENCSR506LYS
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB981VSL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17186-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG17186

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17186

value: pooled male and female

value: ENCBS478ZYS at ENCODE; https://www.encodeproject.org/ENCBS478ZYS/


title: Control ChIP-seq from whole organism (ENCLB673NGZ)

description:
https://www.encodeproject.org/experiments/ENCSR827FFL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HmgZ-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR827FFL
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB673NGZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HmgZ mixed sex embryo (4-24 hours) insertion targeting D. melanogaster HmgZ

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgZ

value: ENCBS391ECX at ENCODE; https://www.encodeproject.org/ENCBS391ECX/


title: TF ChIP-seq from whole organism (ENCLB092ZQH)

description:
https://www.encodeproject.org/experiments/ENCSR829XOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14962-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR829XOQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR238IHN
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB092ZQH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14962-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Asciz

value: Asciz

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14962

value: Kevin White, UChicago

value: ENCBS250FFZ at ENCODE; https://www.encodeproject.org/ENCBS250FFZ/


title: Control ChIP-seq from whole organism (ENCLB181KNY)

description:
https://www.encodeproject.org/experiments/ENCSR508AYF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tio-eGFP fusion proteins.
experiment encode accession: ENCSR508AYF
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB181KNY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain tio-GFP mixed sex embryo (4-24 hours) insertion targeting D. melanogaster tio

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tio

value: embryonic

value: Kevin White

value: ENCBS228APS at ENCODE; https://www.encodeproject.org/ENCBS228APS/


title: Control ChIP-seq from whole organism (ENCLB137LBP)

description:
https://www.encodeproject.org/experiments/ENCSR073PON/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 worms.
experiment encode accession: ENCSR073PON
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB137LBP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L4 larva insertion targeting C. elegans ZK546.5

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS677AVX at ENCODE; https://www.encodeproject.org/ENCBS677AVX/


title: Control ChIP-seq from whole organism (ENCLB118CRQ)

description:
https://www.encodeproject.org/experiments/ENCSR505NGD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR505NGD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB118CRQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15696 mixed sex embryo (2-8 hours) insertion targeting D. melanogaster CG15696

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15696

value: pooled male and female

value: ENCBS196PBD at ENCODE; https://www.encodeproject.org/ENCBS196PBD/


title: TF ChIP-seq from whole organism (ENCLB366NOE)

description:
https://www.encodeproject.org/experiments/ENCSR990VZW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lab-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR990VZW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR664OPV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB366NOE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lab-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster lab

value: lab

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lab

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS307JFJ at ENCODE; https://www.encodeproject.org/ENCBS307JFJ/


title: TF ChIP-seq from whole organism (ENCLB163FJM)

description:
https://www.encodeproject.org/experiments/ENCSR821PDI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m-beta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR821PDI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SDA
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB163FJM
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m-beta-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(spl)mbeta-HLH

value: E(spl)mβ-HLH

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Esplm-B

value: embryonic

value: Kevin White

value: ENCBS069BTO at ENCODE; https://www.encodeproject.org/ENCBS069BTO/


title: TF ChIP-seq from whole organism (ENCLB872JUM)

description:
https://www.encodeproject.org/experiments/ENCSR990VZW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lab-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR990VZW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR664OPV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB872JUM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS488ZWX at ENCODE; https://www.encodeproject.org/ENCBS488ZWX/


title: TF ChIP-seq from whole organism (ENCLB688ZQY)

description:
https://www.encodeproject.org/experiments/ENCSR952TDU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing en-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR952TDU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR382DPD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB688ZQY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 3T-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster en

value: en

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to en

value: 0-16 hour

value: ENCBS796RFI at ENCODE; https://www.encodeproject.org/ENCBS796RFI/


title: TF ChIP-seq from whole organism (ENCLB873CJG)

description:
https://www.encodeproject.org/experiments/ENCSR990VZW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lab-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR990VZW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR664OPV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB873CJG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: lab

value: not applicable

value: pooled male and female

value: ENCBS013FLZ at ENCODE; https://www.encodeproject.org/ENCBS013FLZ/


title: TF ChIP-seq from whole organism (ENCLB767SVS)

description:
https://www.encodeproject.org/experiments/ENCSR073QVG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against NHR-12 in L1 larva worms.
experiment encode accession: ENCSR073QVG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR334LDM
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB767SVS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP318 (unc-119(ed3) III; wgIs318) mixed sex L1 larva insertion targeting C. elegans nhr-12

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-12

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS523NST at ENCODE; https://www.encodeproject.org/ENCBS523NST/


title: TF ChIP-seq from whole organism (ENCLB680TQX)

description:
https://www.encodeproject.org/experiments/ENCSR821PDI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m-beta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR821PDI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SDA
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB680TQX
size range: 200-800

value: E(spl)mβ-HLH

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Esplm-B

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS315GED at ENCODE; https://www.encodeproject.org/ENCBS315GED/


title: Control ChIP-seq from whole organism (ENCLB003CWM)

description:
https://www.encodeproject.org/experiments/ENCSR656YMX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG4424-eGFP fusion proteins.
experiment encode accession: ENCSR656YMX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB003CWM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4424-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG4424

