title: TF ChIP-seq from whole organism (ENCLB397IMG)

description:
https://www.encodeproject.org/experiments/ENCSR517OKI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-W03F9.2 in worms.
experiment encode accession: ENCSR517OKI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR729ROL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB397IMG
size range: 150-350

source_name: Caenorhabditis elegans strain OP215 (unc-119(ed3) III; wgIs215) mixed sex L4/young adult insertion targeting C. elegans W03F9.2

value: L4/young adult

value: CGC

value: ENCBS197UCS at ENCODE; https://www.encodeproject.org/ENCBS197UCS/


title: TF ChIP-seq from whole organism (ENCLB182BGE)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR518QIC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-mab-5 in L2 larva worms.
experiment encode accession: ENCSR518QIC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR269UEF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB182BGE
size range: 150-350

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP27 (unc-119(ed3) III; wgIs27) mixed sex L2 larva insertion targeting C. elegans mab-5

extract_protocol: not provided

tag: antibody

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: Sex

value: pooled male and female

tag: dev stage

value: L2 larva

tag: age

value: unknown

tag: lab

value: Michael Snyder, Stanford

tag: source

tag: link

value: ENCBS290UYK at ENCODE; https://www.encodeproject.org/ENCBS290UYK/


title: TF ChIP-seq from whole organism (ENCLB526AOF)

description:
https://www.encodeproject.org/experiments/ENCSR835GPX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zfh-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR835GPX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR150SBQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB526AOF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12167 (st12167[zfh-2::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (64.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. eleg...

value: not collected

value: young adult

value: 64.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS176DWX at ENCODE; https://www.encodeproject.org/ENCBS176DWX/


title: TF ChIP-seq from whole organism (ENCLB539MYT)

description:
https://www.encodeproject.org/experiments/ENCSR518QIC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mab-5 in L2 larva worms.
experiment encode accession: ENCSR518QIC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR269UEF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB539MYT
size range: 150-350

value: CGC

value: ENCBS724DXD at ENCODE; https://www.encodeproject.org/ENCBS724DXD/


title: TF ChIP-seq from whole organism (ENCLB773XEY)

description:
https://www.encodeproject.org/experiments/ENCSR835GPX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zfh-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR835GPX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR150SBQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB773XEY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS678IGE at ENCODE; https://www.encodeproject.org/ENCBS678IGE/


title: Control ChIP-seq from whole organism (ENCLB330TWR)

description:
https://www.encodeproject.org/experiments/ENCSR517BBL/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR517BBL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB330TWR
size range: 150-350

source_name: Caenorhabditis elegans strain OP318 (unc-119(ed3) III; wgIs318) mixed sex L2 larva insertion targeting C. elegans nhr-12

value: whole organisms

value: not applicable

value: ENCBS994HEA at ENCODE; https://www.encodeproject.org/ENCBS994HEA/


title: Control ChIP-seq from whole organism (ENCLB115EKC)

description:
https://www.encodeproject.org/experiments/ENCSR517BBL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR517BBL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB115EKC
size range: 150-350

value: pooled male and female

value: L2 larva

value: unknown

value: ENCBS721BEC at ENCODE; https://www.encodeproject.org/ENCBS721BEC/


title: Control ChIP-seq from whole organism (ENCLB107TPR)

description:
https://www.encodeproject.org/experiments/ENCSR831TIJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR831TIJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB107TPR
size range: 150-350

source_name: Caenorhabditis elegans strain OP174 (unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)) mixed sex L1 larva insertion targeting C. elegans ces-1

value: L1 larva

value: Michael Snyder, Stanford

value: ENCBS742XTN at ENCODE; https://www.encodeproject.org/ENCBS742XTN/


title: TF ChIP-seq from whole organism (ENCLB342OLM)

description:
https://www.encodeproject.org/experiments/ENCSR513NQL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L4 larva worms.
experiment encode accession: ENCSR513NQL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR077JEX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB342OLM
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L4 larva insertion targeting C. elegans snpc-4

value: L4 larva

value: ENCBS757FWB at ENCODE; https://www.encodeproject.org/ENCBS757FWB/


title: Control ChIP-seq from whole organism (ENCLB548KRH)

description:
https://www.encodeproject.org/experiments/ENCSR831TIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR831TIJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB548KRH
size range: 150-350

value: ENCBS463QQS at ENCODE; https://www.encodeproject.org/ENCBS463QQS/


title: Control ChIP-seq from whole organism (ENCLB098HID)

description:
https://www.encodeproject.org/experiments/ENCSR829JUS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR829JUS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB098HID
size range: 150-350

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L1 larva insertion targeting C. elegans lin-15B

value: CGC

value: ENCBS615QQN at ENCODE; https://www.encodeproject.org/ENCBS615QQN/


title: TF ChIP-seq from whole organism (ENCLB637UDC)

description:
https://www.encodeproject.org/experiments/ENCSR517OKI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-W03F9.2 in worms.
experiment encode accession: ENCSR517OKI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR729ROL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB637UDC
size range: 150-350

value: whole organism

value: L4/young adult

value: ENCBS361TUA at ENCODE; https://www.encodeproject.org/ENCBS361TUA/


title: TF ChIP-seq from whole organism (ENCLB255DUT)

description:
https://www.encodeproject.org/experiments/ENCSR828UDP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR828UDP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR086RZO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB255DUT
size range: 150-350

source_name: Caenorhabditis elegans strain OP228 (unc-119(ed3) III; wgIs228) mixed sex mixed stage (embryo) insertion targeting C. elegans nhr-237

value: whole organisms

value: not applicable

value: mixed stage (embryonic)

value: ENCBS391XKP at ENCODE; https://www.encodeproject.org/ENCBS391XKP/


title: TF ChIP-seq from whole organism (ENCLB536XOZ)

description:
https://www.encodeproject.org/experiments/ENCSR513NQL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L4 larva worms.
experiment encode accession: ENCSR513NQL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR077JEX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB536XOZ
size range: 150-350

value: pooled male and female

value: unknown

value: ENCBS923LJW at ENCODE; https://www.encodeproject.org/ENCBS923LJW/


title: Control ChIP-seq from whole organism (ENCLB881AUN)

description:
https://www.encodeproject.org/experiments/ENCSR829JUS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR829JUS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB881AUN
size range: 150-350

value: L1 larva

value: Michael Snyder, Stanford

value: ENCBS334GTH at ENCODE; https://www.encodeproject.org/ENCBS334GTH/


title: Control ChIP-seq from whole organism (ENCLB891YJG)

description:
https://www.encodeproject.org/experiments/ENCSR510LKT/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR510LKT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB891YJG
size range: 150-350

source_name: Caenorhabditis elegans strain OP102 (unc-119(tm4063) III; wgIs102) mixed sex L4 larva insertion targeting C. elegans mep-1

value: L4 larva

value: ENCBS072JPP at ENCODE; https://www.encodeproject.org/ENCBS072JPP/


title: Control ChIP-seq from whole organism (ENCLB943ICY)

description:
https://www.encodeproject.org/experiments/ENCSR829JUS/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR829JUS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB943ICY
fragmentation methods: sonication (generic microtip)

