title: Control ChIP-seq from whole organism (ENCLB070RGE)

description:
https://www.encodeproject.org/experiments/ENCSR095URQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lin-32-eGFP fusion proteins.
experiment encode accession: ENCSR095URQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB070RGE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-32.

value: mixed stage (embryonic)

value: 3 hour

value: egg bleaching

value: ENCBS651SWJ at ENCODE; https://www.encodeproject.org/ENCBS651SWJ/


title: Control ChIP-seq from whole organism (ENCLB498KJT)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR100DIV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C38D4.7-eGFP fusion proteins.
experiment encode accession: ENCSR100DIV
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB498KJT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP708 (unc-119(tm4063); wgIs708 [C38D4.7::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex late embryo (4 hours) using egg bleaching insertion targeting C. elegans C38D4.7

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C38D4.7.

tag: Sex

value: pooled male and female

tag: dev stage

value: late embryonic

tag: age

value: 4 hour

tag: lab

value: Valerie Reinke, Yale

tag: source

value: Valerie Reinke

tag: worm synchronization stage

tag: link

value: ENCBS363QQO at ENCODE; https://www.encodeproject.org/ENCBS363QQO/


title: Control ChIP-seq from whole organism (ENCLB228FXI)

description:
https://www.encodeproject.org/experiments/ENCSR760TJW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing B0035.1-eGFP fusion proteins.
experiment encode accession: ENCSR760TJW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB228FXI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain xtl1186 hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans znf-207

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to B0035.1

value: hermaphrodite

value: young adult

value: unknown

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS636IXW at ENCODE; https://www.encodeproject.org/ENCBS636IXW/


title: TF ChIP-seq from whole organism (ENCLB455GOR)

description:
https://www.encodeproject.org/experiments/ENCSR639CLM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SMA-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR639CLM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR490CWU
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB455GOR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain LW1254 (jjIs1254[Im486.2: pJKL723.2(sma-9C2::gfp+unc-119(+) ]; unc-119(ed4)) hermaphrodite L2 larva 22 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans sma-9

tag: antibody

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SMA-9

value: L2 larva

value: ENCBS001KRB at ENCODE; https://www.encodeproject.org/ENCBS001KRB/


title: TF ChIP-seq from whole organism (ENCLB404VUV)

description:
https://www.encodeproject.org/experiments/ENCSR938NRX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing IRX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR938NRX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR961THO
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB404VUV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP536 (unc-119(tm4063) III; wgIs536) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans irx-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to IRX-1

value: L1 larva

value: ENCBS024FKI at ENCODE; https://www.encodeproject.org/ENCBS024FKI/


title: Control ChIP-seq from whole organism (ENCLB285YHM)

description:
https://www.encodeproject.org/experiments/ENCSR051HCW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing B-H2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR051HCW
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB285YHM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain B-H2-GFP mixed sex embryo (6-22 hours) insertion targeting D. melanogaster B-H2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to B-H2

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS654KDB at ENCODE; https://www.encodeproject.org/ENCBS654KDB/


title: TF ChIP-seq from whole organism (ENCLB571XEJ)

description:
https://www.encodeproject.org/experiments/ENCSR639CLM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SMA-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR639CLM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR490CWU
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB571XEJ
fragmentation methods: sonication (generic microtip)

value: hermaphrodite

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS386KKW at ENCODE; https://www.encodeproject.org/ENCBS386KKW/


title: TF ChIP-seq from whole organism (ENCLB670VID)

description:
https://www.encodeproject.org/experiments/ENCSR438PSB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SDC-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR438PSB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR111NKF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB670VID
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP92 hermaphrodite late embryo 3.25 hours post synchronization using egg bleaching insertion targeting C. elegans sdc-2

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SDC-2

value: late embryonic

value: egg bleaching

value: ENCBS674MAV at ENCODE; https://www.encodeproject.org/ENCBS674MAV/


title: TF ChIP-seq from whole organism (ENCLB191HXE)

description:
https://www.encodeproject.org/experiments/ENCSR427JJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RNT-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR427JJZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR948SUV
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB191HXE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP462 (unc-119(tm4063) III; wgIs462) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans rnt-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RNT-1

value: ENCBS140EJB at ENCODE; https://www.encodeproject.org/ENCBS140EJB/


title: Control ChIP-seq from whole organism (ENCLB956ZJV)

description:
https://www.encodeproject.org/experiments/ENCSR345XQL/
***************
biological replicate number: 3
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing K12H6.12-eGFP fusion proteins.
experiment encode accession: ENCSR345XQL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB956ZJV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP214 (unc-119(ed3) III; wgIs214) mixed sex young adult (72 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans K12H6.12

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to K12H6.12.

value: pooled male and female

value: young adult

value: 72 hour

value: ENCBS537ZEU at ENCODE; https://www.encodeproject.org/ENCBS537ZEU/


title: Control ChIP-seq from whole organism (ENCLB764BOV)

description:
https://www.encodeproject.org/experiments/ENCSR934KWG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-90-eGFP fusion proteins.
experiment encode accession: ENCSR934KWG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB764BOV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP210 (unc-119(ed3) III; wgIs210) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-90

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-90

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS707TLZ at ENCODE; https://www.encodeproject.org/ENCBS707TLZ/


title: Control ChIP-seq from whole organism (ENCLB476LVZ)

description:
https://www.encodeproject.org/experiments/ENCSR333ZYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR333ZYI
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB476LVZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dp-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dp

