title: TF ChIP-seq from whole organism (ENCLB122HAH)

description:
https://www.encodeproject.org/experiments/ENCSR472HTK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in L1 larva worms.
experiment encode accession: ENCSR472HTK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR269LRI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB122HAH
size range: 150-350

source_name: Caenorhabditis elegans strain YL409 (unc-119(ed3)III; vrIs60 [pLIN-35::LIN-35:GFP:FLAG::LIN-35 3'UTR, unc-119 (+)])) mixed sex L1 larva insertion targeting C. elegans lin-35

value: Michael Snyder, Stanford

value: CGC

value: ENCBS034VZH at ENCODE; https://www.encodeproject.org/ENCBS034VZH/


title: Control ChIP-seq from whole organism (ENCLB517TPM)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR799ODD/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR799ODD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB517TPM
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L2 larva insertion targeting C. elegans elt-3

extract_protocol: not provided

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

tag: Sex

value: pooled male and female

tag: dev stage

value: L2 larva

tag: age

value: unknown

tag: lab

tag: source

value: Michael Snyder

tag: link

value: ENCBS334FDO at ENCODE; https://www.encodeproject.org/ENCBS334FDO/


title: TF ChIP-seq from whole organism (ENCLB389TXP)

description:
https://www.encodeproject.org/experiments/ENCSR799OPN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L1 larva worms.
experiment encode accession: ENCSR799OPN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR829JUS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB389TXP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L1 larva insertion targeting C. elegans lin-15B

tag: antibody

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-15B

value: L1 larva

value: ENCBS356LQY at ENCODE; https://www.encodeproject.org/ENCBS356LQY/


title: Control ChIP-seq from whole organism (ENCLB081DNB)

description:
https://www.encodeproject.org/experiments/ENCSR799ODD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR799ODD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB081DNB
fragmentation methods: sonication (generic microtip)

value: ENCBS233CPQ at ENCODE; https://www.encodeproject.org/ENCBS233CPQ/


title: TF ChIP-seq from whole organism (ENCLB964TRS)

description:
https://www.encodeproject.org/experiments/ENCSR799OPN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L1 larva worms.
experiment encode accession: ENCSR799OPN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR829JUS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB964TRS
size range: 150-350

value: ENCBS615QQN at ENCODE; https://www.encodeproject.org/ENCBS615QQN/


title: TF ChIP-seq from whole organism (ENCLB886QSN)

description:
https://www.encodeproject.org/experiments/ENCSR799OPN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L1 larva worms.
experiment encode accession: ENCSR799OPN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR829JUS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB886QSN
size range: 150-350

value: Michael Snyder, Stanford

value: ENCBS334GTH at ENCODE; https://www.encodeproject.org/ENCBS334GTH/


title: TF ChIP-seq from whole organism (ENCLB182WBA)

description:
https://www.encodeproject.org/experiments/ENCSR469ANW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in L1 larva worms.
experiment encode accession: ENCSR469ANW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563NMV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB182WBA
size range: 150-350

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex L1 larva insertion targeting C. elegans lsy-2

value: CGC

value: ENCBS179IGV at ENCODE; https://www.encodeproject.org/ENCBS179IGV/


title: TF ChIP-seq from whole organism (ENCLB574KTO)

description:
https://www.encodeproject.org/experiments/ENCSR969SOL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-4 in L2 larva worms.
experiment encode accession: ENCSR969SOL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR960DUC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB574KTO
size range: 150-350

source_name: Caenorhabditis elegans strain OP322 (unc-119(ed3) III; wgIs322) mixed sex L2 larva insertion targeting C. elegans ztf-4

value: whole organism

value: whole organisms

value: ENCBS241AWP at ENCODE; https://www.encodeproject.org/ENCBS241AWP/


title: TF ChIP-seq from whole organism (ENCLB297QDU)

description:
https://www.encodeproject.org/experiments/ENCSR798QYD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against SNPC-4 in YA worms.
experiment encode accession: ENCSR798QYD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR199VEK
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB297QDU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex young adult insertion targeting C. elegans snpc-4

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: pooled male and female

value: young adult

value: ENCBS921ZAU at ENCODE; https://www.encodeproject.org/ENCBS921ZAU/


title: TF ChIP-seq from whole organism (ENCLB847RUO)

description:
https://www.encodeproject.org/experiments/ENCSR969SOL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-4 in L2 larva worms.
experiment encode accession: ENCSR969SOL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR960DUC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB847RUO
size range: 150-350

value: L2 larva

value: unknown

value: ENCBS758JJZ at ENCODE; https://www.encodeproject.org/ENCBS758JJZ/


title: Control ChIP-seq from whole organism (ENCLB016SJD)

description:
https://www.encodeproject.org/experiments/ENCSR463EQY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR463EQY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB016SJD
size range: 150-350

source_name: Caenorhabditis elegans strain YL402 (unc119(ed3)III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans lin-35

value: ENCBS052COC at ENCODE; https://www.encodeproject.org/ENCBS052COC/


title: TF ChIP-seq from whole organism (ENCLB388NVV)

description:
https://www.encodeproject.org/experiments/ENCSR469ANW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in L1 larva worms.
experiment encode accession: ENCSR469ANW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563NMV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB388NVV
size range: 150-350

value: L1 larva

value: ENCBS773RPI at ENCODE; https://www.encodeproject.org/ENCBS773RPI/


title: TF ChIP-seq from whole organism (ENCLB000MSX)

description:
https://www.encodeproject.org/experiments/ENCSR463QMX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-11 in L3 larva worms.
experiment encode accession: ENCSR463QMX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR031AIO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB000MSX
size range: 150-350

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex L3 larva insertion targeting C. elegans ztf-11

value: L3 larva

value: Michael Snyder, Stanford

value: ENCBS333WXT at ENCODE; https://www.encodeproject.org/ENCBS333WXT/


title: Control ChIP-seq from whole organism (ENCLB432JWD)

description:
https://www.encodeproject.org/experiments/ENCSR459YGR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR459YGR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB432JWD
size range: 150-350

source_name: Caenorhabditis elegans strain OP432 (unc-119(tm4063) III; wgIs432) mixed sex L4 larva insertion targeting C. elegans zip-2

value: whole organism

value: L4 larva

value: CGC

value: ENCBS361RJA at ENCODE; https://www.encodeproject.org/ENCBS361RJA/


title: Control ChIP-seq from whole organism (ENCLB054QUM)

description:
https://www.encodeproject.org/experiments/ENCSR459YGR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR459YGR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB054QUM
size range: 150-350

value: whole organisms

value: not applicable

value: ENCBS627DHN at ENCODE; https://www.encodeproject.org/ENCBS627DHN/


title: TF ChIP-seq from whole organism (ENCLB356GXD)

description:
https://www.encodeproject.org/experiments/ENCSR472HTK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in L1 larva worms.
experiment encode accession: ENCSR472HTK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR269LRI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB356GXD
size range: 150-350

value: pooled male and female

value: ENCBS592MQQ at ENCODE; https://www.encodeproject.org/ENCBS592MQQ/


title: Control ChIP-seq from whole organism (ENCLB955NFV)

description:
https://www.encodeproject.org/experiments/ENCSR463EQY/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR463EQY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB955NFV
size range: 150-350

value: young adult

value: unknown

value: ENCBS152ZYV at ENCODE; https://www.encodeproject.org/ENCBS152ZYV/


title: Control ChIP-seq from whole organism (ENCLB046NDE)

description:
https://www.encodeproject.org/experiments/ENCSR966NHU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR966NHU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB046NDE
size range: 150-350

