title: TF ChIP-seq from whole organism (ENCLB917VJO)

description:
https://www.encodeproject.org/experiments/ENCSR442XYW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MADF-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR442XYW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR433UJZ
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB917VJO
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MADF-2

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS655ZDX at ENCODE; https://www.encodeproject.org/ENCBS655ZDX/


title: Control ChIP-seq from whole organism (ENCLB815LSS)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR746QSR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9797-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR746QSR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB815LSS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG9797-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster M1BP

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9797

tag: Sex

value: pooled male and female

tag: dev stage

value: embryonic

tag: age

value: 0-24 hour

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS951KVL at ENCODE; https://www.encodeproject.org/ENCBS951KVL/


title: Control ChIP-seq from whole organism (ENCLB394TNI)

description:
https://www.encodeproject.org/experiments/ENCSR615VYC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG6808-eGFP fusion proteins.
experiment encode accession: ENCSR615VYC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB394TNI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6808-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster CG6808

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6808

value: prepupa

value: 24 day

value: ENCBS062ZHJ at ENCODE; https://www.encodeproject.org/ENCBS062ZHJ/


title: Control ChIP-seq from whole organism (ENCLB309BGF)

description:
https://www.encodeproject.org/experiments/ENCSR342HXN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1620-eGFP fusion proteins.
experiment encode accession: ENCSR342HXN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB309BGF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1620-GFP female adult insertion targeting D. melanogaster CG1620

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1620

value: female

value: adult

value: unknown

value: ENCBS703PWC at ENCODE; https://www.encodeproject.org/ENCBS703PWC/


title: TF ChIP-seq from whole organism (ENCLB597SPA)

description:
https://www.encodeproject.org/experiments/ENCSR615RMC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing D19B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR615RMC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR499HRQ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB597SPA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain D19B-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster D19B

tag: antibody

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D19B

value: ENCBS691WQY at ENCODE; https://www.encodeproject.org/ENCBS691WQY/


title: Control ChIP-seq from whole organism (ENCLB023SIS)

description:
https://www.encodeproject.org/experiments/ENCSR081PIH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hr38-eGFP fusion proteins.
experiment encode accession: ENCSR081PIH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB023SIS
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Hr38-GFP mixed sex prepupa (48 hours) at white prepupa stage insertion targeting D. melanogaster Hr38

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr38

value: pooled male and female

value: 48 hour

value: Kevin White, UChicago

tag: fly synchronization stage

value: white prepupa

value: ENCBS203YKC at ENCODE; https://www.encodeproject.org/ENCBS203YKC/


title: TF ChIP-seq from whole organism (ENCLB925GOY)

description:
https://www.encodeproject.org/experiments/ENCSR304WWX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L2 larva worms.
experiment encode accession: ENCSR304WWX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR370QTM
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB925GOY
size range: 150-350

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

extract_protocol: not provided

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS305QBU at ENCODE; https://www.encodeproject.org/ENCBS305QBU/


title: TF ChIP-seq from whole organism (ENCLB583PMR)

description:
https://www.encodeproject.org/experiments/ENCSR340CQF/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15073-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR340CQF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR020AAP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB583PMR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15073-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG15073

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15073

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS135LHL at ENCODE; https://www.encodeproject.org/ENCBS135LHL/


title: TF ChIP-seq from whole organism (ENCLB131CJV)

description:
https://www.encodeproject.org/experiments/ENCSR304JRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-blmp-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR304JRJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563WCK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB131CJV
size range: 150-350

source_name: Caenorhabditis elegans strain OP109 (unc-119(ed3) III; wgIs109) mixed sex mixed stage (embryo) insertion targeting C. elegans blmp-1

value: whole organism

value: whole organisms

value: not applicable

value: mixed stage (embryonic)

value: unknown

value: ENCBS408YCA at ENCODE; https://www.encodeproject.org/ENCBS408YCA/


title: Control ChIP-seq from whole organism (ENCLB940LKQ)

description:
https://www.encodeproject.org/experiments/ENCSR733CQH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10209-eGFP fusion proteins.
experiment encode accession: ENCSR733CQH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB940LKQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10209-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10209

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10209

value: pooled male and female

value: Kevin White, UChicago

value: ENCBS368NZZ at ENCODE; https://www.encodeproject.org/ENCBS368NZZ/


title: Control ChIP-seq from whole organism (ENCLB335YIY)

description:
https://www.encodeproject.org/experiments/ENCSR735CQR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8145-eGFP fusion proteins.
experiment encode accession: ENCSR735CQR
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB335YIY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8145-GFP mixed sex embryo (0-10 hours) insertion targeting D. melanogaster nom

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8145

value: 0-10 hour

value: ENCBS929BAS at ENCODE; https://www.encodeproject.org/ENCBS929BAS/


title: TF ChIP-seq from whole organism (ENCLB705DHE)

description:
https://www.encodeproject.org/experiments/ENCSR205ZNH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L4 larva worms.
experiment encode accession: ENCSR205ZNH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966NHU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB705DHE
size range: 150-350

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L4 larva insertion targeting C. elegans lin-15B

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS626QLJ at ENCODE; https://www.encodeproject.org/ENCBS626QLJ/


title: Control ChIP-seq from whole organism (ENCLB950QPN)

description:
https://www.encodeproject.org/experiments/ENCSR937YBQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HND-1-eGFP fusion proteins.
experiment encode accession: ENCSR937YBQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB950QPN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP573 (unc-119(tm4063) III; wgIs573) mixed sex early embryo 1.5 hours post synchronization using egg bleaching insertion targeting C. elegans hnd-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HND-1

value: early embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: egg bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS032PQC at ENCODE; https://www.encodeproject.org/ENCBS032PQC/


title: Control ChIP-seq from whole organism (ENCLB486ISW)

description:
https://www.encodeproject.org/experiments/ENCSR131UVY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR131UVY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB486ISW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L4 larva insertion targeting C. elegans ceh-82

