title: TF ChIP-seq from whole organism (ENCLB288RAH)

description:
https://www.encodeproject.org/experiments/ENCSR604KUU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing Y53C12C.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR604KUU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR939PJG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB288RAH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans eyg-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y53C12C.1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS542LQC at ENCODE; https://www.encodeproject.org/ENCBS542LQC/


title: TF ChIP-seq from whole organism (ENCLB161AMI)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR168XBW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR168XBW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR923VFC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB161AMI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG2120-GFP embryo (18-24 hours) insertion targeting D. melanogaster CG2120

tag: antibody

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2120

tag: Sex

value: not collected

tag: dev stage

value: embryonic

tag: age

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS202KSL at ENCODE; https://www.encodeproject.org/ENCBS202KSL/


title: TF ChIP-seq from whole organism (ENCLB623RJC)

description:
https://www.encodeproject.org/experiments/ENCSR168XBW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR168XBW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR923VFC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB623RJC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS457MVN at ENCODE; https://www.encodeproject.org/ENCBS457MVN/


title: Control ChIP-seq from whole organism (ENCLB384AAO)

description:
https://www.encodeproject.org/experiments/ENCSR168MGM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9609-eGFP fusion proteins.
experiment encode accession: ENCSR168MGM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB384AAO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9609-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9609

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9609

value: pooled male and female

value: 0-24 hour

value: ENCBS254VDV at ENCODE; https://www.encodeproject.org/ENCBS254VDV/


title: TF ChIP-seq from whole organism (ENCLB780PKJ)

description:
https://www.encodeproject.org/experiments/ENCSR605NFY/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR605NFY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR610FIQ
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB780PKJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Fer2 embryo (6-24 hours) insertion targeting D. melanogaster Fer2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer2

value: ENCBS465TYY at ENCODE; https://www.encodeproject.org/ENCBS465TYY/


title: Control ChIP-seq from whole organism (ENCLB740IOH)

description:
https://www.encodeproject.org/experiments/ENCSR604YZN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR604YZN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB740IOH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain oc embryo (2-14 hours) insertion targeting D. melanogaster oc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to oc

value: ENCBS529KVV at ENCODE; https://www.encodeproject.org/ENCBS529KVV/


title: TF ChIP-seq from whole organism (ENCLB680EUG)

description:
https://www.encodeproject.org/experiments/ENCSR603SRL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZFP-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603SRL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR282QFI
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB680EUG
fragmentation methods: sonication (generic microtip)

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP534 (unc-119(tm4063) III; wgIs534) hermaphrodite L4 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans zfp-2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZFP-2

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS499ZGI at ENCODE; https://www.encodeproject.org/ENCBS499ZGI/


title: TF ChIP-seq from whole organism (ENCLB184DDJ)

description:
https://www.encodeproject.org/experiments/ENCSR408FDZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIR-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR408FDZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR024OAH
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB184DDJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP312 (unc-119(ed3) III; wgIs312) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans lir-3

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIR-3

value: ENCBS775CII at ENCODE; https://www.encodeproject.org/ENCBS775CII/


title: TF ChIP-seq from whole organism (ENCLB411MGN)

description:
https://www.encodeproject.org/experiments/ENCSR239YEX/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr83-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239YEX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR227MZM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB411MGN
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Hr83-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Hr83

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr83

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS206TIT at ENCODE; https://www.encodeproject.org/ENCBS206TIT/


title: TF ChIP-seq from whole organism (ENCLB088CAX)

description:
https://www.encodeproject.org/experiments/ENCSR168NHD/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CrebA-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR168NHD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR920JDE
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB088CAX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CrebA-MiMIC-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster CrebA

value: CrebA

value: whole organism

value: whole organisms

value: D. mel line contraining an intronic eGFP exon to create a CrebA-GFP fusion gene

value: Hugo Bellen

value: ENCBS088KOA at ENCODE; https://www.encodeproject.org/ENCBS088KOA/


title: TF ChIP-seq from whole organism (ENCLB308AWI)

description:
https://www.encodeproject.org/experiments/ENCSR026KXL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR026KXL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR653LES
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB308AWI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

extract_protocol: not provided

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS511HWS at ENCODE; https://www.encodeproject.org/ENCBS511HWS/


title: Control ChIP-seq from whole organism (ENCLB509GQH)

description:
https://www.encodeproject.org/experiments/ENCSR414VZP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tj-eGFP fusion proteins.
experiment encode accession: ENCSR414VZP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB509GQH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain tj-GFP female adult insertion targeting D. melanogaster tj

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tj

value: female

value: adult

value: ENCBS963WPT at ENCODE; https://www.encodeproject.org/ENCBS963WPT/


title: TF ChIP-seq from whole organism (ENCLB789BMZ)

description:
https://www.encodeproject.org/experiments/ENCSR408FDZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIR-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR408FDZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR024OAH
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB789BMZ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIR-3

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS450BTC at ENCODE; https://www.encodeproject.org/ENCBS450BTC/


title: TF ChIP-seq from whole organism (ENCLB189CNR)

description:
https://www.encodeproject.org/experiments/ENCSR026KXL/
***************
biological replicate number: 2
technical replicate number: 2
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR026KXL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR653LES
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB189CNR
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: pooled male and female

value: L1 larva

value: unknown


title: TF ChIP-seq from whole organism (ENCLB760WPU)

description:
https://www.encodeproject.org/experiments/ENCSR714ZDK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR714ZDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR437EAS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB760WPU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP111 (unc-119(ed3) III; wgIs111) hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans elt-4

