title: TF ChIP-seq from whole organism (ENCLB148CCE)

description:
https://www.encodeproject.org/experiments/ENCSR646DUL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zip-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR646DUL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR371FJS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB148CCE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP761 (wgIs761(zip-11::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0093_6G04);unc-119(+));unc-119 (tm4063)) L4 larva (52.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans zip-11

value: L4 larva

value: 52.5 hour

value: ENCBS757XXW at ENCODE; https://www.encodeproject.org/ENCBS757XXW/


title: Control ChIP-seq from whole organism (ENCLB430JPZ)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR439MOS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing T22C8.4-eGFP fusion proteins.
experiment encode accession: ENCSR439MOS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB430JPZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP785 (wgIs785(T22C8.4::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0093_5D01);unc-119(+));unc-119 (tm4063)) midembryo (2 hours) using egg bleaching insertion targeting C. elegans T22C8.4

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: Sex

value: not collected

tag: dev stage

value: midembryonic

tag: age

value: 2 hour

tag: lab

value: Valerie Reinke, Yale

tag: source

value: Valerie Reinke

tag: worm synchronization stage

value: egg bleaching

tag: link

value: ENCBS269JLK at ENCODE; https://www.encodeproject.org/ENCBS269JLK/


title: TF ChIP-seq from whole organism (ENCLB956PXV)

description:
https://www.encodeproject.org/experiments/ENCSR854NDK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against MDL-1 in L2 larva worms.
experiment encode accession: ENCSR854NDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR347VEI
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB956PXV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

extract_protocol: not provided

tag: antibody

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS825BNP at ENCODE; https://www.encodeproject.org/ENCBS825BNP/


title: TF ChIP-seq from whole organism (ENCLB598KKG)

description:
https://www.encodeproject.org/experiments/ENCSR646DUL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zip-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR646DUL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR371FJS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB598KKG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: L4 larva

value: 52.5 hour

value: L1 larva starved after bleaching

value: ENCBS738AOJ at ENCODE; https://www.encodeproject.org/ENCBS738AOJ/


title: TF ChIP-seq from whole organism (ENCLB111XJN)

description:
https://www.encodeproject.org/experiments/ENCSR773SCZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing cebp-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR773SCZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR547IXO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB111XJN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12290 (st12290[cebp-1::TY1::EGFP::3xFLAG] X) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans cebp-1

value: whole organisms

value: not applicable

value: not collected

value: young adult

value: 62 hour

value: ENCBS943TRS at ENCODE; https://www.encodeproject.org/ENCBS943TRS/


title: TF ChIP-seq from whole organism (ENCLB979HBE)

description:
https://www.encodeproject.org/experiments/ENCSR007HUT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cyc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR007HUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR807ABQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB979HBE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain cyc-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster cyc

value: cyc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cyc

value: pooled male and female

value: prepupa

value: Kevin White, UChicago

value: Kevin White

tag: fly synchronization stage

value: white prepupa

value: ENCBS107UAR at ENCODE; https://www.encodeproject.org/ENCBS107UAR/


title: TF ChIP-seq from whole organism (ENCLB189ZQD)

description:
https://www.encodeproject.org/experiments/ENCSR547MOA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L3 larva worms.
experiment encode accession: ENCSR547MOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR978XQS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB189ZQD
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex L3 larva insertion targeting C. elegans nhr-11

value: whole organism

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS186FYN at ENCODE; https://www.encodeproject.org/ENCBS186FYN/


title: TF ChIP-seq from whole organism (ENCLB550QTR)

description:
https://www.encodeproject.org/experiments/ENCSR779FXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y48G9A.11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR779FXQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR902WVK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB550QTR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12291 (st12291[Y48G9A.11::TY1::EGFP::3xFLAG] III) L4 larva (47.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y48G9A.11

value: whole organisms

value: not applicable

value: not collected

value: L4 larva

value: 47.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS877MIY at ENCODE; https://www.encodeproject.org/ENCBS877MIY/


title: TF ChIP-seq from whole organism (ENCLB405QMJ)

description:
https://www.encodeproject.org/experiments/ENCSR547MOA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in L3 larva worms.
experiment encode accession: ENCSR547MOA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR978XQS
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB405QMJ
size range: 150-350

value: pooled male and female

value: ENCBS319APC at ENCODE; https://www.encodeproject.org/ENCBS319APC/


title: Control ChIP-seq from whole organism (ENCLB262GEA)

description:
https://www.encodeproject.org/experiments/ENCSR773TZL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing K11D2.4-eGFP fusion proteins.
experiment encode accession: ENCSR773TZL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB262GEA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12320 (st12320(K11D2.4::TY1::EGFP::3xFLAG] I) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans K11D2.4

value: whole organism

value: young adult

value: 62 hour

value: ENCBS653RYU at ENCODE; https://www.encodeproject.org/ENCBS653RYU/


title: TF ChIP-seq from whole organism (ENCLB557CDT)

description:
https://www.encodeproject.org/experiments/ENCSR438PUK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR438PUK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR543RPD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB557CDT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12322 (st12322(madf-8::TY1::EGFP::3xFLAG] III) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-8

value: 64 hour

value: ENCBS854ZBZ at ENCODE; https://www.encodeproject.org/ENCBS854ZBZ/


title: Control ChIP-seq from whole organism (ENCLB277NFL)

description:
https://www.encodeproject.org/experiments/ENCSR851OBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR851OBZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB277NFL
size range: 150-350

source_name: Caenorhabditis elegans strain OP217 (unc-119(ed3) III; ddIs172) mixed sex L3 larva insertion targeting C. elegans aly-2

