title: Control ChIP-seq from whole organism (ENCLB649IWR)

description:
https://www.encodeproject.org/experiments/ENCSR171HDO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing mcd-1-eGFP fusion proteins.
experiment encode accession: ENCSR171HDO
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB649IWR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12215 (st12215[mcd-1::TY1::EGFP::3xFLAG] II) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mcd-1

value: whole organisms

value: not collected

value: young adult

value: 65 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS200YWU at ENCODE; https://www.encodeproject.org/ENCBS200YWU/


title: TF ChIP-seq from whole organism (ENCLB569MIU)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB569MIU
size range: 150-350

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans unc-62

extract_protocol: not provided

tag: antibody

value: whole organism

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: Sex

value: pooled male and female

tag: dev stage

value: L4 larva

tag: age

value: unknown

tag: lab

value: Michael Snyder, Stanford

tag: source

value: CGC

tag: link

value: ENCBS233TDF at ENCODE; https://www.encodeproject.org/ENCBS233TDF/


title: TF ChIP-seq from whole organism (ENCLB078SIM)

description:
https://www.encodeproject.org/experiments/ENCSR162EDN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing B0019.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR162EDN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR602WXH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB078SIM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12288 (st12288[B0019.2::TY1::EGFP::3xFLAG] I) young adult (63.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans B0019.2

value: 63.5 hour

tag: worm synchronization stage

value: ENCBS890CEH at ENCODE; https://www.encodeproject.org/ENCBS890CEH/


title: TF ChIP-seq from whole organism (ENCLB128LHJ)

description:
https://www.encodeproject.org/experiments/ENCSR162EDN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing B0019.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR162EDN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR602WXH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB128LHJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not collected

value: ENCBS919AUA at ENCODE; https://www.encodeproject.org/ENCBS919AUA/


title: TF ChIP-seq from whole organism (ENCLB448GSE)

description:
https://www.encodeproject.org/experiments/ENCSR493LWV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hmx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR493LWV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR132NXK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB448GSE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Hmx-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hmx

value: Hmx

tag: note

value: D. mel line contraining an intronic eGFP exon to create a Hmx-GFP fusion gene

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS808SVP at ENCODE; https://www.encodeproject.org/ENCBS808SVP/


title: TF ChIP-seq from whole organism (ENCLB002KKB)

description:
https://www.encodeproject.org/experiments/ENCSR233ZXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR233ZXZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR137VPX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB002KKB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12301 (st12301[ztf-6::TY1::EGFP::3xFLAG] I) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-6

value: whole organism

value: not applicable

value: young adult

value: 62 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS397PXA at ENCODE; https://www.encodeproject.org/ENCBS397PXA/


title: TF ChIP-seq from whole organism (ENCLB522TEQ)

description:
https://www.encodeproject.org/experiments/ENCSR233ZXZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR233ZXZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR137VPX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB522TEQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not collected

value: ENCBS360BZC at ENCODE; https://www.encodeproject.org/ENCBS360BZC/


title: TF ChIP-seq from whole organism (ENCLB804TET)

description:
https://www.encodeproject.org/experiments/ENCSR043ODK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing daf-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR043ODK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR072VBV
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB804TET
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP790 (wgIs790(daf-8::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0088B10);unc-119(+));unc-119 (tm4063)) L4 larva (47 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans daf-8

value: L4 larva

value: 47 hour

value: ENCBS073AON at ENCODE; https://www.encodeproject.org/ENCBS073AON/


title: Control ChIP-seq from whole organism (ENCLB403AFH)

description:
https://www.encodeproject.org/experiments/ENCSR326VJX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y56A3A.18-eGFP fusion proteins.
experiment encode accession: ENCSR326VJX
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB403AFH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12265 (st12265[Y56A3A.18 ::TY1::EGFP::3xFLAG] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y56A3A.18

value: 63 hour

value: ENCBS692PYY at ENCODE; https://www.encodeproject.org/ENCBS692PYY/


title: Control ChIP-seq from whole organism (ENCLB212QDW)

description:
https://www.encodeproject.org/experiments/ENCSR818AKL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(z)-eGFP fusion proteins.
experiment encode accession: ENCSR818AKL
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB212QDW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(z)-GFP mixed sex prepupa insertion targeting D. melanogaster E(z)

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(z)

value: pooled male and female

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS867KUZ at ENCODE; https://www.encodeproject.org/ENCBS867KUZ/


title: TF ChIP-seq from whole organism (ENCLB004SIL)

description:
https://www.encodeproject.org/experiments/ENCSR043ODK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing daf-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR043ODK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR072VBV
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB004SIL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS666DYA at ENCODE; https://www.encodeproject.org/ENCBS666DYA/


title: TF ChIP-seq from whole organism (ENCLB320TUL)