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dp

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS377DMJ at ENCODE; https://www.encodeproject.org/ENCBS377DMJ/


title: TF ChIP-seq from whole organism (ENCLB838JBW)

description:
https://www.encodeproject.org/experiments/ENCSR438PSB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SDC-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR438PSB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR111NKF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB838JBW
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SDC-2

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS449LUV at ENCODE; https://www.encodeproject.org/ENCBS449LUV/


title: Control ChIP-seq from whole organism (ENCLB231NJV)

description:
https://www.encodeproject.org/experiments/ENCSR345XQL/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing K12H6.12-eGFP fusion proteins.
experiment encode accession: ENCSR345XQL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB231NJV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to K12H6.12.

value: pooled male and female

value: young adult

value: 72 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS122TGC at ENCODE; https://www.encodeproject.org/ENCBS122TGC/


title: Control ChIP-seq from whole organism (ENCLB522LYC)

description:
https://www.encodeproject.org/experiments/ENCSR174KFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17385-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR174KFQ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB522LYC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17385-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG17385

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17385

value: embryonic

value: ENCBS510VED at ENCODE; https://www.encodeproject.org/ENCBS510VED/


title: TF ChIP-seq from whole organism (ENCLB955PYW)

description:
https://www.encodeproject.org/experiments/ENCSR753PGF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIM-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR753PGF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR194OUP
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB955PYW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP388 (unc-119(ed3) III; wgIs388) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans lim-6

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIM-6

value: hermaphrodite

value: late embryonic

value: unknown

value: ENCBS106NRA at ENCODE; https://www.encodeproject.org/ENCBS106NRA/


title: TF ChIP-seq from whole organism (ENCLB029KUD)

description:
https://www.encodeproject.org/experiments/ENCSR260AKX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR260AKX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR633YHP
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB029KUD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP746 (unc-119(tm4063); wgIs746 [tbp-1::TY1 EGFP 3xFLAG(GlyStock16H06_GlyStock16H06) + unc-119(+)]) mixed sex young adult (65 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans tbp-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBP-1.

value: pooled male and female

value: 65 hour

value: L1 larva starved after bleaching

value: ENCBS882IXS at ENCODE; https://www.encodeproject.org/ENCBS882IXS/


title: Control ChIP-seq from whole organism (ENCLB571TJE)

description:
https://www.encodeproject.org/experiments/ENCSR333QIL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR333QIL
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB571TJE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9817 embryo (10-24 hours) insertion targeting D. melanogaster CG43347

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9817

value: not collected

value: Kevin White, UChicago

value: Kevin White

value: ENCBS731XPT at ENCODE; https://www.encodeproject.org/ENCBS731XPT/


title: Control ChIP-seq from whole organism (ENCLB896TMS)

description:
https://www.encodeproject.org/experiments/ENCSR078ZXA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing REPO-1-eGFP fusion proteins.
experiment encode accession: ENCSR078ZXA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB896TMS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP688 (unc-119(tm4063) III; wgIs688) mixed sex young adult 53 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans repo-1

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REPO-1

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS631FHW at ENCODE; https://www.encodeproject.org/ENCBS631FHW/


title: TF ChIP-seq from whole organism (ENCLB264HNR)

description:
https://www.encodeproject.org/experiments/ENCSR260AKX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR260AKX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR633YHP
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB264HNR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBP-1.

value: pooled male and female

value: 65 hour

value: ENCBS601EKT at ENCODE; https://www.encodeproject.org/ENCBS601EKT/


title: Control ChIP-seq from whole organism (ENCLB956TVX)

description:
https://www.encodeproject.org/experiments/ENCSR171ADY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR171ADY
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB956TVX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8281 embryo (0-20 hours) insertion targeting D. melanogaster CG8281

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8281

value: not collected

value: embryonic

value: 0-20 hour

value: ENCBS511LZV at ENCODE; https://www.encodeproject.org/ENCBS511LZV/


title: Control ChIP-seq from whole organism (ENCLB844LMI)

description:
https://www.encodeproject.org/experiments/ENCSR086AUV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing TRA-4-eGFP fusion proteins.
experiment encode accession: ENCSR086AUV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB844LMI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP640 (unc-119(tm4063) III; wgIs640) mixed sex early embryo using egg bleaching insertion targeting C. elegans tra-4

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TRA-4

value: early embryonic

value: unknown

value: egg bleaching

value: ENCBS134HRW at ENCODE; https://www.encodeproject.org/ENCBS134HRW/


title: TF ChIP-seq from whole organism (ENCLB738SEB)

description:
https://www.encodeproject.org/experiments/ENCSR753PGF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIM-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR753PGF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR194OUP
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB738SEB
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIM-6

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS265WSN at ENCODE; https://www.encodeproject.org/ENCBS265WSN/


title: TF ChIP-seq from whole organism (ENCLB559XUR)

description:
https://www.encodeproject.org/experiments/ENCSR239MPW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing caup-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239MPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497DLP
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB559XUR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain caup-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster caup

value: caup

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to caup

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS675UQK at ENCODE; https://www.encodeproject.org/ENCBS675UQK/


title: Control ChIP-seq from whole organism (ENCLB472ZPS)

description:
https://www.encodeproject.org/experiments/ENCSR071LAB/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing sem-2-eGFP fusion proteins.
experiment encode accession: ENCSR071LAB
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB472ZPS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP701 (unc-119(tm4063); wgIs701 [sem-2::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (1 hour) using egg bleaching insertion targeting C. elegans sem-2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SEM-2.