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: unknown

value: Michael Snyder

value: ENCBS223TLO at ENCODE; https://www.encodeproject.org/ENCBS223TLO/


title: TF ChIP-seq from whole organism (ENCLB579ZTW)

description:
https://www.encodeproject.org/experiments/ENCSR339ZDU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dpn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339ZDU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR171XET
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB579ZTW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dpn-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster dpn

value: dpn

value: D. mel line contraining an intronic eGFP exon to create a dpn-GFP fusion gene

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS021PJU at ENCODE; https://www.encodeproject.org/ENCBS021PJU/


title: Control ChIP-seq from whole organism (ENCLB054IKX)

description:
https://www.encodeproject.org/experiments/ENCSR646YCH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-36-eGFP fusion proteins.
experiment encode accession: ENCSR646YCH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB054IKX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP620 (unc-119(tm4063) III; wgIs620) mixed sex early embryo 2 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-36

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-36

value: early embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS367AJI at ENCODE; https://www.encodeproject.org/ENCBS367AJI/


title: TF ChIP-seq from whole organism (ENCLB567ARQ)

description:
https://www.encodeproject.org/experiments/ENCSR917WWZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sry-beta-eGFP fusion proteins.
experiment encode accession: ENCSR917WWZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR916PCV
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB567ARQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sry-beta-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster Sry-beta

value: Sry-β

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sry-beta

value: pooled male and female

value: 0-12 hour

value: Kevin White

value: ENCBS836RBW at ENCODE; https://www.encodeproject.org/ENCBS836RBW/


title: Control ChIP-seq from whole organism (ENCLB903JDI)

description:
https://www.encodeproject.org/experiments/ENCSR734WSG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR734WSG
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB903JDI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain usp-GFP mixed sex wandering third instar larva whole organism stably expressing C-terminal eGFP-tagged usp

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to usp

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: ENCBS946PYN at ENCODE; https://www.encodeproject.org/ENCBS946PYN/


title: Control ChIP-seq from whole organism (ENCLB861MSP)

description:
https://www.encodeproject.org/experiments/ENCSR939PJG/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y53C12C.1-eGFP fusion proteins.
experiment encode accession: ENCSR939PJG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB861MSP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans eyg-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y53C12C.1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: hour

value: ENCBS507XVO at ENCODE; https://www.encodeproject.org/ENCBS507XVO/


title: Control ChIP-seq from whole organism (ENCLB912BUW)

description:
https://www.encodeproject.org/experiments/ENCSR754PHW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-9-eGFP fusion proteins.
experiment encode accession: ENCSR754PHW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB912BUW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP202 (unc-119(ed3) III; wgIs202) mixed sex late embryo 4.75 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-9

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-9

value: Valerie Reinke

value: egg bleaching

value: ENCBS543HCN at ENCODE; https://www.encodeproject.org/ENCBS543HCN/


title: Control ChIP-seq from whole organism (ENCLB794QVR)

description:
https://www.encodeproject.org/experiments/ENCSR734MCC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m-beta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR734MCC
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB794QVR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m-beta-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(spl)mbeta-HLH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m-beta

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS879IDF at ENCODE; https://www.encodeproject.org/ENCBS879IDF/


title: Control ChIP-seq from whole organism (ENCLB710VNJ)

description:
https://www.encodeproject.org/experiments/ENCSR939ISJ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing TBX-7-eGFP fusion proteins.
experiment encode accession: ENCSR939ISJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB710VNJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP311 hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans tbx-7

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-7

value: hermaphrodite

value: unknown

value: ENCBS598SPF at ENCODE; https://www.encodeproject.org/ENCBS598SPF/


title: Control ChIP-seq from whole organism (ENCLB119XFB)

description:
https://www.encodeproject.org/experiments/ENCSR931UUY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing DMD-4-eGFP fusion proteins.
experiment encode accession: ENCSR931UUY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB119XFB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP418 (unc-119(tm4063) III; wgIs418) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans dmd-4

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DMD-4

value: late embryonic

value: Valerie Reinke, Yale

value: hour

value: ENCBS058UKN at ENCODE; https://www.encodeproject.org/ENCBS058UKN/


title: TF ChIP-seq from whole organism (ENCLB416MRA)

description:
https://www.encodeproject.org/experiments/ENCSR432MSI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR432MSI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR754PHW
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB416MRA
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-9

value: Valerie Reinke

value: egg bleaching

value: ENCBS373XZJ at ENCODE; https://www.encodeproject.org/ENCBS373XZJ/


title: TF ChIP-seq from whole organism (ENCLB547KEV)

description:
https://www.encodeproject.org/experiments/ENCSR418NNG/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hey-eGFP fusion proteins.
experiment encode accession: ENCSR418NNG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR254VFL
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB547KEV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hey mixed sex embryo (6-24 hours) insertion targeting D. melanogaster Hey

value: Hey

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hey

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS036UNW at ENCODE; https://www.encodeproject.org/ENCBS036UNW/


title: TF ChIP-seq from whole organism (ENCLB827MCF)

description:
https://www.encodeproject.org/experiments/ENCSR339IEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339IEZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR459PGV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB827MCF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pdp1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Pdp1