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 6
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB320TUL
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS936RBO at ENCODE; https://www.encodeproject.org/ENCBS936RBO/


title: TF ChIP-seq from whole organism (ENCLB153ZMR)

description:
https://www.encodeproject.org/experiments/ENCSR816TQX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Vsx2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR816TQX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR708SDJ
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB153ZMR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-300

source_name: Drosophila melanogaster strain Vsx2-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Vsx2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Vsx2

value: pooled male and female

value: wandering third instar larva

value: ENCBS973KXO at ENCODE; https://www.encodeproject.org/ENCBS973KXO/


title: Control ChIP-seq from whole organism (ENCLB315MIS)

description:
https://www.encodeproject.org/experiments/ENCSR043EOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing pes-1-eGFP fusion proteins.
experiment encode accession: ENCSR043EOJ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB315MIS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12239 (st12239[pes-1::TY1::EGFP::3xFLAG] IV) early embryo (1 hour) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans pes-1

value: not collected

value: early embryonic

value: 1 hour

value: egg bleaching

value: ENCBS582QVN at ENCODE; https://www.encodeproject.org/ENCBS582QVN/


title: TF ChIP-seq from whole organism (ENCLB193ECM)

description:
https://www.encodeproject.org/experiments/ENCSR816TQX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Vsx2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR816TQX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR708SDJ
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB193ECM
fragmentation methods: sonication (Bioruptor generic)
size range: 225-300

value: whole organism

value: not applicable

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS580PQF at ENCODE; https://www.encodeproject.org/ENCBS580PQF/


title: Control ChIP-seq from whole organism (ENCLB240LXI)

description:
https://www.encodeproject.org/experiments/ENCSR497AYX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing achi-eGFP fusion proteins.
experiment encode accession: ENCSR497AYX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB240LXI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain achi-GFP mixed sex prepupa insertion targeting D. melanogaster achi

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to achi

value: prepupa

value: ENCBS929PNC at ENCODE; https://www.encodeproject.org/ENCBS929PNC/


title: TF ChIP-seq from whole organism (ENCLB640RKI)

description:
https://www.encodeproject.org/experiments/ENCSR156AQU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing egl-43-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR156AQU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR408DLT
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB640RKI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12181 (st12181[egl-43::TY1::EGFP::3xFLAG] II) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans egl-43

value: L4 larva

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS550ORR at ENCODE; https://www.encodeproject.org/ENCBS550ORR/


title: TF ChIP-seq from whole organism (ENCLB497DDK)

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB497DDK
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS468WZU at ENCODE; https://www.encodeproject.org/ENCBS468WZU/


title: TF ChIP-seq from whole organism (ENCLB502OSV)

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB502OSV
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: unknown

value: ENCBS671SBK at ENCODE; https://www.encodeproject.org/ENCBS671SBK/


title: Control ChIP-seq from whole organism (ENCLB324DVM)

description:
https://www.encodeproject.org/experiments/ENCSR354PDY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR354PDY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB324DVM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: ENCBS760UKT at ENCODE; https://www.encodeproject.org/ENCBS760UKT/


title: TF ChIP-seq from whole organism (ENCLB523NTB)

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB523NTB
size range: 150-350

value: L4 larva

value: CGC

value: ENCBS432GYW at ENCODE; https://www.encodeproject.org/ENCBS432GYW/


title: TF ChIP-seq from whole organism (ENCLB954YMV)

description:
https://www.encodeproject.org/experiments/ENCSR156AQU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing egl-43-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR156AQU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR408DLT
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB954YMV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS518XXM at ENCODE; https://www.encodeproject.org/ENCBS518XXM/


title: Control ChIP-seq from whole organism (ENCLB746WTG)

description:
https://www.encodeproject.org/experiments/ENCSR153LYI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-44-eGFP fusion proteins.
experiment encode accession: ENCSR153LYI
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB746WTG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12327 (st12327(ceh-44::TY1::EGFP::3xFLAG] III) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-44

value: whole organism

value: ENCBS739TTQ at ENCODE; https://www.encodeproject.org/ENCBS739TTQ/


title: Control ChIP-seq from whole organism (ENCLB638NOG)

description:
https://www.encodeproject.org/experiments/ENCSR986ULH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hnf4-eGFP fusion proteins.
experiment encode accession: ENCSR986ULH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB638NOG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hnf4-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Hnf4

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hnf4

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS232DAX at ENCODE; https://www.encodeproject.org/ENCBS232DAX/


title: TF ChIP-seq from whole organism (ENCLB888XMF)

description:
https://www.encodeproject.org/experiments/ENCSR323DRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR323DRJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR607FMZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB888XMF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP436 (wgIs436(C01G12.1::TY1 EGFP 3xFLAG(92D06);unc-119(+);unc-119(tm4063)) L4 larva (50 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans madf-5

value: whole organisms

value: L4 larva

value: 50 hour

value: ENCBS911DYL at ENCODE; https://www.encodeproject.org/ENCBS911DYL/


title: TF ChIP-seq from whole organism (ENCLB277IYP)

description:
https://www.encodeproject.org/experiments/ENCSR255EYF/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L4 larva worms.
experiment encode accession: ENCSR255EYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346GYL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB277IYP
fragmentation methods: sonication (generic microtip)

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS431NJC at ENCODE; https://www.encodeproject.org/ENCBS431NJC/


title: TF ChIP-seq from whole organism (ENCLB708IAU)

description:
https://www.encodeproject.org/experiments/ENCSR323DRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR323DRJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR607FMZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB708IAU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not collected