value: mixed stage (embryonic)

value: 1 hour

value: egg bleaching

value: ENCBS326CSK at ENCODE; https://www.encodeproject.org/ENCBS326CSK/


title: Control ChIP-seq from whole organism (ENCLB352DYS)

description:
https://www.encodeproject.org/experiments/ENCSR054LVI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ss-RB-eGFP fusion proteins.
experiment encode accession: ENCSR054LVI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB352DYS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ss-GFP mixed sex prepupa (24 hours) insertion targeting D. melanogaster ss

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ss-RB

value: prepupa

value: 24 hour

value: ENCBS285HUD at ENCODE; https://www.encodeproject.org/ENCBS285HUD/


title: Control ChIP-seq from whole organism (ENCLB553QHS)

description:
https://www.encodeproject.org/experiments/ENCSR071LAB/
***************
biological replicate number: 3
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing sem-2-eGFP fusion proteins.
experiment encode accession: ENCSR071LAB
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB553QHS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS863LHQ at ENCODE; https://www.encodeproject.org/ENCBS863LHQ/


title: Control ChIP-seq from whole organism (ENCLB039HQN)

description:
https://www.encodeproject.org/experiments/ENCSR749OUM/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing TTX-3-eGFP fusion proteins.
experiment encode accession: ENCSR749OUM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB039HQN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP68 (unc-119(ed3) III; wgIs68) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans ttx-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TTX-3

value: hermaphrodite

value: late embryonic

value: unknown

value: hour

value: ENCBS316VJW at ENCODE; https://www.encodeproject.org/ENCBS316VJW/


title: TF ChIP-seq from whole organism (ENCLB450CNK)

description:
https://www.encodeproject.org/experiments/ENCSR632XME/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR632XME
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR178IVN
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB450CNK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain RW10702 hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans hlh-6

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-6

value: egg bleaching

value: ENCBS289OGH at ENCODE; https://www.encodeproject.org/ENCBS289OGH/


title: TF ChIP-seq from whole organism (ENCLB474WBC)

description:
https://www.encodeproject.org/experiments/ENCSR239MPW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing caup-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239MPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497DLP
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB474WBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: caup

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to caup

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS993HNA at ENCODE; https://www.encodeproject.org/ENCBS993HNA/


title: TF ChIP-seq from whole organism (ENCLB501PKG)

description:
https://www.encodeproject.org/experiments/ENCSR239MPW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing caup-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239MPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497DLP
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB501PKG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: ENCBS540GUV at ENCODE; https://www.encodeproject.org/ENCBS540GUV/


title: TF ChIP-seq from whole organism (ENCLB888JJI)

description:
https://www.encodeproject.org/experiments/ENCSR182HOA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing c02f12.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR182HOA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR481ITX
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB888JJI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP742 (wgIs742 [C02F12.10::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-63

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C02F12.10.

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS294QAD at ENCODE; https://www.encodeproject.org/ENCBS294QAD/


title: TF ChIP-seq from whole organism (ENCLB811QRA)

description:
https://www.encodeproject.org/experiments/ENCSR182HOA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing c02f12.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR182HOA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR481ITX
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB811QRA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS993TQP at ENCODE; https://www.encodeproject.org/ENCBS993TQP/


title: Control ChIP-seq from whole organism (ENCLB317NIC)

description:
https://www.encodeproject.org/experiments/ENCSR065TMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-79-eGFP fusion proteins.
experiment encode accession: ENCSR065TMZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB317NIC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP553 (unc-119(tm4063) III; wgIs553) mixed sex young adult 66 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-79

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-79

value: young adult

value: unknown

value: hour

value: ENCBS179PLD at ENCODE; https://www.encodeproject.org/ENCBS179PLD/


title: TF ChIP-seq from whole organism (ENCLB055XWA)

description:
https://www.encodeproject.org/experiments/ENCSR422XRE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing COG-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR422XRE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR713MAY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB055XWA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP541 (unc-119(tm4063) III; wgIs541) hermaphrodite midembryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans cog-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to COG-1

value: hermaphrodite

value: midembryonic

value: egg bleaching

value: ENCBS576KYX at ENCODE; https://www.encodeproject.org/ENCBS576KYX/


title: TF ChIP-seq from whole organism (ENCLB580RBN)

description:
https://www.encodeproject.org/experiments/ENCSR422XRE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing COG-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR422XRE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR713MAY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB580RBN
fragmentation methods: sonication (generic microtip)

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS506JRB at ENCODE; https://www.encodeproject.org/ENCBS506JRB/


title: Control ChIP-seq from whole organism (ENCLB428GIT)

description:
https://www.encodeproject.org/experiments/ENCSR331RGH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR331RGH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB428GIT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain abd-A mixed sex embryo (4-24 hours) insertion targeting D. melanogaster abd-A

