title: Control ChIP-seq from whole organism (ENCLB303TEP)

description:
https://www.encodeproject.org/experiments/ENCSR805VRS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Side-eGFP fusion proteins.
experiment encode accession: ENCSR805VRS
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB303TEP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain side-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Sidpn

value: whole organisms

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a side-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS660RWY at ENCODE; https://www.encodeproject.org/ENCBS660RWY/


title: TF ChIP-seq from whole organism (ENCLB655NIB)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR471GSA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Jra-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR471GSA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR908EFA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB655NIB
fragmentation methods: sonication (Bioruptor generic)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Jra-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Jra

tag: antibody

value: Jra

value: whole organism

tag: biosample encode accession

tag: collection date

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Jra

tag: Sex

tag: dev stage

value: wandering third instar larva

tag: age

value: unknown

tag: lab

tag: source

value: Kevin White

tag: link

value: ENCBS570CKS at ENCODE; https://www.encodeproject.org/ENCBS570CKS/


title: Control ChIP-seq from whole organism (ENCLB573ODA)

description:
https://www.encodeproject.org/experiments/ENCSR027CZW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing egl-44-eGFP fusion proteins.
experiment encode accession: ENCSR027CZW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB573ODA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain RW12173 (st12173[egl-44::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (66.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. ele...

value: not collected

value: young adult

value: 66.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS762IVB at ENCODE; https://www.encodeproject.org/ENCBS762IVB/


title: TF ChIP-seq from whole organism (ENCLB747AYH)

description:
https://www.encodeproject.org/experiments/ENCSR805JGA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing btn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR805JGA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR247VJD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB747AYH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain btn-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster btn

value: btn

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to btn

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: ENCBS094UJB at ENCODE; https://www.encodeproject.org/ENCBS094UJB/


title: TF ChIP-seq from whole organism (ENCLB473CWW)

description:
https://www.encodeproject.org/experiments/ENCSR088UTK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ZK546.5 in L3 worms.
experiment encode accession: ENCSR088UTK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR040DPF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB473CWW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L3 larva insertion targeting C. elegans ZK546.5

extract_protocol: not provided

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS184LEP at ENCODE; https://www.encodeproject.org/ENCBS184LEP/


title: TF ChIP-seq from whole organism (ENCLB398HET)

description:
https://www.encodeproject.org/experiments/ENCSR088UTK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ZK546.5 in L3 worms.
experiment encode accession: ENCSR088UTK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR040DPF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB398HET
fragmentation methods: sonication (generic microtip)

value: ENCBS252GFX at ENCODE; https://www.encodeproject.org/ENCBS252GFX/


title: Control ChIP-seq from whole organism (ENCLB101FYL)

description:
https://www.encodeproject.org/experiments/ENCSR200UJN/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing D2030.7-eGFP fusion proteins.
experiment encode accession: ENCSR200UJN
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB101FYL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12302 (st12302[D2030.7::TY1::EGFP::3xFLAG] I) young adult (62.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans D2030.7

value: not collected

value: young adult

value: 62.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS717ZVA at ENCODE; https://www.encodeproject.org/ENCBS717ZVA/


title: TF ChIP-seq from whole organism (ENCLB068HYQ)

description:
https://www.encodeproject.org/experiments/ENCSR019JDD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing daf-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR019JDD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR097LJS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB068HYQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP794 (wgIs794(daf-19::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0088_6F02);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans daf-19

value: whole organisms

value: not applicable

value: L4 larva

value: 48 hour

value: ENCBS738HWN at ENCODE; https://www.encodeproject.org/ENCBS738HWN/


title: Control ChIP-seq from whole organism (ENCLB485SWS)

description:
https://www.encodeproject.org/experiments/ENCSR126TTK/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-25-eGFP fusion proteins.
experiment encode accession: ENCSR126TTK
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB485SWS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12287 (st12287[ztf-25 ::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-25

value: whole organism

value: 63 hour

value: ENCBS278TTP at ENCODE; https://www.encodeproject.org/ENCBS278TTP/


title: Control ChIP-seq from whole organism (ENCLB588FAX)

description:
https://www.encodeproject.org/experiments/ENCSR120AEA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-88-eGFP fusion proteins.
experiment encode accession: ENCSR120AEA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB588FAX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP593 (wgIs593(ceh-88::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0091_2F07);unc-119(+));unc-119 (tm4063)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-88

value: L1 larva

value: 6 hour

value: ENCBS548RQS at ENCODE; https://www.encodeproject.org/ENCBS548RQS/


title: TF ChIP-seq from whole organism (ENCLB806YUX)

description:
https://www.encodeproject.org/experiments/ENCSR117BAW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing D2030.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR117BAW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR200UJN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB806YUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: young adult

value: ENCBS918FQG at ENCODE; https://www.encodeproject.org/ENCBS918FQG/


title: TF ChIP-seq from whole organism (ENCLB406KZK)

description:
https://www.encodeproject.org/experiments/ENCSR969UGO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dad-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR969UGO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR345LWU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB406KZK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dad-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dad

value: Dad

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dad

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS686SBU at ENCODE; https://www.encodeproject.org/ENCBS686SBU/


title: TF ChIP-seq from whole organism (ENCLB237TXO)

description:
https://www.encodeproject.org/experiments/ENCSR024MQH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR024MQH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR596SSR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB237TXO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12227 (st12227[lin-29::TY1::EGFP::3xFLAG] II) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lin-29

value: whole organism

value: whole organisms

value: not applicable

value: L4 larva

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS194PJL at ENCODE; https://www.encodeproject.org/ENCBS194PJL/


title: Control ChIP-seq from whole organism (ENCLB351LMJ)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB351LMJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans unc-62