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS300TLQ at ENCODE; https://www.encodeproject.org/ENCBS300TLQ/


title: TF ChIP-seq from whole organism (ENCLB503MAL)

description:
https://www.encodeproject.org/experiments/ENCSR985TNB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR985TNB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR195UPC
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB503MAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Drosophila melanogaster strain foxo-MiMIC-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster foxo

value: foxo

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a foxo-GFP fusion gene

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Hugo Bellen

value: ENCBS997LAM at ENCODE; https://www.encodeproject.org/ENCBS997LAM/


title: TF ChIP-seq from whole organism (ENCLB833AKO)

description:
https://www.encodeproject.org/experiments/ENCSR254SSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L2 larva worms.
experiment encode accession: ENCSR254SSJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR650IGG
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB833AKO
size range: 150-350

source_name: Caenorhabditis elegans strain OP217 (unc-119(ed3) III; ddIs172) mixed sex L2 larva insertion targeting C. elegans aly-2

value: whole organisms

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS829QJJ at ENCODE; https://www.encodeproject.org/ENCBS829QJJ/


title: Control ChIP-seq from whole organism (ENCLB642HNX)

description:
https://www.encodeproject.org/experiments/ENCSR154OOX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing dmd-9-eGFP fusion proteins.
experiment encode accession: ENCSR154OOX
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB642HNX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RJP5357 (rp169(dmd-9::GFP::AID::TEV::3xFLAG) IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans dmd-9

value: whole organism

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: ENCBS929FAQ at ENCODE; https://www.encodeproject.org/ENCBS929FAQ/


title: TF ChIP-seq from whole organism (ENCLB193MRX)

description:
https://www.encodeproject.org/experiments/ENCSR151DAG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR151DAG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR621SAX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB193MRX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12324 (st12324(madf-9::TY1::EGFP::3xFLAG] IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-9

value: not applicable

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS329VQW at ENCODE; https://www.encodeproject.org/ENCBS329VQW/


title: TF ChIP-seq from whole organism (ENCLB885VNE)

description:
https://www.encodeproject.org/experiments/ENCSR985TNB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR985TNB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR195UPC
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB885VNE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: foxo

value: D. mel line contraining an intronic eGFP exon to create a foxo-GFP fusion gene

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS750VJX at ENCODE; https://www.encodeproject.org/ENCBS750VJX/


title: TF ChIP-seq from whole organism (ENCLB877NWG)

description:
https://www.encodeproject.org/experiments/ENCSR254SSJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L2 larva worms.
experiment encode accession: ENCSR254SSJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR650IGG
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB877NWG
size range: 150-350

value: whole organism

value: whole organisms

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS878FYE at ENCODE; https://www.encodeproject.org/ENCBS878FYE/


title: TF ChIP-seq from whole organism (ENCLB358DKI)

description:
https://www.encodeproject.org/experiments/ENCSR486MQI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11398-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR486MQI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR826JGA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB358DKI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11398-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG11398

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11398

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS414JPQ at ENCODE; https://www.encodeproject.org/ENCBS414JPQ/


title: TF ChIP-seq from whole organism (ENCLB606HEZ)

description:
https://www.encodeproject.org/experiments/ENCSR147WAA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing snpc-1.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR147WAA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR498NSZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB606HEZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12251 (st12251[snpc-1.2::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans snpc-1.2

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS765FHC at ENCODE; https://www.encodeproject.org/ENCBS765FHC/


title: TF ChIP-seq from whole organism (ENCLB739HJV)

description:
https://www.encodeproject.org/experiments/ENCSR151DAG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR151DAG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR621SAX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB739HJV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS086UAD at ENCODE; https://www.encodeproject.org/ENCBS086UAD/


title: TF ChIP-seq from whole organism (ENCLB159UKG)

description:
https://www.encodeproject.org/experiments/ENCSR147WAA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing snpc-1.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR147WAA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR498NSZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB159UKG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS887EDA at ENCODE; https://www.encodeproject.org/ENCBS887EDA/


title: TF ChIP-seq from whole organism (ENCLB229INF)

description:
https://www.encodeproject.org/experiments/ENCSR486MQI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11398-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR486MQI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR826JGA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB229INF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: pooled male and female

value: Kevin White, UChicago

value: ENCBS655FAZ at ENCODE; https://www.encodeproject.org/ENCBS655FAZ/


title: Control ChIP-seq from whole organism (ENCLB941DWP)

description:
https://www.encodeproject.org/experiments/ENCSR146XXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lim-7-eGFP fusion proteins.
experiment encode accession: ENCSR146XXJ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB941DWP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP779 (wgIs779(lim-7::TY1 EGFP 3xFLAG(P000007_A03_13C13);unc-119(+));unc-119 (tm4063)) L4 larva (48.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans lim-7

value: 48.5 hour

value: ENCBS051OIO at ENCODE; https://www.encodeproject.org/ENCBS051OIO/


title: TF ChIP-seq from whole organism (ENCLB139JAX)

description:
https://www.encodeproject.org/experiments/ENCSR252BZF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against rpc-1 in young adult worms.
experiment encode accession: ENCSR252BZF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR959KFB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB139JAX
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex young adult whole organism

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS115SME at ENCODE; https://www.encodeproject.org/ENCBS115SME/


title: TF ChIP-seq from whole organism (ENCLB148IQH)

description:
https://www.encodeproject.org/experiments/ENCSR252BZF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against rpc-1 in young adult worms.
experiment encode accession: ENCSR252BZF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR959KFB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB148IQH
size range: 150-350

value: ENCBS780CBM at ENCODE; https://www.encodeproject.org/ENCBS780CBM/


title: TF ChIP-seq from whole organism (ENCLB954FUK)

description:
https://www.encodeproject.org/experiments/ENCSR811GFT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets65A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR811GFT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR310QLH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB954FUK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ets3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Ets65A