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to abd-A

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS617SOY at ENCODE; https://www.encodeproject.org/ENCBS617SOY/


title: TF ChIP-seq from whole organism (ENCLB010SVF)

description:
https://www.encodeproject.org/experiments/ENCSR332BCD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pita-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR332BCD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR962PQM
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB010SVF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pita-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pita

value: pita

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pita

value: 0-24 hour

value: ENCBS651TAD at ENCODE; https://www.encodeproject.org/ENCBS651TAD/


title: TF ChIP-seq from whole organism (ENCLB806ISM)

description:
https://www.encodeproject.org/experiments/ENCSR422GZR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR422GZR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR095MXI
encode release date: 2023-01-05
lab: Valerie Reinke, Yale
library encode accession: ENCLB806ISM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain JK1107 (glp-1(q224) III) hermaphrodite young adult whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: hermaphrodite

value: young adult

value: unknown

value: ENCBS593ORQ at ENCODE; https://www.encodeproject.org/ENCBS593ORQ/


title: TF ChIP-seq from whole organism (ENCLB021SUI)

description:
https://www.encodeproject.org/experiments/ENCSR180ETP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C34B4.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR180ETP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR784CLT
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB021SUI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP552 (unc-119(tm4063) III; wgIs552) mixed sex L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans C34B4.2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C34B4.2

value: L1 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS445RUG at ENCODE; https://www.encodeproject.org/ENCBS445RUG/


title: TF ChIP-seq from whole organism (ENCLB915HQI)

description:
https://www.encodeproject.org/experiments/ENCSR422GZR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR422GZR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR095MXI
encode release date: 2023-01-05
lab: Valerie Reinke, Yale
library encode accession: ENCLB915HQI
fragmentation methods: sonication (Bioruptor generic)
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

value: whole organisms

value: not applicable

value: ENCBS363PRH at ENCODE; https://www.encodeproject.org/ENCBS363PRH/


title: TF ChIP-seq from whole organism (ENCLB618BDL)

description:
https://www.encodeproject.org/experiments/ENCSR180ETP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C34B4.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR180ETP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR784CLT
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB618BDL
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: ENCBS901FWC at ENCODE; https://www.encodeproject.org/ENCBS901FWC/


title: TF ChIP-seq from whole organism (ENCLB428JVQ)

description:
https://www.encodeproject.org/experiments/ENCSR332BCD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pita-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR332BCD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR962PQM
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB428JVQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pita

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pita

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS175UEY at ENCODE; https://www.encodeproject.org/ENCBS175UEY/


title: Control ChIP-seq from whole organism (ENCLB687YOM)

description:
https://www.encodeproject.org/experiments/ENCSR058THH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hlh-13-eGFP fusion proteins.
experiment encode accession: ENCSR058THH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB687YOM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP744 (wgIs744 [hlh-13::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex late embryo (3.5 hours) using egg bleaching insertion targeting C. elegans hlh-13

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-13.

value: late embryonic

value: 3.5 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS035CNV at ENCODE; https://www.encodeproject.org/ENCBS035CNV/


title: Control ChIP-seq from whole organism (ENCLB560VTW)

description:
https://www.encodeproject.org/experiments/ENCSR238IHN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG14962-eGFP fusion proteins.
experiment encode accession: ENCSR238IHN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB560VTW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14962-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Asciz

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14962

value: ENCBS816FLD at ENCODE; https://www.encodeproject.org/ENCBS816FLD/


title: Control ChIP-seq from whole organism (ENCLB291EIT)

description:
https://www.encodeproject.org/experiments/ENCSR238YEP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dmrt11E-eGFP fusion proteins.
experiment encode accession: ENCSR238YEP
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB291EIT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (2-10 hours) insertion targeting D. melanogaster dmrt11E

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dmrt11E

value: pooled male and female

value: ENCBS143ABD at ENCODE; https://www.encodeproject.org/ENCBS143ABD/


title: TF ChIP-seq from whole organism (ENCLB063JQK)

description:
https://www.encodeproject.org/experiments/ENCSR057TFD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing GMEB-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR057TFD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR794SVC
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB063JQK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP622 (unc-119(tm4063) III; wgIs622) mixed sex late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans gmeb-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to GMEB-2

value: unknown

value: Valerie Reinke

value: hour

value: ENCBS413KVJ at ENCODE; https://www.encodeproject.org/ENCBS413KVJ/


title: Control ChIP-seq from whole organism (ENCLB569NIS)

description:
https://www.encodeproject.org/experiments/ENCSR331EDA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing SREBP-eGFP fusion proteins.
experiment encode accession: ENCSR331EDA
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB569NIS
size range: 200-800

source_name: Drosophila melanogaster strain SREBP mixed sex wandering third instar larva insertion targeting D. melanogaster SREBP

value: whole organism

value: Transgenic D. mel line, stably expressing a N-terminal GFP fused to SREBP

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS432UBJ at ENCODE; https://www.encodeproject.org/ENCBS432UBJ/


title: TF ChIP-seq from whole organism (ENCLB047ETD)

description:
https://www.encodeproject.org/experiments/ENCSR632XME/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR632XME
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR178IVN
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB047ETD
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-6

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS623CTZ at ENCODE; https://www.encodeproject.org/ENCBS623CTZ/


title: TF ChIP-seq from whole organism (ENCLB231KBC)

description:
https://www.encodeproject.org/experiments/ENCSR623HHL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SNPC-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR623HHL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR055WPE
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB231KBC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL551 hermaphrodite young adult 60 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans snpc-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: young adult

value: unknown

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS421CBO at ENCODE; https://www.encodeproject.org/ENCBS421CBO/


title: Control ChIP-seq from whole organism (ENCLB913HNC)

description:
https://www.encodeproject.org/experiments/ENCSR620OAL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F37D6.2-eGFP fusion proteins.
experiment encode accession: ENCSR620OAL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB913HNC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP510 (unc-119(tm4063) III; wgIs510) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans row-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F37D6.2

value: L4 larva

value: hour

value: ENCBS481APY at ENCODE; https://www.encodeproject.org/ENCBS481APY/


title: TF ChIP-seq from whole organism (ENCLB676PQN)

description:
https://www.encodeproject.org/experiments/ENCSR623HHL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SNPC-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR623HHL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR055WPE
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB676PQN
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: ENCBS691DTO at ENCODE; https://www.encodeproject.org/ENCBS691DTO/


title: Control ChIP-seq from whole organism (ENCLB832EHN)

description:
https://www.encodeproject.org/experiments/ENCSR335QVI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing EFL-3-eGFP fusion proteins.
experiment encode accession: ENCSR335QVI
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB832EHN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP344 (unc-119(tm4063); wgIs344 [F49E12.6::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans efl-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-3.