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS233TDF at ENCODE; https://www.encodeproject.org/ENCBS233TDF/


title: Control ChIP-seq from whole organism (ENCLB141VAD)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB141VAD
size range: 150-350

value: pooled male and female

value: ENCBS432GYW at ENCODE; https://www.encodeproject.org/ENCBS432GYW/


title: Control ChIP-seq from whole organism (ENCLB948UIK)

description:
https://www.encodeproject.org/experiments/ENCSR113ROD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ekl-4-eGFP fusion proteins.
experiment encode accession: ENCSR113ROD
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB948UIK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12207 (st12207[ekl-4::TY1::EGFP::3xFLAG] I) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ekl-4

value: not collected

value: young adult

value: 65 hour

value: ENCBS600XFK at ENCODE; https://www.encodeproject.org/ENCBS600XFK/


title: TF ChIP-seq from whole organism (ENCLB283QXV)

description:
https://www.encodeproject.org/experiments/ENCSR024MQH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR024MQH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR596SSR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB283QXV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

value: ENCBS012WMX at ENCODE; https://www.encodeproject.org/ENCBS012WMX/


title: TF ChIP-seq from whole organism (ENCLB577OXH)

description:
https://www.encodeproject.org/experiments/ENCSR804FUX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5204-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR804FUX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR075HOL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB577OXH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG5204-GFP male adult insertion targeting D. melanogaster kmg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5204

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS028HZV at ENCODE; https://www.encodeproject.org/ENCBS028HZV/


title: TF ChIP-seq from whole organism (ENCLB193KBC)

description:
https://www.encodeproject.org/experiments/ENCSR113DVD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mxl-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR113DVD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR537JMU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB193KBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12316 (st12316(mxl-2::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mxl-2

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS310SQM at ENCODE; https://www.encodeproject.org/ENCBS310SQM/


title: Control ChIP-seq from whole organism (ENCLB305BRW)

description:
https://www.encodeproject.org/experiments/ENCSR087KJY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR087KJY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB305BRW
size range: 150-350

source_name: Caenorhabditis elegans strain YL445 (unc119(ed3)III; vrIs81 [pPIE-1::EFL-1::GFP FLAG: EFL-1 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans efl-1

value: pooled male and female

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS770KNS at ENCODE; https://www.encodeproject.org/ENCBS770KNS/


title: Control ChIP-seq from whole organism (ENCLB657CXU)

description:
https://www.encodeproject.org/experiments/ENCSR087KJY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in young adult worms.
experiment encode accession: ENCSR087KJY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB657CXU
size range: 150-350

value: whole organism

value: whole organisms

value: not applicable

value: ENCBS930ZKO at ENCODE; https://www.encodeproject.org/ENCBS930ZKO/


title: Control ChIP-seq from whole organism (ENCLB343FOF)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB343FOF
fragmentation methods: sonication (generic microtip)

value: Michael Snyder

value: ENCBS104NPS at ENCODE; https://www.encodeproject.org/ENCBS104NPS/


title: TF ChIP-seq from whole organism (ENCLB291EHJ)

description:
https://www.encodeproject.org/experiments/ENCSR019JDD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing daf-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR019JDD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR097LJS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB291EHJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L4 larva

value: 48 hour

value: ENCBS657PDD at ENCODE; https://www.encodeproject.org/ENCBS657PDD/


title: Control ChIP-seq from whole organism (ENCLB122UCU)

description:
https://www.encodeproject.org/experiments/ENCSR801NWY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1792-eGFP fusion proteins.
experiment encode accession: ENCSR801NWY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB122UCU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1792-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG1792

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1792

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS307RBA at ENCODE; https://www.encodeproject.org/ENCBS307RBA/


title: TF ChIP-seq from whole organism (ENCLB023ZNY)

description:
https://www.encodeproject.org/experiments/ENCSR460LRT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG13624-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR460LRT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR296KEA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB023ZNY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13624-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster REPTOR

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13624

value: pooled male and female

value: ENCBS546FNJ at ENCODE; https://www.encodeproject.org/ENCBS546FNJ/


title: Control ChIP-seq from whole organism (ENCLB168LLK)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 6
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB168LLK
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: not applicable

value: unknown

value: Michael Snyder, Stanford

value: ENCBS414UAW at ENCODE; https://www.encodeproject.org/ENCBS414UAW/


title: TF ChIP-seq from whole organism (ENCLB057DHH)

description:
https://www.encodeproject.org/experiments/ENCSR287RKG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR287RKG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR399IYX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB057DHH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP775 (wgIs775(dmd-8::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0094G03);unc-119(+));unc-119 (tm4063)) L4 larva (48.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans dmd-8

value: not collected

value: L4 larva

value: 48.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS916PZN at ENCODE; https://www.encodeproject.org/ENCBS916PZN/


title: TF ChIP-seq from whole organism (ENCLB807FCF)

description:
https://www.encodeproject.org/experiments/ENCSR111IAZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pbrm-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR111IAZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR868TYN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB807FCF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12226 (st12226[pbrm-1::TY1::EGFP::3xFLAG] I) young adult (64.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans pbrm-1

value: young adult

value: 64.5 hour

value: ENCBS597RGR at ENCODE; https://www.encodeproject.org/ENCBS597RGR/


title: Control ChIP-seq from whole organism (ENCLB640SGX)