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4424

value: 0-16 hour

value: ENCBS561PPQ at ENCODE; https://www.encodeproject.org/ENCBS561PPQ/


title: TF ChIP-seq from whole organism (ENCLB557PGK)

description:
https://www.encodeproject.org/experiments/ENCSR507PVB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17568-eGFP fusion proteins.
experiment encode accession: ENCSR507PVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR478KQW
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB557PGK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17568-GFP mixed sex embryo (0-20 hours) insertion targeting D. melanogaster CG17568

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17568

value: pooled male and female

value: 0-20 hour

value: ENCBS774KXI at ENCODE; https://www.encodeproject.org/ENCBS774KXI/


title: TF ChIP-seq from whole organism (ENCLB553RNJ)

description:
https://www.encodeproject.org/experiments/ENCSR498KAT/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fd102C-eGFP fusion proteins.
experiment encode accession: ENCSR498KAT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860ZFH
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB553RNJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd102C-GFP mixed sex embryo (2-6 hours) insertion targeting D. melanogaster fd102C

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd102C

value: ENCBS919JVF at ENCODE; https://www.encodeproject.org/ENCBS919JVF/


title: TF ChIP-seq from whole organism (ENCLB883LLY)

description:
https://www.encodeproject.org/experiments/ENCSR072IOU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L3 larva worms.
experiment encode accession: ENCSR072IOU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056ZSZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB883LLY
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L3 larva insertion targeting C. elegans nhr-28

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS855KKT at ENCODE; https://www.encodeproject.org/ENCBS855KKT/


title: TF ChIP-seq from whole organism (ENCLB075FAR)

description:
https://www.encodeproject.org/experiments/ENCSR073QVG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against NHR-12 in L1 larva worms.
experiment encode accession: ENCSR073QVG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR334LDM
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB075FAR
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-12

value: L1 larva

value: Michael Snyder

value: ENCBS175LFI at ENCODE; https://www.encodeproject.org/ENCBS175LFI/


title: TF ChIP-seq from whole organism (ENCLB289MHG)

description:
https://www.encodeproject.org/experiments/ENCSR949XGL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR949XGL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR157EWZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB289MHG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain chif-RA-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster chif

value: chif

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif-RA

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS089QVG at ENCODE; https://www.encodeproject.org/ENCBS089QVG/


title: TF ChIP-seq from whole organism (ENCLB568ETR)

description:
https://www.encodeproject.org/experiments/ENCSR949XGL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR949XGL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR157EWZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB568ETR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: pooled male and female

value: ENCBS271GUF at ENCODE; https://www.encodeproject.org/ENCBS271GUF/


title: Control ChIP-seq from whole organism (ENCLB390QXY)

description:
https://www.encodeproject.org/experiments/ENCSR825QUN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8159-eGFP fusion proteins.
experiment encode accession: ENCSR825QUN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB390QXY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex pupa (24 hours) insertion targeting D. melanogaster CG8159

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8159

value: pupa

value: 24 hour

value: ENCBS825USY at ENCODE; https://www.encodeproject.org/ENCBS825USY/


title: TF ChIP-seq from whole organism (ENCLB053KDL)

description:
https://www.encodeproject.org/experiments/ENCSR248ONR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L3 larva worms.
experiment encode accession: ENCSR248ONR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR224FXO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB053KDL
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L3 larva insertion targeting C. elegans mdl-1

value: whole organism

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS123HSJ at ENCODE; https://www.encodeproject.org/ENCBS123HSJ/


title: Control ChIP-seq from whole organism (ENCLB974RFN)

description:
https://www.encodeproject.org/experiments/ENCSR955GGX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9305-eGFP fusion proteins.
experiment encode accession: ENCSR955GGX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB974RFN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9305-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Bdp1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9305

value: embryonic

value: 0-24 hour

value: ENCBS147KYX at ENCODE; https://www.encodeproject.org/ENCBS147KYX/


title: TF ChIP-seq from whole organism (ENCLB861BZV)

description:
https://www.encodeproject.org/experiments/ENCSR497FYG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR497FYG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR754WSC
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB861BZV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain EcR-GFP mixed sex pupa (24 hours) whole organism stably expressing C-terminal eGFP-tagged EcR

value: EcR

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to EcR

value: pooled male and female

value: Kevin White, UChicago

value: Kevin White

value: ENCBS807AXU at ENCODE; https://www.encodeproject.org/ENCBS807AXU/


title: TF ChIP-seq from whole organism (ENCLB104WWD)

description:
https://www.encodeproject.org/experiments/ENCSR492KRE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492KRE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR920WNJ
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB104WWD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain insv-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster insv

value: insv

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: ENCBS365SXK at ENCODE; https://www.encodeproject.org/ENCBS365SXK/


title: TF ChIP-seq from whole organism (ENCLB248EKP)

description:
https://www.encodeproject.org/experiments/ENCSR776AVR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7786-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR776AVR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR841LDV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB248EKP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7786-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG7786

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7786

value: ENCBS577PUR at ENCODE; https://www.encodeproject.org/ENCBS577PUR/


title: TF ChIP-seq from whole organism (ENCLB754XFU)

description:
https://www.encodeproject.org/experiments/ENCSR821PDI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m-beta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR821PDI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SDA
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB754XFU
size range: 200-800

value: E(spl)mβ-HLH

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Esplm-B

value: ENCBS634IIQ at ENCODE; https://www.encodeproject.org/ENCBS634IIQ/


title: TF ChIP-seq from whole organism (ENCLB028WYP)

description:
https://www.encodeproject.org/experiments/ENCSR952TDU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing en-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR952TDU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR382DPD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB028WYP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: en