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L4 larva insertion targeting C. elegans lin-15B

value: ENCBS626QLJ at ENCODE; https://www.encodeproject.org/ENCBS626QLJ/


title: Control ChIP-seq from whole organism (ENCLB726QYL)

description:
https://www.encodeproject.org/experiments/ENCSR796BPI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR796BPI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB726QYL
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L3 larva insertion targeting C. elegans unc-62

value: ENCBS981SAD at ENCODE; https://www.encodeproject.org/ENCBS981SAD/


title: Control ChIP-seq from whole organism (ENCLB081FAT)

description:
https://www.encodeproject.org/experiments/ENCSR966NHU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR966NHU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB081FAT
size range: 150-350

value: ENCBS026KKQ at ENCODE; https://www.encodeproject.org/ENCBS026KKQ/


title: Control ChIP-seq from whole organism (ENCLB821ASI)

description:
https://www.encodeproject.org/experiments/ENCSR796BPI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR796BPI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB821ASI
size range: 150-350

value: L3 larva

value: Michael Snyder, Stanford

value: ENCBS015TAT at ENCODE; https://www.encodeproject.org/ENCBS015TAT/


title: Control ChIP-seq from whole organism (ENCLB041IDL)

description:
https://www.encodeproject.org/experiments/ENCSR458NUL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NFYA-1-eGFP fusion proteins.
experiment encode accession: ENCSR458NUL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB041IDL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP404 (unc-119(tm4063) III; wgIs404) hermaphrodite L3 larva insertion targeting C. elegans nfya-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS083JNQ at ENCODE; https://www.encodeproject.org/ENCBS083JNQ/


title: TF ChIP-seq from whole organism (ENCLB380UHI)

description:
https://www.encodeproject.org/experiments/ENCSR456YDF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEY-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456YDF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR219ATU
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB380UHI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva insertion targeting C. elegans cey-2

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEY-2

value: L4 larva

value: ENCBS010HMI at ENCODE; https://www.encodeproject.org/ENCBS010HMI/


title: TF ChIP-seq from whole organism (ENCLB462OET)

description:
https://www.encodeproject.org/experiments/ENCSR456YDF/
***************
biological replicate number: 2
technical replicate number: 2
description: ChIP-seq of transgenic worms expressing CEY-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456YDF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR219ATU
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB462OET
fragmentation methods: sonication (generic microtip)

value: unknown


title: TF ChIP-seq from whole organism (ENCLB405ERS)

description:
https://www.encodeproject.org/experiments/ENCSR456YDF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEY-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456YDF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR219ATU
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB405ERS
fragmentation methods: sonication (generic microtip)

value: ENCBS813HCI at ENCODE; https://www.encodeproject.org/ENCBS813HCI/


title: Control ChIP-seq from whole organism (ENCLB629ZWX)

description:
https://www.encodeproject.org/experiments/ENCSR793GEI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR793GEI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB629ZWX
size range: 150-350

source_name: Caenorhabditis elegans strain OP49 (unc119(ed3);wgIs49(lin-13::TY1 EGFP FLAG;unc119)) mixed sex L1 larva insertion targeting C. elegans lin-13

value: pooled male and female

value: L1 larva

value: CGC

value: ENCBS633LBL at ENCODE; https://www.encodeproject.org/ENCBS633LBL/


title: TF ChIP-seq from whole organism (ENCLB117PPM)

description:
https://www.encodeproject.org/experiments/ENCSR971HHI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-11 in L2 larva worms.
experiment encode accession: ENCSR971HHI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR372VPK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB117PPM
size range: 150-350

source_name: Caenorhabditis elegans strain OP62 (unc-119(ed3) III; wgIs62) mixed sex L2 larva insertion targeting C. elegans lin-11

value: whole organism

value: L2 larva

value: Michael Snyder, Stanford

value: ENCBS160UNT at ENCODE; https://www.encodeproject.org/ENCBS160UNT/


title: Control ChIP-seq from whole organism (ENCLB067PEW)

description:
https://www.encodeproject.org/experiments/ENCSR793GEI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR793GEI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB067PEW
size range: 150-350

value: ENCBS085TVY at ENCODE; https://www.encodeproject.org/ENCBS085TVY/


title: TF ChIP-seq from whole organism (ENCLB589ZJT)

description:
https://www.encodeproject.org/experiments/ENCSR463QMX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-11 in L3 larva worms.
experiment encode accession: ENCSR463QMX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR031AIO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB589ZJT
size range: 150-350

value: L3 larva

value: ENCBS035UVA at ENCODE; https://www.encodeproject.org/ENCBS035UVA/


title: TF ChIP-seq from whole organism (ENCLB974NVF)

description:
https://www.encodeproject.org/experiments/ENCSR456YDF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEY-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456YDF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR219ATU
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB974NVF
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS726HQD at ENCODE; https://www.encodeproject.org/ENCBS726HQD/


title: TF ChIP-seq from whole organism (ENCLB889WYH)

description:
https://www.encodeproject.org/experiments/ENCSR792SUU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in starved L1 larva worms.
experiment encode accession: ENCSR792SUU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR923VWK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB889WYH
size range: 150-350

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex L1 larva at L1 larva starved after bleaching stage insertion targeting C. elegans lsy-2

value: pooled male and female

value: unknown

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS821MVC at ENCODE; https://www.encodeproject.org/ENCBS821MVC/


title: TF ChIP-seq from whole organism (ENCLB737ZFY)

description:
https://www.encodeproject.org/experiments/ENCSR792SUU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in starved L1 larva worms.
experiment encode accession: ENCSR792SUU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR923VWK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB737ZFY
size range: 150-350

value: whole organism

value: L1 larva

value: CGC

value: ENCBS391XJT at ENCODE; https://www.encodeproject.org/ENCBS391XJT/


title: TF ChIP-seq from whole organism (ENCLB798QTV)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB798QTV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L3 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS687BWB at ENCODE; https://www.encodeproject.org/ENCBS687BWB/


title: TF ChIP-seq from whole organism (ENCLB484PXE)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 2
technical replicate number: 2
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB484PXE
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: L3 larva


title: TF ChIP-seq from whole organism (ENCLB482EBO)

