title: Control ChIP-seq from whole organism (ENCLB984YZL)

description:
https://www.encodeproject.org/experiments/ENCSR608DYO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR608DYO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB984YZL
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L3 larva whole organism

value: L3 larva

value: CGC

value: ENCBS854GCM at ENCODE; https://www.encodeproject.org/ENCBS854GCM/


title: TF ChIP-seq from whole organism (ENCLB581LON)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR158PGO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LSY-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR158PGO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR614DFZ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB581LON
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP401 hermaphrodite young adult insertion targeting C. elegans lsy-27

tag: antibody

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-27

tag: Sex

value: hermaphrodite

tag: dev stage

value: young adult

tag: age

value: unknown

tag: lab

value: Valerie Reinke, Yale

tag: source

value: Valerie Reinke

tag: link

value: ENCBS801YMY at ENCODE; https://www.encodeproject.org/ENCBS801YMY/


title: TF ChIP-seq from whole organism (ENCLB142TVF)

description:
https://www.encodeproject.org/experiments/ENCSR903DUB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR903DUB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR603RRK
encode release date: 2018-02-15
lab: Kevin White, UChicago
library encode accession: ENCLB142TVF
fragmentation methods: sonication (Bioruptor generic)
size range: 175-275

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster psq

value: psq

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS848BRM at ENCODE; https://www.encodeproject.org/ENCBS848BRM/


title: TF ChIP-seq from whole organism (ENCLB163WXK)

description:
https://www.encodeproject.org/experiments/ENCSR775WXN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Meics-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR775WXN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR552ODH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB163WXK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Meics-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Meics

value: Meics

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Meics

value: embryonic

value: 0-24 hour

value: ENCBS953BMW at ENCODE; https://www.encodeproject.org/ENCBS953BMW/


title: TF ChIP-seq from whole organism (ENCLB234CPD)

description:
https://www.encodeproject.org/experiments/ENCSR791QVO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-eor-1 in L3 larva worms.
experiment encode accession: ENCSR791QVO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR531CCR
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB234CPD
size range: 150-350

source_name: Caenorhabditis elegans strain OP81 (unc-119(ed3) III; wgIs81) mixed sex L3 larva insertion targeting C. elegans eor-1

extract_protocol: not provided

value: whole organisms

value: not applicable

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS027ZHP at ENCODE; https://www.encodeproject.org/ENCBS027ZHP/


title: TF ChIP-seq from whole organism (ENCLB971WPU)

description:
https://www.encodeproject.org/experiments/ENCSR444JKK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ewg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR444JKK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR256ESG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB971WPU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ewg-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster ewg

value: ewg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ewg

value: pooled male and female

value: 0-14 hour

value: ENCBS403WAU at ENCODE; https://www.encodeproject.org/ENCBS403WAU/


title: TF ChIP-seq from whole organism (ENCLB400WGM)

description:
https://www.encodeproject.org/experiments/ENCSR444JKK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ewg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR444JKK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR256ESG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB400WGM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: Kevin White

value: ENCBS780DPQ at ENCODE; https://www.encodeproject.org/ENCBS780DPQ/


title: TF ChIP-seq from whole organism (ENCLB242QXV)

description:
https://www.encodeproject.org/experiments/ENCSR891UUT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3838-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR891UUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722SAA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB242QXV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG3838-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG3838

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3838

value: embryonic

value: 0-24 hour

value: ENCBS887PAH at ENCODE; https://www.encodeproject.org/ENCBS887PAH/


title: TF ChIP-seq from whole organism (ENCLB278CMP)

description:
https://www.encodeproject.org/experiments/ENCSR158PGO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LSY-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR158PGO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR614DFZ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB278CMP
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-27

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS937BIN at ENCODE; https://www.encodeproject.org/ENCBS937BIN/


title: TF ChIP-seq from whole organism (ENCLB500WTP)

description:
https://www.encodeproject.org/experiments/ENCSR604BQF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR604BQF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR240NKC
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB500WTP
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex mixed stage (embryo) insertion targeting C. elegans pha-4

value: whole organism

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS354QKI at ENCODE; https://www.encodeproject.org/ENCBS354QKI/


title: TF ChIP-seq from whole organism (ENCLB542SNI)

description:
https://www.encodeproject.org/experiments/ENCSR891UUT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3838-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR891UUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722SAA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB542SNI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3838

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS148ENP at ENCODE; https://www.encodeproject.org/ENCBS148ENP/


title: TF ChIP-seq from whole organism (ENCLB922FSP)

description:
https://www.encodeproject.org/experiments/ENCSR443NTZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2712-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR443NTZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR627RCN
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB922FSP
size range: 200-800

source_name: Drosophila melanogaster strain CG2712 mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG2712

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2712

value: 0-16 hour

value: ENCBS455IFX at ENCODE; https://www.encodeproject.org/ENCBS455IFX/


title: Control ChIP-seq from whole organism (ENCLB044BNV)

description:
https://www.encodeproject.org/experiments/ENCSR042ZGM/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR042ZGM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB044BNV
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L4 larva insertion targeting C. elegans nhr-28

value: whole organism

value: L4 larva

value: unknown

value: ENCBS901AIS at ENCODE; https://www.encodeproject.org/ENCBS901AIS/


title: TF ChIP-seq from whole organism (ENCLB201HER)

description:
https://www.encodeproject.org/experiments/ENCSR891UUT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3838-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR891UUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR722SAA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB201HER
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: ENCBS869HLM at ENCODE; https://www.encodeproject.org/ENCBS869HLM/


title: TF ChIP-seq from whole organism (ENCLB857PBQ)

description:
https://www.encodeproject.org/experiments/ENCSR604BQF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR604BQF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR240NKC
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB857PBQ
size range: 150-350