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets65A

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS533ZIX at ENCODE; https://www.encodeproject.org/ENCBS533ZIX/


title: TF ChIP-seq from whole organism (ENCLB236XFD)

description:
https://www.encodeproject.org/experiments/ENCSR092GCN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L3 larva worms.
experiment encode accession: ENCSR092GCN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056FAL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB236XFD
size range: 150-350

source_name: Caenorhabditis elegans strain OP304 (unc-119(ed3) III; wgIs304) mixed sex L3 larva insertion targeting C. elegans fos-1

value: whole organism

value: whole organisms

value: not applicable

value: L3 larva

value: ENCBS759PQH at ENCODE; https://www.encodeproject.org/ENCBS759PQH/


title: TF ChIP-seq from whole organism (ENCLB466ZJS)

description:
https://www.encodeproject.org/experiments/ENCSR146VGX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing unc-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR146VGX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR556EFG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB466ZJS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12259 (st12259[unc-3::TY1::EGFP::3xFLAG] II) late embryo (2.5 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans unc-3

value: not collected

value: late embryonic

value: 2.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS663IFA at ENCODE; https://www.encodeproject.org/ENCBS663IFA/


title: Control ChIP-seq from whole organism (ENCLB369BKR)

description:
https://www.encodeproject.org/experiments/ENCSR316HUP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nfyb-1-eGFP fusion proteins.
experiment encode accession: ENCSR316HUP
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB369BKR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12190 (st12190[nfyb-1::TY1::EGFP::3xFLAG] II) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans nfyb-1

value: young adult

value: 65 hour

value: L1 larva starved after bleaching

value: ENCBS647ZTL at ENCODE; https://www.encodeproject.org/ENCBS647ZTL/


title: TF ChIP-seq from whole organism (ENCLB368JXR)

description:
https://www.encodeproject.org/experiments/ENCSR146VGX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing unc-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR146VGX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR556EFG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB368JXR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS493IJE at ENCODE; https://www.encodeproject.org/ENCBS493IJE/


title: Control ChIP-seq from whole organism (ENCLB325WII)

description:
https://www.encodeproject.org/experiments/ENCSR227QMC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F39B2.1-eGFP fusion proteins.
experiment encode accession: ENCSR227QMC
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB325WII
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12232 (st12232[F39B2.1::TY1::EGFP::3xFLAG] I) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hinf-1

value: whole organism

value: ENCBS688TTB at ENCODE; https://www.encodeproject.org/ENCBS688TTB/


title: TF ChIP-seq from whole organism (ENCLB556ELG)

description:
https://www.encodeproject.org/experiments/ENCSR092GCN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L3 larva worms.
experiment encode accession: ENCSR092GCN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056FAL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB556ELG
size range: 150-350

value: whole organisms

value: not applicable

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS392WQH at ENCODE; https://www.encodeproject.org/ENCBS392WQH/


title: TF ChIP-seq from whole organism (ENCLB529MOB)

description:
https://www.encodeproject.org/experiments/ENCSR811GFT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets65A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR811GFT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR310QLH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB529MOB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets65A

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS479BME at ENCODE; https://www.encodeproject.org/ENCBS479BME/


title: TF ChIP-seq from whole organism (ENCLB730PFV)

description:
https://www.encodeproject.org/experiments/ENCSR142MKF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbx-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR142MKF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR763DCS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB730PFV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP368 (wgIs368(tbx-11:TY1 EGFP 3xFLAG(trimmed fosmids_A01);unc-119(+));unc-119(tm4063)) early embryo (1 hour) using egg bleaching insertion targeting C. elegans tbx-11

value: not collected

value: early embryonic

value: 1 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS772RWJ at ENCODE; https://www.encodeproject.org/ENCBS772RWJ/


title: TF ChIP-seq from whole organism (ENCLB305ZEY)

description:
https://www.encodeproject.org/experiments/ENCSR142MKF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbx-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR142MKF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR763DCS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB305ZEY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

value: ENCBS369WPE at ENCODE; https://www.encodeproject.org/ENCBS369WPE/


title: Control ChIP-seq from whole organism (ENCLB417JLC)

description:
https://www.encodeproject.org/experiments/ENCSR218CPY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing scrt-1-eGFP fusion proteins.
experiment encode accession: ENCSR218CPY
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB417JLC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP802 (wgIs802(scrt-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0089_1F10);unc-119(+));unc-119 (tm4063)) early embryo (2 hours) using egg bleaching insertion targeting C. elegans scrt-1

value: 2 hour

value: ENCBS065BRN at ENCODE; https://www.encodeproject.org/ENCBS065BRN/


title: Control ChIP-seq from whole organism (ENCLB370GMA)

description:
https://www.encodeproject.org/experiments/ENCSR137VPX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-6-eGFP fusion proteins.
experiment encode accession: ENCSR137VPX
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB370GMA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12301 (st12301[ztf-6::TY1::EGFP::3xFLAG] I) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-6

value: young adult

value: 62 hour

value: L1 larva starved after bleaching

value: ENCBS250ULD at ENCODE; https://www.encodeproject.org/ENCBS250ULD/


title: TF ChIP-seq from whole organism (ENCLB754MSY)

description:
https://www.encodeproject.org/experiments/ENCSR091FUG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L3 larva worms.
experiment encode accession: ENCSR091FUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR796BPI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB754MSY
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L3 larva insertion targeting C. elegans unc-62

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS015TAT at ENCODE; https://www.encodeproject.org/ENCBS015TAT/


title: TF ChIP-seq from whole organism (ENCLB640PMJ)

description:
https://www.encodeproject.org/experiments/ENCSR037OBG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F44E2.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR037OBG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR095DUV
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB640PMJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP381 (wgIs381(F44E2.7::TY1 EGFP 3xFLAG(P000012_B04);unc-119(+);unc-119(tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F44E2.7