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-4

value: late embryonic

value: egg bleaching

value: ENCBS008VNN at ENCODE; https://www.encodeproject.org/ENCBS008VNN/


title: Control ChIP-seq from whole organism (ENCLB458GQR)

description:
https://www.encodeproject.org/experiments/ENCSR722JKV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG18599-eGFP fusion proteins.
experiment encode accession: ENCSR722JKV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB458GQR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG18599-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG18599

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18599

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS801HIV at ENCODE; https://www.encodeproject.org/ENCBS801HIV/


title: TF ChIP-seq from whole organism (ENCLB041MLR)

description:
https://www.encodeproject.org/experiments/ENCSR718USP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR718USP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR849IRM
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB041MLR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13894 embryo (2-24 hours) insertion targeting D. melanogaster CG13894

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13894

value: not collected

value: ENCBS233AKY at ENCODE; https://www.encodeproject.org/ENCBS233AKY/


title: TF ChIP-seq from whole organism (ENCLB491GQE)

description:
https://www.encodeproject.org/experiments/ENCSR025VUG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-C16A3.4 in L1 larva worms.
experiment encode accession: ENCSR025VUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR181OGO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB491GQE
size range: 150-350

source_name: Caenorhabditis elegans strain OP345 (unc-119(ed3) III; wgIs345) mixed sex L1 larva insertion targeting C. elegans C16A3.4

value: whole organisms

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS934ZKR at ENCODE; https://www.encodeproject.org/ENCBS934ZKR/


title: TF ChIP-seq from whole organism (ENCLB783TOD)

description:
https://www.encodeproject.org/experiments/ENCSR165OGT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing topi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR165OGT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR591CMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB783TOD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain topi-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster topi

value: topi

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to topi

value: prepupa

value: unknown

tag: fly synchronization stage

value: white prepupa

value: ENCBS843QED at ENCODE; https://www.encodeproject.org/ENCBS843QED/


title: TF ChIP-seq from whole organism (ENCLB141UQR)

description:
https://www.encodeproject.org/experiments/ENCSR026KXL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR026KXL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR653LES
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB141UQR
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: Michael Snyder

value: ENCBS000HQU at ENCODE; https://www.encodeproject.org/ENCBS000HQU/


title: Control ChIP-seq from whole organism (ENCLB888QXF)

description:
https://www.encodeproject.org/experiments/ENCSR293HER/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing K09A11.1-eGFP fusion proteins.
experiment encode accession: ENCSR293HER
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB888QXF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) hermaphrodite late embryo insertion targeting C. elegans K09A11.1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to K09A11.1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS262CJM at ENCODE; https://www.encodeproject.org/ENCBS262CJM/


title: TF ChIP-seq from whole organism (ENCLB516ZPB)

description:
https://www.encodeproject.org/experiments/ENCSR166XCH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing corto-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR166XCH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR851JOQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB516ZPB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain corto-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster corto

value: corto

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to corto

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS819LTS at ENCODE; https://www.encodeproject.org/ENCBS819LTS/


title: TF ChIP-seq from whole organism (ENCLB016LAE)

description:
https://www.encodeproject.org/experiments/ENCSR718USP/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR718USP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR849IRM
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB016LAE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13894

value: not collected

value: ENCBS904AUU at ENCODE; https://www.encodeproject.org/ENCBS904AUU/


title: Control ChIP-seq from whole organism (ENCLB631MHK)

description:
https://www.encodeproject.org/experiments/ENCSR720HML/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11723-eGFP fusion proteins.
experiment encode accession: ENCSR720HML
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB631MHK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11723-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG11723

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11723

value: 0-16 hour

value: ENCBS619SVP at ENCODE; https://www.encodeproject.org/ENCBS619SVP/


title: TF ChIP-seq from whole organism (ENCLB569GBP)

description:
https://www.encodeproject.org/experiments/ENCSR025VUG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-C16A3.4 in L1 larva worms.
experiment encode accession: ENCSR025VUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR181OGO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB569GBP
size range: 150-350

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS845HOD at ENCODE; https://www.encodeproject.org/ENCBS845HOD/


title: TF ChIP-seq from whole organism (ENCLB608VHB)

description:
https://www.encodeproject.org/experiments/ENCSR165OGT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing topi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR165OGT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR591CMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB608VHB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: topi

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to topi

value: pooled male and female

value: prepupa

value: white prepupa

value: ENCBS996WJP at ENCODE; https://www.encodeproject.org/ENCBS996WJP/


title: TF ChIP-seq from whole organism (ENCLB622ZWN)

description:
https://www.encodeproject.org/experiments/ENCSR130CZH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing EFL-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR130CZH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR503YWW
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB622ZWN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL479 hermaphrodite young adult insertion targeting C. elegans efl-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-1