description:
https://www.encodeproject.org/experiments/ENCSR120WLZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing attf-6-eGFP fusion proteins.
experiment encode accession: ENCSR120WLZ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB640SGX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12231 (st12231[attf-6::TY1::EGFP::3xFLAG] I) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans attf-6

value: 64 hour

value: ENCBS684WRP at ENCODE; https://www.encodeproject.org/ENCBS684WRP/


title: TF ChIP-seq from whole organism (ENCLB642KOI)

description:
https://www.encodeproject.org/experiments/ENCSR471GSA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Jra-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR471GSA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR908EFA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB642KOI
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Jra-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Jra

value: Jra

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Jra

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS516WDR at ENCODE; https://www.encodeproject.org/ENCBS516WDR/


title: Control ChIP-seq from whole organism (ENCLB207LWL)

description:
https://www.encodeproject.org/experiments/ENCSR108PJB/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing egl-18-eGFP fusion proteins.
experiment encode accession: ENCSR108PJB
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB207LWL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12252 (st12252[egl-18::TY1::EGFP::3xFLAG] IV) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans egl-18

value: not applicable

value: not collected

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS071LBV at ENCODE; https://www.encodeproject.org/ENCBS071LBV/


title: Control ChIP-seq from whole organism (ENCLB672WOT)

description:
https://www.encodeproject.org/experiments/ENCSR009EUK/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing sea-2-eGFP fusion proteins.
experiment encode accession: ENCSR009EUK
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB672WOT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP586 (wgIs586(sea-2::TY1 EGFP 3xFLAG(P000008_A02_13F06);unc-119(+));unc-119 (tm4063)) young adult (64 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans sea-2

value: young adult

value: 64 hour

value: L1 larva starved after bleaching

value: ENCBS436PTJ at ENCODE; https://www.encodeproject.org/ENCBS436PTJ/


title: TF ChIP-seq from whole organism (ENCLB205QOV)

description:
https://www.encodeproject.org/experiments/ENCSR345VOT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-82 in L2 larva worms.
experiment encode accession: ENCSR345VOT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR874NAF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB205QOV
size range: 150-350

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L2 larva insertion targeting C. elegans ceh-82

value: whole organism

value: whole organisms

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS374HNK at ENCODE; https://www.encodeproject.org/ENCBS374HNK/


title: TF ChIP-seq from whole organism (ENCLB447WTG)

description:
https://www.encodeproject.org/experiments/ENCSR965GGK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32264-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR965GGK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR838HNJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB447WTG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG32264-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster CG32264

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG32264

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS128MBQ at ENCODE; https://www.encodeproject.org/ENCBS128MBQ/


title: Control ChIP-seq from whole organism (ENCLB945PLU)

description:
https://www.encodeproject.org/experiments/ENCSR086JMC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR086JMC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB945PLU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL517 mixed sex young adult insertion targeting C. elegans rpc-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: young adult

value: Michael Snyder

value: ENCBS481QEB at ENCODE; https://www.encodeproject.org/ENCBS481QEB/


title: TF ChIP-seq from whole organism (ENCLB663NTY)

description:
https://www.encodeproject.org/experiments/ENCSR117BAW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing D2030.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR117BAW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR200UJN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB663NTY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12302 (st12302[D2030.7::TY1::EGFP::3xFLAG] I) young adult (62.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans D2030.7

value: whole organism

value: whole organisms

value: not collected

value: 62.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS364LFJ at ENCODE; https://www.encodeproject.org/ENCBS364LFJ/


title: Control ChIP-seq from whole organism (ENCLB106VNT)

description:
https://www.encodeproject.org/experiments/ENCSR100NPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing madf-6-eGFP fusion proteins.
experiment encode accession: ENCSR100NPZ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB106VNT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12237 (st12237[madf-6::TY1::EGFP::3xFLAG] I) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-6

value: not applicable

value: 63 hour

value: ENCBS777NXK at ENCODE; https://www.encodeproject.org/ENCBS777NXK/


title: TF ChIP-seq from whole organism (ENCLB989EFN)

description:
https://www.encodeproject.org/experiments/ENCSR969UGO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dad-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR969UGO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR345LWU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB989EFN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dad-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dad

value: Dad

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dad

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS765QEG at ENCODE; https://www.encodeproject.org/ENCBS765QEG/


title: TF ChIP-seq from whole organism (ENCLB627TKC)

description:
https://www.encodeproject.org/experiments/ENCSR287RKG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR287RKG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR399IYX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB627TKC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not collected

value: L4 larva

value: 48.5 hour

value: ENCBS763ERA at ENCODE; https://www.encodeproject.org/ENCBS763ERA/


title: Control ChIP-seq from whole organism (ENCLB471DYU)

description:
https://www.encodeproject.org/experiments/ENCSR086JMC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR086JMC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB471DYU
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS836MFX at ENCODE; https://www.encodeproject.org/ENCBS836MFX/


title: TF ChIP-seq from whole organism (ENCLB245ZMY)

description:
https://www.encodeproject.org/experiments/ENCSR533CXT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR533CXT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR336MGM
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB245ZMY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain BEAF-32-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster BEAF-32