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS214ORT at ENCODE; https://www.encodeproject.org/ENCBS214ORT/


title: Control ChIP-seq from whole organism (ENCLB593NWQ)

description:
https://www.encodeproject.org/experiments/ENCSR443MCM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR443MCM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-09-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB593NWQ
size range: 150-350
instrument models: Illumina Genome Analyzer,Illumina Genome Analyzer IIx

source_name: Caenorhabditis elegans strain OP54 (unc-119(ed3) III; wgIs54) mixed sex L3 larva insertion targeting C. elegans egl-5

value: L3 larva

value: ENCBS696RBX at ENCODE; https://www.encodeproject.org/ENCBS696RBX/


title: TF ChIP-seq from whole organism (ENCLB311LDG)

description:
https://www.encodeproject.org/experiments/ENCSR443NTZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2712-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR443NTZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR627RCN
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB311LDG
size range: 200-800

value: whole organisms

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS462FLF at ENCODE; https://www.encodeproject.org/ENCBS462FLF/


title: TF ChIP-seq from whole organism (ENCLB786EDE)

description:
https://www.encodeproject.org/experiments/ENCSR443NTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2712-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR443NTZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR627RCN
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB786EDE
size range: 200-800

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2712

value: 0-16 hour

value: ENCBS100MRM at ENCODE; https://www.encodeproject.org/ENCBS100MRM/


title: TF ChIP-seq from whole organism (ENCLB193UJR)

description:
https://www.encodeproject.org/experiments/ENCSR948EEN/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dmrt99B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR948EEN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR214WCZ
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB193UJR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (6-16 hours) insertion targeting D. melanogaster dmrt99B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dmrt99B

value: pooled male and female

value: ENCBS402SFN at ENCODE; https://www.encodeproject.org/ENCBS402SFN/


title: TF ChIP-seq from whole organism (ENCLB468ASX)

description:
https://www.encodeproject.org/experiments/ENCSR890OUH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR890OUH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR960AXB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB468ASX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lz-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster lz

value: lz

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lz

value: prepupa

value: unknown

tag: fly synchronization stage

value: white prepupa

value: ENCBS637PEY at ENCODE; https://www.encodeproject.org/ENCBS637PEY/


title: TF ChIP-seq from whole organism (ENCLB510OOI)

description:
https://www.encodeproject.org/experiments/ENCSR713PDJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR713PDJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR114JYK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB510OOI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain insv-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster insv

value: insv

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS365SXK at ENCODE; https://www.encodeproject.org/ENCBS365SXK/


title: TF ChIP-seq from whole organism (ENCLB941BWY)

description:
https://www.encodeproject.org/experiments/ENCSR944MGS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR944MGS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR171ADY
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB941BWY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8281 embryo (0-20 hours) insertion targeting D. melanogaster CG8281

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8281

value: not collected

value: 0-20 hour

value: Kevin White

value: ENCBS393BVH at ENCODE; https://www.encodeproject.org/ENCBS393BVH/


title: TF ChIP-seq from whole organism (ENCLB840RBX)

description:
https://www.encodeproject.org/experiments/ENCSR948EEN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dmrt99B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR948EEN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR214WCZ
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB840RBX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dmrt99B

value: pooled male and female

value: ENCBS126LAY at ENCODE; https://www.encodeproject.org/ENCBS126LAY/


title: TF ChIP-seq from whole organism (ENCLB595DKU)

description:
https://www.encodeproject.org/experiments/ENCSR713PDJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR713PDJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR114JYK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB595DKU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: insv

value: ENCBS224OXT at ENCODE; https://www.encodeproject.org/ENCBS224OXT/


title: TF ChIP-seq from whole organism (ENCLB482GXC)

description:
https://www.encodeproject.org/experiments/ENCSR890OUH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR890OUH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR960AXB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB482GXC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: lz

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lz

value: prepupa

value: unknown

value: white prepupa

value: ENCBS598BVX at ENCODE; https://www.encodeproject.org/ENCBS598BVX/


title: TF ChIP-seq from whole organism (ENCLB326QZS)

description:
https://www.encodeproject.org/experiments/ENCSR232QHU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-blmp-1 in L1 larva worms.
experiment encode accession: ENCSR232QHU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR065RRX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB326QZS
size range: 150-350

source_name: Caenorhabditis elegans strain OP109 (unc-119(ed3) III; wgIs109) mixed sex L1 larva insertion targeting C. elegans blmp-1

value: whole organism

value: not applicable

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS554SGS at ENCODE; https://www.encodeproject.org/ENCBS554SGS/


title: TF ChIP-seq from whole organism (ENCLB782WGL)

description:
https://www.encodeproject.org/experiments/ENCSR629OQQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ama-1 in L3 larva worms.
experiment encode accession: ENCSR629OQQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR608DYO
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB782WGL
size range: 150-350

value: pooled male and female

value: L3 larva

value: ENCBS854GCM at ENCODE; https://www.encodeproject.org/ENCBS854GCM/


title: TF ChIP-seq from whole organism (ENCLB656WED)

description:
https://www.encodeproject.org/experiments/ENCSR045NJD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-tlp-1 in L1 larva worms.
experiment encode accession: ENCSR045NJD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR917RGN
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB656WED
size range: 150-350

source_name: Caenorhabditis elegans strain OP321 (unc-119(tm4063) III; wgIs321) mixed sex L1 larva insertion targeting C. elegans tlp-1

value: ENCBS279QTG at ENCODE; https://www.encodeproject.org/ENCBS279QTG/


title: TF ChIP-seq from whole organism (ENCLB030OXF)

description:
https://www.encodeproject.org/experiments/ENCSR652KCU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6813-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR652KCU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR431TEW
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB030OXF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6813-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG6813