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS692CZR at ENCODE; https://www.encodeproject.org/ENCBS692CZR/


title: Control ChIP-seq from whole organism (ENCLB938LZL)

description:
https://www.encodeproject.org/experiments/ENCSR411ODP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y116A8C.19-eGFP fusion proteins.
experiment encode accession: ENCSR411ODP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB938LZL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP532 (unc-119(tm4063) III; wgIs532) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans Y116A8C.19

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y116A8C.19

value: L1 larva

value: unknown

value: L1 larva starved after bleaching

value: hour

value: ENCBS162AOI at ENCODE; https://www.encodeproject.org/ENCBS162AOI/


title: TF ChIP-seq from whole organism (ENCLB381SOH)

description:
https://www.encodeproject.org/experiments/ENCSR718USP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR718USP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR849IRM
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB381SOH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13894

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS199RGL at ENCODE; https://www.encodeproject.org/ENCBS199RGL/


title: Control ChIP-seq from whole organism (ENCLB187TRI)

description:
https://www.encodeproject.org/experiments/ENCSR128QIX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-30-eGFP fusion proteins.
experiment encode accession: ENCSR128QIX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB187TRI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite late embryo insertion targeting C. elegans hlh-30

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: ENCBS419NRE at ENCODE; https://www.encodeproject.org/ENCBS419NRE/


title: TF ChIP-seq from whole organism (ENCLB973ILB)

description:
https://www.encodeproject.org/experiments/ENCSR710GXZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-179-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR710GXZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR515JDZ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB973ILB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP465 (unc-119(tm4063) III; wgIs465) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-179

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-179

value: young adult

value: unknown

value: Valerie Reinke

value: ENCBS759SHD at ENCODE; https://www.encodeproject.org/ENCBS759SHD/


title: TF ChIP-seq from whole organism (ENCLB797EUX)

description:
https://www.encodeproject.org/experiments/ENCSR710GXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-179-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR710GXZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR515JDZ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB797EUX
fragmentation methods: sonication (generic microtip)

value: not applicable

value: L1 larva starved after bleaching

value: hour

value: ENCBS386HWH at ENCODE; https://www.encodeproject.org/ENCBS386HWH/


title: Control ChIP-seq from whole organism (ENCLB236WHQ)

description:
https://www.encodeproject.org/experiments/ENCSR046BPV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Dif-eGFP fusion proteins.
experiment encode accession: ENCSR046BPV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB236WHQ
fragmentation methods: sonication (Bioruptor generic)
size range: 150-225

source_name: Drosophila melanogaster strain Dif-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Dif

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dif

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS042FAE at ENCODE; https://www.encodeproject.org/ENCBS042FAE/


title: Control ChIP-seq from whole organism (ENCLB832UED)

description:
https://www.encodeproject.org/experiments/ENCSR159LNW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing jumu-eGFP fusion proteins.
experiment encode accession: ENCSR159LNW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB832UED
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain jumu-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster jumu

value: whole organism

value: D. mel line contraining an intronic eGFP exon to create a jumu-GFP fusion gene

value: embryonic

value: 0-24 hour

value: Hugo Bellen

value: ENCBS437JAU at ENCODE; https://www.encodeproject.org/ENCBS437JAU/


title: TF ChIP-seq from whole organism (ENCLB835SNA)

description:
https://www.encodeproject.org/experiments/ENCSR714ZDK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR714ZDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR437EAS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB835SNA
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-4

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS585JIC at ENCODE; https://www.encodeproject.org/ENCBS585JIC/


title: TF ChIP-seq from whole organism (ENCLB578PVP)

description:
https://www.encodeproject.org/experiments/ENCSR166XCH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing corto-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR166XCH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR851JOQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB578PVP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: corto

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to corto

value: pooled male and female

value: Kevin White, UChicago

value: Kevin White

value: ENCBS379UYC at ENCODE; https://www.encodeproject.org/ENCBS379UYC/


title: Control ChIP-seq from whole organism (ENCLB888XXI)

description:
https://www.encodeproject.org/experiments/ENCSR892EIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZTF-11-eGFP fusion proteins.
experiment encode accession: ENCSR892EIQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB888XXI
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Caenorhabditis elegans strain OP511 (unc-119(tm4063) III; wgIs511) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-11

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L1 larva

value: L1 larva starved after bleaching

value: hour

value: ENCBS072LQQ at ENCODE; https://www.encodeproject.org/ENCBS072LQQ/


title: TF ChIP-seq from whole organism (ENCLB637YSR)

description:
https://www.encodeproject.org/experiments/ENCSR597WQR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing rnt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR597WQR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR799DSA
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB637YSR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP462 (unc-119(tm4063) III; wgIs462) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rnt-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to rnt-1

value: hermaphrodite

value: unknown

value: Valerie Reinke, Yale

value: ENCBS039FVC at ENCODE; https://www.encodeproject.org/ENCBS039FVC/


title: Control ChIP-seq from whole organism (ENCLB648ZAW)

description:
https://www.encodeproject.org/experiments/ENCSR157EWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins.
experiment encode accession: ENCSR157EWZ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB648ZAW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain chif-RA-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster chif