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to BEAF-32

value: pooled male and female

value: embryonic

value: 0-14 hour

value: ENCBS300HXE at ENCODE; https://www.encodeproject.org/ENCBS300HXE/


title: TF ChIP-seq from whole organism (ENCLB818ZAJ)

description:
https://www.encodeproject.org/experiments/ENCSR533CXT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR533CXT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR336MGM
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB818ZAJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Kevin White, UChicago

value: Kevin White

value: ENCBS017ZBX at ENCODE; https://www.encodeproject.org/ENCBS017ZBX/


title: TF ChIP-seq from whole organism (ENCLB949SUV)

description:
https://www.encodeproject.org/experiments/ENCSR345VOT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-82 in L2 larva worms.
experiment encode accession: ENCSR345VOT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR874NAF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB949SUV
size range: 150-350

value: not applicable

value: L2 larva

value: CGC

value: ENCBS715YUH at ENCODE; https://www.encodeproject.org/ENCBS715YUH/


title: TF ChIP-seq from whole organism (ENCLB162MXL)

description:
https://www.encodeproject.org/experiments/ENCSR969UGO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dad-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR969UGO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR345LWU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB162MXL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Dad

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dad

value: 0-24 hour

value: ENCBS736XJO at ENCODE; https://www.encodeproject.org/ENCBS736XJO/


title: TF ChIP-seq from whole organism (ENCLB278BXW)

description:
https://www.encodeproject.org/experiments/ENCSR193QEM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-44-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR193QEM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR153LYI
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB278BXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12327 (st12327(ceh-44::TY1::EGFP::3xFLAG] III) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-44

value: not collected

value: L4 larva

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS660PRT at ENCODE; https://www.encodeproject.org/ENCBS660PRT/


title: TF ChIP-seq from whole organism (ENCLB858WAE)

description:
https://www.encodeproject.org/experiments/ENCSR193QEM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-44-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR193QEM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR153LYI
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB858WAE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS915YVO at ENCODE; https://www.encodeproject.org/ENCBS915YVO/


title: Control ChIP-seq from whole organism (ENCLB301IOK)

description:
https://www.encodeproject.org/experiments/ENCSR086RZO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR086RZO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB301IOK
size range: 150-350

source_name: Caenorhabditis elegans strain OP228 (unc-119(ed3) III; wgIs228) mixed sex mixed stage (embryo) insertion targeting C. elegans nhr-237

value: not applicable

value: pooled male and female

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: ENCBS120OOY at ENCODE; https://www.encodeproject.org/ENCBS120OOY/


title: TF ChIP-seq from whole organism (ENCLB063YLY)

description:
https://www.encodeproject.org/experiments/ENCSR111IAZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pbrm-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR111IAZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR868TYN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB063YLY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: young adult

value: 64.5 hour

value: ENCBS579GBX at ENCODE; https://www.encodeproject.org/ENCBS579GBX/


title: TF ChIP-seq from whole organism (ENCLB276ZBY)

description:
https://www.encodeproject.org/experiments/ENCSR793JPA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing tx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR793JPA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR010UCR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB276ZBY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain tx-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster tx

value: tx

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tx

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS269SRQ at ENCODE; https://www.encodeproject.org/ENCBS269SRQ/


title: Control ChIP-seq from whole organism (ENCLB688RQK)

description:
https://www.encodeproject.org/experiments/ENCSR459PGV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins.
experiment encode accession: ENCSR459PGV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB688RQK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pdp1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Pdp1

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pdp1

value: ENCBS584XVC at ENCODE; https://www.encodeproject.org/ENCBS584XVC/


title: TF ChIP-seq from whole organism (ENCLB307RIP)

description:
https://www.encodeproject.org/experiments/ENCSR532BHA/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CrebB-eGFP fusion proteins.
experiment encode accession: ENCSR532BHA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR719RUU
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB307RIP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CrebB mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CrebB

value: CrebB

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CrebB

value: pooled male and female

value: ENCBS479MHI at ENCODE; https://www.encodeproject.org/ENCBS479MHI/


title: TF ChIP-seq from whole organism (ENCLB641NQP)

description:
https://www.encodeproject.org/experiments/ENCSR532BHA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CrebB-eGFP fusion proteins.
experiment encode accession: ENCSR532BHA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR719RUU
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB641NQP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS006RRC at ENCODE; https://www.encodeproject.org/ENCBS006RRC/


title: TF ChIP-seq from whole organism (ENCLB820AQN)

description:
https://www.encodeproject.org/experiments/ENCSR793JPA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing tx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR793JPA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR010UCR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB820AQN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: tx

value: ENCBS878FOJ at ENCODE; https://www.encodeproject.org/ENCBS878FOJ/


title: Control ChIP-seq from whole organism (ENCLB453UQT)

description:
https://www.encodeproject.org/experiments/ENCSR086RZO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR086RZO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB453UQT
size range: 150-350

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS391XKP at ENCODE; https://www.encodeproject.org/ENCBS391XKP/


title: Control ChIP-seq from whole organism (ENCLB708YKK)

description:
https://www.encodeproject.org/experiments/ENCSR084IVO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR084IVO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB708YKK
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L2 larva insertion targeting C. elegans nhr-11

value: whole organism

value: L2 larva

value: ENCBS516BOD at ENCODE; https://www.encodeproject.org/ENCBS516BOD/


title: TF ChIP-seq from whole organism (ENCLB160ITG)

description:
https://www.encodeproject.org/experiments/ENCSR533CXT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR533CXT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR336MGM
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB160ITG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to BEAF-32