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6813

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS863XBI at ENCODE; https://www.encodeproject.org/ENCBS863XBI/


title: TF ChIP-seq from whole organism (ENCLB799HCR)

description:
https://www.encodeproject.org/experiments/ENCSR629OQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ama-1 in L3 larva worms.
experiment encode accession: ENCSR629OQQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR608DYO
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB799HCR
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L3 larva whole organism

value: whole organisms

value: unknown

value: ENCBS502JGF at ENCODE; https://www.encodeproject.org/ENCBS502JGF/


title: Control ChIP-seq from whole organism (ENCLB804IML)

description:
https://www.encodeproject.org/experiments/ENCSR890EWP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Pif1B-eGFP fusion proteins.
experiment encode accession: ENCSR890EWP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB804IML
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pif1B-GFP mixed sex pupa insertion targeting D. melanogaster Pif1B

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1B

value: pupa

value: ENCBS998RIK at ENCODE; https://www.encodeproject.org/ENCBS998RIK/


title: Control ChIP-seq from whole organism (ENCLB438KIX)

description:
https://www.encodeproject.org/experiments/ENCSR041UOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR041UOO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB438KIX
size range: 150-350

source_name: Caenorhabditis elegans strain OP234 (unc-119(ed3) III; wgIs234) mixed sex L1 larva insertion targeting C. elegans jun-1

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS316RWY at ENCODE; https://www.encodeproject.org/ENCBS316RWY/


title: Control ChIP-seq from whole organism (ENCLB373LWJ)

description:
https://www.encodeproject.org/experiments/ENCSR943ZYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing MESR4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR943ZYI
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB373LWJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain MESR4-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster MESR4

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to MESR4

value: embryonic

value: 0-24 hour

value: ENCBS544KBJ at ENCODE; https://www.encodeproject.org/ENCBS544KBJ/


title: Control ChIP-seq from whole organism (ENCLB301MBC)

description:
https://www.encodeproject.org/experiments/ENCSR591CMN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing topi-eGFP fusion proteins.
experiment encode accession: ENCSR591CMN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB301MBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain topi-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster topi

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to topi

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS785BJF at ENCODE; https://www.encodeproject.org/ENCBS785BJF/


title: Control ChIP-seq from whole organism (ENCLB915XTG)

description:
https://www.encodeproject.org/experiments/ENCSR041UOO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR041UOO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB915XTG
size range: 150-350

value: whole organism

value: not applicable

value: unknown

value: ENCBS459ADS at ENCODE; https://www.encodeproject.org/ENCBS459ADS/


title: TF ChIP-seq from whole organism (ENCLB552ICS)

description:
https://www.encodeproject.org/experiments/ENCSR846GAO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR846GAO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR333PLH
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB552ICS
size range: 150-350

source_name: Caenorhabditis elegans strain OP70 (unc-119(ed3) III; wgIs70) mixed sex mixed stage (embryo) insertion targeting C. elegans mep-1

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS918DSF at ENCODE; https://www.encodeproject.org/ENCBS918DSF/


title: Control ChIP-seq from whole organism (ENCLB042XVZ)

description:
https://www.encodeproject.org/experiments/ENCSR772SBK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Blimp-1-eGFP fusion proteins.
experiment encode accession: ENCSR772SBK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB042XVZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Blimp-1-GFP mixed sex prepupa insertion targeting D. melanogaster Blimp-1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Blimp-1

value: ENCBS709WFL at ENCODE; https://www.encodeproject.org/ENCBS709WFL/


title: TF ChIP-seq from whole organism (ENCLB484TCF)

description:
https://www.encodeproject.org/experiments/ENCSR043YAI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against UNC-62 in D4 worms.
experiment encode accession: ENCSR043YAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR640BRI
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB484TCF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex dauer insertion targeting C. elegans unc-62

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-62

value: dauer

value: Michael Snyder

value: ENCBS574ZYV at ENCODE; https://www.encodeproject.org/ENCBS574ZYV/


title: TF ChIP-seq from whole organism (ENCLB376ZXH)

description:
https://www.encodeproject.org/experiments/ENCSR944MGS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR944MGS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR171ADY
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB376ZXH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8281

value: not collected

value: embryonic

value: 0-20 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS738FSM at ENCODE; https://www.encodeproject.org/ENCBS738FSM/


title: TF ChIP-seq from whole organism (ENCLB236CUL)

description:
https://www.encodeproject.org/experiments/ENCSR943QAF/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing salr-eGFP fusion proteins.
experiment encode accession: ENCSR943QAF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR306EEX
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB236CUL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain salr-GFP mixed sex prepupa (24 hours) insertion targeting D. melanogaster salr

value: salr

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to salr

value: pooled male and female

value: prepupa

value: 24 hour

value: ENCBS151LWS at ENCODE; https://www.encodeproject.org/ENCBS151LWS/


title: Control ChIP-seq from whole organism (ENCLB601TSW)

description:
https://www.encodeproject.org/experiments/ENCSR398PIP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sox14-eGFP fusion proteins.
experiment encode accession: ENCSR398PIP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB601TSW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox14-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Sox14

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox14

value: unknown

value: white prepupa

value: ENCBS628IXN at ENCODE; https://www.encodeproject.org/ENCBS628IXN/


title: TF ChIP-seq from whole organism (ENCLB936SKH)

description:
https://www.encodeproject.org/experiments/ENCSR896OQW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8632-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR896OQW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR826RWT
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB936SKH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8632-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster ZnT49B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8632

value: ENCBS765MBG at ENCODE; https://www.encodeproject.org/ENCBS765MBG/


title: Control ChIP-seq from whole organism (ENCLB137OOX)

description:
https://www.encodeproject.org/experiments/ENCSR927LZU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR927LZU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB137OOX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS519XNU at ENCODE; https://www.encodeproject.org/ENCBS519XNU/


title: Control ChIP-seq from whole organism (ENCLB007BWM)

description:
https://www.encodeproject.org/experiments/ENCSR041LTG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C06A8.2-eGFP fusion proteins.
experiment encode accession: ENCSR041LTG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB007BWM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL482 hermaphrodite young adult insertion targeting C. elegans snpc-1.1