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pdp1

value: 0-24 hour

value: ENCBS937XLY at ENCODE; https://www.encodeproject.org/ENCBS937XLY/


title: TF ChIP-seq from whole organism (ENCLB395SFS)

description:
https://www.encodeproject.org/experiments/ENCSR205ZNH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L4 larva worms.
experiment encode accession: ENCSR205ZNH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966NHU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB395SFS
size range: 150-350

value: not applicable

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS026KKQ at ENCODE; https://www.encodeproject.org/ENCBS026KKQ/


title: TF ChIP-seq from whole organism (ENCLB416TBC)

description:
https://www.encodeproject.org/experiments/ENCSR078TMF/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ovo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR078TMF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR348OGP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB416TBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ovo-GFP female adult insertion targeting D. melanogaster ovo

value: ovo

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ovo

value: female

value: adult

value: ENCBS827ZTN at ENCODE; https://www.encodeproject.org/ENCBS827ZTN/


title: Control ChIP-seq from whole organism (ENCLB664SPD)

description:
https://www.encodeproject.org/experiments/ENCSR029WBT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR029WBT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB664SPD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL503 (unc-119(ed3) III; vrIs110 [pPIE-1::AMA-1:GFP:FLAG::AMA-1 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans ama-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AMA-1

value: pooled male and female

value: young adult

value: Michael Snyder

value: ENCBS505DAA at ENCODE; https://www.encodeproject.org/ENCBS505DAA/


title: TF ChIP-seq from whole organism (ENCLB727LUW)

description:
https://www.encodeproject.org/experiments/ENCSR917WWZ/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sry-beta-eGFP fusion proteins.
experiment encode accession: ENCSR917WWZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR916PCV
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB727LUW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Sry-β

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sry-beta

value: embryonic

value: 0-12 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS278XRT at ENCODE; https://www.encodeproject.org/ENCBS278XRT/


title: TF ChIP-seq from whole organism (ENCLB750XBC)

description:
https://www.encodeproject.org/experiments/ENCSR304JRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-blmp-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR304JRJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR563WCK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB750XBC
size range: 150-350

source_name: Caenorhabditis elegans strain OP109 (unc-119(ed3) III; wgIs109) mixed sex mixed stage (embryo) insertion targeting C. elegans blmp-1

value: not applicable

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS715IUI at ENCODE; https://www.encodeproject.org/ENCBS715IUI/


title: TF ChIP-seq from whole organism (ENCLB789CPA)

description:
https://www.encodeproject.org/experiments/ENCSR750IEF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-90-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR750IEF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR481GRU
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB789CPA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP484 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-90

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-90

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS827XCE at ENCODE; https://www.encodeproject.org/ENCBS827XCE/


title: TF ChIP-seq from whole organism (ENCLB877MZZ)

description:
https://www.encodeproject.org/experiments/ENCSR339IEZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339IEZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR459PGV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB877MZZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pdp1

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS017YFW at ENCODE; https://www.encodeproject.org/ENCBS017YFW/


title: TF ChIP-seq from whole organism (ENCLB986VBM)

description:
https://www.encodeproject.org/experiments/ENCSR339IEZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339IEZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR459PGV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB986VBM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Kevin White

value: ENCBS236PYS at ENCODE; https://www.encodeproject.org/ENCBS236PYS/


title: Control ChIP-seq from whole organism (ENCLB740VFD)

description:
https://www.encodeproject.org/experiments/ENCSR080CLA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing HmgD-eGFP fusion proteins.
experiment encode accession: ENCSR080CLA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB740VFD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HmgD-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster HmgD

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgD

value: ENCBS113GWC at ENCODE; https://www.encodeproject.org/ENCBS113GWC/


title: TF ChIP-seq from whole organism (ENCLB920VGO)

description:
https://www.encodeproject.org/experiments/ENCSR339ZDU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dpn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339ZDU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR171XET
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB920VGO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: dpn

value: D. mel line contraining an intronic eGFP exon to create a dpn-GFP fusion gene

value: Hugo Bellen

value: ENCBS569DRO at ENCODE; https://www.encodeproject.org/ENCBS569DRO/


title: TF ChIP-seq from whole organism (ENCLB686NVJ)

description:
https://www.encodeproject.org/experiments/ENCSR301GSP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-23 in L3 larva worms.
experiment encode accession: ENCSR301GSP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR389KDY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB686NVJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP43 (unc-119(ed3) III; wgIs43) mixed sex L3 larva insertion targeting C. elegans nhr-23

value: whole organism

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS011PJQ at ENCODE; https://www.encodeproject.org/ENCBS011PJQ/


title: Control ChIP-seq from whole organism (ENCLB463YDR)

description:
https://www.encodeproject.org/experiments/ENCSR131UVY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR131UVY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB463YDR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L4 larva insertion targeting C. elegans ceh-82

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: L4 larva

value: Michael Snyder

value: ENCBS494QNA at ENCODE; https://www.encodeproject.org/ENCBS494QNA/


title: Control ChIP-seq from whole organism (ENCLB765QAQ)

description:
https://www.encodeproject.org/experiments/ENCSR730QLJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG14711-eGFP fusion proteins.
experiment encode accession: ENCSR730QLJ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB765QAQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster female adult insertion targeting D. melanogaster CG14711

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14711

value: female

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS185SNO at ENCODE; https://www.encodeproject.org/ENCBS185SNO/


title: Control ChIP-seq from whole organism (ENCLB299EQP)

description:
https://www.encodeproject.org/experiments/ENCSR031AIO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR031AIO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB299EQP
size range: 150-350