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif-RA

value: embryonic

value: 0-24 hour

value: ENCBS727PBC at ENCODE; https://www.encodeproject.org/ENCBS727PBC/


title: TF ChIP-seq from whole organism (ENCLB907NGQ)

description:
https://www.encodeproject.org/experiments/ENCSR414EAT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR414EAT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR067XAN
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB907NGQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gsb-n embryo (4-14 hours) insertion targeting D. melanogaster gsb-n

value: gsb-n

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gsb-n

value: not collected

value: Kevin White, UChicago

value: Kevin White

value: ENCBS477SOZ at ENCODE; https://www.encodeproject.org/ENCBS477SOZ/


title: TF ChIP-seq from whole organism (ENCLB296XZO)

description:
https://www.encodeproject.org/experiments/ENCSR021SOI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ces-1 in L3 larva worms.
experiment encode accession: ENCSR021SOI
assay title: TF ChIP-seq
possible controls: ENCSR259OSS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB296XZO
size range: 150-350

source_name: Caenorhabditis elegans strain OP174 (unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)) mixed sex L3 larva insertion targeting C. elegans ces-1

value: whole organisms

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS020ESR at ENCODE; https://www.encodeproject.org/ENCBS020ESR/


title: Control ChIP-seq from whole organism (ENCLB652NQF)

description:
https://www.encodeproject.org/experiments/ENCSR293HER/
***************
biological replicate number: 1
technical replicate number: 2
description: This is the ChIP-seq control of transgenic worms expressing K09A11.1-eGFP fusion proteins.
experiment encode accession: ENCSR293HER
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB652NQF
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to K09A11.1

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS262CJM at ENCODE; https://www.encodeproject.org/ENCBS262CJM/


title: TF ChIP-seq from whole organism (ENCLB690MOW)

description:
https://www.encodeproject.org/experiments/ENCSR603LBA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603LBA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR335XZL
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB690MOW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sp1-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Sp1

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sp1

value: wandering third instar larva

value: Kevin White, UChicago

value: ENCBS002MHH at ENCODE; https://www.encodeproject.org/ENCBS002MHH/


title: Control ChIP-seq from whole organism (ENCLB620SZU)

description:
https://www.encodeproject.org/experiments/ENCSR719RUU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CrebB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR719RUU
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB620SZU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CrebB mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CrebB

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CrebB

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS988OQB at ENCODE; https://www.encodeproject.org/ENCBS988OQB/


title: Control ChIP-seq from whole organism (ENCLB371BHQ)

description:
https://www.encodeproject.org/experiments/ENCSR235TIB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing trh-eGFP fusion proteins.
experiment encode accession: ENCSR235TIB
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB371BHQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain trh-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster trh

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to trh

value: ENCBS752WAR at ENCODE; https://www.encodeproject.org/ENCBS752WAR/


title: TF ChIP-seq from whole organism (ENCLB174IJK)

description:
https://www.encodeproject.org/experiments/ENCSR021SOI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ces-1 in L3 larva worms.
experiment encode accession: ENCSR021SOI
assay title: TF ChIP-seq
possible controls: ENCSR259OSS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB174IJK
size range: 150-350

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS124HYR at ENCODE; https://www.encodeproject.org/ENCBS124HYR/


title: Control ChIP-seq from whole organism (ENCLB777UZR)

description:
https://www.encodeproject.org/experiments/ENCSR199VEK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR199VEK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB777UZR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex young adult insertion targeting C. elegans snpc-4

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: young adult

value: Michael Snyder

value: ENCBS565FHC at ENCODE; https://www.encodeproject.org/ENCBS565FHC/


title: TF ChIP-seq from whole organism (ENCLB045NOU)

description:
https://www.encodeproject.org/experiments/ENCSR414EAT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR414EAT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR067XAN
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB045NOU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: gsb-n

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gsb-n

value: not collected

value: embryonic

value: Kevin White, UChicago

value: ENCBS125HRQ at ENCODE; https://www.encodeproject.org/ENCBS125HRQ/


title: TF ChIP-seq from whole organism (ENCLB619ZDU)

description:
https://www.encodeproject.org/experiments/ENCSR394KNZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-43-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR394KNZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR782XFF
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB619ZDU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP477 (unc-119(tm4063) III; wgIs477) hermaphrodite L3 larva 36.5 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-43

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-43

value: hermaphrodite

value: L3 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS001RNS at ENCODE; https://www.encodeproject.org/ENCBS001RNS/


title: TF ChIP-seq from whole organism (ENCLB396SKF)

description:
https://www.encodeproject.org/experiments/ENCSR229DNL/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dsf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR229DNL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR255TJG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB396SKF
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain dsf-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dsf

value: dsf

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dsf

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White

value: ENCBS396AVP at ENCODE; https://www.encodeproject.org/ENCBS396AVP/


title: TF ChIP-seq from whole organism (ENCLB486ZHH)

description:
https://www.encodeproject.org/experiments/ENCSR597WQR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing rnt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR597WQR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR799DSA
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB486ZHH
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to rnt-1

value: L1 larva

value: ENCBS481PAX at ENCODE; https://www.encodeproject.org/ENCBS481PAX/


title: Control ChIP-seq from whole organism (ENCLB611WDE)

description:
https://www.encodeproject.org/experiments/ENCSR124RLN/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR124RLN
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB611WDE
size range: 150-350

source_name: Caenorhabditis elegans strain OP90 (unc-119(ed3) III; wgIs90) mixed sex L2 larva insertion targeting C. elegans nhr-6