description:
https://www.encodeproject.org/experiments/ENCSR660LLT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against MBF-1 in L2 larva worms.
experiment encode accession: ENCSR660LLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR541IIQ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB482EBO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP427 (unc-119(ed3) III; wgIs427) mixed sex L2 larva insertion targeting C. elegans mbf-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MBF-1

value: L2 larva

value: ENCBS045SYU at ENCODE; https://www.encodeproject.org/ENCBS045SYU/


title: Control ChIP-seq from whole organism (ENCLB582FZO)

description:
https://www.encodeproject.org/experiments/ENCSR966NHU/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR966NHU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB582FZO
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-15B

value: pooled male and female

value: L4 larva

value: unknown

value: ENCBS105DPF at ENCODE; https://www.encodeproject.org/ENCBS105DPF/


title: Control ChIP-seq from whole organism (ENCLB446NFN)

description:
https://www.encodeproject.org/experiments/ENCSR454PLL/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR454PLL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB446NFN
size range: 150-350

source_name: Caenorhabditis elegans strain OP324 (unc-119(ed3) III; wgIs324) mixed sex L2 larva insertion targeting C. elegans C34F6.9

value: whole organism

value: CGC

value: ENCBS671CHE at ENCODE; https://www.encodeproject.org/ENCBS671CHE/


title: TF ChIP-seq from whole organism (ENCLB741YIQ)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB741YIQ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: Michael Snyder, Stanford

value: ENCBS976QJR at ENCODE; https://www.encodeproject.org/ENCBS976QJR/


title: Control ChIP-seq from whole organism (ENCLB989YIT)

description:
https://www.encodeproject.org/experiments/ENCSR454PLL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR454PLL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB989YIT
size range: 150-350

value: whole organisms

value: ENCBS140QWY at ENCODE; https://www.encodeproject.org/ENCBS140QWY/


title: TF ChIP-seq from whole organism (ENCLB434CVV)

description:
https://www.encodeproject.org/experiments/ENCSR962LVB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-daf-12 in L3 larva worms.
experiment encode accession: ENCSR962LVB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR941NAK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB434CVV
size range: 150-350

source_name: Caenorhabditis elegans strain OP222 (unc-119(ed3) III; wgIs222) mixed sex L3 larva insertion targeting C. elegans daf-12

value: not applicable

value: L3 larva

value: ENCBS819UIZ at ENCODE; https://www.encodeproject.org/ENCBS819UIZ/


title: TF ChIP-seq from whole organism (ENCLB215ZZR)

description:
https://www.encodeproject.org/experiments/ENCSR791IKU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against AMA-1 in YA worms.
experiment encode accession: ENCSR791IKU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR368HRR
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB215ZZR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL489 (unc-119(ed3) III; vrIs104 [pPIE-1::AMA-1:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans ama-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AMA-1

value: young adult

value: Michael Snyder

value: ENCBS355MYE at ENCODE; https://www.encodeproject.org/ENCBS355MYE/


title: TF ChIP-seq from whole organism (ENCLB675YDR)

description:
https://www.encodeproject.org/experiments/ENCSR791IKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against AMA-1 in YA worms.
experiment encode accession: ENCSR791IKU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR368HRR
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB675YDR
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: unknown

value: ENCBS122EJJ at ENCODE; https://www.encodeproject.org/ENCBS122EJJ/


title: Control ChIP-seq from whole organism (ENCLB774XRD)

description:
https://www.encodeproject.org/experiments/ENCSR453EAC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR453EAC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB774XRD
size range: 150-350

source_name: Caenorhabditis elegans strain NC1639 ([wdIs49 (pttr39::UNC-55a::GFP; dpy-20+) III) mixed sex L2 larva insertion targeting C. elegans unc-55

value: whole organism

value: L2 larva

value: CGC

value: ENCBS212MAP at ENCODE; https://www.encodeproject.org/ENCBS212MAP/


title: TF ChIP-seq from whole organism (ENCLB796YPB)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB796YPB
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: Michael Snyder, Stanford

value: ENCBS297LNQ at ENCODE; https://www.encodeproject.org/ENCBS297LNQ/


title: TF ChIP-seq from whole organism (ENCLB130ACK)

description:
https://www.encodeproject.org/experiments/ENCSR453VRK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L1 larva worms.
experiment encode accession: ENCSR453VRK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR724QCI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB130ACK
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L1 larva insertion targeting C. elegans mdl-1

value: whole organisms

value: not applicable

value: L1 larva

value: ENCBS915BYB at ENCODE; https://www.encodeproject.org/ENCBS915BYB/


title: Control ChIP-seq from whole organism (ENCLB675LGT)

description:
https://www.encodeproject.org/experiments/ENCSR453EAC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR453EAC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB675LGT
size range: 150-350

value: ENCBS254XUS at ENCODE; https://www.encodeproject.org/ENCBS254XUS/


title: TF ChIP-seq from whole organism (ENCLB293UBW)

description:
https://www.encodeproject.org/experiments/ENCSR962LVB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-daf-12 in L3 larva worms.
experiment encode accession: ENCSR962LVB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR941NAK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB293UBW
size range: 150-350

value: L3 larva

value: ENCBS509HKC at ENCODE; https://www.encodeproject.org/ENCBS509HKC/


title: TF ChIP-seq from whole organism (ENCLB751RON)

description:
https://www.encodeproject.org/experiments/ENCSR453VRK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L1 larva worms.
experiment encode accession: ENCSR453VRK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR724QCI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB751RON
size range: 150-350

value: pooled male and female

value: ENCBS291XMH at ENCODE; https://www.encodeproject.org/ENCBS291XMH/


title: Control ChIP-seq from whole organism (ENCLB771CZO)

description:
https://www.encodeproject.org/experiments/ENCSR452WHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR452WHZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB771CZO
size range: 150-350

source_name: Caenorhabditis elegans strain OP27 (unc-119(ed3) III; wgIs27) mixed sex mixed stage (embryo) insertion targeting C. elegans mab-5

value: mixed stage (embryonic)

value: unknown

value: ENCBS364BUL at ENCODE; https://www.encodeproject.org/ENCBS364BUL/


title: Control ChIP-seq from whole organism (ENCLB353ZJO)

description:
https://www.encodeproject.org/experiments/ENCSR453EAC/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR453EAC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB353ZJO
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-55

value: L2 larva

value: Michael Snyder

value: ENCBS202HGK at ENCODE; https://www.encodeproject.org/ENCBS202HGK/


title: Control ChIP-seq from whole organism (ENCLB205DME)

description:
https://www.encodeproject.org/experiments/ENCSR790PHS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR790PHS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB205DME
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L1 larva insertion targeting C. elegans nhr-28

value: whole organisms

value: Michael Snyder, Stanford

value: CGC

value: ENCBS154NEO at ENCODE; https://www.encodeproject.org/ENCBS154NEO/


title: TF ChIP-seq from whole organism (ENCLB338GVU)