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex L3 larva insertion targeting C. elegans ztf-11

value: whole organism

value: L3 larva

value: unknown

value: ENCBS333WXT at ENCODE; https://www.encodeproject.org/ENCBS333WXT/


title: TF ChIP-seq from whole organism (ENCLB816KWF)

description:
https://www.encodeproject.org/experiments/ENCSR427JJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RNT-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR427JJZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR948SUV
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB816KWF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP462 (unc-119(tm4063) III; wgIs462) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans rnt-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RNT-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS270ATE at ENCODE; https://www.encodeproject.org/ENCBS270ATE/


title: Control ChIP-seq from whole organism (ENCLB700DBC)

description:
https://www.encodeproject.org/experiments/ENCSR249WKC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing pnt-eGFP fusion proteins.
experiment encode accession: ENCSR249WKC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB700DBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pnt-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pnt

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a pnt-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Hugo Bellen

value: ENCBS622PWJ at ENCODE; https://www.encodeproject.org/ENCBS622PWJ/


title: TF ChIP-seq from whole organism (ENCLB449LXI)

description:
https://www.encodeproject.org/experiments/ENCSR418KGH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1663-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR418KGH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR370OIE
encode release date: 2022-11-28
lab: Kevin White, UChicago
library encode accession: ENCLB449LXI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex pupa (24 hours) insertion targeting D. melanogaster CG1663

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1663

value: pupa

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS077REJ at ENCODE; https://www.encodeproject.org/ENCBS077REJ/


title: TF ChIP-seq from whole organism (ENCLB653OZS)

description:
https://www.encodeproject.org/experiments/ENCSR301GSP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-23 in L3 larva worms.
experiment encode accession: ENCSR301GSP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR389KDY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB653OZS
size range: 150-350

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS414AJZ at ENCODE; https://www.encodeproject.org/ENCBS414AJZ/


title: Control ChIP-seq from whole organism (ENCLB681CXG)

description:
https://www.encodeproject.org/experiments/ENCSR247VJD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing btn-eGFP fusion proteins.
experiment encode accession: ENCSR247VJD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB681CXG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain btn-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster btn

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to btn

value: pooled male and female

value: embryonic

value: 0-14 hour

value: ENCBS491WQK at ENCODE; https://www.encodeproject.org/ENCBS491WQK/


title: Control ChIP-seq from whole organism (ENCLB500DVO)

description:
https://www.encodeproject.org/experiments/ENCSR729AWQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Phol-eGFP fusion proteins.
experiment encode accession: ENCSR729AWQ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB500DVO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-16 hours) insertion targeting D. melanogaster phol

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Phol

value: 0-16 hour

value: ENCBS914XIY at ENCODE; https://www.encodeproject.org/ENCBS914XIY/


title: Control ChIP-seq from whole organism (ENCLB723UGN)

description:
https://www.encodeproject.org/experiments/ENCSR301FPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR301FPJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB723UGN
size range: 150-350

source_name: Caenorhabditis elegans strain OP332 (unc-119(tm4063) III; wgIs332) mixed sex L4 larva insertion targeting C. elegans ztf-7

value: L4 larva

value: ENCBS496NHO at ENCODE; https://www.encodeproject.org/ENCBS496NHO/


title: Control ChIP-seq from whole organism (ENCLB451JRG)

description:
https://www.encodeproject.org/experiments/ENCSR031AIO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR031AIO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB451JRG
size range: 150-350

value: whole organisms

value: L3 larva

value: ENCBS035UVA at ENCODE; https://www.encodeproject.org/ENCBS035UVA/


title: Control ChIP-seq from whole organism (ENCLB906AHV)

description:
https://www.encodeproject.org/experiments/ENCSR301FPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR301FPJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB906AHV
size range: 150-350

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS796AEM at ENCODE; https://www.encodeproject.org/ENCBS796AEM/


title: TF ChIP-seq from whole organism (ENCLB232DWW)

description:
https://www.encodeproject.org/experiments/ENCSR247CPK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1792-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR247CPK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR801NWY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB232DWW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1792-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG1792

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1792

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS777OTE at ENCODE; https://www.encodeproject.org/ENCBS777OTE/


title: TF ChIP-seq from whole organism (ENCLB220VGX)

description:
https://www.encodeproject.org/experiments/ENCSR418NNG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hey-eGFP fusion proteins.
experiment encode accession: ENCSR418NNG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR254VFL
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB220VGX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hey mixed sex embryo (6-24 hours) insertion targeting D. melanogaster Hey

value: Hey

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hey

value: embryonic

value: ENCBS597PXO at ENCODE; https://www.encodeproject.org/ENCBS597PXO/


title: Control ChIP-seq from whole organism (ENCLB154GUX)

description:
https://www.encodeproject.org/experiments/ENCSR626XZR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MES-4-eGFP fusion proteins.
experiment encode accession: ENCSR626XZR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB154GUX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain RW10325 hermaphrodite young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans mes-4

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MES-4

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS786WZE at ENCODE; https://www.encodeproject.org/ENCBS786WZE/


title: TF ChIP-seq from whole organism (ENCLB039KQR)

description:
https://www.encodeproject.org/experiments/ENCSR748QMA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748QMA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR701DBM
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB039KQR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP63 hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans hlh-8