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS149YKA at ENCODE; https://www.encodeproject.org/ENCBS149YKA/


title: TF ChIP-seq from whole organism (ENCLB887PSI)

description:
https://www.encodeproject.org/experiments/ENCSR165OGT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing topi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR165OGT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR591CMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB887PSI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain topi-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster topi

value: topi

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to topi

value: prepupa

value: Kevin White, UChicago

value: white prepupa

value: ENCBS350HNE at ENCODE; https://www.encodeproject.org/ENCBS350HNE/


title: TF ChIP-seq from whole organism (ENCLB355KFY)

description:
https://www.encodeproject.org/experiments/ENCSR414EAT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR414EAT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR067XAN
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB355KFY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: gsb-n

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gsb-n

value: not collected

value: embryonic

value: Kevin White

value: ENCBS833HDE at ENCODE; https://www.encodeproject.org/ENCBS833HDE/


title: TF ChIP-seq from whole organism (ENCLB236FRY)

description:
https://www.encodeproject.org/experiments/ENCSR603LBA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603LBA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR335XZL
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB236FRY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sp1

value: pooled male and female

value: wandering third instar larva

value: unknown

value: ENCBS027NWS at ENCODE; https://www.encodeproject.org/ENCBS027NWS/


title: TF ChIP-seq from whole organism (ENCLB068LOQ)

description:
https://www.encodeproject.org/experiments/ENCSR153KTS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing trh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR153KTS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR235TIB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB068LOQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: trh

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to trh

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS171LAR at ENCODE; https://www.encodeproject.org/ENCBS171LAR/


title: Control ChIP-seq from whole organism (ENCLB258TJE)

description:
https://www.encodeproject.org/experiments/ENCSR199VEK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR199VEK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB258TJE
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: young adult

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS356QSE at ENCODE; https://www.encodeproject.org/ENCBS356QSE/


title: TF ChIP-seq from whole organism (ENCLB949LRZ)

description:
https://www.encodeproject.org/experiments/ENCSR229DNL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dsf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR229DNL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR255TJG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB949LRZ
fragmentation methods: sonication (Bioruptor generic)

value: dsf

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dsf

value: Kevin White

value: ENCBS544JZY at ENCODE; https://www.encodeproject.org/ENCBS544JZY/


title: Control ChIP-seq from whole organism (ENCLB904VAT)

description:
https://www.encodeproject.org/experiments/ENCSR124RLN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR124RLN
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB904VAT
size range: 150-350

value: pooled male and female

value: L2 larva

value: unknown

value: CGC

value: ENCBS222EIS at ENCODE; https://www.encodeproject.org/ENCBS222EIS/


title: TF ChIP-seq from whole organism (ENCLB900PUE)

description:
https://www.encodeproject.org/experiments/ENCSR599WVE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR599WVE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR280HPE
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB900PUE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10147-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10147

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10147

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS128HXN at ENCODE; https://www.encodeproject.org/ENCBS128HXN/


title: TF ChIP-seq from whole organism (ENCLB195KGX)

description:
https://www.encodeproject.org/experiments/ENCSR153KTS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing trh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR153KTS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR235TIB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB195KGX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: trh

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to trh

value: ENCBS473QYU at ENCODE; https://www.encodeproject.org/ENCBS473QYU/


title: TF ChIP-seq from whole organism (ENCLB605ROJ)

description:
https://www.encodeproject.org/experiments/ENCSR197UZT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against CEH-16 in L3 larva worms.
experiment encode accession: ENCSR197UZT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR017JSX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB605ROJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP82 (unc-119(tm4063) III; wgIs82) mixed sex L3 larva insertion targeting C. elegans ceh-16

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-16

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS975JGN at ENCODE; https://www.encodeproject.org/ENCBS975JGN/


title: Control ChIP-seq from whole organism (ENCLB130NQT)

description:
https://www.encodeproject.org/experiments/ENCSR577GDS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing DIE-1-eGFP fusion proteins.
experiment encode accession: ENCSR577GDS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB130NQT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain RW10316 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans die-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DIE-1

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS413QNM at ENCODE; https://www.encodeproject.org/ENCBS413QNM/


title: TF ChIP-seq from whole organism (ENCLB170FPP)

description:
https://www.encodeproject.org/experiments/ENCSR599WVE/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR599WVE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR280HPE
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB170FPP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10147

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS348MJA at ENCODE; https://www.encodeproject.org/ENCBS348MJA/


title: TF ChIP-seq from whole organism (ENCLB267KQY)

description:
https://www.encodeproject.org/experiments/ENCSR394KNZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-43-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR394KNZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR782XFF
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB267KQY
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-43

value: L3 larva

value: ENCBS299AWX at ENCODE; https://www.encodeproject.org/ENCBS299AWX/


title: TF ChIP-seq from whole organism (ENCLB012DXA)

description:
https://www.encodeproject.org/experiments/ENCSR603LBA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603LBA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR335XZL
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB012DXA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sp1

value: wandering third instar larva

value: unknown

value: ENCBS290RSJ at ENCODE; https://www.encodeproject.org/ENCBS290RSJ/


title: Control ChIP-seq from whole organism (ENCLB162SNK)

description:
https://www.encodeproject.org/experiments/ENCSR701DBM/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-8-eGFP fusion proteins.
experiment encode accession: ENCSR701DBM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB162SNK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP63 hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans hlh-8