value: pooled male and female

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: ENCBS620NLU at ENCODE; https://www.encodeproject.org/ENCBS620NLU/


title: TF ChIP-seq from whole organism (ENCLB668HRW)

description:
https://www.encodeproject.org/experiments/ENCSR237PJC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237PJC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR286HLA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB668HRW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15601 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG15601

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15601

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS757CYD at ENCODE; https://www.encodeproject.org/ENCBS757CYD/


title: Control ChIP-seq from whole organism (ENCLB005TPJ)

description:
https://www.encodeproject.org/experiments/ENCSR239LBE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1233-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239LBE
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB005TPJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1233-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG1233

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1233

value: 0-24 hour

value: ENCBS054FJP at ENCODE; https://www.encodeproject.org/ENCBS054FJP/


title: Control ChIP-seq from whole organism (ENCLB765LKX)

description:
https://www.encodeproject.org/experiments/ENCSR173JYR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZTF-26-eGFP fusion proteins.
experiment encode accession: ENCSR173JYR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB765LKX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP565 (unc-119(tm4063) III; wgIs565) mixed sex young adult 56 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-26

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-26

value: young adult

value: unknown

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS685VQC at ENCODE; https://www.encodeproject.org/ENCBS685VQC/


title: TF ChIP-seq from whole organism (ENCLB358VXW)

description:
https://www.encodeproject.org/experiments/ENCSR237PJC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237PJC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR286HLA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB358VXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15601

value: pooled male and female

value: embryonic

value: 0-14 hour

value: ENCBS273UGY at ENCODE; https://www.encodeproject.org/ENCBS273UGY/


title: Control ChIP-seq from whole organism (ENCLB742RXH)

description:
https://www.encodeproject.org/experiments/ENCSR170TEC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing tbx-8-eGFP fusion proteins.
experiment encode accession: ENCSR170TEC
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB742RXH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW10470 (st10470 [tbx-8::TY1::EGFP::3xFLAG; unc-119(+)]; unc-119(ed3)) mixed sex mixed stage (embryo) (2.5 hours) using egg bleaching insertion targeting C. elegans tbx-8

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-8.

value: mixed stage (embryonic)

value: 2.5 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS334MZD at ENCODE; https://www.encodeproject.org/ENCBS334MZD/


title: Control ChIP-seq from whole organism (ENCLB793QYP)

description:
https://www.encodeproject.org/experiments/ENCSR420LNH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ETS-7-eGFP fusion proteins.
experiment encode accession: ENCSR420LNH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB793QYP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP487 hermaphrodite early embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans ets-7

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ETS-7

value: hermaphrodite

value: early embryonic

value: unknown

value: ENCBS777WDB at ENCODE; https://www.encodeproject.org/ENCBS777WDB/


title: TF ChIP-seq from whole organism (ENCLB221QJB)

description:
https://www.encodeproject.org/experiments/ENCSR237PJC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237PJC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR286HLA
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB221QJB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15601

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS702DIN at ENCODE; https://www.encodeproject.org/ENCBS702DIN/


title: Control ChIP-seq from whole organism (ENCLB559ANF)

description:
https://www.encodeproject.org/experiments/ENCSR745OUC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-12-eGFP fusion proteins.
experiment encode accession: ENCSR745OUC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB559ANF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP538 (unc-119(tm4063) III; wgIs538) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hlh-12

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-12

value: young adult

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS121QLL at ENCODE; https://www.encodeproject.org/ENCBS121QLL/


title: TF ChIP-seq from whole organism (ENCLB857QIQ)

description:
https://www.encodeproject.org/experiments/ENCSR327ZQL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG18599-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR327ZQL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722JKV
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB857QIQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG18599-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG18599

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18599

value: 0-24 hour

value: ENCBS226YQK at ENCODE; https://www.encodeproject.org/ENCBS226YQK/


title: Control ChIP-seq from whole organism (ENCLB277AUS)

description:
https://www.encodeproject.org/experiments/ENCSR334ADQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-13-eGFP fusion proteins.
experiment encode accession: ENCSR334ADQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB277AUS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP756 (unc-119(tm4063); wgIs756 [ceh-13::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (2 hours) using egg bleaching insertion targeting C. elegans ceh-13

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-13.

value: pooled male and female

value: early embryonic

value: 2 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS223ROE at ENCODE; https://www.encodeproject.org/ENCBS223ROE/


title: Control ChIP-seq from whole organism (ENCLB838OTG)

description:
https://www.encodeproject.org/experiments/ENCSR169AMM/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing M03D4.4-eGFP fusion proteins.
experiment encode accession: ENCSR169AMM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB838OTG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP696 (unc-119(tm4063) III; wgIs696) mixed sex mixed stage (embryo) 2 hours post synchronization using egg bleaching insertion targeting C. elegans M03D4.4