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-8

value: late embryonic

value: unknown

value: egg bleaching

value: ENCBS006KLI at ENCODE; https://www.encodeproject.org/ENCBS006KLI/


title: TF ChIP-seq from whole organism (ENCLB574RLT)

description:
https://www.encodeproject.org/experiments/ENCSR078TMF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ovo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR078TMF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR348OGP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB574RLT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ovo-GFP female adult insertion targeting D. melanogaster ovo

value: ovo

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ovo

value: female

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS335TJT at ENCODE; https://www.encodeproject.org/ENCBS335TJT/


title: TF ChIP-seq from whole organism (ENCLB166SRW)

description:
https://www.encodeproject.org/experiments/ENCSR613JPW/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing snoo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR613JPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR489LXY
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB166SRW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain snoo-MiMIC mixed sex pupa insertion targeting D. melanogaster Snoo

value: Snoo

value: whole organisms

value: D. mel line contraining an intronic eGFP exon to create a snoo-GFP fusion gene

value: pooled male and female

value: pupa

value: Hugo Bellen

value: ENCBS642VUN at ENCODE; https://www.encodeproject.org/ENCBS642VUN/


title: Control ChIP-seq from whole organism (ENCLB587LIA)

description:
https://www.encodeproject.org/experiments/ENCSR029WBT/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR029WBT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB587LIA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL503 (unc-119(ed3) III; vrIs110 [pPIE-1::AMA-1:GFP:FLAG::AMA-1 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans ama-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AMA-1

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS946NYK at ENCODE; https://www.encodeproject.org/ENCBS946NYK/


title: TF ChIP-seq from whole organism (ENCLB806JQB)

description:
https://www.encodeproject.org/experiments/ENCSR750IEF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-90-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR750IEF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR481GRU
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB806JQB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP484 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-90

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-90

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS567BGQ at ENCODE; https://www.encodeproject.org/ENCBS567BGQ/


title: TF ChIP-seq from whole organism (ENCLB737GKE)

description:
https://www.encodeproject.org/experiments/ENCSR418NNG/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hey-eGFP fusion proteins.
experiment encode accession: ENCSR418NNG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR254VFL
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB737GKE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Hey

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hey

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS132AUT at ENCODE; https://www.encodeproject.org/ENCBS132AUT/


title: Control ChIP-seq from whole organism (ENCLB435WKL)

description:
https://www.encodeproject.org/experiments/ENCSR074VTY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(var)3-9-eGFP fusion proteins.
experiment encode accession: ENCSR074VTY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB435WKL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(var)3-9-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(var)3-9

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(var)3-9

value: 0-24 hour

value: ENCBS725LVZ at ENCODE; https://www.encodeproject.org/ENCBS725LVZ/


title: Control ChIP-seq from whole organism (ENCLB932PNG)

description:
https://www.encodeproject.org/experiments/ENCSR079ERM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing slou-eGFP fusion proteins.
experiment encode accession: ENCSR079ERM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB932PNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain slou-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster slou

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to slou

value: ENCBS520BFB at ENCODE; https://www.encodeproject.org/ENCBS520BFB/


title: Control ChIP-seq from whole organism (ENCLB721FXN)

description:
https://www.encodeproject.org/experiments/ENCSR301AAS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR301AAS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB721FXN
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L1 larva insertion targeting C. elegans nhr-11

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS045DXV at ENCODE; https://www.encodeproject.org/ENCBS045DXV/


title: TF ChIP-seq from whole organism (ENCLB717HNT)

description:
https://www.encodeproject.org/experiments/ENCSR418KGH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1663-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR418KGH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR370OIE
encode release date: 2022-11-28
lab: Kevin White, UChicago
library encode accession: ENCLB717HNT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1663

value: pooled male and female

value: pupa

value: 24 hour

value: ENCBS200MYQ at ENCODE; https://www.encodeproject.org/ENCBS200MYQ/


title: TF ChIP-seq from whole organism (ENCLB367MZH)

description:
https://www.encodeproject.org/experiments/ENCSR609JDR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR609JDR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR331RGH
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB367MZH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain abd-A mixed sex embryo (4-24 hours) insertion targeting D. melanogaster abd-A

value: abd-A

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to abd-A

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS444OYB at ENCODE; https://www.encodeproject.org/ENCBS444OYB/


title: TF ChIP-seq from whole organism (ENCLB942GRV)

description:
https://www.encodeproject.org/experiments/ENCSR748QMA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748QMA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR701DBM
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB942GRV
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-8

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS814OXV at ENCODE; https://www.encodeproject.org/ENCBS814OXV/


title: Control ChIP-seq from whole organism (ENCLB041HVE)

description:
https://www.encodeproject.org/experiments/ENCSR184FJG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins.
experiment encode accession: ENCSR184FJG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB041HVE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain foxo-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster foxo

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to foxo

value: pooled male and female

value: wandering third instar larva

value: ENCBS704VDT at ENCODE; https://www.encodeproject.org/ENCBS704VDT/


title: Control ChIP-seq from whole organism (ENCLB673IUQ)

description:
https://www.encodeproject.org/experiments/ENCSR246AVX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins.
experiment encode accession: ENCSR246AVX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB673IUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster psq

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: Kevin White, UChicago

value: Kevin White

value: ENCBS369AKQ at ENCODE; https://www.encodeproject.org/ENCBS369AKQ/


title: TF ChIP-seq from whole organism (ENCLB230KJY)

description:
https://www.encodeproject.org/experiments/ENCSR299IKN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-alr-1 in L2 larva worms.
experiment encode accession: ENCSR299IKN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR633VXV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB230KJY
size range: 150-350

source_name: Caenorhabditis elegans strain OP200 (unc-119(ed3) III; wgIs200) mixed sex L2 larva insertion targeting C. elegans alr-1

value: whole organism

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS403UXF at ENCODE; https://www.encodeproject.org/ENCBS403UXF/


title: Control ChIP-seq from whole organism (ENCLB555BBG)

description:
https://www.encodeproject.org/experiments/ENCSR748EUE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C04F5.9-eGFP fusion proteins.
experiment encode accession: ENCSR748EUE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB555BBG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP525 (unc-119(tm4063) III; wgIs525) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans C04F5.9