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C06A8.2

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS826NQM at ENCODE; https://www.encodeproject.org/ENCBS826NQM/


title: TF ChIP-seq from whole organism (ENCLB226APH)

description:
https://www.encodeproject.org/experiments/ENCSR589XWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Su(var)3-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR589XWJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR260YDC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB226APH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Su(var)3-7-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Su(var)3-7

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)3-7

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS741OLJ at ENCODE; https://www.encodeproject.org/ENCBS741OLJ/


title: Control ChIP-seq from whole organism (ENCLB341KHO)

description:
https://www.encodeproject.org/experiments/ENCSR430JDM/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in late embryonic worms.
experiment encode accession: ENCSR430JDM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB341KHO
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex late embryo insertion targeting C. elegans pha-4

value: late embryonic

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS458DLR at ENCODE; https://www.encodeproject.org/ENCBS458DLR/


title: Control ChIP-seq from whole organism (ENCLB789OKD)

description:
https://www.encodeproject.org/experiments/ENCSR160SNG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing PAG-3-eGFP fusion proteins.
experiment encode accession: ENCSR160SNG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB789OKD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP154 (unc-119(ed3) III; wgIs154) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans pag-3

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAG-3

value: hermaphrodite

value: L1 larva

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS419RMG at ENCODE; https://www.encodeproject.org/ENCBS419RMG/


title: TF ChIP-seq from whole organism (ENCLB297TVF)

description:
https://www.encodeproject.org/experiments/ENCSR043YAI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against UNC-62 in D4 worms.
experiment encode accession: ENCSR043YAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR640BRI
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB297TVF
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-62

value: pooled male and female

value: dauer

value: Michael Snyder

value: ENCBS679TLB at ENCODE; https://www.encodeproject.org/ENCBS679TLB/


title: TF ChIP-seq from whole organism (ENCLB335UZM)

description:
https://www.encodeproject.org/experiments/ENCSR943QAF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing salr-eGFP fusion proteins.
experiment encode accession: ENCSR943QAF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR306EEX
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB335UZM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: salr

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to salr

value: prepupa

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS250JSF at ENCODE; https://www.encodeproject.org/ENCBS250JSF/


title: Control ChIP-seq from whole organism (ENCLB099CXC)

description:
https://www.encodeproject.org/experiments/ENCSR040DPF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR040DPF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB099CXC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L3 larva insertion targeting C. elegans ZK546.5

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS180VDO at ENCODE; https://www.encodeproject.org/ENCBS180VDO/


title: Control ChIP-seq from whole organism (ENCLB670JUQ)

description:
https://www.encodeproject.org/experiments/ENCSR596CGO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing pb-eGFP fusion proteins.
experiment encode accession: ENCSR596CGO
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB670JUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pb-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pb

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pb

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS051NQQ at ENCODE; https://www.encodeproject.org/ENCBS051NQQ/


title: Control ChIP-seq from whole organism (ENCLB119YUC)

description:
https://www.encodeproject.org/experiments/ENCSR608DYO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR608DYO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB119YUC
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L3 larva whole organism

value: CGC

value: ENCBS502JGF at ENCODE; https://www.encodeproject.org/ENCBS502JGF/


title: Control ChIP-seq from whole organism (ENCLB624UKG)

description:
https://www.encodeproject.org/experiments/ENCSR945JMM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR945JMM
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB624UKG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 8T-GFP mixed sex embryo (0-4 hours) insertion targeting D. melanogaster tll

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tll

value: 0-4 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS117XQZ at ENCODE; https://www.encodeproject.org/ENCBS117XQZ/


title: TF ChIP-seq from whole organism (ENCLB325QPC)

description:
https://www.encodeproject.org/experiments/ENCSR766CLL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR766CLL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR741UCB
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB325QPC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster cg

value: cg

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cg

value: ENCBS298JHA at ENCODE; https://www.encodeproject.org/ENCBS298JHA/


title: Control ChIP-seq from whole organism (ENCLB307JNA)

description:
https://www.encodeproject.org/experiments/ENCSR042ZGM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR042ZGM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB307JNA
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L4 larva insertion targeting C. elegans nhr-28

value: whole organisms

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS874VDT at ENCODE; https://www.encodeproject.org/ENCBS874VDT/


title: TF ChIP-seq from whole organism (ENCLB913SIG)

description:
https://www.encodeproject.org/experiments/ENCSR582OWB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR582OWB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR118IHI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB913SIG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG34406-GFP mixed sex prepupa insertion targeting D. melanogaster CG44002

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG44002

value: pooled male and female

value: prepupa

value: ENCBS351BWZ at ENCODE; https://www.encodeproject.org/ENCBS351BWZ/


title: Control ChIP-seq from whole organism (ENCLB358HUK)

description:
https://www.encodeproject.org/experiments/ENCSR042QHV/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR042QHV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB358HUK
size range: 150-350

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva insertion targeting C. elegans pqm-1

value: L3 larva

value: CGC

value: ENCBS240VLJ at ENCODE; https://www.encodeproject.org/ENCBS240VLJ/


title: TF ChIP-seq from whole organism (ENCLB427EFA)

description:
https://www.encodeproject.org/experiments/ENCSR586WBE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L3 larva worms.
experiment encode accession: ENCSR586WBE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR333ISV
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB427EFA
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L3 larva insertion targeting C. elegans lin-39

value: ENCBS007RSR at ENCODE; https://www.encodeproject.org/ENCBS007RSR/


title: TF ChIP-seq from whole organism (ENCLB747QYS)

description:
https://www.encodeproject.org/experiments/ENCSR586WBE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L3 larva worms.
experiment encode accession: ENCSR586WBE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR333ISV
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB747QYS
size range: 150-350

value: whole organism

value: ENCBS056ELQ at ENCODE; https://www.encodeproject.org/ENCBS056ELQ/


title: TF ChIP-seq from whole organism (ENCLB692LQJ)