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-15B

value: Michael Snyder

value: ENCBS827WDS at ENCODE; https://www.encodeproject.org/ENCBS827WDS/


title: TF ChIP-seq from whole organism (ENCLB266BNS)

description:
https://www.encodeproject.org/experiments/ENCSR509XOC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ama-1 in young adult worms.
experiment encode accession: ENCSR509XOC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR142DMI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB266BNS
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex young adult whole organism

value: whole organism

value: young adult

value: CGC

value: ENCBS762YAV at ENCODE; https://www.encodeproject.org/ENCBS762YAV/


title: Control ChIP-seq from whole organism (ENCLB483PNA)

description:
https://www.encodeproject.org/experiments/ENCSR510LKT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR510LKT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB483PNA
size range: 150-350

value: whole organisms

value: not applicable

value: ENCBS560BPO at ENCODE; https://www.encodeproject.org/ENCBS560BPO/


title: TF ChIP-seq from whole organism (ENCLB435JVL)

description:
https://www.encodeproject.org/experiments/ENCSR828UDP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-237 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR828UDP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR086RZO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB435JVL
size range: 150-350

value: pooled male and female

value: mixed stage (embryonic)

value: unknown

value: ENCBS120OOY at ENCODE; https://www.encodeproject.org/ENCBS120OOY/


title: Control ChIP-seq from whole organism (ENCLB225SMX)

description:
https://www.encodeproject.org/experiments/ENCSR509HPC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR509HPC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB225SMX
size range: 150-350

source_name: Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L4 larva insertion targeting C. elegans zag-1

value: Michael Snyder, Stanford

value: ENCBS910DKO at ENCODE; https://www.encodeproject.org/ENCBS910DKO/


title: Control ChIP-seq from whole organism (ENCLB281EQP)

description:
https://www.encodeproject.org/experiments/ENCSR509HPC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR509HPC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB281EQP
size range: 150-350

value: L4 larva

value: ENCBS115CLS at ENCODE; https://www.encodeproject.org/ENCBS115CLS/


title: TF ChIP-seq from whole organism (ENCLB454OOJ)

description:
https://www.encodeproject.org/experiments/ENCSR509XOC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ama-1 in young adult worms.
experiment encode accession: ENCSR509XOC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR142DMI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB454OOJ
size range: 150-350

value: ENCBS781IYB at ENCODE; https://www.encodeproject.org/ENCBS781IYB/


title: TF ChIP-seq from whole organism (ENCLB638SBZ)

description:
https://www.encodeproject.org/experiments/ENCSR506XPT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L2 larva worms.
experiment encode accession: ENCSR506XPT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR565HLF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB638SBZ
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L2 larva insertion targeting C. elegans lin-39

value: L2 larva

value: ENCBS820NCM at ENCODE; https://www.encodeproject.org/ENCBS820NCM/


title: TF ChIP-seq from whole organism (ENCLB303YQY)

description:
https://www.encodeproject.org/experiments/ENCSR827AIS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L1 larva worms.
experiment encode accession: ENCSR827AIS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR117DIE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB303YQY
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L1 larva insertion targeting C. elegans snpc-4

value: whole organism

value: L1 larva

value: ENCBS028XVH at ENCODE; https://www.encodeproject.org/ENCBS028XVH/


title: TF ChIP-seq from whole organism (ENCLB052JAT)

description:
https://www.encodeproject.org/experiments/ENCSR827AIS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L1 larva worms.
experiment encode accession: ENCSR827AIS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR117DIE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB052JAT
size range: 150-350

value: whole organisms

value: CGC

value: ENCBS679YZS at ENCODE; https://www.encodeproject.org/ENCBS679YZS/


title: TF ChIP-seq from whole organism (ENCLB430OBK)

description:
https://www.encodeproject.org/experiments/ENCSR998DWT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-elt-3 in L1 larva worms.
experiment encode accession: ENCSR998DWT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR013ISV
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB430OBK
size range: 150-350

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: not applicable

value: pooled male and female

value: ENCBS855GTV at ENCODE; https://www.encodeproject.org/ENCBS855GTV/


title: Control ChIP-seq from whole organism (ENCLB937FHW)

description:
https://www.encodeproject.org/experiments/ENCSR994WLI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR994WLI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB937FHW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP186 (unc-119(ed3) III; wgIs186) mixed sex L3 larva insertion targeting C. elegans unc-39

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-39

value: L3 larva

value: unknown

value: Michael Snyder

value: ENCBS143HJA at ENCODE; https://www.encodeproject.org/ENCBS143HJA/


title: Control ChIP-seq from whole organism (ENCLB216IMZ)

description:
https://www.encodeproject.org/experiments/ENCSR996ZXI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-25-eGFP fusion proteins.
experiment encode accession: ENCSR996ZXI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB216IMZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP33 (unc-119(ed3) III; wgIs33) hermaphrodite L4 larva insertion targeting C. elegans nhr-25

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-25

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS746XRY at ENCODE; https://www.encodeproject.org/ENCBS746XRY/


title: TF ChIP-seq from whole organism (ENCLB906FSV)

description:
https://www.encodeproject.org/experiments/ENCSR998DWT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-elt-3 in L1 larva worms.
experiment encode accession: ENCSR998DWT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR013ISV
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB906FSV
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: Michael Snyder, Stanford

value: ENCBS827NTP at ENCODE; https://www.encodeproject.org/ENCBS827NTP/


title: Control ChIP-seq from whole organism (ENCLB669PBY)

description:
https://www.encodeproject.org/experiments/ENCSR994WLI/
***************
biological replicate number: 4
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR994WLI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB669PBY
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-39

value: pooled male and female

value: ENCBS628DEJ at ENCODE; https://www.encodeproject.org/ENCBS628DEJ/


title: TF ChIP-seq from whole organism (ENCLB910AOF)

description:
https://www.encodeproject.org/experiments/ENCSR506XPT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L2 larva worms.
experiment encode accession: ENCSR506XPT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR565HLF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB910AOF
size range: 150-350

value: L2 larva

value: unknown

value: CGC

value: ENCBS161JKQ at ENCODE; https://www.encodeproject.org/ENCBS161JKQ/


title: Control ChIP-seq from whole organism (ENCLB370OBB)

description:
https://www.encodeproject.org/experiments/ENCSR824HDB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR824HDB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB370OBB
size range: 150-350

source_name: Caenorhabditis elegans strain OP64 (unc-119(ed3) III; wgIs64) mixed sex mixed stage (embryo) insertion targeting C. elegans hlh-1

value: mixed stage (embryonic)

value: ENCBS458TLR at ENCODE; https://www.encodeproject.org/ENCBS458TLR/


title: Control ChIP-seq from whole organism (ENCLB624IQP)

description:
https://www.encodeproject.org/experiments/ENCSR510LKT/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR510LKT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB624IQP
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MEP-1

value: L4 larva

value: Michael Snyder

value: ENCBS256XSJ at ENCODE; https://www.encodeproject.org/ENCBS256XSJ/


title: TF ChIP-seq from whole organism (ENCLB231EWT)

description:
https://www.encodeproject.org/experiments/ENCSR998BRC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-hpl-2 in starved L1 larva worms.
experiment encode accession: ENCSR998BRC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR111HDC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB231EWT
size range: 150-350

source_name: Caenorhabditis elegans strain YL474 (lin-35(n745) I; unc-119(ed3) III; vrIs64[pGES-1::HPL-2::GFP FLAG: HPL-2 3-UTR, unc-119 (+)]) mixed sex L1 larva at L1 larva starved after bleaching stage insertion targeting C. elegans hpl-2