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS972JPO at ENCODE; https://www.encodeproject.org/ENCBS972JPO/


title: Control ChIP-seq from whole organism (ENCLB117KQF)

description:
https://www.encodeproject.org/experiments/ENCSR530FXD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530FXD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB117KQF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bab1-RA (bab1-s)-GFP female adult insertion targeting D. melanogaster bab1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bab1

value: female

value: adult

value: ENCBS019ODT at ENCODE; https://www.encodeproject.org/ENCBS019ODT/


title: TF ChIP-seq from whole organism (ENCLB440VHG)

description:
https://www.encodeproject.org/experiments/ENCSR113DVD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mxl-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR113DVD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR537JMU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB440VHG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12316 (st12316(mxl-2::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mxl-2

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS086KIF at ENCODE; https://www.encodeproject.org/ENCBS086KIF/


title: Control ChIP-seq from whole organism (ENCLB263VWA)

description:
https://www.encodeproject.org/experiments/ENCSR964EHG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing eyg-eGFP fusion proteins.
experiment encode accession: ENCSR964EHG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB263VWA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain eyg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster eyg

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to eyg

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS748JSH at ENCODE; https://www.encodeproject.org/ENCBS748JSH/


title: TF ChIP-seq from whole organism (ENCLB909CNR)

description:
https://www.encodeproject.org/experiments/ENCSR084BKF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in L4 larva worms.
experiment encode accession: ENCSR084BKF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR941UZQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB909CNR
size range: 150-350

source_name: Caenorhabditis elegans strain OP240 (unc-119(ed3) III; wgIs240) mixed sex L4 larva insertion targeting C. elegans lsy-2

value: not applicable

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS516MSQ at ENCODE; https://www.encodeproject.org/ENCBS516MSQ/


title: TF ChIP-seq from whole organism (ENCLB713PEW)

description:
https://www.encodeproject.org/experiments/ENCSR965GGK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32264-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR965GGK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR838HNJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB713PEW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG32264

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS497XUG at ENCODE; https://www.encodeproject.org/ENCBS497XUG/


title: TF ChIP-seq from whole organism (ENCLB423EPK)

description:
https://www.encodeproject.org/experiments/ENCSR530BVF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5180-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530BVF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR388HZU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB423EPK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG5180-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG5180

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5180

value: 0-16 hour

value: ENCBS814ZQB at ENCODE; https://www.encodeproject.org/ENCBS814ZQB/


title: Control ChIP-seq from whole organism (ENCLB382AEL)

description:
https://www.encodeproject.org/experiments/ENCSR084IVO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR084IVO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB382AEL
size range: 150-350

value: whole organisms

value: pooled male and female

value: L2 larva

value: ENCBS773LKF at ENCODE; https://www.encodeproject.org/ENCBS773LKF/


title: Control ChIP-seq from whole organism (ENCLB246JET)

description:
https://www.encodeproject.org/experiments/ENCSR840VLX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR840VLX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB246JET
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15479-GFP mixed sex embryo (0-4 hours) insertion targeting D. melanogaster Mabi

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mabi

value: embryonic

value: 0-4 hour

value: ENCBS988FXI at ENCODE; https://www.encodeproject.org/ENCBS988FXI/


title: TF ChIP-seq from whole organism (ENCLB923AEA)

description:
https://www.encodeproject.org/experiments/ENCSR532BHA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CrebB-eGFP fusion proteins.
experiment encode accession: ENCSR532BHA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR719RUU
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB923AEA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: CrebB

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CrebB

value: 0-24 hour

value: ENCBS485LEU at ENCODE; https://www.encodeproject.org/ENCBS485LEU/


title: TF ChIP-seq from whole organism (ENCLB752SEJ)

description:
https://www.encodeproject.org/experiments/ENCSR083ZSV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ZTF-11 in L1 worms.
experiment encode accession: ENCSR083ZSV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR217FIF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB752SEJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex L1 larva insertion targeting C. elegans ztf-11

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS050NSM at ENCODE; https://www.encodeproject.org/ENCBS050NSM/


title: Control ChIP-seq from whole organism (ENCLB659QHC)

description:
https://www.encodeproject.org/experiments/ENCSR083EPE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR083EPE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB659QHC
size range: 150-350

source_name: Caenorhabditis elegans strain OP86 (unc-119(ed3) III; wgIs86) mixed sex L2 larva insertion targeting C. elegans peb-1

value: whole organisms

value: pooled male and female

value: L2 larva

value: CGC

value: ENCBS796HRR at ENCODE; https://www.encodeproject.org/ENCBS796HRR/


title: TF ChIP-seq from whole organism (ENCLB098SVE)

description:
https://www.encodeproject.org/experiments/ENCSR530BVF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5180-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530BVF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR388HZU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB098SVE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5180

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS926BRT at ENCODE; https://www.encodeproject.org/ENCBS926BRT/


title: Control ChIP-seq from whole organism (ENCLB569KKI)

description:
https://www.encodeproject.org/experiments/ENCSR964VKV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG16863-eGFP fusion proteins.
experiment encode accession: ENCSR964VKV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB569KKI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG16863-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG16863

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG16863

value: ENCBS364QXF at ENCODE; https://www.encodeproject.org/ENCBS364QXF/


title: TF ChIP-seq from whole organism (ENCLB540VRK)

description:
https://www.encodeproject.org/experiments/ENCSR084BKF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in L4 larva worms.
experiment encode accession: ENCSR084BKF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR941UZQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB540VRK
size range: 150-350

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS492KTH at ENCODE; https://www.encodeproject.org/ENCBS492KTH/


title: Control ChIP-seq from whole organism (ENCLB945MMM)

description:
https://www.encodeproject.org/experiments/ENCSR529PRD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9437-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR529PRD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB945MMM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9437-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster hng1