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C04F5.9

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS010TWP at ENCODE; https://www.encodeproject.org/ENCBS010TWP/


title: Control ChIP-seq from whole organism (ENCLB643EAE)

description:
https://www.encodeproject.org/experiments/ENCSR628JNH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing UNC-120-eGFP fusion proteins.
experiment encode accession: ENCSR628JNH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB643EAE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP659 (unc-119(tm4063) III; wgIs659) mixed sex mixed stage (embryo) 3 hours post synchronization using egg bleaching insertion targeting C. elegans unc-120

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-120

value: pooled male and female

value: mixed stage (embryonic)

value: egg bleaching

value: ENCBS661APN at ENCODE; https://www.encodeproject.org/ENCBS661APN/


title: TF ChIP-seq from whole organism (ENCLB502JVW)

description:
https://www.encodeproject.org/experiments/ENCSR299IKN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-alr-1 in L2 larva worms.
experiment encode accession: ENCSR299IKN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR633VXV
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB502JVW
size range: 150-350

value: whole organism

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS953ZYB at ENCODE; https://www.encodeproject.org/ENCBS953ZYB/


title: TF ChIP-seq from whole organism (ENCLB673RXG)

description:
https://www.encodeproject.org/experiments/ENCSR613JPW/
***************
biological replicate number: 6
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing snoo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR613JPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR489LXY
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB673RXG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Snoo

value: D. mel line contraining an intronic eGFP exon to create a snoo-GFP fusion gene

value: pupa

value: unknown

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS387NHE at ENCODE; https://www.encodeproject.org/ENCBS387NHE/


title: TF ChIP-seq from whole organism (ENCLB782SND)

description:
https://www.encodeproject.org/experiments/ENCSR247CPK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1792-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR247CPK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR801NWY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB782SND
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1792-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG1792

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1792

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS490YAJ at ENCODE; https://www.encodeproject.org/ENCBS490YAJ/


title: Control ChIP-seq from whole organism (ENCLB105UXW)

description:
https://www.encodeproject.org/experiments/ENCSR916PCV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sry-beta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR916PCV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB105UXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sry-beta-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster Sry-beta

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sry-beta

value: pooled male and female

value: 0-12 hour

value: ENCBS714VQG at ENCODE; https://www.encodeproject.org/ENCBS714VQG/


title: Control ChIP-seq from whole organism (ENCLB264PPV)

description:
https://www.encodeproject.org/experiments/ENCSR301AAS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR301AAS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB264PPV
size range: 150-350

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS225WYP at ENCODE; https://www.encodeproject.org/ENCBS225WYP/


title: Control ChIP-seq from whole organism (ENCLB508IPO)

description:
https://www.encodeproject.org/experiments/ENCSR626CIE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-32-eGFP fusion proteins.
experiment encode accession: ENCSR626CIE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB508IPO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP516 (unc-119(tm4063) III; wgIs516) hermaphrodite L4 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-32

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-32

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS748FZG at ENCODE; https://www.encodeproject.org/ENCBS748FZG/


title: Control ChIP-seq from whole organism (ENCLB535EVA)

description:
https://www.encodeproject.org/experiments/ENCSR745QHO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SOX-4-eGFP fusion proteins.
experiment encode accession: ENCSR745QHO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB535EVA
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Caenorhabditis elegans strain OP517 (unc-119(tm4063) III; wgIs517) mixed sex late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans sox-4

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SOX-4

value: late embryonic

value: egg bleaching

value: ENCBS389BGW at ENCODE; https://www.encodeproject.org/ENCBS389BGW/


title: TF ChIP-seq from whole organism (ENCLB316LYI)

description:
https://www.encodeproject.org/experiments/ENCSR245UCO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing GATAd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR245UCO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR854PLB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB316LYI
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain GATAd-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster GATAd

value: GATAd

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to GATAd

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS138OWX at ENCODE; https://www.encodeproject.org/ENCBS138OWX/


title: Control ChIP-seq from whole organism (ENCLB628QKX)

description:
https://www.encodeproject.org/experiments/ENCSR201EHF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR201EHF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB628QKX
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex mixed stage (embryo) insertion targeting C. elegans snpc-4

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS440BHS at ENCODE; https://www.encodeproject.org/ENCBS440BHS/


title: Control ChIP-seq from whole organism (ENCLB460WNN)

description:
https://www.encodeproject.org/experiments/ENCSR420ZTI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F10B5.3-eGFP fusion proteins.
experiment encode accession: ENCSR420ZTI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB460WNN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP529 (unc-119(tm4063) III; wgIs529) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F10B5.3

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F10B5.3

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS540BKI at ENCODE; https://www.encodeproject.org/ENCBS540BKI/


title: Control ChIP-seq from whole organism (ENCLB192NBU)

description:
https://www.encodeproject.org/experiments/ENCSR185XQI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Neu2-eGFP fusion proteins.
experiment encode accession: ENCSR185XQI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB192NBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Neu2-GFP mixed sex embryo (2-4 hours) insertion targeting D. melanogaster Neu2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Neu2