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS511LNG at ENCODE; https://www.encodeproject.org/ENCBS511LNG/


title: TF ChIP-seq from whole organism (ENCLB192JQM)

description:
https://www.encodeproject.org/experiments/ENCSR091KQX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-30-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR091KQX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR128QIX
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB192JQM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite late embryo insertion targeting C. elegans hlh-30

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30

value: hermaphrodite

value: late embryonic

value: ENCBS938ASC at ENCODE; https://www.encodeproject.org/ENCBS938ASC/


title: TF ChIP-seq from whole organism (ENCLB088AUF)

description:
https://www.encodeproject.org/experiments/ENCSR810MQU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Bteb2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR810MQU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR142WLZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB088AUF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Bteb2-GFP mixed sex embryo (4-20 hours) insertion targeting D. melanogaster Klf15

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bteb2

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS085WKR at ENCODE; https://www.encodeproject.org/ENCBS085WKR/


title: TF ChIP-seq from whole organism (ENCLB555UYT)

description:
https://www.encodeproject.org/experiments/ENCSR310EQN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-28-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR310EQN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR247HDL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB555UYT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12281 (st12281[ztf-28 ::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-28

value: not collected

value: young adult

value: 63 hour

value: L1 larva starved after bleaching

value: ENCBS845WDT at ENCODE; https://www.encodeproject.org/ENCBS845WDT/


title: TF ChIP-seq from whole organism (ENCLB156GER)

description:
https://www.encodeproject.org/experiments/ENCSR091KQX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-30-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR091KQX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR128QIX
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB156GER
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS673MCX at ENCODE; https://www.encodeproject.org/ENCBS673MCX/


title: Control ChIP-seq from whole organism (ENCLB386OAN)

description:
https://www.encodeproject.org/experiments/ENCSR138QCE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-58-eGFP fusion proteins.
experiment encode accession: ENCSR138QCE
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB386OAN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP808 (wgIs808(ceh-58::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0091_2F06);unc-119(+));unc-119 (tm4063)) young adult (65 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-58

value: not applicable

value: 65 hour

value: ENCBS917RME at ENCODE; https://www.encodeproject.org/ENCBS917RME/


title: TF ChIP-seq from whole organism (ENCLB501FJD)

description:
https://www.encodeproject.org/experiments/ENCSR091FUG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L3 larva worms.
experiment encode accession: ENCSR091FUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR796BPI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB501FJD
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS955NNU at ENCODE; https://www.encodeproject.org/ENCBS955NNU/


title: TF ChIP-seq from whole organism (ENCLB644NJK)

description:
https://www.encodeproject.org/experiments/ENCSR214ITF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pha-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR214ITF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR863LHP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB644NJK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12220 (st12220[pha-4::TY1::EGFP::3xFLAG] V) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans pha-4

value: not collected

value: L4 larva

value: 48 hour

value: ENCBS974CIE at ENCODE; https://www.encodeproject.org/ENCBS974CIE/


title: Control ChIP-seq from whole organism (ENCLB619NTA)

description:
https://www.encodeproject.org/experiments/ENCSR347VEI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR347VEI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB619NTA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: L2 larva

value: ENCBS739HTO at ENCODE; https://www.encodeproject.org/ENCBS739HTO/


title: TF ChIP-seq from whole organism (ENCLB939JXD)

description:
https://www.encodeproject.org/experiments/ENCSR310EQN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-28-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR310EQN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR247HDL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB939JXD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS612QPZ at ENCODE; https://www.encodeproject.org/ENCBS612QPZ/


title: TF ChIP-seq from whole organism (ENCLB144OON)

description:
https://www.encodeproject.org/experiments/ENCSR135QZY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing set-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR135QZY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR477IRP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB144OON
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12223 (st12223[set-16::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans set-16

value: ENCBS400XPF at ENCODE; https://www.encodeproject.org/ENCBS400XPF/


title: TF ChIP-seq from whole organism (ENCLB098XAV)

description:
https://www.encodeproject.org/experiments/ENCSR811GFT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets65A-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR811GFT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR310QLH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB098XAV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ets3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Ets65A

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets65A

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS747BIY at ENCODE; https://www.encodeproject.org/ENCBS747BIY/


title: TF ChIP-seq from whole organism (ENCLB085VHN)

description:
https://www.encodeproject.org/experiments/ENCSR810MQU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Bteb2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR810MQU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR142WLZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB085VHN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bteb2

value: ENCBS265CWX at ENCODE; https://www.encodeproject.org/ENCBS265CWX/


title: TF ChIP-seq from whole organism (ENCLB319QJF)

description:
https://www.encodeproject.org/experiments/ENCSR215VAE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing vab-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR215VAE
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR530KZU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB319QJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12267 (st12267[vab-7::TY1::EGFP::3xFLAG] III) L4 larva (47 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans vab-7

value: not applicable

value: not collected

value: L4 larva

value: 47 hour

value: ENCBS682IJX at ENCODE; https://www.encodeproject.org/ENCBS682IJX/


title: Control ChIP-seq from whole organism (ENCLB860GGD)

description:
https://www.encodeproject.org/experiments/ENCSR347VEI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR347VEI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB860GGD
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS470KFW at ENCODE; https://www.encodeproject.org/ENCBS470KFW/


title: TF ChIP-seq from whole organism (ENCLB232OZG)

description:
https://www.encodeproject.org/experiments/ENCSR091FUG/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L3 larva worms.
experiment encode accession: ENCSR091FUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR796BPI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB232OZG
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: L3 larva

value: ENCBS238NBO at ENCODE; https://www.encodeproject.org/ENCBS238NBO/


title: TF ChIP-seq from whole organism (ENCLB902ZFM)

description:
https://www.encodeproject.org/experiments/ENCSR485SST/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets97D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR485SST
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR935TKK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB902ZFM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Delg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Ets97D