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to en

value: embryonic

value: 0-16 hour

value: ENCBS137IPE at ENCODE; https://www.encodeproject.org/ENCBS137IPE/


title: Control ChIP-seq from whole organism (ENCLB655TYQ)

description:
https://www.encodeproject.org/experiments/ENCSR073PON/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 worms.
experiment encode accession: ENCSR073PON
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB655TYQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L4 larva insertion targeting C. elegans ZK546.5

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS744XIX at ENCODE; https://www.encodeproject.org/ENCBS744XIX/


title: TF ChIP-seq from whole organism (ENCLB640DWX)

description:
https://www.encodeproject.org/experiments/ENCSR950LBC/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12744-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR950LBC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR075LYH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB640DWX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12744-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG12744

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12744

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS214WZT at ENCODE; https://www.encodeproject.org/ENCBS214WZT/


title: TF ChIP-seq from whole organism (ENCLB399KUI)

description:
https://www.encodeproject.org/experiments/ENCSR949XGL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR949XGL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR157EWZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB399KUI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: chif

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif-RA

value: embryonic

value: ENCBS589PYZ at ENCODE; https://www.encodeproject.org/ENCBS589PYZ/


title: TF ChIP-seq from whole organism (ENCLB617PTO)

description:
https://www.encodeproject.org/experiments/ENCSR492FKR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Blimp-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492FKR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR772SBK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB617PTO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Blimp-1-GFP mixed sex prepupa insertion targeting D. melanogaster Blimp-1

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Blimp-1

value: pooled male and female

value: prepupa

value: ENCBS309EHN at ENCODE; https://www.encodeproject.org/ENCBS309EHN/


title: TF ChIP-seq from whole organism (ENCLB909EWU)

description:
https://www.encodeproject.org/experiments/ENCSR492FKR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Blimp-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492FKR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR772SBK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB909EWU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: unknown

value: ENCBS587USY at ENCODE; https://www.encodeproject.org/ENCBS587USY/


title: TF ChIP-seq from whole organism (ENCLB467PHK)

description:
https://www.encodeproject.org/experiments/ENCSR492FKR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Blimp-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492FKR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR772SBK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB467PHK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS873VWT at ENCODE; https://www.encodeproject.org/ENCBS873VWT/


title: Control ChIP-seq from whole organism (ENCLB267MXR)

description:
https://www.encodeproject.org/experiments/ENCSR499HRQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing D19B-eGFP fusion proteins.
experiment encode accession: ENCSR499HRQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB267MXR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain D19B-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster D19B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D19B

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS481XTZ at ENCODE; https://www.encodeproject.org/ENCBS481XTZ/


title: TF ChIP-seq from whole organism (ENCLB415WVF)

description:
https://www.encodeproject.org/experiments/ENCSR185NLT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-aha-1 in L4 larva worms.
experiment encode accession: ENCSR185NLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR244KIK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB415WVF
size range: 150-350

source_name: Caenorhabditis elegans strain OP124 (unc-119(ed3) III; wgIs124) mixed sex L4 larva insertion targeting C. elegans aha-1

value: not applicable

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS255OST at ENCODE; https://www.encodeproject.org/ENCBS255OST/


title: TF ChIP-seq from whole organism (ENCLB220DXO)

description:
https://www.encodeproject.org/experiments/ENCSR498KAT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fd102C-eGFP fusion proteins.
experiment encode accession: ENCSR498KAT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860ZFH
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB220DXO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd102C

value: embryonic

value: Kevin White

value: ENCBS236PPR at ENCODE; https://www.encodeproject.org/ENCBS236PPR/


title: TF ChIP-seq from whole organism (ENCLB908MJY)

description:
https://www.encodeproject.org/experiments/ENCSR072IOU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L3 larva worms.
experiment encode accession: ENCSR072IOU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056ZSZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB908MJY
size range: 150-350

value: pooled male and female

value: L3 larva

value: unknown

value: ENCBS940DKU at ENCODE; https://www.encodeproject.org/ENCBS940DKU/


title: TF ChIP-seq from whole organism (ENCLB751HLJ)

description:
https://www.encodeproject.org/experiments/ENCSR248ONR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L3 larva worms.
experiment encode accession: ENCSR248ONR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR224FXO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB751HLJ
size range: 150-350

value: whole organism

value: ENCBS846GPT at ENCODE; https://www.encodeproject.org/ENCBS846GPT/


title: TF ChIP-seq from whole organism (ENCLB846OUQ)

description:
https://www.encodeproject.org/experiments/ENCSR497FYG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR497FYG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR754WSC
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB846OUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: EcR