value: whole organism

value: whole organisms

value: L1 larva

value: L1 larva starved after bleaching

value: ENCBS526FII at ENCODE; https://www.encodeproject.org/ENCBS526FII/


title: TF ChIP-seq from whole organism (ENCLB406OBQ)

description:
https://www.encodeproject.org/experiments/ENCSR824CVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L2 larva worms.
experiment encode accession: ENCSR824CVJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR694MIX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB406OBQ
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L2 larva insertion targeting C. elegans snpc-4

value: not applicable

value: pooled male and female

value: Michael Snyder, Stanford

value: ENCBS647FXT at ENCODE; https://www.encodeproject.org/ENCBS647FXT/


title: Control ChIP-seq from whole organism (ENCLB265CVN)

description:
https://www.encodeproject.org/experiments/ENCSR824HDB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR824HDB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB265CVN
size range: 150-350

value: unknown

value: CGC

value: ENCBS747RHC at ENCODE; https://www.encodeproject.org/ENCBS747RHC/


title: TF ChIP-seq from whole organism (ENCLB171XJC)

description:
https://www.encodeproject.org/experiments/ENCSR998BRC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-hpl-2 in starved L1 larva worms.
experiment encode accession: ENCSR998BRC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR111HDC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB171XJC
size range: 150-350

value: ENCBS667FNI at ENCODE; https://www.encodeproject.org/ENCBS667FNI/


title: Control ChIP-seq from whole organism (ENCLB272UMD)

description:
https://www.encodeproject.org/experiments/ENCSR994WLI/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR994WLI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB272UMD
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-39

value: L3 larva

value: ENCBS352LUS at ENCODE; https://www.encodeproject.org/ENCBS352LUS/


title: TF ChIP-seq from whole organism (ENCLB353XIF)

description:
https://www.encodeproject.org/experiments/ENCSR993PMF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-12 in L2 larva worms.
experiment encode accession: ENCSR993PMF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR517BBL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB353XIF
size range: 150-350

value: L2 larva

value: ENCBS994HEA at ENCODE; https://www.encodeproject.org/ENCBS994HEA/


title: Control ChIP-seq from whole organism (ENCLB421OMU)

description:
https://www.encodeproject.org/experiments/ENCSR503YWW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing EFL-1-eGFP fusion proteins.
experiment encode accession: ENCSR503YWW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB421OMU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL479 hermaphrodite young adult insertion targeting C. elegans efl-1

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-1

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS954ALA at ENCODE; https://www.encodeproject.org/ENCBS954ALA/


title: TF ChIP-seq from whole organism (ENCLB074BWS)

description:
https://www.encodeproject.org/experiments/ENCSR993PMF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-12 in L2 larva worms.
experiment encode accession: ENCSR993PMF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR517BBL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB074BWS
size range: 150-350

source_name: Caenorhabditis elegans strain OP318 (unc-119(ed3) III; wgIs318) mixed sex L2 larva insertion targeting C. elegans nhr-12

value: not applicable

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS721BEC at ENCODE; https://www.encodeproject.org/ENCBS721BEC/


title: TF ChIP-seq from whole organism (ENCLB146ETC)

description:
https://www.encodeproject.org/experiments/ENCSR502LXA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-zip-8 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR502LXA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR136QRF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB146ETC
size range: 150-350

source_name: Caenorhabditis elegans strain OP327 (unc-119(ed3) III; wgIs327) mixed sex mixed stage (embryo) insertion targeting C. elegans zip-8

value: mixed stage (embryonic)

value: CGC

value: ENCBS646TJA at ENCODE; https://www.encodeproject.org/ENCBS646TJA/


title: TF ChIP-seq from whole organism (ENCLB730ZJL)

description:
https://www.encodeproject.org/experiments/ENCSR502LXA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-zip-8 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR502LXA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR136QRF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB730ZJL
size range: 150-350

value: ENCBS245VEL at ENCODE; https://www.encodeproject.org/ENCBS245VEL/


title: TF ChIP-seq from whole organism (ENCLB665LDQ)

description:
https://www.encodeproject.org/experiments/ENCSR500OTS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-13 in L2 larva worms.
experiment encode accession: ENCSR500OTS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR116MEY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB665LDQ
size range: 150-350

source_name: Caenorhabditis elegans strain OP49 (unc119(ed3);wgIs49(lin-13::TY1 EGFP FLAG;unc119)) mixed sex L2 larva insertion targeting C. elegans lin-13

value: whole organism

value: L2 larva

value: ENCBS501VYS at ENCODE; https://www.encodeproject.org/ENCBS501VYS/


title: TF ChIP-seq from whole organism (ENCLB991ZVL)

description:
https://www.encodeproject.org/experiments/ENCSR501WWC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR501WWC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056IHU
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB991ZVL
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: Michael Snyder

value: ENCBS246COK at ENCODE; https://www.encodeproject.org/ENCBS246COK/


title: TF ChIP-seq from whole organism (ENCLB888CVS)

description:
https://www.encodeproject.org/experiments/ENCSR991VDH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in L4 larva worms.
experiment encode accession: ENCSR991VDH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR860DXK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB888CVS
size range: 150-350

source_name: Caenorhabditis elegans strain OP105 (unc119(ed3);wgIs105(dpl-1::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans dpl-1

value: not applicable

value: L4 larva

value: ENCBS548IKN at ENCODE; https://www.encodeproject.org/ENCBS548IKN/


title: TF ChIP-seq from whole organism (ENCLB713BCP)

description:
https://www.encodeproject.org/experiments/ENCSR501WWC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ELT-3 in L1 larva worms.
experiment encode accession: ENCSR501WWC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR056IHU
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB713BCP
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS038LSI at ENCODE; https://www.encodeproject.org/ENCBS038LSI/


title: TF ChIP-seq from whole organism (ENCLB189VUT)

description:
https://www.encodeproject.org/experiments/ENCSR991VDH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-dpl-1 in L4 larva worms.
experiment encode accession: ENCSR991VDH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR860DXK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB189VUT
size range: 150-350

value: CGC

value: ENCBS768YCH at ENCODE; https://www.encodeproject.org/ENCBS768YCH/


title: TF ChIP-seq from whole organism (ENCLB886WCV)

description:
https://www.encodeproject.org/experiments/ENCSR499IRC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in young adult worms.
experiment encode accession: ENCSR499IRC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR463EQY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB886WCV
size range: 150-350

source_name: Caenorhabditis elegans strain YL402 (unc119(ed3)III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans lin-35

value: whole organism

value: young adult

value: ENCBS052COC at ENCODE; https://www.encodeproject.org/ENCBS052COC/


title: Control ChIP-seq from whole organism (ENCLB732FTZ)

description:
https://www.encodeproject.org/experiments/ENCSR497VLF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR497VLF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB732FTZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP239 (unc-119(ed3) III; wgIs239) mixed sex L2 larva insertion targeting C. elegans nhr-10