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-8

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS505KYL at ENCODE; https://www.encodeproject.org/ENCBS505KYL/


title: TF ChIP-seq from whole organism (ENCLB425EOB)

description:
https://www.encodeproject.org/experiments/ENCSR226MOG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10565-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR226MOG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR837BBL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB425EOB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10565-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10565

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10565

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS824JDC at ENCODE; https://www.encodeproject.org/ENCBS824JDC/


title: TF ChIP-seq from whole organism (ENCLB422UJG)

description:
https://www.encodeproject.org/experiments/ENCSR387HSD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F13C5.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR387HSD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR223SII
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB422UJG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) mixed sex early embryo 1 hour post synchronization using egg bleaching insertion targeting C. elegans F13C5.2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F13C5.2

value: early embryonic

value: unknown

value: ENCBS782ECF at ENCODE; https://www.encodeproject.org/ENCBS782ECF/


title: TF ChIP-seq from whole organism (ENCLB551CDT)

description:
https://www.encodeproject.org/experiments/ENCSR701SBA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LET-607-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR701SBA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR320VBK
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB551CDT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL529 hermaphrodite young adult 67 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans let-607

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LET-607

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS676KOP at ENCODE; https://www.encodeproject.org/ENCBS676KOP/


title: TF ChIP-seq from whole organism (ENCLB284WIG)

description:
https://www.encodeproject.org/experiments/ENCSR197UZT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against CEH-16 in L3 larva worms.
experiment encode accession: ENCSR197UZT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR017JSX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB284WIG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-16

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS505KAU at ENCODE; https://www.encodeproject.org/ENCBS505KAU/


title: Control ChIP-seq from whole organism (ENCLB115PDD)

description:
https://www.encodeproject.org/experiments/ENCSR563MPC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing FAX-1-eGFP fusion proteins.
experiment encode accession: ENCSR563MPC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB115PDD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP164 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans fax-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FAX-1

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS252UKR at ENCODE; https://www.encodeproject.org/ENCBS252UKR/


title: TF ChIP-seq from whole organism (ENCLB044PDE)

description:
https://www.encodeproject.org/experiments/ENCSR909XXF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909XXF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR900MVH
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB044PDE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain PHDP embryo (10-24 hours) insertion targeting D. melanogaster PHDP

value: PHDP

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to PHDP

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS744RBT at ENCODE; https://www.encodeproject.org/ENCBS744RBT/


title: TF ChIP-seq from whole organism (ENCLB228XUR)

description:
https://www.encodeproject.org/experiments/ENCSR226MOG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10565-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR226MOG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR837BBL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB228XUR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10565

value: pooled male and female

value: 0-24 hour

value: ENCBS032MQG at ENCODE; https://www.encodeproject.org/ENCBS032MQG/


title: TF ChIP-seq from whole organism (ENCLB543LDY)

description:
https://www.encodeproject.org/experiments/ENCSR124QHO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L4 larva worms.
experiment encode accession: ENCSR124QHO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR131UVY
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB543LDY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L4 larva insertion targeting C. elegans ceh-82

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS881WJU at ENCODE; https://www.encodeproject.org/ENCBS881WJU/


title: TF ChIP-seq from whole organism (ENCLB925ITI)

description:
https://www.encodeproject.org/experiments/ENCSR909XXF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909XXF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR900MVH
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB925ITI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: PHDP

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to PHDP

value: not collected

value: embryonic

value: ENCBS216HPB at ENCODE; https://www.encodeproject.org/ENCBS216HPB/


title: Control ChIP-seq from whole organism (ENCLB244MSC)

description:
https://www.encodeproject.org/experiments/ENCSR866XOK/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-48-eGFP fusion proteins.
experiment encode accession: ENCSR866XOK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB244MSC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP518 (unc-119(tm4063) III; wgIs518) hermaphrodite L4 larva 48.5 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-48

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-48

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS440JLH at ENCODE; https://www.encodeproject.org/ENCBS440JLH/


title: TF ChIP-seq from whole organism (ENCLB456SYG)

description:
https://www.encodeproject.org/experiments/ENCSR124QHO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L4 larva worms.
experiment encode accession: ENCSR124QHO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR131UVY
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB456SYG
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS699KWV at ENCODE; https://www.encodeproject.org/ENCBS699KWV/


title: Control ChIP-seq from whole organism (ENCLB798BCC)

description:
https://www.encodeproject.org/experiments/ENCSR227MZM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hr83-eGFP fusion proteins.
experiment encode accession: ENCSR227MZM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB798BCC
fragmentation methods: sonication (Bioruptor generic)
size range: 175-250

source_name: Drosophila melanogaster strain Hr83-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Hr83

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr83

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS583SNF at ENCODE; https://www.encodeproject.org/ENCBS583SNF/


title: TF ChIP-seq from whole organism (ENCLB060UZX)

description:
https://www.encodeproject.org/experiments/ENCSR695HLU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FKH-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR695HLU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR356KYP
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB060UZX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP78 (unc-119(ed3) III; wgIs78) hermaphrodite late embryo 5.5 hours post synchronization using egg bleaching insertion targeting C. elegans fkh-6

