title: Control ChIP-seq from whole organism (ENCLB181TXG)

description:
https://www.encodeproject.org/experiments/ENCSR145MWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR145MWJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB181TXG
size range: 150-350

source_name: Caenorhabditis elegans strain YL398 (unc119(ed3)III; vrIs55[pGES-1::LIN-35::GFP FLAG: LIN-35 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans lin-35

value: whole organism

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS371EZA at ENCODE; https://www.encodeproject.org/ENCBS371EZA/


title: Control ChIP-seq from whole organism (ENCLB426MBY)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR640NJO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR640NJO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB426MBY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain lola-RI-GFP mixed sex wandering third instar larva whole organism stably expressing C-terminal eGFP-tagged lola

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Lola-RI

tag: Sex

tag: dev stage

value: wandering third instar larva

tag: age

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS429ZCD at ENCODE; https://www.encodeproject.org/ENCBS429ZCD/


title: Control ChIP-seq from whole organism (ENCLB677ATH)

description:
https://www.encodeproject.org/experiments/ENCSR149QCW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR149QCW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB677ATH
size range: 150-350

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L3 larva insertion targeting C. elegans elt-3

extract_protocol: not provided

value: L3 larva

value: ENCBS149CKR at ENCODE; https://www.encodeproject.org/ENCBS149CKR/


title: Control ChIP-seq from whole organism (ENCLB373AQI)

description:
https://www.encodeproject.org/experiments/ENCSR042QHV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR042QHV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB373AQI
size range: 150-350

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva insertion targeting C. elegans pqm-1

value: ENCBS272FIY at ENCODE; https://www.encodeproject.org/ENCBS272FIY/


title: TF ChIP-seq from whole organism (ENCLB980JMU)

description:
https://www.encodeproject.org/experiments/ENCSR320RNP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in L3 larva worms.
experiment encode accession: ENCSR320RNP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR280HHQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB980JMU
size range: 150-350

source_name: Caenorhabditis elegans strain OP228 (unc-119(ed3) III; wgIs228) mixed sex L3 larva insertion targeting C. elegans nhr-237

tag: antibody

value: whole organism

value: ENCBS881TLH at ENCODE; https://www.encodeproject.org/ENCBS881TLH/


title: SHR3

city: Tianjin

first: Hao

last: Wu

address: No.190 Jiaoyuan Road, Hongqiao District

department: Department of Cardiology

country: China

institute: Tianjin Union Medical Center

library_source: transcriptomic

data_processing:
Raw data (raw reads) were processed using Trimmomatic. The reads containing ploy-N and the low quality reads were removed to obtain the clean reads. Then the clean reads were mapped to reference genome using hisat2.
FPKM value of each gene was calculated using cufflinks, and the read counts of each gene were obtained by htseq-count. DEGs were identified using the DESeq(2012) R package functions estimateSizeFactors and nbinomTest. Pvalue < 0.05 and foldChange >2 or foldChange < 0.5 was set as the threshold for significantly differential expression.
Assembly: Rnor_6.0
Supplementary files format and content: Microsoft Excel file includes fpkm values for each Sample

molecule: total RNA

organism: Rattus norvegicus

source_name: heart

extract_protocol:
Total RNA was extracted using the mirVana miRNA Isolation Kit (Ambion) following the manufacturer’s protocol.
The libraries were constructed using TruSeq Stranded mRNA LTSample Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions.

treatment_protocol: All animals were housed in a 12-hour light/dark room and provided with free access to tap water and chow feed in a laboratory environment. After acclimatization for 1 week in an on-site facility, the SHR+Allisartan group animals were orally administered Allisartanin 1 ml of distilled water for 34 weeks. The WKY and SHR groups were orally administered 1 ml of distilled water for 34 weeks.

tag: tissue

value: heart


title: SHR+Allisartan1


title: TF ChIP-seq from whole organism (ENCLB904DET)

description:
https://www.encodeproject.org/experiments/ENCSR761TCG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing su(Hw)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR761TCG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR564FZY
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB904DET
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain SuHw-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster su(Hw)

value: su(Hw)

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to su(Hw)

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS648OWI at ENCODE; https://www.encodeproject.org/ENCBS648OWI/


title: Control ChIP-seq from whole organism (ENCLB579QDR)

description:
https://www.encodeproject.org/experiments/ENCSR316CFG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR316CFG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB579QDR
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L2 larva whole organism

value: whole organisms

value: not applicable

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS178CLA at ENCODE; https://www.encodeproject.org/ENCBS178CLA/


title: Control ChIP-seq from whole organism (ENCLB579UIJ)

description:
https://www.encodeproject.org/experiments/ENCSR382DPD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing en-eGFP fusion proteins.
experiment encode accession: ENCSR382DPD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB579UIJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 3T-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster en

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to en

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS603XVN at ENCODE; https://www.encodeproject.org/ENCBS603XVN/


title: TF ChIP-seq from whole organism (ENCLB412IGS)

description:
https://www.encodeproject.org/experiments/ENCSR320RNP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in L3 larva worms.
experiment encode accession: ENCSR320RNP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR280HHQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB412IGS
size range: 150-350

value: whole organism

value: L3 larva

value: ENCBS543UIR at ENCODE; https://www.encodeproject.org/ENCBS543UIR/


title: TF ChIP-seq from whole organism (ENCLB613LAV)

description:
https://www.encodeproject.org/experiments/ENCSR390QUD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sima-RB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR390QUD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR802IDG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB613LAV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sima-RB-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster sima

value: sima

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sima-RB

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS070HRZ at ENCODE; https://www.encodeproject.org/ENCBS070HRZ/


title: TF ChIP-seq from whole organism (ENCLB510GAZ)

description:
https://www.encodeproject.org/experiments/ENCSR318DTY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-fkh-10 in L4 larva worms.
experiment encode accession: ENCSR318DTY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR288FNX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB510GAZ
size range: 150-350

source_name: Caenorhabditis elegans strain OP337 (unc119(ed3);wgIs377(fkh-10::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans fkh-10

value: whole organisms

value: not applicable

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS737RJL at ENCODE; https://www.encodeproject.org/ENCBS737RJL/


title: Control ChIP-seq from whole organism (ENCLB854IWG)

description:
https://www.encodeproject.org/experiments/ENCSR641PKP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7987-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR641PKP
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB854IWG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7987-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG7987