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-10

value: L2 larva

value: ENCBS458FAN at ENCODE; https://www.encodeproject.org/ENCBS458FAN/


title: Control ChIP-seq from whole organism (ENCLB838YYL)

description:
https://www.encodeproject.org/experiments/ENCSR497VLF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR497VLF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB838YYL
fragmentation methods: sonication (generic microtip)

value: Michael Snyder

value: ENCBS168YJX at ENCODE; https://www.encodeproject.org/ENCBS168YJX/


title: TF ChIP-seq from whole organism (ENCLB688TQP)

description:
https://www.encodeproject.org/experiments/ENCSR499IRC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in young adult worms.
experiment encode accession: ENCSR499IRC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR463EQY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB688TQP
size range: 150-350

value: not applicable

value: ENCBS152ZYV at ENCODE; https://www.encodeproject.org/ENCBS152ZYV/


title: Control ChIP-seq from whole organism (ENCLB419XBU)

description:
https://www.encodeproject.org/experiments/ENCSR496PAW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing DVE-1-eGFP fusion proteins.
experiment encode accession: ENCSR496PAW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB419XBU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP398 (unc-119(tm4063) III; wgIs398) hermaphrodite L4 larva insertion targeting C. elegans dve-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DVE-1

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS312IVY at ENCODE; https://www.encodeproject.org/ENCBS312IVY/


title: Control ChIP-seq from whole organism (ENCLB372ITJ)

description:
https://www.encodeproject.org/experiments/ENCSR994WLI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR994WLI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB372ITJ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-39

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS483GQZ at ENCODE; https://www.encodeproject.org/ENCBS483GQZ/


title: Control ChIP-seq from whole organism (ENCLB275CKL)

description:
https://www.encodeproject.org/experiments/ENCSR494DGU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR494DGU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB275CKL
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex L4 larva insertion targeting C. elegans pha-4

value: whole organisms

value: CGC

value: ENCBS747GTQ at ENCODE; https://www.encodeproject.org/ENCBS747GTQ/


title: TF ChIP-seq from whole organism (ENCLB356KAF)

description:
https://www.encodeproject.org/experiments/ENCSR824CVJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-snpc-4 in L2 larva worms.
experiment encode accession: ENCSR824CVJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR694MIX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB356KAF
size range: 150-350

value: not applicable

value: L2 larva

value: ENCBS643ZST at ENCODE; https://www.encodeproject.org/ENCBS643ZST/


title: TF ChIP-seq from whole organism (ENCLB010YBM)

description:
https://www.encodeproject.org/experiments/ENCSR492MCI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-67 in L3 larva worms.
experiment encode accession: ENCSR492MCI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR374KTM
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB010YBM
size range: 150-350

source_name: Caenorhabditis elegans strain OP373 (unc-119(tm4063) III; wgIs373) mixed sex L3 larva insertion targeting C. elegans nhr-67

value: ENCBS104XNE at ENCODE; https://www.encodeproject.org/ENCBS104XNE/


title: TF ChIP-seq from whole organism (ENCLB485GQF)

description:
https://www.encodeproject.org/experiments/ENCSR493JQJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L1 larva worms.
experiment encode accession: ENCSR493JQJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR702LKU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB485GQF
size range: 150-350

source_name: Caenorhabditis elegans strain OP304 (unc-119(ed3) III; wgIs304) mixed sex L1 larva insertion targeting C. elegans fos-1

value: L1 larva

value: ENCBS623MBU at ENCODE; https://www.encodeproject.org/ENCBS623MBU/


title: TF ChIP-seq from whole organism (ENCLB630ENO)

description:
https://www.encodeproject.org/experiments/ENCSR493TNT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-zag-1 in L3 larva worms.
experiment encode accession: ENCSR493TNT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR364HHR
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB630ENO
size range: 150-350

source_name: Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L3 larva insertion targeting C. elegans zag-1

value: ENCBS190GQV at ENCODE; https://www.encodeproject.org/ENCBS190GQV/


title: Control ChIP-seq from whole organism (ENCLB394YST)

description:
https://www.encodeproject.org/experiments/ENCSR815SRO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR815SRO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB394YST
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L2 larva insertion targeting C. elegans unc-62

value: whole organism

value: ENCBS988NDZ at ENCODE; https://www.encodeproject.org/ENCBS988NDZ/


title: TF ChIP-seq from whole organism (ENCLB357LSE)

description:
https://www.encodeproject.org/experiments/ENCSR493TNT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-zag-1 in L3 larva worms.
experiment encode accession: ENCSR493TNT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR364HHR
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB357LSE
size range: 150-350

value: pooled male and female

value: ENCBS773TXC at ENCODE; https://www.encodeproject.org/ENCBS773TXC/


title: TF ChIP-seq from whole organism (ENCLB811YLC)

description:
https://www.encodeproject.org/experiments/ENCSR816VQN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in young adult worms.
experiment encode accession: ENCSR816VQN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR951GLF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB811YLC
size range: 150-350

source_name: Caenorhabditis elegans strain YL468 (unc-119(ed3)III; vrIs93 [pMEX-5::LIN-35:GFP:FLAG::LIN-35 3'UTR, unc-119 (+)])) mixed sex young adult insertion targeting C. elegans lin-35

value: young adult

value: unknown

value: ENCBS305XJW at ENCODE; https://www.encodeproject.org/ENCBS305XJW/


title: Control ChIP-seq from whole organism (ENCLB880FAB)

description:
https://www.encodeproject.org/experiments/ENCSR815SRO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR815SRO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB880FAB
size range: 150-350

value: whole organisms

value: Michael Snyder, Stanford

value: ENCBS575YCX at ENCODE; https://www.encodeproject.org/ENCBS575YCX/


title: TF ChIP-seq from whole organism (ENCLB068MXV)

description:
https://www.encodeproject.org/experiments/ENCSR500OTS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-13 in L2 larva worms.
experiment encode accession: ENCSR500OTS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR116MEY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB068MXV
size range: 150-350

value: not applicable

value: CGC

value: ENCBS583RXE at ENCODE; https://www.encodeproject.org/ENCBS583RXE/


title: TF ChIP-seq from whole organism (ENCLB134VBU)

description:
https://www.encodeproject.org/experiments/ENCSR812VCN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against EGL-27 in L2 worms.
experiment encode accession: ENCSR812VCN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR573YEK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB134VBU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L2 larva insertion targeting C. elegans egl-27

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L2 larva

value: Michael Snyder

value: ENCBS060XPU at ENCODE; https://www.encodeproject.org/ENCBS060XPU/


title: TF ChIP-seq from whole organism (ENCLB234YOF)

description:
https://www.encodeproject.org/experiments/ENCSR816VQN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-35 in young adult worms.
experiment encode accession: ENCSR816VQN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR951GLF
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB234YOF
size range: 150-350

value: whole organism

value: ENCBS345XUX at ENCODE; https://www.encodeproject.org/ENCBS345XUX/


title: Control ChIP-seq from whole organism (ENCLB489BIF)

description:
https://www.encodeproject.org/experiments/ENCSR815AQR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR815AQR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB489BIF
size range: 150-350

source_name: Caenorhabditis elegans strain OP342 (unc-119(ed3) III; wgIs342) mixed sex L3 larva insertion targeting C. elegans skn-1

value: pooled male and female

value: L3 larva

value: ENCBS703BQO at ENCODE; https://www.encodeproject.org/ENCBS703BQO/


title: TF ChIP-seq from whole organism (ENCLB819NUN)

description:
https://www.encodeproject.org/experiments/ENCSR812VCN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against EGL-27 in L2 worms.
experiment encode accession: ENCSR812VCN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR573YEK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB819NUN
fragmentation methods: sonication (generic microtip)

value: unknown

value: ENCBS959SAS at ENCODE; https://www.encodeproject.org/ENCBS959SAS/


title: Control ChIP-seq from whole organism (ENCLB852HXJ)