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-6

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS816RJK at ENCODE; https://www.encodeproject.org/ENCBS816RJK/


title: TF ChIP-seq from whole organism (ENCLB637TVB)

description:
https://www.encodeproject.org/experiments/ENCSR149KUC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12155-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR149KUC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR089QIZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB637TVB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12155-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG12155

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12155

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS041EBN at ENCODE; https://www.encodeproject.org/ENCBS041EBN/


title: Control ChIP-seq from whole organism (ENCLB525LSJ)

description:
https://www.encodeproject.org/experiments/ENCSR124OTS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR124OTS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB525LSJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP337 (unc119(ed3);wgIs377(fkh-10::TY1 EGFP FLAG;unc119)) mixed sex L1 larva insertion targeting C. elegans fkh-10

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-10

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS714IZU at ENCODE; https://www.encodeproject.org/ENCBS714IZU/


title: TF ChIP-seq from whole organism (ENCLB538ZZG)

description:
https://www.encodeproject.org/experiments/ENCSR701SBA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LET-607-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR701SBA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR320VBK
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB538ZZG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LET-607

value: hermaphrodite

value: young adult

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS090ICI at ENCODE; https://www.encodeproject.org/ENCBS090ICI/


title: Control ChIP-seq from whole organism (ENCLB826AEW)

description:
https://www.encodeproject.org/experiments/ENCSR142WLZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Bteb2-eGFP fusion proteins.
experiment encode accession: ENCSR142WLZ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB826AEW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Bteb2-GFP mixed sex embryo (4-20 hours) insertion targeting D. melanogaster Klf15

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bteb2

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS581PWW at ENCODE; https://www.encodeproject.org/ENCBS581PWW/


title: Control ChIP-seq from whole organism (ENCLB151SQQ)

description:
https://www.encodeproject.org/experiments/ENCSR598ZNC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17802-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR598ZNC
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB151SQQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17802 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG17802

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17802

value: 0-14 hour

value: ENCBS084TAJ at ENCODE; https://www.encodeproject.org/ENCBS084TAJ/


title: TF ChIP-seq from whole organism (ENCLB775RLV)

description:
https://www.encodeproject.org/experiments/ENCSR909HKS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909HKS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR098GAV
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB775RLV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain noc mixed sex larva (48 days) insertion targeting D. melanogaster noc

value: noc

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to noc

value: larva

value: 48 day

value: ENCBS558IBR at ENCODE; https://www.encodeproject.org/ENCBS558IBR/


title: Control ChIP-seq from whole organism (ENCLB865RMH)

description:
https://www.encodeproject.org/experiments/ENCSR017JSX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR017JSX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB865RMH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP82 (unc-119(tm4063) III; wgIs82) mixed sex L3 larva insertion targeting C. elegans ceh-16

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-16

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS109CBJ at ENCODE; https://www.encodeproject.org/ENCBS109CBJ/


title: Control ChIP-seq from whole organism (ENCLB417XKB)

description:
https://www.encodeproject.org/experiments/ENCSR124OTS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR124OTS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB417XKB
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-10

value: pooled male and female

value: L1 larva

value: ENCBS830JKH at ENCODE; https://www.encodeproject.org/ENCBS830JKH/


title: TF ChIP-seq from whole organism (ENCLB872FJT)

description:
https://www.encodeproject.org/experiments/ENCSR695HLU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FKH-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR695HLU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR356KYP
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB872FJT
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-6

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS489MJV at ENCODE; https://www.encodeproject.org/ENCBS489MJV/


title: TF ChIP-seq from whole organism (ENCLB594URO)

description:
https://www.encodeproject.org/experiments/ENCSR909XXF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909XXF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR900MVH
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB594URO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: PHDP

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to PHDP

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS053LBG at ENCODE; https://www.encodeproject.org/ENCBS053LBG/


title: Control ChIP-seq from whole organism (ENCLB927JHM)

description:
https://www.encodeproject.org/experiments/ENCSR017JSX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR017JSX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB927JHM
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-16

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS560UAK at ENCODE; https://www.encodeproject.org/ENCBS560UAK/


title: Control ChIP-seq from whole organism (ENCLB017LYM)

description:
https://www.encodeproject.org/experiments/ENCSR695HJO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing PQM-1-eGFP fusion proteins.
experiment encode accession: ENCSR695HJO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB017LYM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) hermaphrodite late embryo 2 hours post synchronization using egg bleaching insertion targeting C. elegans pqm-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS098CIV at ENCODE; https://www.encodeproject.org/ENCBS098CIV/


title: Control ChIP-seq from whole organism (ENCLB799BVF)

description:
https://www.encodeproject.org/experiments/ENCSR139RMN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Lpt-eGFP fusion proteins.
experiment encode accession: ENCSR139RMN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB799BVF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Lpt-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Lpt

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Lpt

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS104CUK at ENCODE; https://www.encodeproject.org/ENCBS104CUK/


title: TF ChIP-seq from whole organism (ENCLB374XSR)

description:
https://www.encodeproject.org/experiments/ENCSR909HKS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909HKS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR098GAV
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB374XSR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: noc

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to noc

value: pooled male and female

value: larva

value: 48 day

value: ENCBS350FWM at ENCODE; https://www.encodeproject.org/ENCBS350FWM/


title: Control ChIP-seq from whole organism (ENCLB269NYF)

description:
https://www.encodeproject.org/experiments/ENCSR311GKZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG14965-eGFP fusion proteins.
experiment encode accession: ENCSR311GKZ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB269NYF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14965-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG14965