description:
https://www.encodeproject.org/experiments/ENCSR660LLT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against MBF-1 in L2 larva worms.
experiment encode accession: ENCSR660LLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR541IIQ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB338GVU
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MBF-1

value: ENCBS183WRQ at ENCODE; https://www.encodeproject.org/ENCBS183WRQ/


title: Control ChIP-seq from whole organism (ENCLB673GSL)

description:
https://www.encodeproject.org/experiments/ENCSR790PHS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR790PHS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB673GSL
size range: 150-350

value: pooled male and female

value: L1 larva

value: ENCBS974RZC at ENCODE; https://www.encodeproject.org/ENCBS974RZC/


title: TF ChIP-seq from whole organism (ENCLB239UXL)

description:
https://www.encodeproject.org/experiments/ENCSR961MUW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in L1 larva worms.
experiment encode accession: ENCSR961MUW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR145MWJ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB239UXL
size range: 150-350

source_name: Caenorhabditis elegans strain YL398 (unc119(ed3)III; vrIs55[pGES-1::LIN-35::GFP FLAG: LIN-35 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans lin-35

value: unknown

value: ENCBS371EZA at ENCODE; https://www.encodeproject.org/ENCBS371EZA/


title: TF ChIP-seq from whole organism (ENCLB483VHC)

description:
https://www.encodeproject.org/experiments/ENCSR961MUW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in L1 larva worms.
experiment encode accession: ENCSR961MUW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR145MWJ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB483VHC
size range: 150-350

value: whole organism

value: ENCBS868YCP at ENCODE; https://www.encodeproject.org/ENCBS868YCP/


title: TF ChIP-seq from whole organism (ENCLB293SKI)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB293SKI
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L3 larva

value: ENCBS054LVC at ENCODE; https://www.encodeproject.org/ENCBS054LVC/


title: TF ChIP-seq from whole organism (ENCLB914XER)

description:
https://www.encodeproject.org/experiments/ENCSR962VUP/
***************
biological replicate number: 2
technical replicate number: 3
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR962VUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR725FSB
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB914XER
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Michael Snyder

value: ENCBS687BWB at ENCODE; https://www.encodeproject.org/ENCBS687BWB/


title: TF ChIP-seq from whole organism (ENCLB809GLY)

description:
https://www.encodeproject.org/experiments/ENCSR790BPD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pax-1 in late-embryonic stage worms.
experiment encode accession: ENCSR790BPD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR112GYX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB809GLY
size range: 150-350

source_name: Caenorhabditis elegans strain OP117 (unc-119(ed3) III; wgIs117) mixed sex late embryo insertion targeting C. elegans pax-1

value: late embryonic

value: Michael Snyder, Stanford

value: CGC

value: ENCBS457FPZ at ENCODE; https://www.encodeproject.org/ENCBS457FPZ/


title: TF ChIP-seq from whole organism (ENCLB874YVR)

description:
https://www.encodeproject.org/experiments/ENCSR790BPD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pax-1 in late-embryonic stage worms.
experiment encode accession: ENCSR790BPD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR112GYX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB874YVR
size range: 150-350

value: not applicable

value: pooled male and female

value: ENCBS607ZZD at ENCODE; https://www.encodeproject.org/ENCBS607ZZD/


title: Control ChIP-seq from whole organism (ENCLB638NNO)

description:
https://www.encodeproject.org/experiments/ENCSR960DUC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR960DUC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB638NNO
size range: 150-350

source_name: Caenorhabditis elegans strain OP322 (unc-119(ed3) III; wgIs322) mixed sex L2 larva insertion targeting C. elegans ztf-4

value: L2 larva

value: unknown

value: ENCBS241AWP at ENCODE; https://www.encodeproject.org/ENCBS241AWP/


title: TF ChIP-seq from whole organism (ENCLB937DWA)

description:
https://www.encodeproject.org/experiments/ENCSR789XOA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in young adult worms.
experiment encode accession: ENCSR789XOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR008GMV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB937DWA
size range: 150-350

source_name: Caenorhabditis elegans strain YL390 (unc119(ed3)III; vrIs48 [pPIE-1::DPL-1::GFP FLAG: DPL-1 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans dpl-1

value: whole organism

value: young adult

value: ENCBS509MYT at ENCODE; https://www.encodeproject.org/ENCBS509MYT/


title: Control ChIP-seq from whole organism (ENCLB090MYM)

description:
https://www.encodeproject.org/experiments/ENCSR788SPS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR788SPS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB090MYM
size range: 150-350

source_name: Caenorhabditis elegans strain OP81 (unc-119(ed3) III; wgIs81) mixed sex L3 larva insertion targeting C. elegans eor-1

value: L3 larva

value: ENCBS053TBY at ENCODE; https://www.encodeproject.org/ENCBS053TBY/


title: Control ChIP-seq from whole organism (ENCLB042XVE)

description:
https://www.encodeproject.org/experiments/ENCSR789HPR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hlh-26-eGFP fusion proteins.
experiment encode accession: ENCSR789HPR
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB042XVE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12174 (st12174[hlh-26::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (66 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elega...

value: whole organisms

value: not collected

value: 66 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS754ITI at ENCODE; https://www.encodeproject.org/ENCBS754ITI/


title: TF ChIP-seq from whole organism (ENCLB354FAV)

description:
https://www.encodeproject.org/experiments/ENCSR789XOA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in young adult worms.
experiment encode accession: ENCSR789XOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR008GMV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB354FAV
size range: 150-350

value: not applicable

value: pooled male and female

value: Michael Snyder, Stanford

value: CGC

value: ENCBS780GUA at ENCODE; https://www.encodeproject.org/ENCBS780GUA/


title: Control ChIP-seq from whole organism (ENCLB640YFW)

description:
https://www.encodeproject.org/experiments/ENCSR788SPS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR788SPS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB640YFW
size range: 150-350

value: whole organism

value: unknown

value: ENCBS518QRI at ENCODE; https://www.encodeproject.org/ENCBS518QRI/


title: Control ChIP-seq from whole organism (ENCLB631KMD)

description:
https://www.encodeproject.org/experiments/ENCSR788PJR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR788PJR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB631KMD
size range: 150-350

source_name: Caenorhabditis elegans strain OP241 (unc-119(ed3) III; wgIs241) mixed sex L3 larva insertion targeting C. elegans ceh-28

value: L3 larva

value: ENCBS638SVK at ENCODE; https://www.encodeproject.org/ENCBS638SVK/


title: Control ChIP-seq from whole organism (ENCLB728VXD)

description:
https://www.encodeproject.org/experiments/ENCSR788PJR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR788PJR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB728VXD
size range: 150-350

value: whole organisms

value: ENCBS803BPT at ENCODE; https://www.encodeproject.org/ENCBS803BPT/


title: Control ChIP-seq from whole organism (ENCLB578DVA)

description:
https://www.encodeproject.org/experiments/ENCSR452WHZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR452WHZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB578DVA
size range: 150-350