description:
https://www.encodeproject.org/experiments/ENCSR489QJI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR489QJI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB852HXJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP234 (unc-119(ed3) III; wgIs234) mixed sex L4 larva insertion targeting C. elegans jun-1

value: whole organisms

value: L4 larva

value: ENCBS512OWF at ENCODE; https://www.encodeproject.org/ENCBS512OWF/


title: TF ChIP-seq from whole organism (ENCLB289HLJ)

description:
https://www.encodeproject.org/experiments/ENCSR492MCI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-67 in L3 larva worms.
experiment encode accession: ENCSR492MCI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR374KTM
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB289HLJ
size range: 150-350

value: not applicable

value: Michael Snyder, Stanford

value: ENCBS459SFV at ENCODE; https://www.encodeproject.org/ENCBS459SFV/


title: Control ChIP-seq from whole organism (ENCLB774TQF)

description:
https://www.encodeproject.org/experiments/ENCSR815AQR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR815AQR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB774TQF
size range: 150-350

value: CGC

value: ENCBS960VCQ at ENCODE; https://www.encodeproject.org/ENCBS960VCQ/


title: Control ChIP-seq from whole organism (ENCLB351OOS)

description:
https://www.encodeproject.org/experiments/ENCSR812NDR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 worms.
experiment encode accession: ENCSR812NDR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB351OOS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex L2 larva insertion targeting C. elegans ztf-11

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L2 larva

value: Michael Snyder

value: ENCBS253SEI at ENCODE; https://www.encodeproject.org/ENCBS253SEI/


title: Control ChIP-seq from whole organism (ENCLB597ALA)

description:
https://www.encodeproject.org/experiments/ENCSR812NDR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 worms.
experiment encode accession: ENCSR812NDR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB597ALA
fragmentation methods: sonication (generic microtip)

value: whole organism

value: pooled male and female

value: ENCBS992BVP at ENCODE; https://www.encodeproject.org/ENCBS992BVP/


title: Control ChIP-seq from whole organism (ENCLB907EIQ)

description:
https://www.encodeproject.org/experiments/ENCSR489QJI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR489QJI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB907EIQ
size range: 150-350

value: unknown

value: ENCBS506VQS at ENCODE; https://www.encodeproject.org/ENCBS506VQS/


title: Control ChIP-seq from whole organism (ENCLB833RRM)

description:
https://www.encodeproject.org/experiments/ENCSR494DGU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR494DGU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB833RRM
size range: 150-350

value: whole organisms

value: ENCBS297HGH at ENCODE; https://www.encodeproject.org/ENCBS297HGH/


title: Control ChIP-seq from whole organism (ENCLB456OQT)

description:
https://www.encodeproject.org/experiments/ENCSR489KVE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR489KVE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB456OQT
size range: 150-350

source_name: Caenorhabditis elegans strain OP124 (unc-119(ed3) III; wgIs124) mixed sex L1 larva insertion targeting C. elegans aha-1

value: L1 larva

value: ENCBS946ZCV at ENCODE; https://www.encodeproject.org/ENCBS946ZCV/


title: Control ChIP-seq from whole organism (ENCLB670JNL)

description:
https://www.encodeproject.org/experiments/ENCSR489KVE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR489KVE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB670JNL
size range: 150-350

value: not applicable

value: Michael Snyder, Stanford

value: ENCBS520LMH at ENCODE; https://www.encodeproject.org/ENCBS520LMH/


title: TF ChIP-seq from whole organism (ENCLB826QZQ)

description:
https://www.encodeproject.org/experiments/ENCSR493JQJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-fos-1 in L1 larva worms.
experiment encode accession: ENCSR493JQJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR702LKU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB826QZQ
size range: 150-350

value: CGC

value: ENCBS131NRZ at ENCODE; https://www.encodeproject.org/ENCBS131NRZ/


title: Control ChIP-seq from whole organism (ENCLB210BFJ)

description:
https://www.encodeproject.org/experiments/ENCSR487JHP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in embryonic worms.
experiment encode accession: ENCSR487JHP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB210BFJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP203 (unc-119(ed3) III; wgIs203) mixed sex mixed stage (embryo) insertion targeting C. elegans nhr-76

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-76

value: mixed stage (embryonic)

value: ENCBS654EDB at ENCODE; https://www.encodeproject.org/ENCBS654EDB/


title: TF ChIP-seq from whole organism (ENCLB743DIB)

description:
https://www.encodeproject.org/experiments/ENCSR485YKK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L3 larva worms.
experiment encode accession: ENCSR485YKK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR472KPY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB743DIB
size range: 150-350

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L3 larva insertion targeting C. elegans lin-15B

value: whole organism

value: L3 larva

value: ENCBS948TTG at ENCODE; https://www.encodeproject.org/ENCBS948TTG/


title: Control ChIP-seq from whole organism (ENCLB305BXI)

description:
https://www.encodeproject.org/experiments/ENCSR483GHB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR483GHB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB305BXI
size range: 150-350

source_name: Caenorhabditis elegans strain OP174 (unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)) mixed sex mixed stage (embryo) insertion targeting C. elegans ces-1

value: pooled male and female

value: unknown

value: ENCBS902NMB at ENCODE; https://www.encodeproject.org/ENCBS902NMB/


title: Control ChIP-seq from whole organism (ENCLB251ZRB)

description:
https://www.encodeproject.org/experiments/ENCSR483GHB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR483GHB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB251ZRB
size range: 150-350

value: whole organisms

value: ENCBS128QQG at ENCODE; https://www.encodeproject.org/ENCBS128QQG/


title: TF ChIP-seq from whole organism (ENCLB907CIB)

description:
https://www.encodeproject.org/experiments/ENCSR485YKK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L3 larva worms.
experiment encode accession: ENCSR485YKK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR472KPY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB907CIB
size range: 150-350

value: ENCBS387EAR at ENCODE; https://www.encodeproject.org/ENCBS387EAR/


title: Control ChIP-seq from whole organism (ENCLB411CPM)

description:
https://www.encodeproject.org/experiments/ENCSR482PKO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR482PKO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB411CPM
size range: 150-350

source_name: Caenorhabditis elegans strain OP203 (unc-119(ed3) III; wgIs203) mixed sex L4 larva insertion targeting C. elegans nhr-76

value: not applicable

value: L4 larva

value: ENCBS546DPR at ENCODE; https://www.encodeproject.org/ENCBS546DPR/


title: Control ChIP-seq from whole organism (ENCLB053WPW)

description:
https://www.encodeproject.org/experiments/ENCSR809ILU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR809ILU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB053WPW
size range: 150-350

source_name: Caenorhabditis elegans strain OP49 (unc119(ed3);wgIs49(lin-13::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans lin-13

value: Michael Snyder, Stanford

value: CGC

value: ENCBS467CIH at ENCODE; https://www.encodeproject.org/ENCBS467CIH/


title: Control ChIP-seq from whole organism (ENCLB859KCY)

description:
https://www.encodeproject.org/experiments/ENCSR487JHP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in embryonic worms.
experiment encode accession: ENCSR487JHP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB859KCY
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-76

value: mixed stage (embryonic)

value: Michael Snyder

value: ENCBS179RKN at ENCODE; https://www.encodeproject.org/ENCBS179RKN/


title: Control ChIP-seq from whole organism (ENCLB009OJA)