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9437

value: pooled male and female

value: ENCBS501QPX at ENCODE; https://www.encodeproject.org/ENCBS501QPX/


title: TF ChIP-seq from whole organism (ENCLB797FVK)

description:
https://www.encodeproject.org/experiments/ENCSR521NPD/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12071-eGFP fusion proteins.
experiment encode accession: ENCSR521NPD
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR688FTD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB797FVK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12071-GFP mixed sex embryo (12-24 hours) insertion targeting D. melanogaster CG12071

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12071

value: ENCBS673PQT at ENCODE; https://www.encodeproject.org/ENCBS673PQT/


title: TF ChIP-seq from whole organism (ENCLB803EYC)

description:
https://www.encodeproject.org/experiments/ENCSR530BVF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5180-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530BVF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR388HZU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB803EYC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5180

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS638BXX at ENCODE; https://www.encodeproject.org/ENCBS638BXX/


title: Control ChIP-seq from whole organism (ENCLB031FBG)

description:
https://www.encodeproject.org/experiments/ENCSR527STB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR527STB
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB031FBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd96Cb embryo (0-24 hours) insertion targeting D. melanogaster fd96Cb

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd96Cb

value: not collected

value: 0-24 hour

value: Kevin White

value: ENCBS032ERC at ENCODE; https://www.encodeproject.org/ENCBS032ERC/


title: TF ChIP-seq from whole organism (ENCLB146LNL)

description:
https://www.encodeproject.org/experiments/ENCSR083ZSV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ZTF-11 in L1 worms.
experiment encode accession: ENCSR083ZSV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR217FIF
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB146LNL
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS755BOE at ENCODE; https://www.encodeproject.org/ENCBS755BOE/


title: TF ChIP-seq from whole organism (ENCLB920OUC)

description:
https://www.encodeproject.org/experiments/ENCSR791TWT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CHES-1-like-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR791TWT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR946VOY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB920OUC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CHES-1-like-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CHES-1-like

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CHES-1-like

value: pooled male and female

value: embryonic

value: ENCBS620VPH at ENCODE; https://www.encodeproject.org/ENCBS620VPH/


title: TF ChIP-seq from whole organism (ENCLB852KVT)

description:
https://www.encodeproject.org/experiments/ENCSR791TWT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CHES-1-like-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR791TWT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR946VOY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB852KVT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: ENCBS812OXB at ENCODE; https://www.encodeproject.org/ENCBS812OXB/


title: Control ChIP-seq from whole organism (ENCLB853NYP)

description:
https://www.encodeproject.org/experiments/ENCSR524HLR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Ssrp-eGFP fusion proteins.
experiment encode accession: ENCSR524HLR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB853NYP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Ssrp

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ssrp

value: 0-16 hour

value: Kevin White

value: ENCBS557ARP at ENCODE; https://www.encodeproject.org/ENCBS557ARP/


title: TF ChIP-seq from whole organism (ENCLB822IDH)

description:
https://www.encodeproject.org/experiments/ENCSR521NPD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12071-eGFP fusion proteins.
experiment encode accession: ENCSR521NPD
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR688FTD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB822IDH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12071

value: ENCBS288PGG at ENCODE; https://www.encodeproject.org/ENCBS288PGG/


title: TF ChIP-seq from whole organism (ENCLB853SWY)

description:
https://www.encodeproject.org/experiments/ENCSR338HCL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-25-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR338HCL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR996ZXI
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB853SWY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP33 (unc-119(ed3) III; wgIs33) hermaphrodite L4 larva insertion targeting C. elegans nhr-25

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-25

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS499OQE at ENCODE; https://www.encodeproject.org/ENCBS499OQE/


title: Control ChIP-seq from whole organism (ENCLB864QLA)

description:
https://www.encodeproject.org/experiments/ENCSR083EPE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR083EPE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB864QLA
size range: 150-350

value: whole organism

value: not applicable

value: pooled male and female

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS944TQU at ENCODE; https://www.encodeproject.org/ENCBS944TQU/


title: TF ChIP-seq from whole organism (ENCLB607HNQ)

description:
https://www.encodeproject.org/experiments/ENCSR453UOF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR453UOF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR890EWP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB607HNQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pif1B-GFP mixed sex pupa insertion targeting D. melanogaster Pif1B

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1B

value: pupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS794JLC at ENCODE; https://www.encodeproject.org/ENCBS794JLC/


title: TF ChIP-seq from whole organism (ENCLB468WZW)

description:
https://www.encodeproject.org/experiments/ENCSR453UOF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR453UOF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR890EWP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB468WZW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: unknown

value: ENCBS915TDC at ENCODE; https://www.encodeproject.org/ENCBS915TDC/


title: TF ChIP-seq from whole organism (ENCLB482GUJ)

description:
https://www.encodeproject.org/experiments/ENCSR521NPD/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12071-eGFP fusion proteins.
experiment encode accession: ENCSR521NPD
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR688FTD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB482GUJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12071

value: embryonic

value: ENCBS031EZK at ENCODE; https://www.encodeproject.org/ENCBS031EZK/


title: TF ChIP-seq from whole organism (ENCLB744VYK)

description:
https://www.encodeproject.org/experiments/ENCSR961TSV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5245-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR961TSV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR346LCD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB744VYK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG5245-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG5245