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to M03D4.4

value: mixed stage (embryonic)

value: unknown

value: ENCBS853PYS at ENCODE; https://www.encodeproject.org/ENCBS853PYS/


title: TF ChIP-seq from whole organism (ENCLB059OFQ)

description:
https://www.encodeproject.org/experiments/ENCSR735XWN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-102-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR735XWN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR324PNK
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB059OFQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP463 (unc-119(tm4063) III; wgIs463) hermaphrodite L4 larva 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-102

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-102

value: hermaphrodite

value: L4 larva

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS341RVA at ENCODE; https://www.encodeproject.org/ENCBS341RVA/


title: Control ChIP-seq from whole organism (ENCLB027HDF)

description:
https://www.encodeproject.org/experiments/ENCSR332VYA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing PHA-2-eGFP fusion proteins.
experiment encode accession: ENCSR332VYA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB027HDF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP687 (unc-119(tm4063) III; wgIs687) mixed sex late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans pha-2

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PHA-2

value: pooled male and female

value: late embryonic

value: ENCBS108KWM at ENCODE; https://www.encodeproject.org/ENCBS108KWM/


title: Control ChIP-seq from whole organism (ENCLB559GZA)

description:
https://www.encodeproject.org/experiments/ENCSR917QWA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing duxl-1-eGFP fusion proteins.
experiment encode accession: ENCSR917QWA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB559GZA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP470 (unc-119(tm4063) III; wgIs470) hermaphrodite L4 larva insertion targeting C. elegans duxl-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to duxl-1

value: Valerie Reinke, Yale

value: ENCBS814QLB at ENCODE; https://www.encodeproject.org/ENCBS814QLB/


title: TF ChIP-seq from whole organism (ENCLB784YLI)

description:
https://www.encodeproject.org/experiments/ENCSR327ZQL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG18599-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR327ZQL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722JKV
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB784YLI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18599

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS631ITA at ENCODE; https://www.encodeproject.org/ENCBS631ITA/


title: TF ChIP-seq from whole organism (ENCLB370TCM)

description:
https://www.encodeproject.org/experiments/ENCSR327ZQL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG18599-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR327ZQL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722JKV
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB370TCM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS078PUP at ENCODE; https://www.encodeproject.org/ENCBS078PUP/


title: TF ChIP-seq from whole organism (ENCLB464YLT)

description:
https://www.encodeproject.org/experiments/ENCSR420ATF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-31-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR420ATF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR908SMR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB464YLT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP370 (unc-119(tm4063) III; wgIs370) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-31

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-31

value: hermaphrodite

value: unknown

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS852CRX at ENCODE; https://www.encodeproject.org/ENCBS852CRX/


title: TF ChIP-seq from whole organism (ENCLB871DKO)

description:
https://www.encodeproject.org/experiments/ENCSR917KLO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C04F5.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR917KLO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR748EUE
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB871DKO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP525 (unc-119(tm4063) III; wgIs525) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans C04F5.9

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C04F5.9

value: L1 larva

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS012DXS at ENCODE; https://www.encodeproject.org/ENCBS012DXS/


title: TF ChIP-seq from whole organism (ENCLB647KSA)

description:
https://www.encodeproject.org/experiments/ENCSR049FHU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tlf-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR049FHU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR517WHP
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB647KSA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP749 (wgIs749 [tlf-1::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex young adult (65.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans tlf-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TLF-1.

value: pooled male and female

value: young adult

value: 65.5 hour

value: ENCBS967LSP at ENCODE; https://www.encodeproject.org/ENCBS967LSP/


title: TF ChIP-seq from whole organism (ENCLB264GKT)

description:
https://www.encodeproject.org/experiments/ENCSR237AMN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14655-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237AMN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR248DUF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB264GKT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14655-GFP mixed sex pupa (48 days) insertion targeting D. melanogaster CG14655

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14655

value: pupa

value: 48 day

value: Kevin White, UChicago

value: Kevin White

value: ENCBS091STC at ENCODE; https://www.encodeproject.org/ENCBS091STC/


title: TF ChIP-seq from whole organism (ENCLB904AEO)

description:
https://www.encodeproject.org/experiments/ENCSR420ATF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-31-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR420ATF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR908SMR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB904AEO
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-31

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS100OZQ at ENCODE; https://www.encodeproject.org/ENCBS100OZQ/


title: TF ChIP-seq from whole organism (ENCLB743KRL)

description:
https://www.encodeproject.org/experiments/ENCSR239IAH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239IAH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR504SMY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB743KRL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP651 (unc-119(tm4063); wgIs651 [bed-3::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (4 hours) using egg bleaching insertion targeting C. elegans bed-3

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to BED-3.

value: pooled male and female

value: mixed stage (embryonic)

value: 4 hour

value: Valerie Reinke, Yale

value: ENCBS740YVO at ENCODE; https://www.encodeproject.org/ENCBS740YVO/


title: TF ChIP-seq from whole organism (ENCLB711OYY)

description:
https://www.encodeproject.org/experiments/ENCSR237AMN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14655-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237AMN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR248DUF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB711OYY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14655

value: pupa

value: 48 day

value: Kevin White, UChicago

value: Kevin White

value: ENCBS439LHQ at ENCODE; https://www.encodeproject.org/ENCBS439LHQ/


title: TF ChIP-seq from whole organism (ENCLB969AOF)

description:
https://www.encodeproject.org/experiments/ENCSR237AMN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14655-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR237AMN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR248DUF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB969AOF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS748RLQ at ENCODE; https://www.encodeproject.org/ENCBS748RLQ/


title: TF ChIP-seq from whole organism (ENCLB952CVU)

description:
https://www.encodeproject.org/experiments/ENCSR049FHU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tlf-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR049FHU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR517WHP
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB952CVU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TLF-1.