description:
https://www.encodeproject.org/experiments/ENCSR809ILU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR809ILU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB009OJA
size range: 150-350

value: whole organism

value: ENCBS895BLX at ENCODE; https://www.encodeproject.org/ENCBS895BLX/


title: TF ChIP-seq from whole organism (ENCLB369JFA)

description:
https://www.encodeproject.org/experiments/ENCSR812VCN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against EGL-27 in L2 worms.
experiment encode accession: ENCSR812VCN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR573YEK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB369JFA
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: L2 larva

value: unknown

value: ENCBS627XHS at ENCODE; https://www.encodeproject.org/ENCBS627XHS/


title: TF ChIP-seq from whole organism (ENCLB634XGB)

description:
https://www.encodeproject.org/experiments/ENCSR479NEM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-R02D3.7 in L3 larva worms.
experiment encode accession: ENCSR479NEM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR569PKU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB634XGB
size range: 150-350

source_name: Caenorhabditis elegans strain OP218 (unc-119(ed3) III; wgIs218) mixed sex L3 larva insertion targeting C. elegans R02D3.7

value: whole organisms

value: not applicable

value: L3 larva

value: ENCBS212YFP at ENCODE; https://www.encodeproject.org/ENCBS212YFP/


title: Control ChIP-seq from whole organism (ENCLB808BMB)

description:
https://www.encodeproject.org/experiments/ENCSR978XQS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR978XQS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB808BMB
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L3 larva insertion targeting C. elegans nhr-11

value: Michael Snyder, Stanford

value: CGC

value: ENCBS186FYN at ENCODE; https://www.encodeproject.org/ENCBS186FYN/


title: Control ChIP-seq from whole organism (ENCLB251OSV)

description:
https://www.encodeproject.org/experiments/ENCSR978XQS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR978XQS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB251OSV
size range: 150-350

value: ENCBS319APC at ENCODE; https://www.encodeproject.org/ENCBS319APC/


title: TF ChIP-seq from whole organism (ENCLB636QLC)

description:
https://www.encodeproject.org/experiments/ENCSR479NEM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-R02D3.7 in L3 larva worms.
experiment encode accession: ENCSR479NEM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR569PKU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB636QLC
size range: 150-350

value: ENCBS966ZBN at ENCODE; https://www.encodeproject.org/ENCBS966ZBN/


title: TF ChIP-seq from whole organism (ENCLB625HOP)

description:
https://www.encodeproject.org/experiments/ENCSR480JDK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-7 in L4 larva worms.
experiment encode accession: ENCSR480JDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR301FPJ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB625HOP
size range: 150-350

source_name: Caenorhabditis elegans strain OP332 (unc-119(tm4063) III; wgIs332) mixed sex L4 larva insertion targeting C. elegans ztf-7

value: L4 larva

value: ENCBS496NHO at ENCODE; https://www.encodeproject.org/ENCBS496NHO/


title: Control ChIP-seq from whole organism (ENCLB874NVT)

description:
https://www.encodeproject.org/experiments/ENCSR675OOS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR675OOS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB874NVT
size range: 150-350

source_name: Caenorhabditis elegans strain YL425 (unc-119(ed3)III; vrIs69[pDPL-1::DPL-1::GFP FLAG: DPL-1 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans dpl-1

value: whole organism

value: L1 larva

value: ENCBS001DOR at ENCODE; https://www.encodeproject.org/ENCBS001DOR/


title: Control ChIP-seq from whole organism (ENCLB336EDW)

description:
https://www.encodeproject.org/experiments/ENCSR674LVV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing DVE-1-eGFP fusion proteins.
experiment encode accession: ENCSR674LVV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB336EDW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP398 (unc-119(tm4063) III; wgIs398) hermaphrodite late embryo insertion targeting C. elegans dve-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DVE-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS411WEG at ENCODE; https://www.encodeproject.org/ENCBS411WEG/


title: TF ChIP-seq from whole organism (ENCLB222SDB)

description:
https://www.encodeproject.org/experiments/ENCSR480JDK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ztf-7 in L4 larva worms.
experiment encode accession: ENCSR480JDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR301FPJ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB222SDB
size range: 150-350

value: whole organisms

value: not applicable

value: pooled male and female

value: unknown

value: ENCBS796AEM at ENCODE; https://www.encodeproject.org/ENCBS796AEM/


title: TF ChIP-seq from whole organism (ENCLB338MXG)

description:
https://www.encodeproject.org/experiments/ENCSR977KFR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-39 in L2 larva worms.
experiment encode accession: ENCSR977KFR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR589YYN
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB338MXG
size range: 150-350

source_name: Caenorhabditis elegans strain OP186 (unc-119(ed3) III; wgIs186) mixed sex L2 larva insertion targeting C. elegans unc-39

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS874ILT at ENCODE; https://www.encodeproject.org/ENCBS874ILT/


title: Control ChIP-seq from whole organism (ENCLB789VVJ)

description:
https://www.encodeproject.org/experiments/ENCSR675OOS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR675OOS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB789VVJ
size range: 150-350

value: whole organism

value: L1 larva

value: ENCBS364QYX at ENCODE; https://www.encodeproject.org/ENCBS364QYX/


title: TF ChIP-seq from whole organism (ENCLB057CXR)

description:
https://www.encodeproject.org/experiments/ENCSR489NRF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-39 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR489NRF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR418DAW
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB057CXR
size range: 150-350

source_name: Caenorhabditis elegans strain OP169 (unc-119(ed3) III; wgIs169) mixed sex mixed stage (embryo) insertion targeting C. elegans ceh-39

value: mixed stage (embryonic)

value: ENCBS476OPJ at ENCODE; https://www.encodeproject.org/ENCBS476OPJ/


title: TF ChIP-seq from whole organism (ENCLB352OJS)

description:
https://www.encodeproject.org/experiments/ENCSR977DAI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-aha-1 in L1 larva worms.
experiment encode accession: ENCSR977DAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR489KVE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB352OJS
size range: 150-350

value: ENCBS520LMH at ENCODE; https://www.encodeproject.org/ENCBS520LMH/


title: TF ChIP-seq from whole organism (ENCLB884BMX)

description:
https://www.encodeproject.org/experiments/ENCSR977DAI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-aha-1 in L1 larva worms.
experiment encode accession: ENCSR977DAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR489KVE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB884BMX
size range: 150-350

value: ENCBS946ZCV at ENCODE; https://www.encodeproject.org/ENCBS946ZCV/


title: TF ChIP-seq from whole organism (ENCLB458PBR)

description:
https://www.encodeproject.org/experiments/ENCSR976OLR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hlh-26-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR976OLR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR789HPR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB458PBR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12174 (st12174[hlh-26::GFP+ loxP unc-119(+) + loxP]; unc-119(tm4063) III) young adult (66 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elega...