value: mixed stage (embryonic)

value: ENCBS210RUX at ENCODE; https://www.encodeproject.org/ENCBS210RUX/


title: Control ChIP-seq from whole organism (ENCLB484IGI)

description:
https://www.encodeproject.org/experiments/ENCSR959KFB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR959KFB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB484IGI
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex young adult whole organism

value: young adult

value: ENCBS780CBM at ENCODE; https://www.encodeproject.org/ENCBS780CBM/


title: Control ChIP-seq from whole organism (ENCLB926LEM)

description:
https://www.encodeproject.org/experiments/ENCSR959KFB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR959KFB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB926LEM
size range: 150-350

value: ENCBS115SME at ENCODE; https://www.encodeproject.org/ENCBS115SME/


title: TF ChIP-seq from whole organism (ENCLB354YZT)

description:
https://www.encodeproject.org/experiments/ENCSR788JWO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L1 larva worms.
experiment encode accession: ENCSR788JWO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR301AAS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB354YZT
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L1 larva insertion targeting C. elegans nhr-11

value: not applicable

value: L1 larva

value: ENCBS045DXV at ENCODE; https://www.encodeproject.org/ENCBS045DXV/


title: TF ChIP-seq from whole organism (ENCLB370HFI)

description:
https://www.encodeproject.org/experiments/ENCSR668OMI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668OMI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR561RIA
encode release date: 2018-03-09
lab: Valerie Reinke, Yale
library encode accession: ENCLB370HFI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL517 hermaphrodite young adult insertion targeting C. elegans rpc-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS663UXS at ENCODE; https://www.encodeproject.org/ENCBS663UXS/


title: Control ChIP-seq from whole organism (ENCLB640YTU)

description:
https://www.encodeproject.org/experiments/ENCSR787UFX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR787UFX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB640YTU
size range: 150-350

source_name: Caenorhabditis elegans strain OP322 (unc-119(ed3) III; wgIs322) mixed sex L3 larva insertion targeting C. elegans ztf-4

value: whole organism

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS638RTI at ENCODE; https://www.encodeproject.org/ENCBS638RTI/


title: TF ChIP-seq from whole organism (ENCLB502GWI)

description:
https://www.encodeproject.org/experiments/ENCSR788JWO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L1 larva worms.
experiment encode accession: ENCSR788JWO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR301AAS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB502GWI
size range: 150-350

value: whole organisms

value: ENCBS225WYP at ENCODE; https://www.encodeproject.org/ENCBS225WYP/


title: Control ChIP-seq from whole organism (ENCLB506BMH)

description:
https://www.encodeproject.org/experiments/ENCSR784WEG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR784WEG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB506BMH
size range: 150-350

source_name: Caenorhabditis elegans strain OP241 (unc-119(ed3) III; wgIs241) mixed sex L4 larva insertion targeting C. elegans ceh-28

value: not applicable

value: L4 larva

value: ENCBS060JCI at ENCODE; https://www.encodeproject.org/ENCBS060JCI/


title: TF ChIP-seq from whole organism (ENCLB706CWP)

description:
https://www.encodeproject.org/experiments/ENCSR656GKY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against DAF-16 in L4 larva worms.
experiment encode accession: ENCSR656GKY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR243FJF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB706CWP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain XE1464 (unc-119(ed3) III;) mixed sex L4 larva insertion targeting C. elegans daf-16

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: Michael Snyder

value: ENCBS392BOG at ENCODE; https://www.encodeproject.org/ENCBS392BOG/


title: Control ChIP-seq from whole organism (ENCLB907VYN)

description:
https://www.encodeproject.org/experiments/ENCSR785WCC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR785WCC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB907VYN
size range: 150-350

source_name: Caenorhabditis elegans strain OP354 (unc-119(tm4063) III; wgIs354) mixed sex L2 larva insertion targeting C. elegans elt-1

value: L2 larva

value: ENCBS064AJH at ENCODE; https://www.encodeproject.org/ENCBS064AJH/


title: Control ChIP-seq from whole organism (ENCLB475YOE)

description:
https://www.encodeproject.org/experiments/ENCSR784WEG/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR784WEG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB475YOE
size range: 150-350

value: whole organism

value: ENCBS252YAQ at ENCODE; https://www.encodeproject.org/ENCBS252YAQ/


title: Control ChIP-seq from whole organism (ENCLB687STH)

description:
https://www.encodeproject.org/experiments/ENCSR785WCC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR785WCC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB687STH
size range: 150-350

value: pooled male and female

value: ENCBS924KQZ at ENCODE; https://www.encodeproject.org/ENCBS924KQZ/


title: TF ChIP-seq from whole organism (ENCLB318CGI)

description:
https://www.encodeproject.org/experiments/ENCSR656GKY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against DAF-16 in L4 larva worms.
experiment encode accession: ENCSR656GKY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR243FJF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB318CGI
fragmentation methods: sonication (generic microtip)

value: unknown

value: Michael Snyder, Stanford

value: ENCBS487UFT at ENCODE; https://www.encodeproject.org/ENCBS487UFT/


title: TF ChIP-seq from whole organism (ENCLB023NFD)

description:
https://www.encodeproject.org/experiments/ENCSR783JDK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against DPL-1 in L1 larva worms.
experiment encode accession: ENCSR783JDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR014QVQ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB023NFD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL448 (unc-119(ed3)III; vrIs83 [pGES-1::DPL-1::GFP FLAG: DPL-1 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans dpl-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DPL-1

value: L1 larva

value: ENCBS255GLA at ENCODE; https://www.encodeproject.org/ENCBS255GLA/


title: Control ChIP-seq from whole organism (ENCLB616PJQ)

description:
https://www.encodeproject.org/experiments/ENCSR787UFX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR787UFX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB616PJQ
size range: 150-350

value: not applicable

value: L3 larva

value: CGC

value: ENCBS938NHK at ENCODE; https://www.encodeproject.org/ENCBS938NHK/


title: TF ChIP-seq from whole organism (ENCLB700FES)

description:
https://www.encodeproject.org/experiments/ENCSR798QYD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against SNPC-4 in YA worms.
experiment encode accession: ENCSR798QYD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR199VEK
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB700FES
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex young adult insertion targeting C. elegans snpc-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: young adult

value: Michael Snyder

value: ENCBS316YCG at ENCODE; https://www.encodeproject.org/ENCBS316YCG/


title: TF ChIP-seq from whole organism (ENCLB611DQA)

description:
https://www.encodeproject.org/experiments/ENCSR783JDK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against DPL-1 in L1 larva worms.
experiment encode accession: ENCSR783JDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR014QVQ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB611DQA
fragmentation methods: sonication (generic microtip)

value: whole organism

value: pooled male and female

value: ENCBS410EDB at ENCODE; https://www.encodeproject.org/ENCBS410EDB/


title: TF ChIP-seq from whole organism (ENCLB056JPS)

description:
https://www.encodeproject.org/experiments/ENCSR655IKM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-elt-1 in L2 larva worms.
experiment encode accession: ENCSR655IKM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR785WCC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB056JPS
size range: 150-350