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets97D

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS964VDM at ENCODE; https://www.encodeproject.org/ENCBS964VDM/


title: TF ChIP-seq from whole organism (ENCLB110UEA)

description:
https://www.encodeproject.org/experiments/ENCSR485SST/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets97D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR485SST
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR935TKK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB110UEA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS880YNL at ENCODE; https://www.encodeproject.org/ENCBS880YNL/


title: TF ChIP-seq from whole organism (ENCLB643ZRZ)

description:
https://www.encodeproject.org/experiments/ENCSR484YRI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dl-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR484YRI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR450VEA
encode release date: 2018-07-09
lab: Kevin White, UChicago
library encode accession: ENCLB643ZRZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-275

source_name: Drosophila melanogaster strain dl-small-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dl

value: dl

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dl-RC

value: wandering third instar larva

value: unknown

value: ENCBS339DQQ at ENCODE; https://www.encodeproject.org/ENCBS339DQQ/


title: Control ChIP-seq from whole organism (ENCLB980JVF)

description:
https://www.encodeproject.org/experiments/ENCSR090ETP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 worms.
experiment encode accession: ENCSR090ETP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB980JVF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L1 larva insertion targeting C. elegans egl-27

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS847NTC at ENCODE; https://www.encodeproject.org/ENCBS847NTC/


title: TF ChIP-seq from whole organism (ENCLB038QRN)

description:
https://www.encodeproject.org/experiments/ENCSR978CMG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing esn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR978CMG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR602FMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB038QRN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain esn-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster esn

value: esn

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to esn

value: prepupa

tag: fly synchronization stage

value: white prepupa

value: ENCBS617RPN at ENCODE; https://www.encodeproject.org/ENCBS617RPN/


title: TF ChIP-seq from whole organism (ENCLB863CKN)

description:
https://www.encodeproject.org/experiments/ENCSR215VAE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing vab-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR215VAE
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR530KZU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB863CKN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: L4 larva

value: 47 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS246JNX at ENCODE; https://www.encodeproject.org/ENCBS246JNX/


title: TF ChIP-seq from whole organism (ENCLB392JFM)

description:
https://www.encodeproject.org/experiments/ENCSR485SST/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ets97D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR485SST
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR935TKK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB392JFM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets97D

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS684YFD at ENCODE; https://www.encodeproject.org/ENCBS684YFD/


title: TF ChIP-seq from whole organism (ENCLB842ACS)

description:
https://www.encodeproject.org/experiments/ENCSR206HUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR206HUJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR557XRC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB842ACS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RJP5356 (rp168(dmd-6::GFP::AID::TEV::3xFLAG) IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans dmd-6

value: whole organism

value: whole organisms

value: 48 hour

value: ENCBS896TAN at ENCODE; https://www.encodeproject.org/ENCBS896TAN/


title: TF ChIP-seq from whole organism (ENCLB038YHV)

description:
https://www.encodeproject.org/experiments/ENCSR032EGI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mab-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032EGI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR481MQX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB038YHV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12257 (st12257[mab-9::TY1::EGFP::3xFLAG] II) L1 larva (6 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mab-9

value: not applicable

value: not collected

value: L1 larva

value: 6 hour

value: ENCBS781ZGW at ENCODE; https://www.encodeproject.org/ENCBS781ZGW/


title: TF ChIP-seq from whole organism (ENCLB178DXL)

description:
https://www.encodeproject.org/experiments/ENCSR037OBG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F44E2.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR037OBG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR095DUV
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB178DXL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS460QRH at ENCODE; https://www.encodeproject.org/ENCBS460QRH/


title: TF ChIP-seq from whole organism (ENCLB053QMO)

description:
https://www.encodeproject.org/experiments/ENCSR476OSZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing NC2alpha-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR476OSZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR097GQQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB053QMO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain NC2alpha-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster NC2alpha

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NC2alpha

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS780NDZ at ENCODE; https://www.encodeproject.org/ENCBS780NDZ/


title: TF ChIP-seq from whole organism (ENCLB057UEK)

description:
https://www.encodeproject.org/experiments/ENCSR206HUJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR206HUJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR557XRC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB057UEK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: 48 hour

value: ENCBS158HNJ at ENCODE; https://www.encodeproject.org/ENCBS158HNJ/


title: TF ChIP-seq from whole organism (ENCLB299CAH)

description:
https://www.encodeproject.org/experiments/ENCSR214ITF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pha-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR214ITF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR863LHP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB299CAH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: ENCBS743ZLZ at ENCODE; https://www.encodeproject.org/ENCBS743ZLZ/


title: TF ChIP-seq from whole organism (ENCLB913VCK)

description:
https://www.encodeproject.org/experiments/ENCSR672VJL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4617-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR672VJL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR178PAG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB913VCK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4617-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG4617