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7987

value: Kevin White, UChicago

value: Kevin White

value: ENCBS839NEW at ENCODE; https://www.encodeproject.org/ENCBS839NEW/


title: SHR1

value: heart


title: TF ChIP-seq from whole organism (ENCLB671CDU)

description:
https://www.encodeproject.org/experiments/ENCSR761TCG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing su(Hw)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR761TCG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR564FZY
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB671CDU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: su(Hw)

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to su(Hw)

value: ENCBS447KSX at ENCODE; https://www.encodeproject.org/ENCBS447KSX/


title: Control ChIP-seq from whole organism (ENCLB468MVM)

description:
https://www.encodeproject.org/experiments/ENCSR576KIW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing odsH-eGFP fusion proteins.
experiment encode accession: ENCSR576KIW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB468MVM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain OdsH-GFP wandering third instar larva insertion targeting D. melanogaster OdsH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to OdsH

value: not collected

value: wandering third instar larva

value: ENCBS072JXG at ENCODE; https://www.encodeproject.org/ENCBS072JXG/


title: TF ChIP-seq from whole organism (ENCLB347GAW)

description:
https://www.encodeproject.org/experiments/ENCSR304RME/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in late embryonic worms.
experiment encode accession: ENCSR304RME
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR430JDM
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB347GAW
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex late embryo insertion targeting C. elegans pha-4

value: whole organisms

value: not applicable

value: pooled male and female

value: late embryonic

value: CGC

value: ENCBS280EED at ENCODE; https://www.encodeproject.org/ENCBS280EED/


title: Control ChIP-seq from whole organism (ENCLB348UKE)

description:
https://www.encodeproject.org/experiments/ENCSR641PEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Kr-eGFP fusion proteins.
experiment encode accession: ENCSR641PEJ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB348UKE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Kr-GFP mixed sex embryo (0-10 hours) insertion targeting D. melanogaster Kr

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Kr

value: embryonic

value: 0-10 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS890IVV at ENCODE; https://www.encodeproject.org/ENCBS890IVV/


title: Control ChIP-seq from whole organism (ENCLB437IGG)

description:
https://www.encodeproject.org/experiments/ENCSR576JSM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ftz-f1-eGFP fusion proteins.
experiment encode accession: ENCSR576JSM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB437IGG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ftz-f1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ftz-f1

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ftz-f1

value: 0-24 hour

value: ENCBS789BHL at ENCODE; https://www.encodeproject.org/ENCBS789BHL/


title: TF ChIP-seq from whole organism (ENCLB135FZJ)

description:
https://www.encodeproject.org/experiments/ENCSR145EYH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against NHR-84 in L1 larva worms.
experiment encode accession: ENCSR145EYH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR583FIC
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB135FZJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP357 (unc-119(tm4063) III; wgIs357) mixed sex L1 larva insertion targeting C. elegans nhr-84

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-84

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS420VEE at ENCODE; https://www.encodeproject.org/ENCBS420VEE/


title: TF ChIP-seq from whole organism (ENCLB064XPD)

description:
https://www.encodeproject.org/experiments/ENCSR318DTY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-fkh-10 in L4 larva worms.
experiment encode accession: ENCSR318DTY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR288FNX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB064XPD
size range: 150-350

value: whole organisms

value: not applicable

value: pooled male and female

value: L4 larva

value: CGC

value: ENCBS785OTU at ENCODE; https://www.encodeproject.org/ENCBS785OTU/


title: Control ChIP-seq from whole organism (ENCLB729ZRU)

description:
https://www.encodeproject.org/experiments/ENCSR640GRU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR640GRU
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB729ZRU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Nf-YB-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Nf-YB

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Nf-YB

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS322QTN at ENCODE; https://www.encodeproject.org/ENCBS322QTN/


title: TF ChIP-seq from whole organism (ENCLB037XMW)

description:
https://www.encodeproject.org/experiments/ENCSR641KZS/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(spl)m5-eGFP fusion proteins.
experiment encode accession: ENCSR641KZS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR158HVZ
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB037XMW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m5-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster E(spl)m5-HLH

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m5

value: 0-12 hour

value: ENCBS447QNH at ENCODE; https://www.encodeproject.org/ENCBS447QNH/


title: Control ChIP-seq from whole organism (ENCLB696RZL)

description:
https://www.encodeproject.org/experiments/ENCSR761BHV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR761BHV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB696RZL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8290 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ADD1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ADD1

value: 0-24 hour

value: ENCBS174UXM at ENCODE; https://www.encodeproject.org/ENCBS174UXM/


title: SHR+Allisartan3

value: heart


title: Control ChIP-seq from whole organism (ENCLB402ZAP)

description:
https://www.encodeproject.org/experiments/ENCSR145MWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR145MWJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB402ZAP
size range: 150-350

source_name: Caenorhabditis elegans strain YL398 (unc119(ed3)III; vrIs55[pGES-1::LIN-35::GFP FLAG: LIN-35 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans lin-35

value: whole organisms

value: not applicable

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS868YCP at ENCODE; https://www.encodeproject.org/ENCBS868YCP/


title: WKY2


title: Control ChIP-seq from whole organism (ENCLB800BUV)

description:
https://www.encodeproject.org/experiments/ENCSR763WTN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dmrt93B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR763WTN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB800BUV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dmrt93B-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dmrt93B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dmrt93B