value: young adult

value: 65.5 hour

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS367YVL at ENCODE; https://www.encodeproject.org/ENCBS367YVL/


title: TF ChIP-seq from whole organism (ENCLB848SUG)

description:
https://www.encodeproject.org/experiments/ENCSR239IAH/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239IAH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR504SMY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB848SUG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to BED-3.

value: pooled male and female

value: mixed stage (embryonic)

value: 4 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS741QFF at ENCODE; https://www.encodeproject.org/ENCBS741QFF/


title: Control ChIP-seq from whole organism (ENCLB533RXP)

description:
https://www.encodeproject.org/experiments/ENCSR236JJO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9727-eGFP fusion proteins.
experiment encode accession: ENCSR236JJO
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB533RXP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9727-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9727

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9727

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS981XOU at ENCODE; https://www.encodeproject.org/ENCBS981XOU/


title: TF ChIP-seq from whole organism (ENCLB826FDD)

description:
https://www.encodeproject.org/experiments/ENCSR607BSL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HIM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR607BSL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR107LHB
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB826FDD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL576 hermaphrodite L4/young adult 51 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans him-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIM-1

value: hermaphrodite

value: L4/young adult

value: unknown

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS755SNO at ENCODE; https://www.encodeproject.org/ENCBS755SNO/


title: TF ChIP-seq from whole organism (ENCLB703YQT)

description:
https://www.encodeproject.org/experiments/ENCSR239IAH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239IAH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR504SMY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB703YQT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to BED-3.

value: pooled male and female

value: mixed stage (embryonic)

value: 4 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS597ODY at ENCODE; https://www.encodeproject.org/ENCBS597ODY/


title: TF ChIP-seq from whole organism (ENCLB465HCD)

description:
https://www.encodeproject.org/experiments/ENCSR735XWN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-102-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR735XWN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR324PNK
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB465HCD
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-102

value: L4 larva

value: ENCBS993MWE at ENCODE; https://www.encodeproject.org/ENCBS993MWE/


title: TF ChIP-seq from whole organism (ENCLB079GRS)

description:
https://www.encodeproject.org/experiments/ENCSR164CYL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PHA-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR164CYL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR332VYA
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB079GRS
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PHA-2

value: late embryonic

value: unknown

value: Valerie Reinke

value: ENCBS125FMB at ENCODE; https://www.encodeproject.org/ENCBS125FMB/


title: TF ChIP-seq from whole organism (ENCLB522MLL)

description:
https://www.encodeproject.org/experiments/ENCSR607BSL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HIM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR607BSL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR107LHB
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB522MLL
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIM-1

value: hermaphrodite

value: L4/young adult

value: L1 larva starved after bleaching

value: hour

value: ENCBS328UVK at ENCODE; https://www.encodeproject.org/ENCBS328UVK/


title: TF ChIP-seq from whole organism (ENCLB969JHT)

description:
https://www.encodeproject.org/experiments/ENCSR165KWP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17802-eGFP fusion proteins.
experiment encode accession: ENCSR165KWP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR598ZNC
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB969JHT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17802 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG17802

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17802

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS441YMF at ENCODE; https://www.encodeproject.org/ENCBS441YMF/


title: TF ChIP-seq from whole organism (ENCLB914WOT)

description:
https://www.encodeproject.org/experiments/ENCSR165KWP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17802-eGFP fusion proteins.
experiment encode accession: ENCSR165KWP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR598ZNC
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB914WOT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS838CYV at ENCODE; https://www.encodeproject.org/ENCBS838CYV/


title: TF ChIP-seq from whole organism (ENCLB997NVZ)

description:
https://www.encodeproject.org/experiments/ENCSR905YIL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F37D6.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR905YIL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR620OAL
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB997NVZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP510 (unc-119(tm4063) III; wgIs510) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans row-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F37D6.2

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS230PLJ at ENCODE; https://www.encodeproject.org/ENCBS230PLJ/


title: TF ChIP-seq from whole organism (ENCLB448VMP)

description:
https://www.encodeproject.org/experiments/ENCSR164CYL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PHA-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR164CYL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR332VYA
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB448VMP
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PHA-2

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS944NTE at ENCODE; https://www.encodeproject.org/ENCBS944NTE/


title: TF ChIP-seq from whole organism (ENCLB178ZUF)

description:
https://www.encodeproject.org/experiments/ENCSR164WWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fd64A-eGFP fusion proteins.
experiment encode accession: ENCSR164WWJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR638MNR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB178ZUF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd64A-GFP mixed sex embryo (8-14 hours) insertion targeting D. melanogaster FoxL1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd64A

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS160JXV at ENCODE; https://www.encodeproject.org/ENCBS160JXV/


title: Control ChIP-seq from whole organism (ENCLB746CSQ)

description:
https://www.encodeproject.org/experiments/ENCSR234NAI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing B0310.2-eGFP fusion proteins.
experiment encode accession: ENCSR234NAI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB746CSQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP642 (unc-119 (tm4063) III; wgIs642) mixed sex early embryo 0 hours post synchronization using egg bleaching insertion targeting C. elegans B0310.2