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS064AJH at ENCODE; https://www.encodeproject.org/ENCBS064AJH/


title: Control ChIP-seq from whole organism (ENCLB985BIT)

description:
https://www.encodeproject.org/experiments/ENCSR960DUC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR960DUC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB985BIT
size range: 150-350

value: whole organisms

value: ENCBS758JJZ at ENCODE; https://www.encodeproject.org/ENCBS758JJZ/


title: TF ChIP-seq from whole organism (ENCLB058IAD)

description:
https://www.encodeproject.org/experiments/ENCSR655OIS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-daf-12 in L4 larva worms.
experiment encode accession: ENCSR655OIS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR606HQA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB058IAD
size range: 150-350

source_name: Caenorhabditis elegans strain OP222 (unc-119(ed3) III; wgIs222) mixed sex L4 larva insertion targeting C. elegans daf-12

value: not applicable

value: L4 larva

value: ENCBS742QXZ at ENCODE; https://www.encodeproject.org/ENCBS742QXZ/


title: TF ChIP-seq from whole organism (ENCLB044AKQ)

description:
https://www.encodeproject.org/experiments/ENCSR655OIS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-daf-12 in L4 larva worms.
experiment encode accession: ENCSR655OIS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR606HQA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB044AKQ
size range: 150-350

value: CGC

value: ENCBS491RFM at ENCODE; https://www.encodeproject.org/ENCBS491RFM/


title: TF ChIP-seq from whole organism (ENCLB241ODM)

description:
https://www.encodeproject.org/experiments/ENCSR655IKM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-elt-1 in L2 larva worms.
experiment encode accession: ENCSR655IKM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR785WCC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB241ODM
size range: 150-350

value: ENCBS924KQZ at ENCODE; https://www.encodeproject.org/ENCBS924KQZ/


title: TF ChIP-seq from whole organism (ENCLB362NVO)

description:
https://www.encodeproject.org/experiments/ENCSR782ESD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L4 larva worms.
experiment encode accession: ENCSR782ESD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR569UBF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB362NVO
size range: 150-350

source_name: Caenorhabditis elegans strain OP304 (unc-119(ed3) III; wgIs304) mixed sex L4 larva insertion targeting C. elegans fos-1

value: ENCBS956HKX at ENCODE; https://www.encodeproject.org/ENCBS956HKX/


title: Control ChIP-seq from whole organism (ENCLB596DTQ)

description:
https://www.encodeproject.org/experiments/ENCSR452BKA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR452BKA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB596DTQ
size range: 150-350

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L3 larva insertion targeting C. elegans ceh-82

value: L3 larva

value: ENCBS769CZB at ENCODE; https://www.encodeproject.org/ENCBS769CZB/


title: TF ChIP-seq from whole organism (ENCLB683IFU)

description:
https://www.encodeproject.org/experiments/ENCSR781MPH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-13 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR781MPH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR641JZF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB683IFU
size range: 150-350

source_name: Caenorhabditis elegans strain OP51 (unc-119(ed3) III; wgIs51) mixed sex mixed stage (embryo) insertion targeting C. elegans lin-13

value: whole organism

value: pooled male and female

value: mixed stage (embryonic)

value: ENCBS147FQD at ENCODE; https://www.encodeproject.org/ENCBS147FQD/


title: TF ChIP-seq from whole organism (ENCLB879CES)

description:
https://www.encodeproject.org/experiments/ENCSR781MPH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-13 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR781MPH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR641JZF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB879CES
size range: 150-350

value: unknown

value: Michael Snyder, Stanford

value: ENCBS645AKG at ENCODE; https://www.encodeproject.org/ENCBS645AKG/


title: Control ChIP-seq from whole organism (ENCLB161KHX)

description:
https://www.encodeproject.org/experiments/ENCSR780YWP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in early embryonic worms.
experiment encode accession: ENCSR780YWP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB161KHX
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex early embryo whole organism

value: whole organisms

value: early embryonic

value: ENCBS627JVV at ENCODE; https://www.encodeproject.org/ENCBS627JVV/


title: Control ChIP-seq from whole organism (ENCLB009VHL)

description:
https://www.encodeproject.org/experiments/ENCSR653UXP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR653UXP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB009VHL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL457 (unc-119(ed3)III;vrIs87[pPIE-1::GEI-11::GFP::GEI-11 3'UTR,unc-119(+)) mixed sex young adult insertion targeting C. elegans snpc-4

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: young adult

value: Michael Snyder

value: ENCBS920SSR at ENCODE; https://www.encodeproject.org/ENCBS920SSR/


title: TF ChIP-seq from whole organism (ENCLB260HCS)

description:
https://www.encodeproject.org/experiments/ENCSR782ESD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L4 larva worms.
experiment encode accession: ENCSR782ESD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR569UBF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB260HCS
size range: 150-350

value: L4 larva

value: CGC

value: ENCBS384MKJ at ENCODE; https://www.encodeproject.org/ENCBS384MKJ/


title: Control ChIP-seq from whole organism (ENCLB369UUX)

description:
https://www.encodeproject.org/experiments/ENCSR653UXP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR653UXP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB369UUX
fragmentation methods: sonication (generic microtip)

value: whole organism

value: pooled male and female

value: ENCBS521CLL at ENCODE; https://www.encodeproject.org/ENCBS521CLL/


title: Control ChIP-seq from whole organism (ENCLB473HEA)

description:
https://www.encodeproject.org/experiments/ENCSR951GLF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR951GLF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB473HEA
size range: 150-350

source_name: Caenorhabditis elegans strain YL468 (unc-119(ed3)III; vrIs93 [pMEX-5::LIN-35:GFP:FLAG::LIN-35 3'UTR, unc-119 (+)])) mixed sex young adult insertion targeting C. elegans lin-35

value: unknown

value: ENCBS305XJW at ENCODE; https://www.encodeproject.org/ENCBS305XJW/


title: Control ChIP-seq from whole organism (ENCLB774ZZV)

description:
https://www.encodeproject.org/experiments/ENCSR951GLF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR951GLF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB774ZZV
size range: 150-350

value: Michael Snyder, Stanford

value: ENCBS345XUX at ENCODE; https://www.encodeproject.org/ENCBS345XUX/


title: TF ChIP-seq from whole organism (ENCLB268VKT)

description:
https://www.encodeproject.org/experiments/ENCSR950JWH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in L2 larva worms.
experiment encode accession: ENCSR950JWH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR849GNY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB268VKT
size range: 150-350

source_name: Caenorhabditis elegans strain OP228 (unc-119(ed3) III; wgIs228) mixed sex L2 larva insertion targeting C. elegans nhr-237