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS212ETR at ENCODE; https://www.encodeproject.org/ENCBS212ETR/


title: TF ChIP-seq from whole organism (ENCLB608VOX)

description:
https://www.encodeproject.org/experiments/ENCSR864SNW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr51-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR864SNW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR728LLK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB608VOX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dhr51-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hr51

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr51

value: embryonic

value: ENCBS212PUJ at ENCODE; https://www.encodeproject.org/ENCBS212PUJ/


title: TF ChIP-seq from whole organism (ENCLB624LUH)

description:
https://www.encodeproject.org/experiments/ENCSR219QTR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in L1 larva worms.
experiment encode accession: ENCSR219QTR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR675OOS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB624LUH
size range: 150-350

source_name: Caenorhabditis elegans strain YL425 (unc-119(ed3)III; vrIs69[pDPL-1::DPL-1::GFP FLAG: DPL-1 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans dpl-1

value: CGC

value: ENCBS001DOR at ENCODE; https://www.encodeproject.org/ENCBS001DOR/


title: TF ChIP-seq from whole organism (ENCLB504SRE)

description:
https://www.encodeproject.org/experiments/ENCSR758FTK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(spl)m-delta-eGFP fusion proteins.
experiment encode accession: ENCSR758FTK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR378LQR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB504SRE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m-delta-GFP mixed sex embryo (2-12 hours) insertion targeting D. melanogaster E(spl)mdelta-HLH

value: HLHmδ

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m-delta

value: ENCBS096JEK at ENCODE; https://www.encodeproject.org/ENCBS096JEK/


title: SHR+Allisartan2

source_name: heart

value: heart


title: TF ChIP-seq from whole organism (ENCLB955ENB)

description:
https://www.encodeproject.org/experiments/ENCSR551YOZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1620-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR551YOZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR342HXN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB955ENB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1620-GFP female adult insertion targeting D. melanogaster CG1620

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1620

value: female

value: adult

value: unknown

value: ENCBS730FQA at ENCODE; https://www.encodeproject.org/ENCBS730FQA/


title: TF ChIP-seq from whole organism (ENCLB836UAT)

description:
https://www.encodeproject.org/experiments/ENCSR690WSD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr46-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR690WSD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343CPV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB836UAT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hr3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hr3

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr3

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS858XDA at ENCODE; https://www.encodeproject.org/ENCBS858XDA/


title: TF ChIP-seq from whole organism (ENCLB700MWB)

description:
https://www.encodeproject.org/experiments/ENCSR864SNW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr51-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR864SNW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR728LLK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB700MWB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr51

value: embryonic

value: ENCBS167MZL at ENCODE; https://www.encodeproject.org/ENCBS167MZL/


title: WKY3

value: heart


title: Control ChIP-seq from whole organism (ENCLB993GQM)

description:
https://www.encodeproject.org/experiments/ENCSR533CSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F49E8.2-eGFP fusion proteins.
experiment encode accession: ENCSR533CSZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB993GQM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP383 (unc-119(tm4063) III; wgIs383) hermaphrodite L4 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans oef-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F49E8.2

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS893VTT at ENCODE; https://www.encodeproject.org/ENCBS893VTT/


title: Control ChIP-seq from whole organism (ENCLB079ICZ)

description:
https://www.encodeproject.org/experiments/ENCSR219ATU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEY-2-eGFP fusion proteins.
experiment encode accession: ENCSR219ATU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB079ICZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva insertion targeting C. elegans cey-2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEY-2

value: unknown

value: ENCBS838ODK at ENCODE; https://www.encodeproject.org/ENCBS838ODK/


title: TF ChIP-seq from whole organism (ENCLB021JLN)

description:
https://www.encodeproject.org/experiments/ENCSR864SNW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr51-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR864SNW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR728LLK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB021JLN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr51

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS626MYG at ENCODE; https://www.encodeproject.org/ENCBS626MYG/


title: Control ChIP-seq from whole organism (ENCLB596NIB)

description:
https://www.encodeproject.org/experiments/ENCSR316CFG/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR316CFG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB596NIB
size range: 150-350
instrument models: Illumina Genome Analyzer IIx,Illumina Genome Analyzer

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L2 larva whole organism

value: not applicable

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS087JPO at ENCODE; https://www.encodeproject.org/ENCBS087JPO/


title: TF ChIP-seq from whole organism (ENCLB088VDN)

description:
https://www.encodeproject.org/experiments/ENCSR761TCG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing su(Hw)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR761TCG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR564FZY
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB088VDN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain SuHw-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster su(Hw)

value: su(Hw)

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to su(Hw)

value: embryonic

value: ENCBS067BJP at ENCODE; https://www.encodeproject.org/ENCBS067BJP/


title: SHR2

value: heart


title: TF ChIP-seq from whole organism (ENCLB586MXQ)

description:
https://www.encodeproject.org/experiments/ENCSR755ZOR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG45071-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR755ZOR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR034KIV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB586MXQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6854-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CTPsyn