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to EcR

value: pupa

value: 24 hour

value: Kevin White, UChicago

value: ENCBS090WSA at ENCODE; https://www.encodeproject.org/ENCBS090WSA/


title: TF ChIP-seq from whole organism (ENCLB973KFV)

description:
https://www.encodeproject.org/experiments/ENCSR497FYG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR497FYG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR754WSC
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB973KFV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: ENCBS393EQR at ENCODE; https://www.encodeproject.org/ENCBS393EQR/


title: TF ChIP-seq from whole organism (ENCLB699VSY)

description:
https://www.encodeproject.org/experiments/ENCSR946VDB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing jumu-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946VDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR159LNW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB699VSY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain jumu-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster jumu

value: jumu

value: D. mel line contraining an intronic eGFP exon to create a jumu-GFP fusion gene

value: embryonic

value: 0-24 hour

value: Hugo Bellen

value: ENCBS723ZTT at ENCODE; https://www.encodeproject.org/ENCBS723ZTT/


title: TF ChIP-seq from whole organism (ENCLB712LLG)

description:
https://www.encodeproject.org/experiments/ENCSR246PQU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-30-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR246PQU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR113XNT
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB712LLG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite L4 larva insertion targeting C. elegans hlh-30

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS036PKR at ENCODE; https://www.encodeproject.org/ENCBS036PKR/


title: Control ChIP-seq from whole organism (ENCLB113YSN)

description:
https://www.encodeproject.org/experiments/ENCSR981YAA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing twi-eGFP fusion proteins.
experiment encode accession: ENCSR981YAA
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB113YSN
size range: 200-800

source_name: Drosophila melanogaster strain twi mixed sex embryo (2-12 hours) insertion targeting D. melanogaster twi

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to twi

value: pooled male and female

value: Kevin White, UChicago

value: Kevin White

value: ENCBS934MZM at ENCODE; https://www.encodeproject.org/ENCBS934MZM/


title: Control ChIP-seq from whole organism (ENCLB282CFK)

description:
https://www.encodeproject.org/experiments/ENCSR247VJA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR247VJA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB282CFK
size range: 150-350

source_name: Caenorhabditis elegans strain OP130 (unc-119(ed3) III; wgIs130) mixed sex L2 larva insertion targeting C. elegans sma-9

value: not applicable

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS707FXG at ENCODE; https://www.encodeproject.org/ENCBS707FXG/


title: Control ChIP-seq from whole organism (ENCLB257EMX)

description:
https://www.encodeproject.org/experiments/ENCSR497DLP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing caup-eGFP fusion proteins.
experiment encode accession: ENCSR497DLP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB257EMX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain caup-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster caup

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to caup

value: embryonic

value: 0-24 hour

value: ENCBS422LDE at ENCODE; https://www.encodeproject.org/ENCBS422LDE/


title: Control ChIP-seq from whole organism (ENCLB349IOY)

description:
https://www.encodeproject.org/experiments/ENCSR247VJA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR247VJA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB349IOY
size range: 150-350

value: unknown

value: ENCBS861RZG at ENCODE; https://www.encodeproject.org/ENCBS861RZG/


title: Control ChIP-seq from whole organism (ENCLB671VZF)

description:
https://www.encodeproject.org/experiments/ENCSR450VEA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dl-eGFP fusion proteins.
experiment encode accession: ENCSR450VEA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-09-28
lab: Kevin White, UChicago
library encode accession: ENCLB671VZF
fragmentation methods: sonication (Bioruptor generic)
size range: 175-225

source_name: Drosophila melanogaster strain dl-large-GFP wandering third instar larva insertion targeting D. melanogaster dl

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dl-RD

value: not collected

value: wandering third instar larva

value: ENCBS798EVU at ENCODE; https://www.encodeproject.org/ENCBS798EVU/


title: TF ChIP-seq from whole organism (ENCLB000NUE)

description:
https://www.encodeproject.org/experiments/ENCSR492KRE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492KRE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR920WNJ
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB000NUE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: insv

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: pooled male and female

value: Kevin White, UChicago

value: Kevin White

value: ENCBS476NTL at ENCODE; https://www.encodeproject.org/ENCBS476NTL/


title: Control ChIP-seq from whole organism (ENCLB212BXZ)

description:
https://www.encodeproject.org/experiments/ENCSR981IYC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR981IYC
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB212BXZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain unpg-GFP embryo (4-16 hours) insertion targeting D. melanogaster unpg

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to unpg

value: embryonic

value: ENCBS022ECB at ENCODE; https://www.encodeproject.org/ENCBS022ECB/


title: Control ChIP-seq from whole organism (ENCLB555NXN)

description:
https://www.encodeproject.org/experiments/ENCSR489LXY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing snoo-eGFP fusion proteins.
experiment encode accession: ENCSR489LXY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB555NXN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain snoo-MiMIC mixed sex pupa insertion targeting D. melanogaster Snoo

value: D. mel line contraining an intronic eGFP exon to create a snoo-GFP fusion gene

value: pupa

value: unknown

value: Hugo Bellen

value: ENCBS785IRG at ENCODE; https://www.encodeproject.org/ENCBS785IRG/


title: TF ChIP-seq from whole organism (ENCLB466WZW)

description:
https://www.encodeproject.org/experiments/ENCSR776AVR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7786-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR776AVR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR841LDV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB466WZW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7786

value: 0-24 hour

value: ENCBS556OUZ at ENCODE; https://www.encodeproject.org/ENCBS556OUZ/


title: TF ChIP-seq from whole organism (ENCLB615DXF)

description:
https://www.encodeproject.org/experiments/ENCSR185NLT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-aha-1 in L4 larva worms.
experiment encode accession: ENCSR185NLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR244KIK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB615DXF
size range: 150-350

value: not applicable

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS601ZKO at ENCODE; https://www.encodeproject.org/ENCBS601ZKO/


title: Control ChIP-seq from whole organism (ENCLB202BHA)

description:
https://www.encodeproject.org/experiments/ENCSR946VOY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CHES-1-like-eGFP fusion proteins.
experiment encode accession: ENCSR946VOY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB202BHA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CHES-1-like-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CHES-1-like