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4617

value: Kevin White

value: ENCBS750UUN at ENCODE; https://www.encodeproject.org/ENCBS750UUN/


title: TF ChIP-seq from whole organism (ENCLB852XTD)

description:
https://www.encodeproject.org/experiments/ENCSR132ADK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ekl-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR132ADK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR113ROD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB852XTD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12207 (st12207[ekl-4::TY1::EGFP::3xFLAG] I) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ekl-4

value: young adult

value: 65 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS443DBY at ENCODE; https://www.encodeproject.org/ENCBS443DBY/


title: TF ChIP-seq from whole organism (ENCLB272SHH)

description:
https://www.encodeproject.org/experiments/ENCSR135QZY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing set-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR135QZY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR477IRP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB272SHH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: L4 larva

value: ENCBS144DTP at ENCODE; https://www.encodeproject.org/ENCBS144DTP/


title: TF ChIP-seq from whole organism (ENCLB207MBC)

description:
https://www.encodeproject.org/experiments/ENCSR484YRI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dl-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR484YRI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR450VEA
encode release date: 2018-07-09
lab: Kevin White, UChicago
library encode accession: ENCLB207MBC
fragmentation methods: sonication (Bioruptor generic)
size range: 175-275

value: dl

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dl-RC

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: ENCBS050EJV at ENCODE; https://www.encodeproject.org/ENCBS050EJV/


title: Control ChIP-seq from whole organism (ENCLB616JJE)

description:
https://www.encodeproject.org/experiments/ENCSR133XXV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-23-eGFP fusion proteins.
experiment encode accession: ENCSR133XXV
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB616JJE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12279 (st12279[ztf-23 ::TY1::EGFP::3xFLAG] I) midembryo (1.5 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-23

value: not applicable

value: not collected

value: midembryonic

value: 1.5 hour

value: egg bleaching

value: ENCBS504EHN at ENCODE; https://www.encodeproject.org/ENCBS504EHN/


title: TF ChIP-seq from whole organism (ENCLB048EHB)

description:
https://www.encodeproject.org/experiments/ENCSR091FUG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L3 larva worms.
experiment encode accession: ENCSR091FUG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR796BPI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB048EHB
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L3 larva insertion targeting C. elegans unc-62

value: L3 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS981SAD at ENCODE; https://www.encodeproject.org/ENCBS981SAD/


title: TF ChIP-seq from whole organism (ENCLB378ZZM)

description:
https://www.encodeproject.org/experiments/ENCSR133GXL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR133GXL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR972WMG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB378ZZM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP791 (wgIs791(nhr-19::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0090_5D05);unc-119(+));unc-119 (tm4063)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-19

value: whole organism

value: whole organisms

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS868MKT at ENCODE; https://www.encodeproject.org/ENCBS868MKT/


title: TF ChIP-seq from whole organism (ENCLB754HGD)

description:
https://www.encodeproject.org/experiments/ENCSR294DOU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing aptf-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR294DOU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR652SHU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB754HGD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12304 (st12304[aptf-2::TY1::EGFP::3xFLAG] IV) young adult (61.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans aptf-2

value: not applicable

value: not collected

value: young adult

value: 61.5 hour

value: ENCBS670JBI at ENCODE; https://www.encodeproject.org/ENCBS670JBI/


title: TF ChIP-seq from whole organism (ENCLB586KTN)

description:
https://www.encodeproject.org/experiments/ENCSR294DOU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing aptf-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR294DOU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR652SHU
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB586KTN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS575IJW at ENCODE; https://www.encodeproject.org/ENCBS575IJW/


title: Control ChIP-seq from whole organism (ENCLB268KXO)

description:
https://www.encodeproject.org/experiments/ENCSR480EZU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing shn-eGFP fusion proteins.
experiment encode accession: ENCSR480EZU
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB268KXO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster shn

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to shn

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS901HCB at ENCODE; https://www.encodeproject.org/ENCBS901HCB/


title: TF ChIP-seq from whole organism (ENCLB742QBJ)

description:
https://www.encodeproject.org/experiments/ENCSR805JGA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing btn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR805JGA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR247VJD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB742QBJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain btn-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster btn

value: btn

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to btn

value: 0-14 hour

value: ENCBS751JLE at ENCODE; https://www.encodeproject.org/ENCBS751JLE/


title: TF ChIP-seq from whole organism (ENCLB613GZB)

description:
https://www.encodeproject.org/experiments/ENCSR133GXL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR133GXL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR972WMG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB613GZB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS431NWW at ENCODE; https://www.encodeproject.org/ENCBS431NWW/


title: Control ChIP-seq from whole organism (ENCLB383BRH)

description:
https://www.encodeproject.org/experiments/ENCSR090ETP/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 worms.
experiment encode accession: ENCSR090ETP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB383BRH
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS171YJO at ENCODE; https://www.encodeproject.org/ENCBS171YJO/


title: TF ChIP-seq from whole organism (ENCLB467LEN)

description:
https://www.encodeproject.org/experiments/ENCSR307OHT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing egl-44-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR307OHT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR027CZW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB467LEN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12173 (st12173[egl-44::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (66.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. ele...