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG45071

value: ENCBS333IMC at ENCODE; https://www.encodeproject.org/ENCBS333IMC/


title: TF ChIP-seq from whole organism (ENCLB559OMC)

description:
https://www.encodeproject.org/experiments/ENCSR145EYH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against NHR-84 in L1 larva worms.
experiment encode accession: ENCSR145EYH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR583FIC
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB559OMC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP357 (unc-119(tm4063) III; wgIs357) mixed sex L1 larva insertion targeting C. elegans nhr-84

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-84

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder

value: ENCBS193LLX at ENCODE; https://www.encodeproject.org/ENCBS193LLX/


title: TF ChIP-seq from whole organism (ENCLB660CKH)

description:
https://www.encodeproject.org/experiments/ENCSR755ZOR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG45071-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR755ZOR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR034KIV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB660CKH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS603SGH at ENCODE; https://www.encodeproject.org/ENCBS603SGH/


title: TF ChIP-seq from whole organism (ENCLB089JYH)

description:
https://www.encodeproject.org/experiments/ENCSR522TSE/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing EGL-13-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522TSE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR058URE
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB089JYH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain GOU883 hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans egl-13

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-13

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS944FPO at ENCODE; https://www.encodeproject.org/ENCBS944FPO/


title: TF ChIP-seq from whole organism (ENCLB878CEV)

description:
https://www.encodeproject.org/experiments/ENCSR219QTR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in L1 larva worms.
experiment encode accession: ENCSR219QTR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR675OOS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB878CEV
size range: 150-350

value: whole organism

value: whole organisms

value: pooled male and female

value: Michael Snyder, Stanford

value: CGC

value: ENCBS364QYX at ENCODE; https://www.encodeproject.org/ENCBS364QYX/


title: TF ChIP-seq from whole organism (ENCLB671QGN)

description:
https://www.encodeproject.org/experiments/ENCSR548EHZ/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR548EHZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR184FJG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB671QGN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain foxo-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster foxo

value: foxo

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to foxo

value: wandering third instar larva

value: unknown

value: ENCBS735WIT at ENCODE; https://www.encodeproject.org/ENCBS735WIT/


title: Control ChIP-seq from whole organism (ENCLB475RZV)

description:
https://www.encodeproject.org/experiments/ENCSR431TEW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG6813-eGFP fusion proteins.
experiment encode accession: ENCSR431TEW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB475RZV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6813-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG6813

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6813

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS856YHV at ENCODE; https://www.encodeproject.org/ENCBS856YHV/


title: TF ChIP-seq from whole organism (ENCLB440TAL)

description:
https://www.encodeproject.org/experiments/ENCSR690WSD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr46-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR690WSD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343CPV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB440TAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr3

value: ENCBS396WRI at ENCODE; https://www.encodeproject.org/ENCBS396WRI/


title: Control ChIP-seq from whole organism (ENCLB277ZLR)

description:
https://www.encodeproject.org/experiments/ENCSR855KRW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Mio-eGFP fusion proteins.
experiment encode accession: ENCSR855KRW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB277ZLR
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Mio-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Mondo

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mio

value: pooled male and female

value: ENCBS946SYH at ENCODE; https://www.encodeproject.org/ENCBS946SYH/


title: WKY1

value: heart


title: TF ChIP-seq from whole organism (ENCLB337HPL)

description:
https://www.encodeproject.org/experiments/ENCSR517JNQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FAX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517JNQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563MPC
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB337HPL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP164 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans fax-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FAX-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS885BNP at ENCODE; https://www.encodeproject.org/ENCBS885BNP/


title: TF ChIP-seq from whole organism (ENCLB049COE)

description:
https://www.encodeproject.org/experiments/ENCSR758FTK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(spl)m-delta-eGFP fusion proteins.
experiment encode accession: ENCSR758FTK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR378LQR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB049COE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: HLHmδ

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m-delta

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS713YOA at ENCODE; https://www.encodeproject.org/ENCBS713YOA/


title: TF ChIP-seq from whole organism (ENCLB625SQN)

description:
https://www.encodeproject.org/experiments/ENCSR690WSD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr46-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR690WSD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343CPV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB625SQN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr3

value: pooled male and female

value: 0-24 hour

value: ENCBS261NOG at ENCODE; https://www.encodeproject.org/ENCBS261NOG/


title: Control ChIP-seq from whole organism (ENCLB087PXX)

description:
https://www.encodeproject.org/experiments/ENCSR431JLY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG6854-eGFP fusion proteins.
experiment encode accession: ENCSR431JLY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-02-01
lab: Kevin White, UChicago
library encode accession: ENCLB087PXX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6854-GFP mixed sex prepupa insertion targeting D. melanogaster CTPsyn

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6854

value: prepupa

value: unknown

value: ENCBS630TIZ at ENCODE; https://www.encodeproject.org/ENCBS630TIZ/


title: TF ChIP-seq from whole organism (ENCLB078ZWB)

description:
https://www.encodeproject.org/experiments/ENCSR517JNQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FAX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517JNQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563MPC
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB078ZWB
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FAX-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS010TSJ at ENCODE; https://www.encodeproject.org/ENCBS010TSJ/


title: Control ChIP-seq from whole organism (ENCLB437KVO)

description:
https://www.encodeproject.org/experiments/ENCSR638MNR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fd64A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR638MNR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB437KVO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd64A-GFP mixed sex embryo (8-14 hours) insertion targeting D. melanogaster FoxL1