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS572XOX at ENCODE; https://www.encodeproject.org/ENCBS572XOX/


title: TF ChIP-seq from whole organism (ENCLB351UIG)

description:
https://www.encodeproject.org/experiments/ENCSR608VFH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG15011-eGFP fusion proteins.
experiment encode accession: ENCSR608VFH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR490YPO
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB351UIG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15011-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG15011

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15011

value: 0-24 hour

value: ENCBS346HAA at ENCODE; https://www.encodeproject.org/ENCBS346HAA/


title: TF ChIP-seq from whole organism (ENCLB418GNW)

description:
https://www.encodeproject.org/experiments/ENCSR620JQF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-20-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR620JQF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966WUX
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB418GNW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP515 (unc-119(tm4063) III; wgIs515) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-20

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-20

value: hermaphrodite

value: L1 larva

value: unknown

value: ENCBS466JDL at ENCODE; https://www.encodeproject.org/ENCBS466JDL/


title: TF ChIP-seq from whole organism (ENCLB828RNL)

description:
https://www.encodeproject.org/experiments/ENCSR620JQF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-20-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR620JQF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966WUX
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB828RNL
fragmentation methods: sonication (generic microtip)

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS669OGZ at ENCODE; https://www.encodeproject.org/ENCBS669OGZ/


title: Control ChIP-seq from whole organism (ENCLB445EPK)

description:
https://www.encodeproject.org/experiments/ENCSR616DAV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SPR-1-eGFP fusion proteins.
experiment encode accession: ENCSR616DAV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB445EPK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP521 (unc-119(tm4063) III; wgIs521) hermaphrodite L4 larva 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans spr-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SPR-1

value: L4 larva

value: ENCBS265JHC at ENCODE; https://www.encodeproject.org/ENCBS265JHC/


title: TF ChIP-seq from whole organism (ENCLB565PKL)

description:
https://www.encodeproject.org/experiments/ENCSR608VFH/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG15011-eGFP fusion proteins.
experiment encode accession: ENCSR608VFH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR490YPO
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB565PKL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15011

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS870CVH at ENCODE; https://www.encodeproject.org/ENCBS870CVH/


title: TF ChIP-seq from whole organism (ENCLB589GMA)

description:
https://www.encodeproject.org/experiments/ENCSR609JDR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR609JDR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR331RGH
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB589GMA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain abd-A mixed sex embryo (4-24 hours) insertion targeting D. melanogaster abd-A

value: abd-A

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to abd-A

value: ENCBS903ZIQ at ENCODE; https://www.encodeproject.org/ENCBS903ZIQ/


title: Control ChIP-seq from whole organism (ENCLB655ZSS)

description:
https://www.encodeproject.org/experiments/ENCSR739RAY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing WAGO-9-eGFP fusion proteins.
experiment encode accession: ENCSR739RAY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB655ZSS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL557 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hrde-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to WAGO-9

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS192YXX at ENCODE; https://www.encodeproject.org/ENCBS192YXX/


title: Control ChIP-seq from whole organism (ENCLB164WJN)

description:
https://www.encodeproject.org/experiments/ENCSR918WXD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing UNC-42-eGFP fusion proteins.
experiment encode accession: ENCSR918WXD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB164WJN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP173 hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans unc-42

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-42

value: late embryonic

value: egg bleaching

value: ENCBS522OWB at ENCODE; https://www.encodeproject.org/ENCBS522OWB/


title: Control ChIP-seq from whole organism (ENCLB055UOM)

description:
https://www.encodeproject.org/experiments/ENCSR201EHF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR201EHF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB055UOM
size range: 150-350

value: whole organisms

value: not applicable

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS112WGD at ENCODE; https://www.encodeproject.org/ENCBS112WGD/


title: TF ChIP-seq from whole organism (ENCLB249CTX)

description:
https://www.encodeproject.org/experiments/ENCSR200QCO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against PQM-1 in L1 larva worms.
experiment encode accession: ENCSR200QCO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR185LPO
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB249CTX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L1 larva insertion targeting C. elegans pqm-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: L1 larva

value: unknown

value: Michael Snyder

value: ENCBS512QIU at ENCODE; https://www.encodeproject.org/ENCBS512QIU/


title: TF ChIP-seq from whole organism (ENCLB363HSV)

description:
https://www.encodeproject.org/experiments/ENCSR172KOI/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing kay-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR172KOI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR685RPG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB363HSV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain kay-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster kay

value: kay

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to kay

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS255JFW at ENCODE; https://www.encodeproject.org/ENCBS255JFW/


title: Control ChIP-seq from whole organism (ENCLB312EPZ)

description:
https://www.encodeproject.org/experiments/ENCSR607FIB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox100B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR607FIB
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB312EPZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox100B-GFP mixed sex embryo (6-16 hours) insertion targeting D. melanogaster Sox100B

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox100B

value: pooled male and female

value: ENCBS843CKT at ENCODE; https://www.encodeproject.org/ENCBS843CKT/


title: TF ChIP-seq from whole organism (ENCLB506QBD)

description:
https://www.encodeproject.org/experiments/ENCSR609JDR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR609JDR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR331RGH
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB506QBD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: abd-A

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to abd-A

value: ENCBS759YUY at ENCODE; https://www.encodeproject.org/ENCBS759YUY/


title: Control ChIP-seq from whole organism (ENCLB127LOL)

description:
https://www.encodeproject.org/experiments/ENCSR171XET/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dpn-eGFP fusion proteins.
experiment encode accession: ENCSR171XET
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB127LOL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dpn-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster dpn

value: D. mel line contraining an intronic eGFP exon to create a dpn-GFP fusion gene

value: Hugo Bellen

value: ENCBS196QZQ at ENCODE; https://www.encodeproject.org/ENCBS196QZQ/


title: TF ChIP-seq from whole organism (ENCLB500LRS)

description:
https://www.encodeproject.org/experiments/ENCSR917KLO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C04F5.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR917KLO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR748EUE
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB500LRS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP525 (unc-119(tm4063) III; wgIs525) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans C04F5.9