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5245

value: 0-16 hour

value: ENCBS321ZNW at ENCODE; https://www.encodeproject.org/ENCBS321ZNW/


title: Control ChIP-seq from whole organism (ENCLB265PKB)

description:
https://www.encodeproject.org/experiments/ENCSR842BMI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG13204-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR842BMI
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB265PKB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13204-GFP mixed sex pupa (24 hours) insertion targeting D. melanogaster CG13204

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13204

value: pooled male and female

value: 24 hour

value: ENCBS786XFT at ENCODE; https://www.encodeproject.org/ENCBS786XFT/


title: TF ChIP-seq from whole organism (ENCLB323BGO)

description:
https://www.encodeproject.org/experiments/ENCSR517LBX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9797-eGFP fusion proteins.
experiment encode accession: ENCSR517LBX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR746QSR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB323BGO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9797-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster M1BP

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9797

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS405RNP at ENCODE; https://www.encodeproject.org/ENCBS405RNP/


title: TF ChIP-seq from whole organism (ENCLB019WFV)

description:
https://www.encodeproject.org/experiments/ENCSR833EEQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG34376-eGFP fusion proteins.
experiment encode accession: ENCSR833EEQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR303RFP
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB019WFV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG34376-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG34376

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG34376

value: Kevin White

value: ENCBS203EDE at ENCODE; https://www.encodeproject.org/ENCBS203EDE/


title: TF ChIP-seq from whole organism (ENCLB797DRX)

description:
https://www.encodeproject.org/experiments/ENCSR519DDL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6683-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR519DDL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964CND
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB797DRX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6683-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster CG6683

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6683

value: embryonic

value: ENCBS741JUE at ENCODE; https://www.encodeproject.org/ENCBS741JUE/


title: TF ChIP-seq from whole organism (ENCLB349BNI)

description:
https://www.encodeproject.org/experiments/ENCSR961TSV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5245-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR961TSV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR346LCD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB349BNI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5245

value: 0-16 hour

value: ENCBS265GHW at ENCODE; https://www.encodeproject.org/ENCBS265GHW/


title: TF ChIP-seq from whole organism (ENCLB157IUL)

description:
https://www.encodeproject.org/experiments/ENCSR453UOF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pif1B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR453UOF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR890EWP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB157IUL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1B

value: pooled male and female

value: pupa

value: unknown

value: ENCBS897XAJ at ENCODE; https://www.encodeproject.org/ENCBS897XAJ/


title: Control ChIP-seq from whole organism (ENCLB310JIG)

description:
https://www.encodeproject.org/experiments/ENCSR338IOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR338IOQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB310JIG
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L1 larva whole organism

value: whole organisms

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS004JVM at ENCODE; https://www.encodeproject.org/ENCBS004JVM/


title: TF ChIP-seq from whole organism (ENCLB079SYM)

description:
https://www.encodeproject.org/experiments/ENCSR961TSV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5245-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR961TSV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR346LCD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB079SYM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: Kevin White

value: ENCBS208AFE at ENCODE; https://www.encodeproject.org/ENCBS208AFE/


title: TF ChIP-seq from whole organism (ENCLB666YFT)

description:
https://www.encodeproject.org/experiments/ENCSR836VAV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR836VAV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR734WSG
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB666YFT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain usp-GFP mixed sex wandering third instar larva whole organism stably expressing C-terminal eGFP-tagged usp

value: usp

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to usp

value: wandering third instar larva

value: ENCBS242PIP at ENCODE; https://www.encodeproject.org/ENCBS242PIP/


title: Control ChIP-seq from whole organism (ENCLB308ZQZ)

description:
https://www.encodeproject.org/experiments/ENCSR338IOQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR338IOQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB308ZQZ
size range: 150-350

value: pooled male and female

value: ENCBS879NBA at ENCODE; https://www.encodeproject.org/ENCBS879NBA/


title: TF ChIP-seq from whole organism (ENCLB890BNV)

description:
https://www.encodeproject.org/experiments/ENCSR519DDL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6683-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR519DDL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964CND
encode release date: 2017-12-11
lab: Kevin White, UChicago
library encode accession: ENCLB890BNV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6683

value: embryonic

value: ENCBS544IEO at ENCODE; https://www.encodeproject.org/ENCBS544IEO/


title: Control ChIP-seq from whole organism (ENCLB298NUV)

description:
https://www.encodeproject.org/experiments/ENCSR077JEX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR077JEX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB298NUV
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L4 larva insertion targeting C. elegans snpc-4

value: whole organisms

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS757FWB at ENCODE; https://www.encodeproject.org/ENCBS757FWB/


title: Control ChIP-seq from whole organism (ENCLB449XPB)

description:
https://www.encodeproject.org/experiments/ENCSR840JKR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR840JKR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB449XPB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17359 embryo (0-14 hours) insertion targeting D. melanogaster CG17359

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17359

value: not collected

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS492ZBS at ENCODE; https://www.encodeproject.org/ENCBS492ZBS/


title: TF ChIP-seq from whole organism (ENCLB661MGC)

description:
https://www.encodeproject.org/experiments/ENCSR836VAV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR836VAV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR734WSG
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB661MGC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: usp

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to usp

value: pooled male and female

value: wandering third instar larva

value: ENCBS638FBK at ENCODE; https://www.encodeproject.org/ENCBS638FBK/


title: TF ChIP-seq from whole organism (ENCLB881MJI)

description:
https://www.encodeproject.org/experiments/ENCSR076LYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F23B12.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR076LYI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR167WDQ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB881MJI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP429 (unc-119(tm4063) III; wgIs429) hermaphrodite young adult insertion targeting C. elegans F23B12.7