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd64A

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS953ISI at ENCODE; https://www.encodeproject.org/ENCBS953ISI/


title: Control ChIP-seq from whole organism (ENCLB301ZKD)

description:
https://www.encodeproject.org/experiments/ENCSR219ATU/
***************
biological replicate number: 1
technical replicate number: 2
description: This is the ChIP-seq control of transgenic worms expressing CEY-2-eGFP fusion proteins.
experiment encode accession: ENCSR219ATU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB301ZKD
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEY-2

value: L4 larva

value: unknown

value: ENCBS838ODK at ENCODE; https://www.encodeproject.org/ENCBS838ODK/


title: Control ChIP-seq from whole organism (ENCLB411VUS)

description:
https://www.encodeproject.org/experiments/ENCSR842PNM/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-4-eGFP fusion proteins.
experiment encode accession: ENCSR842PNM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB411VUS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP523 (unc-119(tm4063) III; wgIs523) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hlh-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-4

value: hermaphrodite

value: L1 larva

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS185IHU at ENCODE; https://www.encodeproject.org/ENCBS185IHU/


title: TF ChIP-seq from whole organism (ENCLB648LMD)

description:
https://www.encodeproject.org/experiments/ENCSR861XSB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing mod(mdg4)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR861XSB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR992ICQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB648LMD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain mod(mdg4)-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster mod(mdg4)

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to mod(mdg4)

value: pooled male and female

value: wandering third instar larva

value: ENCBS495HAU at ENCODE; https://www.encodeproject.org/ENCBS495HAU/


title: Control ChIP-seq from whole organism (ENCLB712FPN)

description:
https://www.encodeproject.org/experiments/ENCSR530XBH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C08G9.2-eGFP fusion proteins.
experiment encode accession: ENCSR530XBH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB712FPN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP513 (unc-119(tm4063) III; wgIs513) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans C08G9.2

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C08G9.2

value: late embryonic

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS616EEM at ENCODE; https://www.encodeproject.org/ENCBS616EEM/


title: Control ChIP-seq from whole organism (ENCLB838ZVN)

description:
https://www.encodeproject.org/experiments/ENCSR757RQP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Su(var)2-10-eGFP fusion proteins.
experiment encode accession: ENCSR757RQP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB838ZVN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Suvar2-10-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Su(var)2-10

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)2-10

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS215JZQ at ENCODE; https://www.encodeproject.org/ENCBS215JZQ/


title: TF ChIP-seq from whole organism (ENCLB777XUP)

description:
https://www.encodeproject.org/experiments/ENCSR548EHZ/
***************
biological replicate number: 6
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR548EHZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR184FJG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB777XUP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: foxo

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to foxo

value: unknown

value: ENCBS689DMT at ENCODE; https://www.encodeproject.org/ENCBS689DMT/


title: TF ChIP-seq from whole organism (ENCLB084VAN)

description:
https://www.encodeproject.org/experiments/ENCSR861XSB/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing mod(mdg4)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR861XSB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR992ICQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB084VAN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to mod(mdg4)

value: pooled male and female

value: wandering third instar larva

value: ENCBS926EWA at ENCODE; https://www.encodeproject.org/ENCBS926EWA/


title: TF ChIP-seq from whole organism (ENCLB545EGD)

description:
https://www.encodeproject.org/experiments/ENCSR143DRQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-11 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR143DRQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR567JAU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB545EGD
size range: 150-350

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex mixed stage (embryo) insertion targeting C. elegans ztf-11

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS019AVX at ENCODE; https://www.encodeproject.org/ENCBS019AVX/


title: TF ChIP-seq from whole organism (ENCLB692VTS)

description:
https://www.encodeproject.org/experiments/ENCSR312NKK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in young adult worms.
experiment encode accession: ENCSR312NKK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR528YHA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB692VTS
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex young adult insertion targeting C. elegans pha-4

value: young adult

value: ENCBS921MPR at ENCODE; https://www.encodeproject.org/ENCBS921MPR/


title: TF ChIP-seq from whole organism (ENCLB046BXZ)

description:
https://www.encodeproject.org/experiments/ENCSR312NKK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in young adult worms.
experiment encode accession: ENCSR312NKK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR528YHA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB046BXZ
size range: 150-350

value: ENCBS741ZBX at ENCODE; https://www.encodeproject.org/ENCBS741ZBX/


title: TF ChIP-seq from whole organism (ENCLB526VLR)

description:
https://www.encodeproject.org/experiments/ENCSR143DRQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-11 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR143DRQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR567JAU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB526VLR
size range: 150-350

value: whole organism

value: ENCBS517HPJ at ENCODE; https://www.encodeproject.org/ENCBS517HPJ/


title: TF ChIP-seq from whole organism (ENCLB297FPK)

description:
https://www.encodeproject.org/experiments/ENCSR755ZOR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG45071-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR755ZOR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR034KIV
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB297FPK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG45071

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS137JFH at ENCODE; https://www.encodeproject.org/ENCBS137JFH/


title: TF ChIP-seq from whole organism (ENCLB298TVU)

description:
https://www.encodeproject.org/experiments/ENCSR637GDK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Su(var)2-10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR637GDK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR757RQP
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB298TVU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)2-10

value: pooled male and female

value: ENCBS583NNA at ENCODE; https://www.encodeproject.org/ENCBS583NNA/


title: Control ChIP-seq from whole organism (ENCLB200RJW)

description:
https://www.encodeproject.org/experiments/ENCSR637IJM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8301-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR637IJM
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB200RJW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8301 mixed sex pupa (48 hours) insertion targeting D. melanogaster CG8301

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8301

value: pupa

value: 48 hour

value: ENCBS622BMW at ENCODE; https://www.encodeproject.org/ENCBS622BMW/


title: TF ChIP-seq from whole organism (ENCLB033UBP)

description:
https://www.encodeproject.org/experiments/ENCSR507XRY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-34-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR507XRY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR775TWW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB033UBP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP524 (unc-119(tm4063) III; wgIs524) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-34