value: not collected

value: young adult

value: 66 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS537TEK at ENCODE; https://www.encodeproject.org/ENCBS537TEK/


title: TF ChIP-seq from whole organism (ENCLB356GHA)

description:
https://www.encodeproject.org/experiments/ENCSR976OLR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hlh-26-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR976OLR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR789HPR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB356GHA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: ENCBS508BNZ at ENCODE; https://www.encodeproject.org/ENCBS508BNZ/


title: Control ChIP-seq from whole organism (ENCLB581KIZ)

description:
https://www.encodeproject.org/experiments/ENCSR482PKO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR482PKO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB581KIZ
size range: 150-350

value: whole organism

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS589KRW at ENCODE; https://www.encodeproject.org/ENCBS589KRW/


title: TF ChIP-seq from whole organism (ENCLB719MNO)

description:
https://www.encodeproject.org/experiments/ENCSR672DJL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L3 larva worms.
experiment encode accession: ENCSR672DJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR851OBZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB719MNO
size range: 150-350

source_name: Caenorhabditis elegans strain OP217 (unc-119(ed3) III; ddIs172) mixed sex L3 larva insertion targeting C. elegans aly-2

value: L3 larva

value: ENCBS800IQG at ENCODE; https://www.encodeproject.org/ENCBS800IQG/


title: TF ChIP-seq from whole organism (ENCLB066RRV)

description:
https://www.encodeproject.org/experiments/ENCSR974RRZ/
***************
biological replicate number: 1
technical replicate number: 2
description: ChIP-seq against PQM-1 in L4 larva worms.
experiment encode accession: ENCSR974RRZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR001UTJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB066RRV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L4 larva insertion targeting C. elegans pqm-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: Michael Snyder

value: ENCBS371RKT at ENCODE; https://www.encodeproject.org/ENCBS371RKT/


title: TF ChIP-seq from whole organism (ENCLB926UJU)

description:
https://www.encodeproject.org/experiments/ENCSR476LGM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pros-1 in late embryonic worms.
experiment encode accession: ENCSR476LGM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR378JHP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB926UJU
size range: 150-350

source_name: Caenorhabditis elegans strain OP500 (unc-119(tm4063) III; wgIs500) mixed sex late embryo insertion targeting C. elegans pros-1

value: late embryonic

value: ENCBS010OZY at ENCODE; https://www.encodeproject.org/ENCBS010OZY/


title: TF ChIP-seq from whole organism (ENCLB635XPO)

description:
https://www.encodeproject.org/experiments/ENCSR476LGM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pros-1 in late embryonic worms.
experiment encode accession: ENCSR476LGM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR378JHP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB635XPO
size range: 150-350

value: whole organisms

value: ENCBS760OTU at ENCODE; https://www.encodeproject.org/ENCBS760OTU/


title: TF ChIP-seq from whole organism (ENCLB284YPB)

description:
https://www.encodeproject.org/experiments/ENCSR672DJL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L3 larva worms.
experiment encode accession: ENCSR672DJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR851OBZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB284YPB
size range: 150-350

value: not applicable

value: ENCBS249CWP at ENCODE; https://www.encodeproject.org/ENCBS249CWP/


title: TF ChIP-seq from whole organism (ENCLB210GEJ)

description:
https://www.encodeproject.org/experiments/ENCSR974RRZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against PQM-1 in L4 larva worms.
experiment encode accession: ENCSR974RRZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR001UTJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB210GEJ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: pooled male and female


title: TF ChIP-seq from whole organism (ENCLB431THG)

description:
https://www.encodeproject.org/experiments/ENCSR474SOA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-fkh-10 in late embryonic worms.
experiment encode accession: ENCSR474SOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR534JVP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB431THG
size range: 150-350

source_name: Caenorhabditis elegans strain OP337 (unc119(ed3);wgIs377(fkh-10::TY1 EGFP FLAG;unc119)) mixed sex late embryo insertion targeting C. elegans fkh-10

value: unknown

value: ENCBS854JBH at ENCODE; https://www.encodeproject.org/ENCBS854JBH/


title: TF ChIP-seq from whole organism (ENCLB989JIM)

description:
https://www.encodeproject.org/experiments/ENCSR671WFN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-elt-3 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR671WFN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR604IAP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB989JIM
size range: 150-350

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex mixed stage (embryo) insertion targeting C. elegans elt-3

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS318XMD at ENCODE; https://www.encodeproject.org/ENCBS318XMD/


title: TF ChIP-seq from whole organism (ENCLB903DJM)

description:
https://www.encodeproject.org/experiments/ENCSR474SOA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-fkh-10 in late embryonic worms.
experiment encode accession: ENCSR474SOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR534JVP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB903DJM
size range: 150-350

value: ENCBS433BKH at ENCODE; https://www.encodeproject.org/ENCBS433BKH/


title: Control ChIP-seq from whole organism (ENCLB320AXZ)

description:
https://www.encodeproject.org/experiments/ENCSR472XKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR472XKJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB320AXZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L1 larva insertion targeting C. elegans ceh-82

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: L1 larva

value: Michael Snyder

value: ENCBS267XMN at ENCODE; https://www.encodeproject.org/ENCBS267XMN/


title: TF ChIP-seq from whole organism (ENCLB036RCN)

description:
https://www.encodeproject.org/experiments/ENCSR670RCK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against LSY-2 in L2 larva worms.
experiment encode accession: ENCSR670RCK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR283RSJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB036RCN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex L2 larva insertion targeting C. elegans lsy-2

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-2

value: L2 larva

value: ENCBS883HPL at ENCODE; https://www.encodeproject.org/ENCBS883HPL/


title: TF ChIP-seq from whole organism (ENCLB759CGU)

description:
https://www.encodeproject.org/experiments/ENCSR671WFN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-elt-3 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR671WFN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR604IAP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB759CGU
size range: 150-350

value: whole organism

value: not applicable

value: ENCBS975FUG at ENCODE; https://www.encodeproject.org/ENCBS975FUG/


title: TF ChIP-seq from whole organism (ENCLB363DXK)

description:
https://www.encodeproject.org/experiments/ENCSR977KFR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-39 in L2 larva worms.
experiment encode accession: ENCSR977KFR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR589YYN
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB363DXK
size range: 150-350

value: pooled male and female

value: unknown

value: ENCBS610ROG at ENCODE; https://www.encodeproject.org/ENCBS610ROG/


title: TF ChIP-seq from whole organism (ENCLB193YOD)

description:
https://www.encodeproject.org/experiments/ENCSR472PQB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against UNC-30 in L1 larva worms.
experiment encode accession: ENCSR472PQB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR135POC
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB193YOD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP395 (unc-119(tm4063) III; wgIs395) mixed sex L1 larva insertion targeting C. elegans unc-30

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-30

value: Michael Snyder, Stanford

value: ENCBS644ITG at ENCODE; https://www.encodeproject.org/ENCBS644ITG/


title: TF ChIP-seq from whole organism (ENCLB647OEC)

description:
https://www.encodeproject.org/experiments/ENCSR489NRF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-39 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR489NRF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR418DAW
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB647OEC
size range: 150-350

value: mixed stage (embryonic)

value: CGC

value: ENCBS829VGP at ENCODE; https://www.encodeproject.org/ENCBS829VGP/


title: TF ChIP-seq from whole organism (ENCLB788RLT)

description:
https://www.encodeproject.org/experiments/ENCSR669FSH/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against EGL-27 in L3 worms.
experiment encode accession: ENCSR669FSH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR949QYZ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB788RLT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L3 larva insertion targeting C. elegans egl-27

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L3 larva

value: Michael Snyder

value: ENCBS843PMY at ENCODE; https://www.encodeproject.org/ENCBS843PMY/


title: Control ChIP-seq from whole organism (ENCLB368DMR)

description:
https://www.encodeproject.org/experiments/ENCSR668TAO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 worms.
experiment encode accession: ENCSR668TAO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB368DMR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans unc-62