value: whole organisms

value: L2 larva

value: ENCBS462BGB at ENCODE; https://www.encodeproject.org/ENCBS462BGB/


title: TF ChIP-seq from whole organism (ENCLB575NFY)

description:
https://www.encodeproject.org/experiments/ENCSR779JCL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L2 larva worms.
experiment encode accession: ENCSR779JCL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR815SRO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB575NFY
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L2 larva insertion targeting C. elegans unc-62

value: not applicable

value: ENCBS988NDZ at ENCODE; https://www.encodeproject.org/ENCBS988NDZ/


title: TF ChIP-seq from whole organism (ENCLB150GDU)

description:
https://www.encodeproject.org/experiments/ENCSR950JWH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in L2 larva worms.
experiment encode accession: ENCSR950JWH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR849GNY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB150GDU
size range: 150-350

value: ENCBS286JEK at ENCODE; https://www.encodeproject.org/ENCBS286JEK/


title: Control ChIP-seq from whole organism (ENCLB530WSI)

description:
https://www.encodeproject.org/experiments/ENCSR949QYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR949QYZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB530WSI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L3 larva insertion targeting C. elegans egl-27

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L3 larva

value: Michael Snyder

value: ENCBS496BGA at ENCODE; https://www.encodeproject.org/ENCBS496BGA/


title: Control ChIP-seq from whole organism (ENCLB452POZ)

description:
https://www.encodeproject.org/experiments/ENCSR949QYZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR949QYZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB452POZ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: ENCBS085NSX at ENCODE; https://www.encodeproject.org/ENCBS085NSX/


title: TF ChIP-seq from whole organism (ENCLB766VKB)

description:
https://www.encodeproject.org/experiments/ENCSR779JCL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L2 larva worms.
experiment encode accession: ENCSR779JCL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR815SRO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB766VKB
size range: 150-350

value: pooled male and female

value: CGC

value: ENCBS575YCX at ENCODE; https://www.encodeproject.org/ENCBS575YCX/


title: TF ChIP-seq from whole organism (ENCLB683CCM)

description:
https://www.encodeproject.org/experiments/ENCSR451BYE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-77 in L4 larva worms.
experiment encode accession: ENCSR451BYE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR034DCF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB683CCM
size range: 150-350

source_name: Caenorhabditis elegans strain OP353 (unc-119(tm4063) III; wgIs353) mixed sex L4 larva insertion targeting C. elegans nhr-77

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS434WCK at ENCODE; https://www.encodeproject.org/ENCBS434WCK/


title: TF ChIP-seq from whole organism (ENCLB186IRN)

description:
https://www.encodeproject.org/experiments/ENCSR451BYE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-77 in L4 larva worms.
experiment encode accession: ENCSR451BYE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR034DCF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB186IRN
size range: 150-350

value: whole organisms

value: ENCBS791ZZG at ENCODE; https://www.encodeproject.org/ENCBS791ZZG/


title: TF ChIP-seq from whole organism (ENCLB663BMU)

description:
https://www.encodeproject.org/experiments/ENCSR530MRJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530MRJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR557GAY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB663BMU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG8319-GFP mixed sex prepupa insertion targeting D. melanogaster CG8319

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8319

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS413HYM at ENCODE; https://www.encodeproject.org/ENCBS413HYM/


title: TF ChIP-seq from whole organism (ENCLB031ZVQ)

description:
https://www.encodeproject.org/experiments/ENCSR532YPP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing disco-r-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR532YPP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR344HOX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB031ZVQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain disco-r-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster disco-r

value: disco-r

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to disco

value: embryonic

value: 0-24 hour

value: ENCBS399PNQ at ENCODE; https://www.encodeproject.org/ENCBS399PNQ/


title: Control ChIP-seq from whole organism (ENCLB050DST)

description:
https://www.encodeproject.org/experiments/ENCSR949QYZ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR949QYZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB050DST
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder

value: ENCBS326QQC at ENCODE; https://www.encodeproject.org/ENCBS326QQC/


title: Control ChIP-seq from whole organism (ENCLB596WGC)

description:
https://www.encodeproject.org/experiments/ENCSR949QYZ/
***************
biological replicate number: 4
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR949QYZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB596WGC
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Michael Snyder, Stanford

value: ENCBS088IST at ENCODE; https://www.encodeproject.org/ENCBS088IST/


title: Control ChIP-seq from whole organism (ENCLB448QLL)

description:
https://www.encodeproject.org/experiments/ENCSR452BKA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR452BKA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB448QLL
size range: 150-350

value: CGC

value: ENCBS260TNL at ENCODE; https://www.encodeproject.org/ENCBS260TNL/


title: TF ChIP-seq from whole organism (ENCLB692IGJ)

description:
https://www.encodeproject.org/experiments/ENCSR530MRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530MRJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR557GAY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB692IGJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8319

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS563WXQ at ENCODE; https://www.encodeproject.org/ENCBS563WXQ/


title: Control ChIP-seq from whole organism (ENCLB423YWJ)

description:
https://www.encodeproject.org/experiments/ENCSR653LES/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR653LES
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB423YWJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: pooled male and female

value: L1 larva

value: ENCBS582SGV at ENCODE; https://www.encodeproject.org/ENCBS582SGV/


title: Control ChIP-seq from whole organism (ENCLB339BZR)

description:
https://www.encodeproject.org/experiments/ENCSR843KFW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing maf-S-eGFP fusion proteins.
experiment encode accession: ENCSR843KFW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB339BZR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain maf-S-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster maf-S

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to maf-S

value: embryonic

value: 0-24 hour

value: ENCBS637KRB at ENCODE; https://www.encodeproject.org/ENCBS637KRB/


title: Control ChIP-seq from whole organism (ENCLB964JNR)

description:
https://www.encodeproject.org/experiments/ENCSR653LES/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR653LES
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB964JNR
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS260UJM at ENCODE; https://www.encodeproject.org/ENCBS260UJM/


title: TF ChIP-seq from whole organism (ENCLB406UHX)

description:
https://www.encodeproject.org/experiments/ENCSR530MRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530MRJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR557GAY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB406UHX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8319

value: prepupa

value: Kevin White, UChicago

value: ENCBS012NTO at ENCODE; https://www.encodeproject.org/ENCBS012NTO/


title: Control ChIP-seq from whole organism (ENCLB322HUZ)

description:
https://www.encodeproject.org/experiments/ENCSR840ESX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Med-eGFP fusion proteins.
experiment encode accession: ENCSR840ESX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB322HUZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Med-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Med