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-34

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS577VHX at ENCODE; https://www.encodeproject.org/ENCBS577VHX/


title: TF ChIP-seq from whole organism (ENCLB811PQY)

description:
https://www.encodeproject.org/experiments/ENCSR551YOZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1620-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR551YOZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR342HXN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB811PQY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1620-GFP female adult insertion targeting D. melanogaster CG1620

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1620

value: female

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS853ATP at ENCODE; https://www.encodeproject.org/ENCBS853ATP/


title: TF ChIP-seq from whole organism (ENCLB457ZPG)

description:
https://www.encodeproject.org/experiments/ENCSR522TSE/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing EGL-13-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522TSE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR058URE
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB457ZPG
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-13

value: L1 larva

value: L1 larva starved after bleaching

value: ENCBS492OPP at ENCODE; https://www.encodeproject.org/ENCBS492OPP/


title: Control ChIP-seq from whole organism (ENCLB160NVD)

description:
https://www.encodeproject.org/experiments/ENCSR143YHO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR143YHO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB160NVD
size range: 150-350

source_name: Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L2 larva insertion targeting C. elegans zag-1

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS453TQN at ENCODE; https://www.encodeproject.org/ENCBS453TQN/


title: Control ChIP-seq from whole organism (ENCLB863GPH)

description:
https://www.encodeproject.org/experiments/ENCSR143YHO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR143YHO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB863GPH
size range: 150-350

value: whole organisms

value: not applicable

value: ENCBS177SWX at ENCODE; https://www.encodeproject.org/ENCBS177SWX/


title: Control ChIP-seq from whole organism (ENCLB707SAR)

description:
https://www.encodeproject.org/experiments/ENCSR851XBU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing woc-eGFP fusion proteins.
experiment encode accession: ENCSR851XBU
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB707SAR
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain woc-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster woc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to woc

value: wandering third instar larva

value: Kevin White, UChicago

value: ENCBS707IAI at ENCODE; https://www.encodeproject.org/ENCBS707IAI/


title: Control ChIP-seq from whole organism (ENCLB088YJY)

description:
https://www.encodeproject.org/experiments/ENCSR142DMI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR142DMI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB088YJY
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex young adult whole organism

value: whole organism

value: young adult

value: ENCBS762YAV at ENCODE; https://www.encodeproject.org/ENCBS762YAV/


title: Control ChIP-seq from whole organism (ENCLB091RYZ)

description:
https://www.encodeproject.org/experiments/ENCSR038TET/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR038TET
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB091RYZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP416 (unc-119(tm4063) III; wgIs416) mixed sex L4 larva insertion targeting C. elegans ceh-62

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to R06F6.6

value: L4 larva

value: Michael Snyder

value: ENCBS040FOG at ENCODE; https://www.encodeproject.org/ENCBS040FOG/


title: TF ChIP-seq from whole organism (ENCLB486KQQ)

description:
https://www.encodeproject.org/experiments/ENCSR423NEB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR423NEB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR830XXA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB486KQQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14710 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG14710

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14710

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White

value: ENCBS742RBT at ENCODE; https://www.encodeproject.org/ENCBS742RBT/


title: Control ChIP-seq from whole organism (ENCLB215SVM)

description:
https://www.encodeproject.org/experiments/ENCSR851JOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing corto-eGFP fusion proteins.
experiment encode accession: ENCSR851JOQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB215SVM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain corto-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster corto

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to corto

value: 0-24 hour

value: ENCBS094CNF at ENCODE; https://www.encodeproject.org/ENCBS094CNF/


title: TF ChIP-seq from whole organism (ENCLB116GAM)

description:
https://www.encodeproject.org/experiments/ENCSR848GYF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG16863-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR848GYF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964VKV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB116GAM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG16863-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG16863

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG16863

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS509WBO at ENCODE; https://www.encodeproject.org/ENCBS509WBO/


title: TF ChIP-seq from whole organism (ENCLB140TCE)

description:
https://www.encodeproject.org/experiments/ENCSR813WNF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PAG-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR813WNF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR222HUE
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB140TCE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP154 (unc-119(ed3) III; wgIs154) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans pag-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAG-3

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS814QFX at ENCODE; https://www.encodeproject.org/ENCBS814QFX/


title: Control ChIP-seq from whole organism (ENCLB660RRQ)

description:
https://www.encodeproject.org/experiments/ENCSR537CBN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing br-eGFP fusion proteins.
experiment encode accession: ENCSR537CBN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB660RRQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain br-rj-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster br

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RJ

value: pooled male and female

value: wandering third instar larva

value: Kevin White

value: ENCBS746IMJ at ENCODE; https://www.encodeproject.org/ENCBS746IMJ/


title: Control ChIP-seq from whole organism (ENCLB482YPA)

description:
https://www.encodeproject.org/experiments/ENCSR849VNO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tai-eGFP fusion proteins.
experiment encode accession: ENCSR849VNO
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB482YPA
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain tai-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster tai