value: whole organism

value: whole organisms

value: young adult

value: 66.5 hour

value: ENCBS416LHQ at ENCODE; https://www.encodeproject.org/ENCBS416LHQ/


title: TF ChIP-seq from whole organism (ENCLB078CDO)

description:
https://www.encodeproject.org/experiments/ENCSR307OHT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing egl-44-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR307OHT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR027CZW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB078CDO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: ENCBS023CGY at ENCODE; https://www.encodeproject.org/ENCBS023CGY/


title: Control ChIP-seq from whole organism (ENCLB758AWJ)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 4
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB758AWJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans unc-62

value: L4 larva

value: ENCBS790SIM at ENCODE; https://www.encodeproject.org/ENCBS790SIM/


title: TF ChIP-seq from whole organism (ENCLB839HEL)

description:
https://www.encodeproject.org/experiments/ENCSR032EGI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mab-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032EGI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR481MQX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB839HEL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS423UQA at ENCODE; https://www.encodeproject.org/ENCBS423UQA/


title: Control ChIP-seq from whole organism (ENCLB257GRP)

description:
https://www.encodeproject.org/experiments/ENCSR090ETP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 worms.
experiment encode accession: ENCSR090ETP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB257GRP
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS262VEJ at ENCODE; https://www.encodeproject.org/ENCBS262VEJ/


title: TF ChIP-seq from whole organism (ENCLB093KVP)

description:
https://www.encodeproject.org/experiments/ENCSR978CMG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing esn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR978CMG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR602FMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB093KVP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: esn

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to esn

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS284SMM at ENCODE; https://www.encodeproject.org/ENCBS284SMM/


title: Control ChIP-seq from whole organism (ENCLB832BBB)

description:
https://www.encodeproject.org/experiments/ENCSR346UOK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR346UOK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB832BBB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL521 (unc-119(ed3) III; vrIs117 [pPIE-1::LIN-35:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)])) mixed sex young adult insertion targeting C. elegans lin-35

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-35

value: young adult

value: ENCBS609OFT at ENCODE; https://www.encodeproject.org/ENCBS609OFT/


title: Control ChIP-seq from whole organism (ENCLB223DQG)

description:
https://www.encodeproject.org/experiments/ENCSR346UOK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR346UOK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB223DQG
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: unknown

value: ENCBS479PEH at ENCODE; https://www.encodeproject.org/ENCBS479PEH/


title: Control ChIP-seq from whole organism (ENCLB275AJM)

description:
https://www.encodeproject.org/experiments/ENCSR204AYA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing tag-97-eGFP fusion proteins.
experiment encode accession: ENCSR204AYA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB275AJM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP719 (wgIs719(tag-97::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0090_5G12);unc-119(+));unc-119 (tm4063)) L4 larva (66 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans svh-5

value: not collected

value: L4 larva

value: 66 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS141DTW at ENCODE; https://www.encodeproject.org/ENCBS141DTW/


title: Control ChIP-seq from whole organism (ENCLB666TIH)

description:
https://www.encodeproject.org/experiments/ENCSR802IDG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sima-RB-eGFP fusion proteins.
experiment encode accession: ENCSR802IDG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB666TIH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sima-RB-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster sima

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sima-RB

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS268FWN at ENCODE; https://www.encodeproject.org/ENCBS268FWN/


title: TF ChIP-seq from whole organism (ENCLB238NYS)

description:
https://www.encodeproject.org/experiments/ENCSR132ADK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ekl-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR132ADK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR113ROD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB238NYS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: young adult

value: 65 hour

value: ENCBS010LFK at ENCODE; https://www.encodeproject.org/ENCBS010LFK/


title: TF ChIP-seq from whole organism (ENCLB609RVT)

description:
https://www.encodeproject.org/experiments/ENCSR028HCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR028HCJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR474TMQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB609RVT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12308 (st12308(madf-5::TY1::EGFP::3xFLAG] II) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans madf-5

value: not collected

value: L4 larva

value: 48 hour

value: ENCBS103DLF at ENCODE; https://www.encodeproject.org/ENCBS103DLF/


title: TF ChIP-seq from whole organism (ENCLB538ZOW)

description:
https://www.encodeproject.org/experiments/ENCSR671XAK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR671XAK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR782YFF
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB538ZOW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m3-HLH-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(spl)m3-HLH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m3

value: pooled male and female

value: Kevin White

value: ENCBS621DLT at ENCODE; https://www.encodeproject.org/ENCBS621DLT/


title: Control ChIP-seq from whole organism (ENCLB097SRJ)

description:
https://www.encodeproject.org/experiments/ENCSR288MSH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing tbx-37-eGFP fusion proteins.
experiment encode accession: ENCSR288MSH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB097SRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12282 (st12282[tbx-37 ::TY1::EGFP::3xFLAG] III) early embryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans tbx-37

value: whole organism

value: whole organisms

value: not applicable

value: early embryonic

value: 0 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS715NHH at ENCODE; https://www.encodeproject.org/ENCBS715NHH/


title: TF ChIP-seq from whole organism (ENCLB017KVC)

description:
https://www.encodeproject.org/experiments/ENCSR028HCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR028HCJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR474TMQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB017KVC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L1 larva starved after bleaching

value: ENCBS775LZO at ENCODE; https://www.encodeproject.org/ENCBS775LZO/


title: Control ChIP-seq from whole organism (ENCLB661RIK)

description:
https://www.encodeproject.org/experiments/ENCSR346GYL/
***************
biological replicate number: 5
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR346GYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB661RIK
fragmentation methods: sonication (generic microtip)

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS185OFR at ENCODE; https://www.encodeproject.org/ENCBS185OFR/


title: Control ChIP-seq from whole organism (ENCLB145JWV)

description:
https://www.encodeproject.org/experiments/ENCSR021PTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y95B8A.8-eGFP fusion proteins.
experiment encode accession: ENCSR021PTZ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB145JWV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12277 (st12277[Y95B8A.8 ::TY1::EGFP::3xFLAG] I) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y95B8A.8

value: whole organism

value: young adult

value: 63 hour

value: ENCBS779YZC at ENCODE; https://www.encodeproject.org/ENCBS779YZC/