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CHES-1-like

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS660KUC at ENCODE; https://www.encodeproject.org/ENCBS660KUC/


title: TF ChIP-seq from whole organism (ENCLB921OAS)

description:
https://www.encodeproject.org/experiments/ENCSR485XWP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1529-eGFP fusion proteins.
experiment encode accession: ENCSR485XWP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SOX
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB921OAS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1529-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG1529

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1529

value: 0-14 hour

value: ENCBS730EVH at ENCODE; https://www.encodeproject.org/ENCBS730EVH/


title: TF ChIP-seq from whole organism (ENCLB210DLY)

description:
https://www.encodeproject.org/experiments/ENCSR485XWP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1529-eGFP fusion proteins.
experiment encode accession: ENCSR485XWP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SOX
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB210DLY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS934OXG at ENCODE; https://www.encodeproject.org/ENCBS934OXG/


title: Control ChIP-seq from whole organism (ENCLB993CQP)

description:
https://www.encodeproject.org/experiments/ENCSR185LPO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR185LPO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB993CQP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L1 larva insertion targeting C. elegans pqm-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: L1 larva

value: unknown

value: Michael Snyder

value: ENCBS655ZMD at ENCODE; https://www.encodeproject.org/ENCBS655ZMD/


title: Control ChIP-seq from whole organism (ENCLB060MFS)

description:
https://www.encodeproject.org/experiments/ENCSR490YPO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15011-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR490YPO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB060MFS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15011-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG15011

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15011

value: pooled male and female

value: 0-24 hour

value: ENCBS721HPX at ENCODE; https://www.encodeproject.org/ENCBS721HPX/


title: TF ChIP-seq from whole organism (ENCLB187TWO)

description:
https://www.encodeproject.org/experiments/ENCSR492KRE/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR492KRE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR920WNJ
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB187TWO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain insv-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster insv

value: insv

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS224OXT at ENCODE; https://www.encodeproject.org/ENCBS224OXT/


title: TF ChIP-seq from whole organism (ENCLB390UOM)

description:
https://www.encodeproject.org/experiments/ENCSR810MLF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17829-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR810MLF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR130GIJ
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB390UOM
size range: 200-800

source_name: Drosophila melanogaster strain CG17829 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG17829

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17829

value: ENCBS057UQC at ENCODE; https://www.encodeproject.org/ENCBS057UQC/


title: TF ChIP-seq from whole organism (ENCLB743NCP)

description:
https://www.encodeproject.org/experiments/ENCSR946VDB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing jumu-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946VDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR159LNW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB743NCP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: jumu

value: D. mel line contraining an intronic eGFP exon to create a jumu-GFP fusion gene

value: Hugo Bellen

value: ENCBS853TSW at ENCODE; https://www.encodeproject.org/ENCBS853TSW/


title: TF ChIP-seq from whole organism (ENCLB121SFU)

description:
https://www.encodeproject.org/experiments/ENCSR246NYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-elt-1 in L3 larva worms.
experiment encode accession: ENCSR246NYI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR744IWP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB121SFU
size range: 150-350

source_name: Caenorhabditis elegans strain OP354 (unc-119(tm4063) III; wgIs354) mixed sex L3 larva insertion targeting C. elegans elt-1

value: whole organism

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS967IWN at ENCODE; https://www.encodeproject.org/ENCBS967IWN/


title: TF ChIP-seq from whole organism (ENCLB014WBP)

description:
https://www.encodeproject.org/experiments/ENCSR484ZCC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15269-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR484ZCC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR076KHT
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB014WBP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (6-18 hours) insertion targeting D. melanogaster CG15269

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15269

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS371AZQ at ENCODE; https://www.encodeproject.org/ENCBS371AZQ/


title: Control ChIP-seq from whole organism (ENCLB592EVK)

description:
https://www.encodeproject.org/experiments/ENCSR488SGR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR488SGR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB592EVK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Fer3 embryo (6-24 hours) insertion targeting D. melanogaster Fer3

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer3

value: not collected

value: ENCBS957CRL at ENCODE; https://www.encodeproject.org/ENCBS957CRL/


title: TF ChIP-seq from whole organism (ENCLB965GAN)

description:
https://www.encodeproject.org/experiments/ENCSR946VDB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing jumu-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946VDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR159LNW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB965GAN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain jumu-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster jumu

value: jumu

value: whole organism

value: D. mel line contraining an intronic eGFP exon to create a jumu-GFP fusion gene

value: 0-24 hour

value: Hugo Bellen

value: ENCBS885IZE at ENCODE; https://www.encodeproject.org/ENCBS885IZE/


title: TF ChIP-seq from whole organism (ENCLB903WHS)

description:
https://www.encodeproject.org/experiments/ENCSR483VVZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12391-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR483VVZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR843PNA
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB903WHS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG12391