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F23B12-7

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS969XEY at ENCODE; https://www.encodeproject.org/ENCBS969XEY/


title: TF ChIP-seq from whole organism (ENCLB722DLY)

description:
https://www.encodeproject.org/experiments/ENCSR959SWC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing achi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR959SWC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497AYX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB722DLY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain achi-GFP mixed sex prepupa insertion targeting D. melanogaster achi

value: achi

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to achi

value: prepupa

value: unknown

value: ENCBS936RXK at ENCODE; https://www.encodeproject.org/ENCBS936RXK/


title: TF ChIP-seq from whole organism (ENCLB061SFK)

description:
https://www.encodeproject.org/experiments/ENCSR959SWC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing achi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR959SWC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497AYX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB061SFK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Kevin White, UChicago

value: Kevin White

value: ENCBS844HZB at ENCODE; https://www.encodeproject.org/ENCBS844HZB/


title: TF ChIP-seq from whole organism (ENCLB924UKK)

description:
https://www.encodeproject.org/experiments/ENCSR829XOQ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14962-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR829XOQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR238IHN
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB924UKK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14962-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Asciz

value: Asciz

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14962

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS129POA at ENCODE; https://www.encodeproject.org/ENCBS129POA/


title: TF ChIP-seq from whole organism (ENCLB001XLB)

description:
https://www.encodeproject.org/experiments/ENCSR517LBX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9797-eGFP fusion proteins.
experiment encode accession: ENCSR517LBX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR746QSR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB001XLB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9797

value: ENCBS742UHN at ENCODE; https://www.encodeproject.org/ENCBS742UHN/


title: Control ChIP-seq from whole organism (ENCLB671JKJ)

description:
https://www.encodeproject.org/experiments/ENCSR512MTT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR512MTT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB671JKJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lms mixed sex embryo (6-18 hours) insertion targeting D. melanogaster lms

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13424

value: ENCBS785YTC at ENCODE; https://www.encodeproject.org/ENCBS785YTC/


title: TF ChIP-seq from whole organism (ENCLB686KTP)

description:
https://www.encodeproject.org/experiments/ENCSR507PVB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17568-eGFP fusion proteins.
experiment encode accession: ENCSR507PVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR478KQW
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB686KTP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17568-GFP mixed sex embryo (0-20 hours) insertion targeting D. melanogaster CG17568

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17568

value: 0-20 hour

value: ENCBS198IUN at ENCODE; https://www.encodeproject.org/ENCBS198IUN/


title: TF ChIP-seq from whole organism (ENCLB064AEO)

description:
https://www.encodeproject.org/experiments/ENCSR959SWC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing achi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR959SWC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR497AYX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB064AEO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: achi

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to achi

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS453YWB at ENCODE; https://www.encodeproject.org/ENCBS453YWB/


title: TF ChIP-seq from whole organism (ENCLB417ELI)

description:
https://www.encodeproject.org/experiments/ENCSR075KVC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against MDL-1 in L4 larva worms.
experiment encode accession: ENCSR075KVC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR534YJS
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB417ELI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L4 larva insertion targeting C. elegans mdl-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS744UBJ at ENCODE; https://www.encodeproject.org/ENCBS744UBJ/


title: TF ChIP-seq from whole organism (ENCLB428GAS)

description:
https://www.encodeproject.org/experiments/ENCSR076LYI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F23B12.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR076LYI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR167WDQ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB428GAS
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F23B12-7

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS301FRZ at ENCODE; https://www.encodeproject.org/ENCBS301FRZ/


title: TF ChIP-seq from whole organism (ENCLB546YDG)

description:
https://www.encodeproject.org/experiments/ENCSR517LBX/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9797-eGFP fusion proteins.
experiment encode accession: ENCSR517LBX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR746QSR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB546YDG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9797

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS591VCR at ENCODE; https://www.encodeproject.org/ENCBS591VCR/


title: Control ChIP-seq from whole organism (ENCLB533GBG)

description:
https://www.encodeproject.org/experiments/ENCSR961MTI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing emc-eGFP fusion proteins.
experiment encode accession: ENCSR961MTI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB533GBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain emc-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster emc

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to emc

value: pooled male and female

value: Kevin White

value: ENCBS785WAS at ENCODE; https://www.encodeproject.org/ENCBS785WAS/


title: TF ChIP-seq from whole organism (ENCLB402KTL)

description:
https://www.encodeproject.org/experiments/ENCSR833EEQ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG34376-eGFP fusion proteins.
experiment encode accession: ENCSR833EEQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR303RFP
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB402KTL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG34376

value: ENCBS703ESL at ENCODE; https://www.encodeproject.org/ENCBS703ESL/


title: Control ChIP-seq from whole organism (ENCLB137COL)

description:
https://www.encodeproject.org/experiments/ENCSR077JEX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR077JEX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB137COL
size range: 150-350

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS923LJW at ENCODE; https://www.encodeproject.org/ENCBS923LJW/


title: TF ChIP-seq from whole organism (ENCLB046RRH)

description:
https://www.encodeproject.org/experiments/ENCSR338HCL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-25-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR338HCL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR996ZXI
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB046RRH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP33 (unc-119(ed3) III; wgIs33) hermaphrodite L4 larva insertion targeting C. elegans nhr-25

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-25

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS781FUA at ENCODE; https://www.encodeproject.org/ENCBS781FUA/