description:
https://www.encodeproject.org/experiments/ENCSR232QHU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-blmp-1 in L1 larva worms.
experiment encode accession: ENCSR232QHU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR065RRX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB692LQJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP109 (unc-119(ed3) III; wgIs109) mixed sex L1 larva insertion targeting C. elegans blmp-1

value: not applicable

value: L1 larva

value: ENCBS383PLU at ENCODE; https://www.encodeproject.org/ENCBS383PLU/


title: Control ChIP-seq from whole organism (ENCLB353FDK)

description:
https://www.encodeproject.org/experiments/ENCSR150LOC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-1-eGFP fusion proteins.
experiment encode accession: ENCSR150LOC
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB353FDK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP207 (wgIs207(WRM0628B_D10(pRedFlp-Hgr)::unc-119-Nat(ztf-1[24953]::2XTY1-eGFP(C.ele)-3XFLAG)dFRT )) L2 larva (28.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-1

value: whole organisms

value: not collected

value: L2 larva

value: 28.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS172FPU at ENCODE; https://www.encodeproject.org/ENCBS172FPU/


title: TF ChIP-seq from whole organism (ENCLB553DYH)

description:
https://www.encodeproject.org/experiments/ENCSR555GAJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ama-1 in L2 larva worms.
experiment encode accession: ENCSR555GAJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR316CFG
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB553DYH
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L2 larva whole organism

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS178CLA at ENCODE; https://www.encodeproject.org/ENCBS178CLA/


title: TF ChIP-seq from whole organism (ENCLB238KYH)

description:
https://www.encodeproject.org/experiments/ENCSR555GAJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ama-1 in L2 larva worms.
experiment encode accession: ENCSR555GAJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR316CFG
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB238KYH
size range: 150-350

value: whole organism

value: CGC

value: ENCBS087JPO at ENCODE; https://www.encodeproject.org/ENCBS087JPO/


title: TF ChIP-seq from whole organism (ENCLB726MWA)

description:
https://www.encodeproject.org/experiments/ENCSR766CLL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR766CLL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR741UCB
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB726MWA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: cg

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cg

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS170OYN at ENCODE; https://www.encodeproject.org/ENCBS170OYN/


title: Control ChIP-seq from whole organism (ENCLB400XYN)

description:
https://www.encodeproject.org/experiments/ENCSR149RDA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR149RDA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB400XYN
size range: 150-350

source_name: Caenorhabditis elegans strain OP90 (unc-119(ed3) III; wgIs90) mixed sex L4 larva insertion targeting C. elegans nhr-6

value: whole organisms

value: L4 larva

value: ENCBS136CYM at ENCODE; https://www.encodeproject.org/ENCBS136CYM/


title: TF ChIP-seq from whole organism (ENCLB888FTD)

description:
https://www.encodeproject.org/experiments/ENCSR890OUH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR890OUH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR960AXB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB888FTD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lz-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster lz

value: lz

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lz

value: pooled male and female

value: prepupa

value: unknown

value: white prepupa

value: ENCBS156FAL at ENCODE; https://www.encodeproject.org/ENCBS156FAL/


title: Control ChIP-seq from whole organism (ENCLB552JFS)

description:
https://www.encodeproject.org/experiments/ENCSR240NKC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR240NKC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB552JFS
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex mixed stage (embryo) insertion targeting C. elegans pha-4

value: whole organism

value: not applicable

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS214ORT at ENCODE; https://www.encodeproject.org/ENCBS214ORT/


title: TF ChIP-seq from whole organism (ENCLB983LLN)

description:
https://www.encodeproject.org/experiments/ENCSR846GAO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR846GAO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR333PLH
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB983LLN
size range: 150-350

source_name: Caenorhabditis elegans strain OP70 (unc-119(ed3) III; wgIs70) mixed sex mixed stage (embryo) insertion targeting C. elegans mep-1

value: ENCBS703LWN at ENCODE; https://www.encodeproject.org/ENCBS703LWN/


title: TF ChIP-seq from whole organism (ENCLB344VKW)

description:
https://www.encodeproject.org/experiments/ENCSR943QAF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing salr-eGFP fusion proteins.
experiment encode accession: ENCSR943QAF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR306EEX
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB344VKW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain salr-GFP mixed sex prepupa (24 hours) insertion targeting D. melanogaster salr

value: salr

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to salr

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS346ZVE at ENCODE; https://www.encodeproject.org/ENCBS346ZVE/


title: Control ChIP-seq from whole organism (ENCLB873GDH)

description:
https://www.encodeproject.org/experiments/ENCSR040DPF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 worms.
experiment encode accession: ENCSR040DPF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB873GDH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L3 larva insertion targeting C. elegans ZK546.5

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder

value: ENCBS349TPV at ENCODE; https://www.encodeproject.org/ENCBS349TPV/


title: TF ChIP-seq from whole organism (ENCLB871HDT)

description:
https://www.encodeproject.org/experiments/ENCSR589XWJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Su(var)3-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR589XWJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR260YDC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB871HDT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Su(var)3-7-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Su(var)3-7

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)3-7

value: embryonic

value: 0-24 hour

value: ENCBS681LOE at ENCODE; https://www.encodeproject.org/ENCBS681LOE/


title: TF ChIP-seq from whole organism (ENCLB717OPK)

description:
https://www.encodeproject.org/experiments/ENCSR645UUT/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12219-eGFP fusion proteins.
experiment encode accession: ENCSR645UUT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR080OFD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB717OPK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12219-GFP mixed sex embryo (0-18 hours) insertion targeting D. melanogaster CG12219