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tai

value: Kevin White, UChicago

value: ENCBS552FWC at ENCODE; https://www.encodeproject.org/ENCBS552FWC/


title: Control ChIP-seq from whole organism (ENCLB436MPG)

description:
https://www.encodeproject.org/experiments/ENCSR829OFH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing LIR-3-eGFP fusion proteins.
experiment encode accession: ENCSR829OFH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB436MPG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP312 (unc-119(ed3) III; wgIs312) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans lir-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIR-3

value: hermaphrodite

value: L1 larva

value: unknown

value: L1 larva starved after bleaching

value: ENCBS090PES at ENCODE; https://www.encodeproject.org/ENCBS090PES/


title: TF ChIP-seq from whole organism (ENCLB155FSP)

description:
https://www.encodeproject.org/experiments/ENCSR423NEB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR423NEB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR830XXA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB155FSP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14710

value: embryonic

value: 0-14 hour

value: ENCBS178HMI at ENCODE; https://www.encodeproject.org/ENCBS178HMI/


title: Control ChIP-seq from whole organism (ENCLB396GPT)

description:
https://www.encodeproject.org/experiments/ENCSR637IJM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8301-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR637IJM
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB396GPT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8301

value: pooled male and female

value: pupa

value: 48 hour

value: Kevin White

value: ENCBS906AKV at ENCODE; https://www.encodeproject.org/ENCBS906AKV/


title: TF ChIP-seq from whole organism (ENCLB117BXW)

description:
https://www.encodeproject.org/experiments/ENCSR423NEB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR423NEB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR830XXA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB117BXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: ENCBS571YME at ENCODE; https://www.encodeproject.org/ENCBS571YME/


title: Control ChIP-seq from whole organism (ENCLB765BPK)

description:
https://www.encodeproject.org/experiments/ENCSR143TBI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MED-1-eGFP fusion proteins.
experiment encode accession: ENCSR143TBI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB765BPK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP391 (unc-119(ed3) III; wgIs391(med-1::TY1 EGFP FLAG C; unc-119(+))) hermaphrodite midembryo insertion targeting C. elegans med-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MED-1

value: hermaphrodite

value: midembryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS622BUD at ENCODE; https://www.encodeproject.org/ENCBS622BUD/


title: Control ChIP-seq from whole organism (ENCLB509HMA)

description:
https://www.encodeproject.org/experiments/ENCSR136QRF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR136QRF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB509HMA
size range: 150-350

source_name: Caenorhabditis elegans strain OP327 (unc-119(ed3) III; wgIs327) mixed sex mixed stage (embryo) insertion targeting C. elegans zip-8

value: whole organisms

value: not applicable

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS245VEL at ENCODE; https://www.encodeproject.org/ENCBS245VEL/


title: TF ChIP-seq from whole organism (ENCLB704ZJY)

description:
https://www.encodeproject.org/experiments/ENCSR360YKV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cnc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR360YKV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR998VHS
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB704ZJY
fragmentation methods: sonication (Bioruptor generic)
size range: 325-425
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Drosophila melanogaster strain cnc-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster cnc

value: cnc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cnc

value: pooled male and female

value: wandering third instar larva

value: Kevin White

value: ENCBS899MFX at ENCODE; https://www.encodeproject.org/ENCBS899MFX/


title: TF ChIP-seq from whole organism (ENCLB471FNS)

description:
https://www.encodeproject.org/experiments/ENCSR848GYF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG16863-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR848GYF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964VKV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB471FNS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG16863

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS504EJK at ENCODE; https://www.encodeproject.org/ENCBS504EJK/


title: TF ChIP-seq from whole organism (ENCLB996VOG)

description:
https://www.encodeproject.org/experiments/ENCSR507XRY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-34-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR507XRY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR775TWW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB996VOG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-34

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS719OLY at ENCODE; https://www.encodeproject.org/ENCBS719OLY/


title: Control ChIP-seq from whole organism (ENCLB008PQY)

description:
https://www.encodeproject.org/experiments/ENCSR754WSC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR754WSC
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB008PQY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain EcR-GFP mixed sex pupa (24 hours) whole organism stably expressing C-terminal eGFP-tagged EcR

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to EcR

value: pooled male and female

value: pupa

value: 24 hour

value: Kevin White

value: ENCBS757JGT at ENCODE; https://www.encodeproject.org/ENCBS757JGT/


title: Control ChIP-seq from whole organism (ENCLB144KEQ)

description:
https://www.encodeproject.org/experiments/ENCSR136QRF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR136QRF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB144KEQ
size range: 150-350

value: whole organisms

value: not applicable

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS646TJA at ENCODE; https://www.encodeproject.org/ENCBS646TJA/


title: TF ChIP-seq from whole organism (ENCLB312TKY)

description:
https://www.encodeproject.org/experiments/ENCSR143VPY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR143VPY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR927LZU
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB312TKY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: unknown

value: Michael Snyder

value: ENCBS469VSG at ENCODE; https://www.encodeproject.org/ENCBS469VSG/


title: TF ChIP-seq from whole organism (ENCLB633ZWW)

description:
https://www.encodeproject.org/experiments/ENCSR848GYF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG16863-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR848GYF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964VKV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB633ZWW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG16863

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS991DDD at ENCODE; https://www.encodeproject.org/ENCBS991DDD/


title: Control ChIP-seq from whole organism (ENCLB842CGZ)

description:
https://www.encodeproject.org/experiments/ENCSR754KJL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG18262-eGFP fusion proteins.
experiment encode accession: ENCSR754KJL
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB842CGZ
size range: 200-800

source_name: Drosophila melanogaster strain CG18262 mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG18262

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18262

value: pooled male and female

value: Kevin White

value: ENCBS394USG at ENCODE; https://www.encodeproject.org/ENCBS394USG/


title: Control ChIP-seq from whole organism (ENCLB422OAA)

description:
https://www.encodeproject.org/experiments/ENCSR515JDZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-179-eGFP fusion proteins.
experiment encode accession: ENCSR515JDZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB422OAA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP465 (unc-119(tm4063) III; wgIs465) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-179