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Med

value: pooled male and female

value: Kevin White

value: ENCBS442HMO at ENCODE; https://www.encodeproject.org/ENCBS442HMO/


title: Control ChIP-seq from whole organism (ENCLB268SRA)

description:
https://www.encodeproject.org/experiments/ENCSR780YWP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in early embryonic worms.
experiment encode accession: ENCSR780YWP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB268SRA
size range: 150-350

value: early embryonic

value: CGC

value: ENCBS515ILF at ENCODE; https://www.encodeproject.org/ENCBS515ILF/


title: Control ChIP-seq from whole organism (ENCLB024UQX)

description:
https://www.encodeproject.org/experiments/ENCSR779YVP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR779YVP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB024UQX
size range: 150-350

source_name: Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L1 larva insertion targeting C. elegans zag-1

value: whole organisms

value: not applicable

value: L1 larva

value: ENCBS685PXR at ENCODE; https://www.encodeproject.org/ENCBS685PXR/


title: Control ChIP-seq from whole organism (ENCLB929BEN)

description:
https://www.encodeproject.org/experiments/ENCSR779YVP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR779YVP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB929BEN
size range: 150-350

value: unknown

value: Michael Snyder, Stanford

value: ENCBS984UBW at ENCODE; https://www.encodeproject.org/ENCBS984UBW/


title: TF ChIP-seq from whole organism (ENCLB521FXI)

description:
https://www.encodeproject.org/experiments/ENCSR776UKD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-39 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR776UKD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626THZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB521FXI
size range: 150-350

source_name: Caenorhabditis elegans strain OP186 (unc-119(ed3) III; wgIs186) mixed sex mixed stage (embryo) insertion targeting C. elegans unc-39

value: whole organism

value: mixed stage (embryonic)

value: ENCBS208ZOC at ENCODE; https://www.encodeproject.org/ENCBS208ZOC/


title: TF ChIP-seq from whole organism (ENCLB414YZH)

description:
https://www.encodeproject.org/experiments/ENCSR522NJB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing repo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522NJB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR294UFC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB414YZH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain repo-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster repo

value: repo

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to repo

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS207FAB at ENCODE; https://www.encodeproject.org/ENCBS207FAB/


title: TF ChIP-seq from whole organism (ENCLB177YQO)

description:
https://www.encodeproject.org/experiments/ENCSR522NJB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing repo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522NJB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR294UFC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB177YQO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: Kevin White

value: ENCBS630IOL at ENCODE; https://www.encodeproject.org/ENCBS630IOL/


title: TF ChIP-seq from whole organism (ENCLB244BAP)

description:
https://www.encodeproject.org/experiments/ENCSR776UKD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-39 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR776UKD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626THZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB244BAP
size range: 150-350

value: whole organisms

value: not applicable

value: CGC

value: ENCBS013TOT at ENCODE; https://www.encodeproject.org/ENCBS013TOT/


title: TF ChIP-seq from whole organism (ENCLB739UHB)

description:
https://www.encodeproject.org/experiments/ENCSR532YPP/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing disco-r-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR532YPP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR344HOX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB739UHB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: disco-r

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to disco

value: ENCBS369RUC at ENCODE; https://www.encodeproject.org/ENCBS369RUC/


title: Control ChIP-seq from whole organism (ENCLB910MTO)

description:
https://www.encodeproject.org/experiments/ENCSR839RAE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12942-eGFP fusion proteins.
experiment encode accession: ENCSR839RAE
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB910MTO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12942-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG12942

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12942

value: ENCBS729XSG at ENCODE; https://www.encodeproject.org/ENCBS729XSG/


title: TF ChIP-seq from whole organism (ENCLB844AWF)

description:
https://www.encodeproject.org/experiments/ENCSR518FUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pdm3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR518FUJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR691LGL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB844AWF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pdm3-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster pdm3

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pdm3

value: prepupa

value: unknown

tag: fly synchronization stage

value: white prepupa

value: ENCBS253NLU at ENCODE; https://www.encodeproject.org/ENCBS253NLU/


title: TF ChIP-seq from whole organism (ENCLB922AAN)

description:
https://www.encodeproject.org/experiments/ENCSR653IDD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NFYA-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR653IDD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR458NUL
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB922AAN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP404 (unc-119(tm4063) III; wgIs404) hermaphrodite L3 larva insertion targeting C. elegans nfya-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: hermaphrodite

value: L3 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS378FBI at ENCODE; https://www.encodeproject.org/ENCBS378FBI/


title: TF ChIP-seq from whole organism (ENCLB590JOO)

description:
https://www.encodeproject.org/experiments/ENCSR652MCL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against UNC-62 in L4 worms.
experiment encode accession: ENCSR652MCL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR191QNY
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB590JOO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP602 mixed sex L4 larva insertion targeting C. elegans unc-62

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-62

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS019WPE at ENCODE; https://www.encodeproject.org/ENCBS019WPE/


title: Control ChIP-seq from whole organism (ENCLB097YNZ)

description:
https://www.encodeproject.org/experiments/ENCSR948MUA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR948MUA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB097YNZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP219 (unc-119(ed3) III; wgIs219) mixed sex L4 larva insertion targeting C. elegans attf-4

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C05D10.1

value: unknown

value: ENCBS387GGQ at ENCODE; https://www.encodeproject.org/ENCBS387GGQ/


title: Control ChIP-seq from whole organism (ENCLB761RKR)

description:
https://www.encodeproject.org/experiments/ENCSR835OKW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ERR-eGFP fusion proteins.
experiment encode accession: ENCSR835OKW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB761RKR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ERR-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ERR

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ERR

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS467FXO at ENCODE; https://www.encodeproject.org/ENCBS467FXO/


title: Control ChIP-seq from whole organism (ENCLB170RZU)

description:
https://www.encodeproject.org/experiments/ENCSR948MUA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR948MUA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB170RZU
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: ENCBS194YLP at ENCODE; https://www.encodeproject.org/ENCBS194YLP/


title: TF ChIP-seq from whole organism (ENCLB468ZEM)

description:
https://www.encodeproject.org/experiments/ENCSR518FUJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pdm3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR518FUJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR691LGL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB468ZEM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pdm3

value: pooled male and female

value: prepupa

value: white prepupa

value: ENCBS638OJT at ENCODE; https://www.encodeproject.org/ENCBS638OJT/


title: TF ChIP-seq from whole organism (ENCLB518FUG)

description:
https://www.encodeproject.org/experiments/ENCSR518FUJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pdm3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR518FUJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR691LGL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB518FUG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS027YWK at ENCODE; https://www.encodeproject.org/ENCBS027YWK/


title: Control ChIP-seq from whole organism (ENCLB748NNO)

description:
https://www.encodeproject.org/experiments/ENCSR948MUA/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR948MUA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB748NNO
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C05D10.1

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS587PMV at ENCODE; https://www.encodeproject.org/ENCBS587PMV/


title: TF ChIP-seq from whole organism (ENCLB782TQW)

description:
https://www.encodeproject.org/experiments/ENCSR833LUF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing odsH-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR833LUF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR320AIQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB782TQW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain OdsH-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster OdsH

value: OdsH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to odsH

value: Kevin White, UChicago

value: Kevin White

value: ENCBS252GNA at ENCODE; https://www.encodeproject.org/ENCBS252GNA/