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12391

value: pooled male and female

value: ENCBS635SBN at ENCODE; https://www.encodeproject.org/ENCBS635SBN/


title: TF ChIP-seq from whole organism (ENCLB487LQV)

description:
https://www.encodeproject.org/experiments/ENCSR246PQU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-30-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR246PQU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR113XNT
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB487LQV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite L4 larva insertion targeting C. elegans hlh-30

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS574JIA at ENCODE; https://www.encodeproject.org/ENCBS574JIA/


title: TF ChIP-seq from whole organism (ENCLB708AZN)

description:
https://www.encodeproject.org/experiments/ENCSR486EQS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing org-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR486EQS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR553YUJ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB708AZN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain org-1-GFP mixed sex embryo (2-24 hours) insertion targeting D. melanogaster org-1

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to org-1

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS290CGH at ENCODE; https://www.encodeproject.org/ENCBS290CGH/


title: TF ChIP-seq from whole organism (ENCLB601BRR)

description:
https://www.encodeproject.org/experiments/ENCSR445WCZ/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR445WCZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR272JEI
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB601BRR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain psq-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster psq

value: psq

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: 0-24 hour

value: ENCBS069WAU at ENCODE; https://www.encodeproject.org/ENCBS069WAU/


title: TF ChIP-seq from whole organism (ENCLB039FWC)

description:
https://www.encodeproject.org/experiments/ENCSR945XEH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR945XEH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR625AVD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB039FWC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pif1A-GFP mixed sex pupa insertion targeting D. melanogaster Pif1A

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1A

value: pooled male and female

value: pupa

value: ENCBS777HZJ at ENCODE; https://www.encodeproject.org/ENCBS777HZJ/


title: TF ChIP-seq from whole organism (ENCLB962IPV)

description:
https://www.encodeproject.org/experiments/ENCSR486EQS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing org-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR486EQS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR553YUJ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB962IPV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS050TGO at ENCODE; https://www.encodeproject.org/ENCBS050TGO/


title: Control ChIP-seq from whole organism (ENCLB912FWO)

description:
https://www.encodeproject.org/experiments/ENCSR185LPO/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR185LPO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB912FWO
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS407KCW at ENCODE; https://www.encodeproject.org/ENCBS407KCW/


title: Control ChIP-seq from whole organism (ENCLB612JVW)

description:
https://www.encodeproject.org/experiments/ENCSR808XII/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10979-eGFP fusion proteins.
experiment encode accession: ENCSR808XII
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB612JVW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG10979

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10979

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS133DGP at ENCODE; https://www.encodeproject.org/ENCBS133DGP/


title: Control ChIP-seq from whole organism (ENCLB604XCW)

description:
https://www.encodeproject.org/experiments/ENCSR185LPO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR185LPO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB604XCW
fragmentation methods: sonication (generic microtip)

value: whole organism

value: pooled male and female

value: ENCBS012AIZ at ENCODE; https://www.encodeproject.org/ENCBS012AIZ/


title: TF ChIP-seq from whole organism (ENCLB645QWH)

description:
https://www.encodeproject.org/experiments/ENCSR946EAE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946EAE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR596CGO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB645QWH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pb-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pb

value: pb

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pb

value: 0-24 hour

value: ENCBS900MGR at ENCODE; https://www.encodeproject.org/ENCBS900MGR/


title: TF ChIP-seq from whole organism (ENCLB709HUA)

description:
https://www.encodeproject.org/experiments/ENCSR485XWP/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1529-eGFP fusion proteins.
experiment encode accession: ENCSR485XWP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR072SOX
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB709HUA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1529

value: ENCBS521KFO at ENCODE; https://www.encodeproject.org/ENCBS521KFO/


title: TF ChIP-seq from whole organism (ENCLB548BXR)

description:
https://www.encodeproject.org/experiments/ENCSR946EAE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946EAE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR596CGO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB548BXR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS435UGZ at ENCODE; https://www.encodeproject.org/ENCBS435UGZ/


title: Control ChIP-seq from whole organism (ENCLB989EOG)

description:
https://www.encodeproject.org/experiments/ENCSR478KQW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17568-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR478KQW
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB989EOG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17568-GFP mixed sex embryo (0-20 hours) insertion targeting D. melanogaster CG17568

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17568

value: embryonic

value: 0-20 hour

value: ENCBS085CXA at ENCODE; https://www.encodeproject.org/ENCBS085CXA/


title: TF ChIP-seq from whole organism (ENCLB403LYC)

description:
https://www.encodeproject.org/experiments/ENCSR810MLF/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17829-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR810MLF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR130GIJ
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB403LYC
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17829

value: Kevin White, UChicago

value: Kevin White

value: ENCBS140DPF at ENCODE; https://www.encodeproject.org/ENCBS140DPF/


title: TF ChIP-seq from whole organism (ENCLB128JOX)

description:
https://www.encodeproject.org/experiments/ENCSR946EAE/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946EAE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR596CGO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB128JOX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pb

value: whole organism

value: pooled male and female

value: ENCBS939ITP at ENCODE; https://www.encodeproject.org/ENCBS939ITP/


title: Control ChIP-seq from whole organism (ENCLB147TLK)

description:
https://www.encodeproject.org/experiments/ENCSR477RDG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Ets96B-eGFP fusion proteins.
experiment encode accession: ENCSR477RDG
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB147TLK
size range: 200-800

source_name: Drosophila melanogaster strain Ets96B mixed sex prepupa (24 hours) insertion targeting D. melanogaster Ets96B