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to B0310.2

value: early embryonic

value: ENCBS702ZKF at ENCODE; https://www.encodeproject.org/ENCBS702ZKF/


title: TF ChIP-seq from whole organism (ENCLB801QDM)

description:
https://www.encodeproject.org/experiments/ENCSR905YIL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F37D6.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR905YIL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR620OAL
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB801QDM
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F37D6.2

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS657HRP at ENCODE; https://www.encodeproject.org/ENCBS657HRP/


title: Control ChIP-seq from whole organism (ENCLB263GXJ)

description:
https://www.encodeproject.org/experiments/ENCSR231AGR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HMG-4-eGFP fusion proteins.
experiment encode accession: ENCSR231AGR
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB263GXJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (0 hours) using egg bleaching insertion targeting C. elegans hmg-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMG-4.

value: pooled male and female

value: 0 hour

value: egg bleaching

value: ENCBS965XCR at ENCODE; https://www.encodeproject.org/ENCBS965XCR/


title: TF ChIP-seq from whole organism (ENCLB096ONH)

description:
https://www.encodeproject.org/experiments/ENCSR406IHG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SWSN-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR406IHG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR709XYX
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB096ONH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP512 (unc-119(tm4063) III; wgIs512) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans swsn-7

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SWSN-7

value: L1 larva

value: hour

value: ENCBS875VGW at ENCODE; https://www.encodeproject.org/ENCBS875VGW/


title: TF ChIP-seq from whole organism (ENCLB810NUS)

description:
https://www.encodeproject.org/experiments/ENCSR323LIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F52B5.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR323LIQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR329VYL
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB810NUS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F52B5.7

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F52B5.7

value: young adult

value: ENCBS291STD at ENCODE; https://www.encodeproject.org/ENCBS291STD/


title: Control ChIP-seq from whole organism (ENCLB292FNP)

description:
https://www.encodeproject.org/experiments/ENCSR713MAY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing COG-1-eGFP fusion proteins.
experiment encode accession: ENCSR713MAY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB292FNP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP541 (unc-119(tm4063) III; wgIs541) hermaphrodite midembryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans cog-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to COG-1

value: hermaphrodite

value: midembryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS342FBW at ENCODE; https://www.encodeproject.org/ENCBS342FBW/


title: Control ChIP-seq from whole organism (ENCLB675QPH)

description:
https://www.encodeproject.org/experiments/ENCSR163RIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CTCF-eGFP fusion proteins.
experiment encode accession: ENCSR163RIQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB675QPH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CTCF-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CTCF

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CTCF

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS808PFB at ENCODE; https://www.encodeproject.org/ENCBS808PFB/


title: TF ChIP-seq from whole organism (ENCLB397UPN)

description:
https://www.encodeproject.org/experiments/ENCSR041LFH/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing gei-17-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR041LFH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR424EIZ
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB397UPN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP572 (unc-119(tm4063); wgIs572 [gei-17::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex young adult (64 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans gei-17

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to GEI-17.

value: young adult

value: 64 hour

value: L1 larva starved after bleaching

value: ENCBS592BZV at ENCODE; https://www.encodeproject.org/ENCBS592BZV/


title: TF ChIP-seq from whole organism (ENCLB779NFT)

description:
https://www.encodeproject.org/experiments/ENCSR406IHG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SWSN-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR406IHG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR709XYX
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB779NFT
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SWSN-7

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS646XMT at ENCODE; https://www.encodeproject.org/ENCBS646XMT/


title: TF ChIP-seq from whole organism (ENCLB010WHF)

description:
https://www.encodeproject.org/experiments/ENCSR041LFH/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing gei-17-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR041LFH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR424EIZ
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB010WHF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: pooled male and female

value: ENCBS202EGA at ENCODE; https://www.encodeproject.org/ENCBS202EGA/


title: Control ChIP-seq from whole organism (ENCLB676BYC)

description:
https://www.encodeproject.org/experiments/ENCSR329VYL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F52B5.7-eGFP fusion proteins.
experiment encode accession: ENCSR329VYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB676BYC
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F52B5.7

value: ENCBS419NBW at ENCODE; https://www.encodeproject.org/ENCBS419NBW/


title: TF ChIP-seq from whole organism (ENCLB226IXW)

description:
https://www.encodeproject.org/experiments/ENCSR604KUU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing Y53C12C.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR604KUU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR939PJG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB226IXW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans eyg-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y53C12C.1

value: late embryonic

value: egg bleaching

value: ENCBS742TRJ at ENCODE; https://www.encodeproject.org/ENCBS742TRJ/


title: Control ChIP-seq from whole organism (ENCLB376RXP)

description:
https://www.encodeproject.org/experiments/ENCSR908SMR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-31-eGFP fusion proteins.
experiment encode accession: ENCSR908SMR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB376RXP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP370 (unc-119(tm4063) III; wgIs370) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-31

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-31

value: hermaphrodite

value: ENCBS465GYM at ENCODE; https://www.encodeproject.org/ENCBS465GYM/


title: Control ChIP-seq from whole organism (ENCLB131ZFD)

description:
https://www.encodeproject.org/experiments/ENCSR235ERJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8290-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR235ERJ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB131ZFD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8290 mixed sex embryo (0-14 hours) insertion targeting D. melanogaster ADD1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8290

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS964NNY at ENCODE; https://www.encodeproject.org/ENCBS964NNY/