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14965

value: embryonic

value: 0-24 hour

value: ENCBS973TVK at ENCODE; https://www.encodeproject.org/ENCBS973TVK/


title: Control ChIP-seq from whole organism (ENCLB229TKP)

description:
https://www.encodeproject.org/experiments/ENCSR385LHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing REC-8-eGFP fusion proteins.
experiment encode accession: ENCSR385LHQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB229TKP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL563 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rec-8

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REC-8

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS175IVP at ENCODE; https://www.encodeproject.org/ENCBS175IVP/


title: TF ChIP-seq from whole organism (ENCLB205FJS)

description:
https://www.encodeproject.org/experiments/ENCSR907HKG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7839-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR907HKG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR470NLR
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB205FJS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7839 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG7839

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7839

value: pooled male and female

value: Kevin White, UChicago

value: Kevin White

value: ENCBS822KZH at ENCODE; https://www.encodeproject.org/ENCBS822KZH/


title: Control ChIP-seq from whole organism (ENCLB020GVP)

description:
https://www.encodeproject.org/experiments/ENCSR555GJK/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MADF-10-eGFP fusion proteins.
experiment encode accession: ENCSR555GJK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB020GVP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP508 (unc-119(tm4063) III; wgIs508) hermaphrodite young adult 68 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans madf-10

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MADF-10

value: ENCBS464RWS at ENCODE; https://www.encodeproject.org/ENCBS464RWS/


title: TF ChIP-seq from whole organism (ENCLB494CQB)

description:
https://www.encodeproject.org/experiments/ENCSR015SZT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L1 larva worms.
experiment encode accession: ENCSR015SZT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR790PHS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB494CQB
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L1 larva insertion targeting C. elegans nhr-28

value: not applicable

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS974RZC at ENCODE; https://www.encodeproject.org/ENCBS974RZC/


title: TF ChIP-seq from whole organism (ENCLB442GAS)

description:
https://www.encodeproject.org/experiments/ENCSR149KUC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12155-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR149KUC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR089QIZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB442GAS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12155

value: embryonic

value: 0-24 hour

value: ENCBS485ZNQ at ENCODE; https://www.encodeproject.org/ENCBS485ZNQ/


title: TF ChIP-seq from whole organism (ENCLB803EYD)

description:
https://www.encodeproject.org/experiments/ENCSR907HKG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7839-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR907HKG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR470NLR
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB803EYD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7839

value: ENCBS040HNK at ENCODE; https://www.encodeproject.org/ENCBS040HNK/


title: TF ChIP-seq from whole organism (ENCLB776YNQ)

description:
https://www.encodeproject.org/experiments/ENCSR015SZT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L1 larva worms.
experiment encode accession: ENCSR015SZT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR790PHS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB776YNQ
size range: 150-350

value: pooled male and female

value: unknown

value: ENCBS154NEO at ENCODE; https://www.encodeproject.org/ENCBS154NEO/


title: TF ChIP-seq from whole organism (ENCLB764WZH)

description:
https://www.encodeproject.org/experiments/ENCSR032HMJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(z)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032HMJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR818AKL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB764WZH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(z)-GFP mixed sex prepupa insertion targeting D. melanogaster E(z)

value: E(z)

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(z)

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS601KRR at ENCODE; https://www.encodeproject.org/ENCBS601KRR/


title: Control ChIP-seq from whole organism (ENCLB519XXT)

description:
https://www.encodeproject.org/experiments/ENCSR122WYP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR122WYP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB519XXT
size range: 150-350

source_name: Caenorhabditis elegans strain OP196 (unc-119(ed3) III; wgIs196) mixed sex L1 larva insertion targeting C. elegans sptf-1

value: not applicable

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS293QGJ at ENCODE; https://www.encodeproject.org/ENCBS293QGJ/


title: TF ChIP-seq from whole organism (ENCLB807QIX)

description:
https://www.encodeproject.org/experiments/ENCSR689UBU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing REC-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR689UBU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR385LHQ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB807QIX
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REC-8

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS300NJX at ENCODE; https://www.encodeproject.org/ENCBS300NJX/


title: TF ChIP-seq from whole organism (ENCLB657JNG)

description:
https://www.encodeproject.org/experiments/ENCSR907HKG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7839-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR907HKG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR470NLR
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB657JNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7839

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS541SZQ at ENCODE; https://www.encodeproject.org/ENCBS541SZQ/


title: TF ChIP-seq from whole organism (ENCLB469KRF)

description:
https://www.encodeproject.org/experiments/ENCSR909HKS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR909HKS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR098GAV
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB469KRF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: noc

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to noc

value: larva

value: 48 day

value: Kevin White

value: ENCBS418HSO at ENCODE; https://www.encodeproject.org/ENCBS418HSO/


title: Control ChIP-seq from whole organism (ENCLB730VSQ)

description:
https://www.encodeproject.org/experiments/ENCSR122WYP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR122WYP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB730VSQ
size range: 150-350

value: whole organisms

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS999JZX at ENCODE; https://www.encodeproject.org/ENCBS999JZX/