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C04F5.9

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS973TTA at ENCODE; https://www.encodeproject.org/ENCBS973TTA/


title: Control ChIP-seq from whole organism (ENCLB758DHO)

description:
https://www.encodeproject.org/experiments/ENCSR610FIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR610FIQ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB758DHO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Fer2 embryo (6-24 hours) insertion targeting D. melanogaster Fer2

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer2

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS970XAF at ENCODE; https://www.encodeproject.org/ENCBS970XAF/


title: TF ChIP-seq from whole organism (ENCLB373TQC)

description:
https://www.encodeproject.org/experiments/ENCSR239YEX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr83-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR239YEX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR227MZM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB373TQC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-300

source_name: Drosophila melanogaster strain Hr83-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Hr83

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr83

value: pooled male and female

value: wandering third instar larva

value: ENCBS158KGL at ENCODE; https://www.encodeproject.org/ENCBS158KGL/


title: TF ChIP-seq from whole organism (ENCLB132JLV)

description:
https://www.encodeproject.org/experiments/ENCSR064GFC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing tin-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR064GFC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR996JOD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB132JLV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Drosophila melanogaster strain tin-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster tin

value: tin

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tin

value: 0-16 hour

value: ENCBS814JRW at ENCODE; https://www.encodeproject.org/ENCBS814JRW/


title: TF ChIP-seq from whole organism (ENCLB871HCL)

description:
https://www.encodeproject.org/experiments/ENCSR130CZH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing EFL-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR130CZH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR503YWW
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB871HCL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL479 hermaphrodite young adult insertion targeting C. elegans efl-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-1

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS768GPU at ENCODE; https://www.encodeproject.org/ENCBS768GPU/


title: TF ChIP-seq from whole organism (ENCLB711AMJ)

description:
https://www.encodeproject.org/experiments/ENCSR168XBW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR168XBW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR923VFC
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB711AMJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2120-GFP embryo (18-24 hours) insertion targeting D. melanogaster CG2120

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2120

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS951TFJ at ENCODE; https://www.encodeproject.org/ENCBS951TFJ/


title: TF ChIP-seq from whole organism (ENCLB560XRJ)

description:
https://www.encodeproject.org/experiments/ENCSR200QCO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against PQM-1 in L1 larva worms.
experiment encode accession: ENCSR200QCO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR185LPO
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB560XRJ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS962FZC at ENCODE; https://www.encodeproject.org/ENCBS962FZC/


title: TF ChIP-seq from whole organism (ENCLB414BFL)

description:
https://www.encodeproject.org/experiments/ENCSR608VFH/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG15011-eGFP fusion proteins.
experiment encode accession: ENCSR608VFH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR490YPO
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB414BFL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15011

value: 0-24 hour

value: ENCBS968NZG at ENCODE; https://www.encodeproject.org/ENCBS968NZG/


title: TF ChIP-seq from whole organism (ENCLB977NVF)

description:
https://www.encodeproject.org/experiments/ENCSR200QCO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against PQM-1 in L1 larva worms.
experiment encode accession: ENCSR200QCO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR185LPO
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB977NVF
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: unknown

value: ENCBS670MJF at ENCODE; https://www.encodeproject.org/ENCBS670MJF/


title: Control ChIP-seq from whole organism (ENCLB439FEB)

description:
https://www.encodeproject.org/experiments/ENCSR606GBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10543-eGFP fusion proteins.
experiment encode accession: ENCSR606GBZ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB439FEB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10543-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10543

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10543

value: embryonic

value: Kevin White, UChicago

value: ENCBS748DPP at ENCODE; https://www.encodeproject.org/ENCBS748DPP/


title: Control ChIP-seq from whole organism (ENCLB552LAE)

description:
https://www.encodeproject.org/experiments/ENCSR294SZY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR294SZY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB552LAE
size range: 150-350

source_name: Caenorhabditis elegans strain YL418 (unc-119(ed3)III; vrIs65[pGES-1::EFL-1::GFP FLAG:EFL-1 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans efl-1

value: pooled male and female

value: CGC

value: ENCBS823ZKM at ENCODE; https://www.encodeproject.org/ENCBS823ZKM/


title: TF ChIP-seq from whole organism (ENCLB520YLS)

description:
https://www.encodeproject.org/experiments/ENCSR603SRL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZFP-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603SRL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR282QFI
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB520YLS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP534 (unc-119(tm4063) III; wgIs534) hermaphrodite L4 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans zfp-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZFP-2

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS834ACH at ENCODE; https://www.encodeproject.org/ENCBS834ACH/


title: Control ChIP-seq from whole organism (ENCLB502APX)

description:
https://www.encodeproject.org/experiments/ENCSR294SZY/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR294SZY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB502APX
size range: 150-350

value: whole organism

value: whole organisms

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS332TTD at ENCODE; https://www.encodeproject.org/ENCBS332TTD/


title: TF ChIP-seq from whole organism (ENCLB210UKW)

description:
https://www.encodeproject.org/experiments/ENCSR605NFY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR605NFY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR610FIQ
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB210UKW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer2

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS093AGB at ENCODE; https://www.encodeproject.org/ENCBS093AGB/