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12219

value: 0-18 hour

value: ENCBS385SFK at ENCODE; https://www.encodeproject.org/ENCBS385SFK/


title: Control ChIP-seq from whole organism (ENCLB853SCY)

description:
https://www.encodeproject.org/experiments/ENCSR333ISV/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR333ISV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB853SCY
size range: 150-350

value: Michael Snyder, Stanford

value: CGC

value: ENCBS056ELQ at ENCODE; https://www.encodeproject.org/ENCBS056ELQ/


title: Control ChIP-seq from whole organism (ENCLB541RVG)

description:
https://www.encodeproject.org/experiments/ENCSR372VPK/
***************
biological replicate number: 1
technical replicate number: 3
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR372VPK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB541RVG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP62 (unc-119(ed3) III; wgIs62) mixed sex L2 larva insertion targeting C. elegans lin-11

value: pooled male and female

value: L2 larva

value: ENCBS485FXO at ENCODE; https://www.encodeproject.org/ENCBS485FXO/


title: Control ChIP-seq from whole organism (ENCLB707LZI)

description:
https://www.encodeproject.org/experiments/ENCSR647WJL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR647WJL
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB707LZI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hr78-GFP mixed sex embryo (8-16 hours) whole organism stably expressing C-terminal eGFP-tagged Hr78

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr78

value: Kevin White, UChicago

value: Kevin White

value: ENCBS179TLM at ENCODE; https://www.encodeproject.org/ENCBS179TLM/


title: TF ChIP-seq from whole organism (ENCLB613QKB)

description:
https://www.encodeproject.org/experiments/ENCSR392ANZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lbe-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR392ANZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR294UCJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB613QKB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lbe-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster lbe

value: lbe

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lbe

value: embryonic

value: ENCBS658OYF at ENCODE; https://www.encodeproject.org/ENCBS658OYF/


title: Control ChIP-seq from whole organism (ENCLB132UUD)

description:
https://www.encodeproject.org/experiments/ENCSR372VPK/
***************
biological replicate number: 1
technical replicate number: 2
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR372VPK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB132UUD
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: unknown


title: TF ChIP-seq from whole organism (ENCLB365ONM)

description:
https://www.encodeproject.org/experiments/ENCSR589XWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Su(var)3-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR589XWJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR260YDC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB365ONM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)3-7

value: 0-24 hour

value: ENCBS732GDH at ENCODE; https://www.encodeproject.org/ENCBS732GDH/


title: Control ChIP-seq from whole organism (ENCLB284PEE)

description:
https://www.encodeproject.org/experiments/ENCSR150SBQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing zfh-2-eGFP fusion proteins.
experiment encode accession: ENCSR150SBQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB284PEE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12167 (st12167[zfh-2::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (64.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. eleg...

value: not collected

value: young adult

value: 64.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS721JIR at ENCODE; https://www.encodeproject.org/ENCBS721JIR/


title: TF ChIP-seq from whole organism (ENCLB361WXS)

description:
https://www.encodeproject.org/experiments/ENCSR364IJK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ama-1 in L4 larva worms.
experiment encode accession: ENCSR364IJK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626WON
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB361WXS
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L4 larva whole organism

value: whole organism

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS935OYG at ENCODE; https://www.encodeproject.org/ENCBS935OYG/


title: Control ChIP-seq from whole organism (ENCLB212JCT)

description:
https://www.encodeproject.org/experiments/ENCSR372VPK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR372VPK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB212JCT
size range: 150-350

value: whole organisms

value: not applicable

value: L2 larva

value: unknown

value: ENCBS485FXO at ENCODE; https://www.encodeproject.org/ENCBS485FXO/


title: Control ChIP-seq from whole organism (ENCLB236SRM)

description:
https://www.encodeproject.org/experiments/ENCSR333ISV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR333ISV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB236SRM
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L3 larva insertion targeting C. elegans lin-39

value: L3 larva

value: ENCBS007RSR at ENCODE; https://www.encodeproject.org/ENCBS007RSR/


title: TF ChIP-seq from whole organism (ENCLB114WWW)

description:
https://www.encodeproject.org/experiments/ENCSR643MOM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing odd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR643MOM
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR257AYE
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB114WWW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain odd-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster odd

value: odd

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to odd

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS081GBQ at ENCODE; https://www.encodeproject.org/ENCBS081GBQ/


title: TF ChIP-seq from whole organism (ENCLB798QZI)

description:
https://www.encodeproject.org/experiments/ENCSR766CLL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR766CLL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR741UCB
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB798QZI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster cg

value: cg

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cg

value: pooled male and female

value: 0-24 hour

value: ENCBS799UXH at ENCODE; https://www.encodeproject.org/ENCBS799UXH/


title: TF ChIP-seq from whole organism (ENCLB017VUH)

description:
https://www.encodeproject.org/experiments/ENCSR225NFO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-skn-1 in L4 larva worms.
experiment encode accession: ENCSR225NFO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR911MDB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB017VUH
size range: 150-350

source_name: Caenorhabditis elegans strain OP342 (unc-119(ed3) III; wgIs342) mixed sex L4 larva insertion targeting C. elegans skn-1

value: whole organisms

value: not applicable

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS833FZH at ENCODE; https://www.encodeproject.org/ENCBS833FZH/


title: TF ChIP-seq from whole organism (ENCLB316KOO)

description:
https://www.encodeproject.org/experiments/ENCSR342TEL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-130 in L1 larva worms.
experiment encode accession: ENCSR342TEL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR036AJI
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB316KOO
size range: 150-350

source_name: Caenorhabditis elegans strain OP77 (unc-119(ed3) III; wgIs77) mixed sex L1 larva insertion targeting C. elegans unc-130

value: L1 larva

value: ENCBS590PQG at ENCODE; https://www.encodeproject.org/ENCBS590PQG/


title: TF ChIP-seq from whole organism (ENCLB158ARD)

description:
https://www.encodeproject.org/experiments/ENCSR582OWB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR582OWB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR118IHI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB158ARD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG34406-GFP mixed sex prepupa insertion targeting D. melanogaster CG44002