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets96B

value: prepupa

value: 24 hour

value: ENCBS354DSU at ENCODE; https://www.encodeproject.org/ENCBS354DSU/


title: Control ChIP-seq from whole organism (ENCLB520UGW)

description:
https://www.encodeproject.org/experiments/ENCSR067SKF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR067SKF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB520UGW
size range: 150-350

source_name: Caenorhabditis elegans strain OP43 (unc-119(ed3) III; wgIs43) mixed sex L2 larva insertion targeting C. elegans nhr-23

value: not applicable

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS544YQM at ENCODE; https://www.encodeproject.org/ENCBS544YQM/


title: TF ChIP-seq from whole organism (ENCLB771TEM)

description:
https://www.encodeproject.org/experiments/ENCSR443MIN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing tai-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR443MIN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR849VNO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB771TEM
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain tai-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster tai

value: tai

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tai

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS796XUC at ENCODE; https://www.encodeproject.org/ENCBS796XUC/


title: TF ChIP-seq from whole organism (ENCLB867HWW)

description:
https://www.encodeproject.org/experiments/ENCSR445WCZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR445WCZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR272JEI
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB867HWW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: psq

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS521SHW at ENCODE; https://www.encodeproject.org/ENCBS521SHW/


title: TF ChIP-seq from whole organism (ENCLB500BOD)

description:
https://www.encodeproject.org/experiments/ENCSR978WWC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7045-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR978WWC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR278PHU
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB500BOD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7045-GFP male adult insertion targeting D. melanogaster tHMG1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7045

value: male

value: adult

value: unknown

value: ENCBS438CHS at ENCODE; https://www.encodeproject.org/ENCBS438CHS/


title: Control ChIP-seq from whole organism (ENCLB789DZJ)

description:
https://www.encodeproject.org/experiments/ENCSR067VBO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR067VBO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB789DZJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP425 (unc-119(tm4063) III; wgIs425) mixed sex L2 larva insertion targeting C. elegans crh-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C27D6.4

value: L2 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS676OAF at ENCODE; https://www.encodeproject.org/ENCBS676OAF/


title: TF ChIP-seq from whole organism (ENCLB785GFM)

description:
https://www.encodeproject.org/experiments/ENCSR246NYI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-elt-1 in L3 larva worms.
experiment encode accession: ENCSR246NYI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR744IWP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB785GFM
size range: 150-350

source_name: Caenorhabditis elegans strain OP354 (unc-119(tm4063) III; wgIs354) mixed sex L3 larva insertion targeting C. elegans elt-1

value: whole organism

value: whole organisms

value: L3 larva

value: CGC

value: ENCBS289FQA at ENCODE; https://www.encodeproject.org/ENCBS289FQA/


title: TF ChIP-seq from whole organism (ENCLB576PBQ)

description:
https://www.encodeproject.org/experiments/ENCSR484ZCC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15269-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR484ZCC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR076KHT
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB576PBQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (6-18 hours) insertion targeting D. melanogaster CG15269

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15269

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS076TPG at ENCODE; https://www.encodeproject.org/ENCBS076TPG/


title: TF ChIP-seq from whole organism (ENCLB317PSZ)

description:
https://www.encodeproject.org/experiments/ENCSR483VVZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12391-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR483VVZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR843PNA
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB317PSZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12391

value: 0-24 hour

value: ENCBS631HOA at ENCODE; https://www.encodeproject.org/ENCBS631HOA/


title: TF ChIP-seq from whole organism (ENCLB680AZA)

description:
https://www.encodeproject.org/experiments/ENCSR945XEH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR945XEH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR625AVD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB680AZA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1A

value: pupa

value: unknown

value: ENCBS498KYM at ENCODE; https://www.encodeproject.org/ENCBS498KYM/


title: TF ChIP-seq from whole organism (ENCLB301LKO)

description:
https://www.encodeproject.org/experiments/ENCSR483VVZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12391-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR483VVZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR843PNA
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB301LKO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS140ZSQ at ENCODE; https://www.encodeproject.org/ENCBS140ZSQ/


title: TF ChIP-seq from whole organism (ENCLB908QGA)

description:
https://www.encodeproject.org/experiments/ENCSR769SFV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Bab2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR769SFV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR537BJC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB908QGA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bab2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster bab2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bab2

value: ENCBS397LIJ at ENCODE; https://www.encodeproject.org/ENCBS397LIJ/


title: Control ChIP-seq from whole organism (ENCLB947PZH)

description:
https://www.encodeproject.org/experiments/ENCSR067VBO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR067VBO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB947PZH
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C27D6.4

value: pooled male and female

value: L2 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS090GFE at ENCODE; https://www.encodeproject.org/ENCBS090GFE/


title: Control ChIP-seq from whole organism (ENCLB726HZW)

description:
https://www.encodeproject.org/experiments/ENCSR481GXM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Usf-eGFP fusion proteins.
experiment encode accession: ENCSR481GXM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB726HZW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Usf-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Usf