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-179

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS389LVN at ENCODE; https://www.encodeproject.org/ENCBS389LVN/


title: TF ChIP-seq from whole organism (ENCLB163YJT)

description:
https://www.encodeproject.org/experiments/ENCSR279HMO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing crp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR279HMO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR040UNE
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB163YJT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain crp-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster crp

value: crp

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to crp

value: embryonic

value: 0-16 hour

value: ENCBS554KLZ at ENCODE; https://www.encodeproject.org/ENCBS554KLZ/


title: Control ChIP-seq from whole organism (ENCLB324KDL)

description:
https://www.encodeproject.org/experiments/ENCSR038TET/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR038TET
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB324KDL
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to R06F6.6

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS764CYN at ENCODE; https://www.encodeproject.org/ENCBS764CYN/


title: Control ChIP-seq from whole organism (ENCLB254MSN)

description:
https://www.encodeproject.org/experiments/ENCSR142DMI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR142DMI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB254MSN
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex young adult whole organism

value: not applicable

value: young adult

value: CGC

value: ENCBS781IYB at ENCODE; https://www.encodeproject.org/ENCBS781IYB/


title: TF ChIP-seq from whole organism (ENCLB586VCN)

description:
https://www.encodeproject.org/experiments/ENCSR819NBT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing TBX-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR819NBT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR183CDG
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB586VCN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP636 (unc-119(tm4063) III; wgIs636) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans tbx-9

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-9

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS603YAT at ENCODE; https://www.encodeproject.org/ENCBS603YAT/


title: TF ChIP-seq from whole organism (ENCLB982CLD)

description:
https://www.encodeproject.org/experiments/ENCSR637GDK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Su(var)2-10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR637GDK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR757RQP
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB982CLD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Suvar2-10-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Su(var)2-10

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)2-10

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS170JZN at ENCODE; https://www.encodeproject.org/ENCBS170JZN/


title: TF ChIP-seq from whole organism (ENCLB881EBB)

description:
https://www.encodeproject.org/experiments/ENCSR813WNF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PAG-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR813WNF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR222HUE
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB881EBB
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAG-3

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: ENCBS510JFB at ENCODE; https://www.encodeproject.org/ENCBS510JFB/


title: TF ChIP-seq from whole organism (ENCLB357KHX)

description:
https://www.encodeproject.org/experiments/ENCSR681YMA/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pho-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR681YMA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR820IUK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB357KHX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pho-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pho

value: pho

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pho

value: ENCBS550JZF at ENCODE; https://www.encodeproject.org/ENCBS550JZF/


title: Control ChIP-seq from whole organism (ENCLB956YBK)

description:
https://www.encodeproject.org/experiments/ENCSR973ZVP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing REF-2-eGFP fusion proteins.
experiment encode accession: ENCSR973ZVP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB956YBK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP520 (unc-119(tm4063) III; wgIs520) hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans ref-2

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REF-2

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS606EUX at ENCODE; https://www.encodeproject.org/ENCBS606EUX/


title: TF ChIP-seq from whole organism (ENCLB985XUG)

description:
https://www.encodeproject.org/experiments/ENCSR279HMO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing crp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR279HMO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR040UNE
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB985XUG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: crp

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to crp

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS711HXB at ENCODE; https://www.encodeproject.org/ENCBS711HXB/


title: TF ChIP-seq from whole organism (ENCLB837FZE)

description:
https://www.encodeproject.org/experiments/ENCSR373BIM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing shn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR373BIM
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR480EZU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB837FZE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster shn

value: shn

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to shn

value: 0-24 hour

value: ENCBS981ILX at ENCODE; https://www.encodeproject.org/ENCBS981ILX/


title: TF ChIP-seq from whole organism (ENCLB324XXJ)

description:
https://www.encodeproject.org/experiments/ENCSR633IKC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ssrp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR633IKC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR524HLR
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB324XXJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Ssrp

value: Ssrp

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ssrp

value: ENCBS437ZOZ at ENCODE; https://www.encodeproject.org/ENCBS437ZOZ/


title: TF ChIP-seq from whole organism (ENCLB253CTH)

description:
https://www.encodeproject.org/experiments/ENCSR373BIM/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing shn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR373BIM
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR480EZU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB253CTH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS052RJF at ENCODE; https://www.encodeproject.org/ENCBS052RJF/


title: TF ChIP-seq from whole organism (ENCLB675OSU)

description:
https://www.encodeproject.org/experiments/ENCSR489SGT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DSC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR489SGT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR190ONG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB675OSU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP522 (unc-119(tm4063) III; wgIs522) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans dsc-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DSC-1

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS062VOG at ENCODE; https://www.encodeproject.org/ENCBS062VOG/


title: TF ChIP-seq from whole organism (ENCLB807PFD)

description:
https://www.encodeproject.org/experiments/ENCSR216ZJL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR216ZJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR528CPO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB807PFD
size range: 150-350

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex mixed stage (embryo) insertion targeting C. elegans lsy-2

value: whole organism

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS354BQD at ENCODE; https://www.encodeproject.org/ENCBS354BQD/


title: TF ChIP-seq from whole organism (ENCLB121EKW)

description:
https://www.encodeproject.org/experiments/ENCSR360YKV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cnc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR360YKV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR998VHS
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB121EKW
fragmentation methods: sonication (Bioruptor generic)
size range: 325-450
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

value: cnc

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cnc

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS976XLB at ENCODE; https://www.encodeproject.org/ENCBS976XLB/


title: TF ChIP-seq from whole organism (ENCLB084HCZ)

description:
https://www.encodeproject.org/experiments/ENCSR489SGT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DSC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR489SGT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR190ONG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB084HCZ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DSC-1

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS752IUH at ENCODE; https://www.encodeproject.org/ENCBS752IUH/