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG44002

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS292QDF at ENCODE; https://www.encodeproject.org/ENCBS292QDF/


title: TF ChIP-seq from whole organism (ENCLB929WMH)

description:
https://www.encodeproject.org/experiments/ENCSR872ZXK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HLH54F-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR872ZXK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR100ITO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB929WMH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HLH54F-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster HLH54F

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HLH54F

value: pooled male and female

value: embryonic

value: ENCBS463WWZ at ENCODE; https://www.encodeproject.org/ENCBS463WWZ/


title: TF ChIP-seq from whole organism (ENCLB529YVI)

description:
https://www.encodeproject.org/experiments/ENCSR225NFO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-skn-1 in L4 larva worms.
experiment encode accession: ENCSR225NFO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR911MDB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB529YVI
size range: 150-350

value: whole organisms

value: not applicable

value: L4 larva

value: ENCBS906WAX at ENCODE; https://www.encodeproject.org/ENCBS906WAX/


title: TF ChIP-seq from whole organism (ENCLB746OAN)

description:
https://www.encodeproject.org/experiments/ENCSR237CAI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-egl-5 in L3 larva worms.
experiment encode accession: ENCSR237CAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR443MCM
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB746OAN
size range: 150-350

source_name: Caenorhabditis elegans strain OP54 (unc-119(ed3) III; wgIs54) mixed sex L3 larva insertion targeting C. elegans egl-5

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS774FLL at ENCODE; https://www.encodeproject.org/ENCBS774FLL/


title: Control ChIP-seq from whole organism (ENCLB175KQT)

description:
https://www.encodeproject.org/experiments/ENCSR941FHT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR941FHT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB175KQT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12769 mixed sex embryo (10-24 hours) insertion targeting D. melanogaster CG12769

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12769

value: Kevin White, UChicago

value: ENCBS634OJR at ENCODE; https://www.encodeproject.org/ENCBS634OJR/


title: TF ChIP-seq from whole organism (ENCLB246KIX)

description:
https://www.encodeproject.org/experiments/ENCSR872ZXK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HLH54F-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR872ZXK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR100ITO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB246KIX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: 0-24 hour

value: Kevin White

value: ENCBS448EGR at ENCODE; https://www.encodeproject.org/ENCBS448EGR/


title: TF ChIP-seq from whole organism (ENCLB669NBZ)

description:
https://www.encodeproject.org/experiments/ENCSR643EOU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing l(3)neo38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR643EOU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR300JHR
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB669NBZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain l(3)neo38-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster l(3)neo38

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to l(3)neo38

value: pooled male and female

value: embryonic

value: ENCBS953FYC at ENCODE; https://www.encodeproject.org/ENCBS953FYC/


title: TF ChIP-seq from whole organism (ENCLB250QSD)

description:
https://www.encodeproject.org/experiments/ENCSR872ZXK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HLH54F-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR872ZXK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR100ITO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB250QSD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HLH54F

value: ENCBS004OUO at ENCODE; https://www.encodeproject.org/ENCBS004OUO/


title: TF ChIP-seq from whole organism (ENCLB210CJS)

description:
https://www.encodeproject.org/experiments/ENCSR582OWB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR582OWB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR118IHI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB210CJS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG44002

value: prepupa

value: unknown

value: ENCBS547JAE at ENCODE; https://www.encodeproject.org/ENCBS547JAE/


title: TF ChIP-seq from whole organism (ENCLB198NSV)

description:
https://www.encodeproject.org/experiments/ENCSR342TEL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-130 in L1 larva worms.
experiment encode accession: ENCSR342TEL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR036AJI
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB198NSV
size range: 150-350

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS467HOY at ENCODE; https://www.encodeproject.org/ENCBS467HOY/


title: TF ChIP-seq from whole organism (ENCLB991HEQ)

description:
https://www.encodeproject.org/experiments/ENCSR392ANZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing lbe-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR392ANZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR294UCJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB991HEQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: lbe

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lbe

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS358DFR at ENCODE; https://www.encodeproject.org/ENCBS358DFR/


title: TF ChIP-seq from whole organism (ENCLB999TDJ)

description:
https://www.encodeproject.org/experiments/ENCSR645UUT/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12219-eGFP fusion proteins.
experiment encode accession: ENCSR645UUT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR080OFD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB999TDJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12219

value: pooled male and female

value: embryonic

value: 0-18 hour

value: ENCBS041TFL at ENCODE; https://www.encodeproject.org/ENCBS041TFL/


title: Control ChIP-seq from whole organism (ENCLB064SSL)

description:
https://www.encodeproject.org/experiments/ENCSR149RDA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR149RDA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB064SSL
size range: 150-350

source_name: Caenorhabditis elegans strain OP90 (unc-119(ed3) III; wgIs90) mixed sex L4 larva insertion targeting C. elegans nhr-6

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS613XOJ at ENCODE; https://www.encodeproject.org/ENCBS613XOJ/


title: Control ChIP-seq from whole organism (ENCLB911SEB)

description:
https://www.encodeproject.org/experiments/ENCSR150SBQ/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing zfh-2-eGFP fusion proteins.
experiment encode accession: ENCSR150SBQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB911SEB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not collected

value: young adult

value: 64.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS016KRW at ENCODE; https://www.encodeproject.org/ENCBS016KRW/


title: TF ChIP-seq from whole organism (ENCLB617PTL)

description:
https://www.encodeproject.org/experiments/ENCSR393AKW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Myb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR393AKW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR626UBE
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB617PTL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Myb-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Myb

value: Myb

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Myb

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS164FKJ at ENCODE; https://www.encodeproject.org/ENCBS164FKJ/


title: TF ChIP-seq from whole organism (ENCLB310ITK)

description:
https://www.encodeproject.org/experiments/ENCSR143VPY/
***************
biological replicate number: 1
technical replicate number: 2
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR143VPY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR927LZU
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB310ITK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS825QKN at ENCODE; https://www.encodeproject.org/ENCBS825QKN/