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Usf

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS560CYR at ENCODE; https://www.encodeproject.org/ENCBS560CYR/


title: Control ChIP-seq from whole organism (ENCLB196GNZ)

description:
https://www.encodeproject.org/experiments/ENCSR067SKF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR067SKF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB196GNZ
size range: 150-350

value: whole organism

value: whole organisms

value: unknown

value: CGC

value: ENCBS421BJN at ENCODE; https://www.encodeproject.org/ENCBS421BJN/


title: TF ChIP-seq from whole organism (ENCLB701DAZ)

description:
https://www.encodeproject.org/experiments/ENCSR945XEH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR945XEH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR625AVD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB701DAZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1A

value: pooled male and female

value: pupa

value: ENCBS541BWI at ENCODE; https://www.encodeproject.org/ENCBS541BWI/


title: TF ChIP-seq from whole organism (ENCLB470NWP)

description:
https://www.encodeproject.org/experiments/ENCSR769SFV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Bab2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR769SFV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR537BJC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB470NWP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bab2

value: 0-24 hour

value: ENCBS089YOF at ENCODE; https://www.encodeproject.org/ENCBS089YOF/


title: TF ChIP-seq from whole organism (ENCLB194KFH)

description:
https://www.encodeproject.org/experiments/ENCSR067JIV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L4 larva worms.
experiment encode accession: ENCSR067JIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR916UPC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB194KFH
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L4 larva insertion targeting C. elegans nhr-11

value: not applicable

value: L4 larva

value: Michael Snyder, Stanford

value: ENCBS901RES at ENCODE; https://www.encodeproject.org/ENCBS901RES/


title: Control ChIP-seq from whole organism (ENCLB985ENL)

description:
https://www.encodeproject.org/experiments/ENCSR674PHY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing bcd-eGFP fusion proteins.
experiment encode accession: ENCSR674PHY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB985ENL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 1T-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster bcd

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to bcd

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS877VDD at ENCODE; https://www.encodeproject.org/ENCBS877VDD/


title: TF ChIP-seq from whole organism (ENCLB289SPH)

description:
https://www.encodeproject.org/experiments/ENCSR764LDS/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8089-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR764LDS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR562KLY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB289SPH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8089-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG8089

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8089

value: ENCBS299OWN at ENCODE; https://www.encodeproject.org/ENCBS299OWN/


title: TF ChIP-seq from whole organism (ENCLB729IIC)

description:
https://www.encodeproject.org/experiments/ENCSR443MIN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing tai-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR443MIN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR849VNO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB729IIC
fragmentation methods: sonication (Bioruptor generic)

value: tai

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tai

value: pooled male and female

value: wandering third instar larva

value: unknown

value: ENCBS723KXG at ENCODE; https://www.encodeproject.org/ENCBS723KXG/


title: TF ChIP-seq from whole organism (ENCLB529JVU)

description:
https://www.encodeproject.org/experiments/ENCSR673MPB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3032-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673MPB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR409KGR
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB529JVU
size range: 200-800

source_name: Drosophila melanogaster strain CG3032 mixed sex prepupa (24 hours) insertion targeting D. melanogaster CG3032

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3032

value: prepupa

value: 24 hour

value: ENCBS209YGI at ENCODE; https://www.encodeproject.org/ENCBS209YGI/


title: TF ChIP-seq from whole organism (ENCLB312LHJ)

description:
https://www.encodeproject.org/experiments/ENCSR764LDS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8089-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR764LDS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR562KLY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB312LHJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS370AUO at ENCODE; https://www.encodeproject.org/ENCBS370AUO/


title: Control ChIP-seq from whole organism (ENCLB876ZGV)

description:
https://www.encodeproject.org/experiments/ENCSR978EBX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR978EBX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-01-31
lab: Kevin White, UChicago
library encode accession: ENCLB876ZGV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Spps embryo (0-12 hours) insertion targeting D. melanogaster Spps

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Spps

value: not collected

value: 0-12 hour

value: ENCBS818HAW at ENCODE; https://www.encodeproject.org/ENCBS818HAW/


title: Control ChIP-seq from whole organism (ENCLB094FIR)

description:
https://www.encodeproject.org/experiments/ENCSR480YPK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR480YPK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB094FIR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Stat92E-GFP mixed sex embryo (0-12 hours) whole organism stably expressing C-terminal eGFP-tagged Stat92E

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Stat92E

value: pooled male and female

value: ENCBS157LEK at ENCODE; https://www.encodeproject.org/ENCBS157LEK/


title: TF ChIP-seq from whole organism (ENCLB554OAR)

description:
https://www.encodeproject.org/experiments/ENCSR673MPB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3032-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673MPB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR409KGR
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB554OAR
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3032

value: prepupa

value: ENCBS748BTD at ENCODE; https://www.encodeproject.org/ENCBS748BTD/


title: TF ChIP-seq from whole organism (ENCLB098UTA)

description:
https://www.encodeproject.org/experiments/ENCSR067JIV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L4 larva worms.
experiment encode accession: ENCSR067JIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR916UPC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB098UTA
size range: 150-350

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS765HVQ at ENCODE; https://www.encodeproject.org/ENCBS765HVQ/