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-62

value: L4 larva

value: ENCBS041DBE at ENCODE; https://www.encodeproject.org/ENCBS041DBE/


title: Control ChIP-seq from whole organism (ENCLB977LKS)

description:
https://www.encodeproject.org/experiments/ENCSR472XKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR472XKJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB977LKS
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: L1 larva

value: ENCBS864UZN at ENCODE; https://www.encodeproject.org/ENCBS864UZN/


title: TF ChIP-seq from whole organism (ENCLB938RPM)

description:
https://www.encodeproject.org/experiments/ENCSR670RCK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against LSY-2 in L2 larva worms.
experiment encode accession: ENCSR670RCK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR283RSJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB938RPM
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-2

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS118TIY at ENCODE; https://www.encodeproject.org/ENCBS118TIY/


title: TF ChIP-seq from whole organism (ENCLB218ADM)

description:
https://www.encodeproject.org/experiments/ENCSR669FSH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against EGL-27 in L3 worms.
experiment encode accession: ENCSR669FSH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR949QYZ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB218ADM
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L3 larva

value: Michael Snyder

value: ENCBS755ODG at ENCODE; https://www.encodeproject.org/ENCBS755ODG/


title: TF ChIP-seq from whole organism (ENCLB408GDX)

description:
https://www.encodeproject.org/experiments/ENCSR669FSH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against EGL-27 in L3 worms.
experiment encode accession: ENCSR669FSH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR949QYZ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB408GDX
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: ENCBS305ZHK at ENCODE; https://www.encodeproject.org/ENCBS305ZHK/


title: Control ChIP-seq from whole organism (ENCLB247LVB)

description:
https://www.encodeproject.org/experiments/ENCSR668TAO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 worms.
experiment encode accession: ENCSR668TAO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB247LVB
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-62

value: L4 larva

value: ENCBS958OGT at ENCODE; https://www.encodeproject.org/ENCBS958OGT/


title: TF ChIP-seq from whole organism (ENCLB267DXF)

description:
https://www.encodeproject.org/experiments/ENCSR472PQB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against UNC-30 in L1 larva worms.
experiment encode accession: ENCSR472PQB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR135POC
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB267DXF
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-30

value: pooled male and female

value: L1 larva

value: ENCBS987WUI at ENCODE; https://www.encodeproject.org/ENCBS987WUI/


title: Control ChIP-seq from whole organism (ENCLB322VPS)

description:
https://www.encodeproject.org/experiments/ENCSR472KPY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR472KPY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB322VPS
size range: 150-350

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L3 larva insertion targeting C. elegans lin-15B

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS387EAR at ENCODE; https://www.encodeproject.org/ENCBS387EAR/


title: TF ChIP-seq from whole organism (ENCLB478KHY)

description:
https://www.encodeproject.org/experiments/ENCSR974RRZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against PQM-1 in L4 larva worms.
experiment encode accession: ENCSR974RRZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR001UTJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB478KHY
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: Michael Snyder

value: ENCBS513DJK at ENCODE; https://www.encodeproject.org/ENCBS513DJK/


title: TF ChIP-seq from whole organism (ENCLB133MWE)

description:
https://www.encodeproject.org/experiments/ENCSR668OMI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668OMI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR561RIA
encode release date: 2018-03-09
lab: Valerie Reinke, Yale
library encode accession: ENCLB133MWE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL517 hermaphrodite young adult insertion targeting C. elegans rpc-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS968XEY at ENCODE; https://www.encodeproject.org/ENCBS968XEY/


title: TF ChIP-seq from whole organism (ENCLB424SUJ)

description:
https://www.encodeproject.org/experiments/ENCSR668OMI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668OMI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR561RIA
encode release date: 2018-03-09
lab: Valerie Reinke, Yale
library encode accession: ENCLB424SUJ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: ENCBS091WKR at ENCODE; https://www.encodeproject.org/ENCBS091WKR/


title: TF ChIP-seq from whole organism (ENCLB124UVL)

description:
https://www.encodeproject.org/experiments/ENCSR472HWG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-eor-1 in L3 larva worms.
experiment encode accession: ENCSR472HWG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR788SPS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB124UVL
size range: 150-350

source_name: Caenorhabditis elegans strain OP81 (unc-119(ed3) III; wgIs81) mixed sex L3 larva insertion targeting C. elegans eor-1

value: pooled male and female

value: L3 larva

value: unknown

value: ENCBS518QRI at ENCODE; https://www.encodeproject.org/ENCBS518QRI/


title: TF ChIP-seq from whole organism (ENCLB260OWJ)

description:
https://www.encodeproject.org/experiments/ENCSR472HWG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-eor-1 in L3 larva worms.
experiment encode accession: ENCSR472HWG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR788SPS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB260OWJ
size range: 150-350

value: Michael Snyder, Stanford

value: CGC

value: ENCBS053TBY at ENCODE; https://www.encodeproject.org/ENCBS053TBY/


title: TF ChIP-seq from whole organism (ENCLB831GGV)

description:
https://www.encodeproject.org/experiments/ENCSR801ZXA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L1 larva worms.
experiment encode accession: ENCSR801ZXA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR472XKJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB831GGV
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: L1 larva

value: Michael Snyder

value: ENCBS382BBR at ENCODE; https://www.encodeproject.org/ENCBS382BBR/


title: TF ChIP-seq from whole organism (ENCLB822XPI)

description:
https://www.encodeproject.org/experiments/ENCSR801ZXA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L1 larva worms.
experiment encode accession: ENCSR801ZXA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR472XKJ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB822XPI
fragmentation methods: sonication (generic microtip)

value: ENCBS518GJY at ENCODE; https://www.encodeproject.org/ENCBS518GJY/


title: Control ChIP-seq from whole organism (ENCLB688OFX)

description:
https://www.encodeproject.org/experiments/ENCSR472KPY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR472KPY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB688OFX
size range: 150-350

value: ENCBS948TTG at ENCODE; https://www.encodeproject.org/ENCBS948TTG/


title: TF ChIP-seq from whole organism (ENCLB979MAS)

description:
https://www.encodeproject.org/experiments/ENCSR669FSH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against EGL-27 in L3 worms.
experiment encode accession: ENCSR669FSH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR949QYZ
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB979MAS
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: ENCBS932YMZ at ENCODE; https://www.encodeproject.org/ENCBS932YMZ/


title: TF ChIP-seq from whole organism (ENCLB877TNW)

description:
https://www.encodeproject.org/experiments/ENCSR666MXI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L1 larva worms.
experiment encode accession: ENCSR666MXI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR903ZHS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB877TNW
size range: 150-350

source_name: Caenorhabditis elegans strain OP217 (unc-119(ed3) III; ddIs172) mixed sex L1 larva insertion targeting C. elegans aly-2

value: not applicable

value: pooled male and female

value: ENCBS259ITR at ENCODE; https://www.encodeproject.org/ENCBS259ITR/


title: TF ChIP-seq from whole organism (ENCLB577URQ)

description:
https://www.encodeproject.org/experiments/ENCSR666MXI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-aly-2 in L1 larva worms.
experiment encode accession: ENCSR666MXI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR903ZHS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB577URQ
size range: 150-350

value: unknown

value: ENCBS879YHP at ENCODE; https://www.encodeproject.org/ENCBS879YHP/