title: TF ChIP-seq from whole organism (ENCLB730NSF)

description:
https://www.encodeproject.org/experiments/ENCSR146KCR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR146KCR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR150LOC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB730NSF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP207 (wgIs207(WRM0628B_D10(pRedFlp-Hgr)::unc-119-Nat(ztf-1[24953]::2XTY1-eGFP(C.ele)-3XFLAG)dFRT )) L2 larva (28.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-1

value: whole organism

value: not collected

value: L2 larva

value: 28.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS461QQS at ENCODE; https://www.encodeproject.org/ENCBS461QQS/


title: TF ChIP-seq from whole organism (ENCLB784UPM)

description:
https://www.encodeproject.org/experiments/ENCSR645UUT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12219-eGFP fusion proteins.
experiment encode accession: ENCSR645UUT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR080OFD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB784UPM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12219-GFP mixed sex embryo (0-18 hours) insertion targeting D. melanogaster CG12219

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12219

value: embryonic

value: 0-18 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS317LHW at ENCODE; https://www.encodeproject.org/ENCBS317LHW/


title: TF ChIP-seq from whole organism (ENCLB205GAA)

description:
https://www.encodeproject.org/experiments/ENCSR643EOU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing l(3)neo38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR643EOU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR300JHR
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB205GAA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to l(3)neo38

value: pooled male and female

value: 0-24 hour

value: ENCBS006BEU at ENCODE; https://www.encodeproject.org/ENCBS006BEU/


title: TF ChIP-seq from whole organism (ENCLB686DOM)

description:
https://www.encodeproject.org/experiments/ENCSR390QUD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sima-RB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR390QUD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR802IDG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB686DOM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sima-RB-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster sima

value: sima

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sima-RB

value: ENCBS452WVS at ENCODE; https://www.encodeproject.org/ENCBS452WVS/


title: TF ChIP-seq from whole organism (ENCLB763GUM)

description:
https://www.encodeproject.org/experiments/ENCSR143VPY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR143VPY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR927LZU
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB763GUM
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS825QKN at ENCODE; https://www.encodeproject.org/ENCBS825QKN/


title: TF ChIP-seq from whole organism (ENCLB480RMX)

description:
https://www.encodeproject.org/experiments/ENCSR146KCR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR146KCR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR150LOC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB480RMX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: not collected

value: L2 larva

value: 28.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS115AUN at ENCODE; https://www.encodeproject.org/ENCBS115AUN/


title: Control ChIP-seq from whole organism (ENCLB632BIT)

description:
https://www.encodeproject.org/experiments/ENCSR240NKC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR240NKC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB632BIT
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex mixed stage (embryo) insertion targeting C. elegans pha-4

value: whole organism

value: pooled male and female

value: mixed stage (embryonic)

value: CGC

value: ENCBS354QKI at ENCODE; https://www.encodeproject.org/ENCBS354QKI/


title: TF ChIP-seq from whole organism (ENCLB162BTL)

description:
https://www.encodeproject.org/experiments/ENCSR393AKW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Myb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR393AKW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR626UBE
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB162BTL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Myb

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Myb

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS372VWS at ENCODE; https://www.encodeproject.org/ENCBS372VWS/


title: Control ChIP-seq from whole organism (ENCLB406LNC)

description:
https://www.encodeproject.org/experiments/ENCSR224FXO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR224FXO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB406LNC
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L3 larva insertion targeting C. elegans mdl-1

value: whole organisms

value: not applicable

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS846GPT at ENCODE; https://www.encodeproject.org/ENCBS846GPT/


title: Control ChIP-seq from whole organism (ENCLB743AVV)

description:
https://www.encodeproject.org/experiments/ENCSR224FXO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR224FXO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB743AVV
size range: 150-350

value: whole organism

value: pooled male and female

value: ENCBS123HSJ at ENCODE; https://www.encodeproject.org/ENCBS123HSJ/


title: TF ChIP-seq from whole organism (ENCLB102UBH)

description:
https://www.encodeproject.org/experiments/ENCSR304RME/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in late embryonic worms.
experiment encode accession: ENCSR304RME
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR430JDM
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB102UBH
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex late embryo insertion targeting C. elegans pha-4

value: late embryonic

value: CGC

value: ENCBS458DLR at ENCODE; https://www.encodeproject.org/ENCBS458DLR/


title: Control ChIP-seq from whole organism (ENCLB424KRF)

description:
https://www.encodeproject.org/experiments/ENCSR562KLY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8089-eGFP fusion proteins.
experiment encode accession: ENCSR562KLY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB424KRF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8089-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG8089

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8089

value: embryonic

value: ENCBS687KYM at ENCODE; https://www.encodeproject.org/ENCBS687KYM/


title: Control ChIP-seq from whole organism (ENCLB970GBH)

description:
https://www.encodeproject.org/experiments/ENCSR149QCW/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR149QCW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB970GBH
size range: 150-350

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L3 larva insertion targeting C. elegans elt-3

value: ENCBS883WJB at ENCODE; https://www.encodeproject.org/ENCBS883WJB/


title: TF ChIP-seq from whole organism (ENCLB065YYC)

description:
https://www.encodeproject.org/experiments/ENCSR643MOM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing odd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR643MOM
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR257AYE
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB065YYC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain odd-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster odd

value: odd

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to odd

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS111BKN at ENCODE; https://www.encodeproject.org/ENCBS111BKN/


title: TF ChIP-seq from whole organism (ENCLB864RGC)

description:
https://www.encodeproject.org/experiments/ENCSR641KZS/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(spl)m5-eGFP fusion proteins.
experiment encode accession: ENCSR641KZS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR158HVZ
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB864RGC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m5-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster E(spl)m5-HLH

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m5

value: 0-12 hour

value: ENCBS305DSE at ENCODE; https://www.encodeproject.org/ENCBS305DSE/