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS800IQG at ENCODE; https://www.encodeproject.org/ENCBS800IQG/


title: Control ChIP-seq from whole organism (ENCLB834IGA)

description:
https://www.encodeproject.org/experiments/ENCSR191UXN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12236-eGFP fusion proteins.
experiment encode accession: ENCSR191UXN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB834IGA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12236-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG12236

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12236

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS912HKX at ENCODE; https://www.encodeproject.org/ENCBS912HKX/


title: TF ChIP-seq from whole organism (ENCLB032JFB)

description:
https://www.encodeproject.org/experiments/ENCSR773SCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing cebp-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR773SCZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR547IXO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB032JFB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not collected

value: young adult

value: 62 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS512QQP at ENCODE; https://www.encodeproject.org/ENCBS512QQP/


title: TF ChIP-seq from whole organism (ENCLB276DDY)

description:
https://www.encodeproject.org/experiments/ENCSR437NZK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lir-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR437NZK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR045ZHJ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB276DDY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12318 (st12318(TY1::EGFP::3xFLAG::lir-1] II) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lir-1

value: whole organisms

value: 63 hour

value: ENCBS472ZDF at ENCODE; https://www.encodeproject.org/ENCBS472ZDF/


title: Control ChIP-seq from whole organism (ENCLB167YOR)

description:
https://www.encodeproject.org/experiments/ENCSR435DMG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing unc-98-eGFP fusion proteins.
experiment encode accession: ENCSR435DMG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB167YOR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP85 (wgIs85(unc-98::TY1 EGFP 3xFLAG(P000007_F03); unc-119(+));unc-119(ed3)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans unc-98

value: not applicable

value: L1 larva

value: 6 hour

value: ENCBS652WPK at ENCODE; https://www.encodeproject.org/ENCBS652WPK/


title: TF ChIP-seq from whole organism (ENCLB524ELW)

description:
https://www.encodeproject.org/experiments/ENCSR189NRY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hsf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR189NRY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR768IJB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB524ELW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hsf-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hsf

value: Hsf

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hsf

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS049WWQ at ENCODE; https://www.encodeproject.org/ENCBS049WWQ/


title: Control ChIP-seq from whole organism (ENCLB230BKI)

description:
https://www.encodeproject.org/experiments/ENCSR851OBZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR851OBZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB230BKI
size range: 150-350

value: whole organism

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS249CWP at ENCODE; https://www.encodeproject.org/ENCBS249CWP/


title: TF ChIP-seq from whole organism (ENCLB834FDY)

description:
https://www.encodeproject.org/experiments/ENCSR938OEQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y105C5A.15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR938OEQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR892OFS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB834FDY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP773 (wgIs773(Y105C5A.15::TY1 EGFP 3xFLAG(P000011_H09_13N06);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans Y105C5A.15

value: whole organisms

value: not applicable

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS969TET at ENCODE; https://www.encodeproject.org/ENCBS969TET/


title: TF ChIP-seq from whole organism (ENCLB819IZZ)

description:
https://www.encodeproject.org/experiments/ENCSR756TJT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F39B2.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR756TJT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR227QMC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB819IZZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12232 (st12232[F39B2.1::TY1::EGFP::3xFLAG] I) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hinf-1

value: young adult

value: 65 hour

value: ENCBS242HEX at ENCODE; https://www.encodeproject.org/ENCBS242HEX/


title: Control ChIP-seq from whole organism (ENCLB406TDI)

description:
https://www.encodeproject.org/experiments/ENCSR763DCS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing tbx-11-eGFP fusion proteins.
experiment encode accession: ENCSR763DCS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB406TDI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP368 (wgIs368(tbx-11:TY1 EGFP 3xFLAG(trimmed fosmids_A01);unc-119(+));unc-119(tm4063)) early embryo (1 hour) using egg bleaching insertion targeting C. elegans tbx-11

value: whole organism

value: early embryonic

value: 1 hour

value: egg bleaching

value: ENCBS568XOL at ENCODE; https://www.encodeproject.org/ENCBS568XOL/


title: Control ChIP-seq from whole organism (ENCLB511PMQ)

description:
https://www.encodeproject.org/experiments/ENCSR544TSB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR544TSB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB511PMQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS810BPO at ENCODE; https://www.encodeproject.org/ENCBS810BPO/


title: TF ChIP-seq from whole organism (ENCLB576EZM)

description:
https://www.encodeproject.org/experiments/ENCSR189NRY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hsf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR189NRY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR768IJB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB576EZM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Hsf

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hsf

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS726AOT at ENCODE; https://www.encodeproject.org/ENCBS726AOT/


title: TF ChIP-seq from whole organism (ENCLB529LGA)

description:
https://www.encodeproject.org/experiments/ENCSR189NRY/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hsf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR189NRY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR768IJB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB529LGA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS682WYO at ENCODE; https://www.encodeproject.org/ENCBS682WYO/


title: Control ChIP-seq from whole organism (ENCLB893ZUK)

description:
https://www.encodeproject.org/experiments/ENCSR544TSB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR544TSB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB893ZUK
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: ENCBS221AJF at ENCODE; https://www.encodeproject.org/ENCBS221AJF/


title: Control ChIP-seq from whole organism (ENCLB116LPI)

description:
https://www.encodeproject.org/experiments/ENCSR283AVD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG4282-eGFP fusion proteins.
experiment encode accession: ENCSR283AVD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB116LPI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4282-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG4282

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4282

value: pooled male and female

value: ENCBS511SOP at ENCODE; https://www.encodeproject.org/ENCBS511SOP/


title: TF ChIP-seq from whole organism (ENCLB746GNG)

description:
https://www.encodeproject.org/experiments/ENCSR756TJT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F39B2.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR756TJT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR227QMC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB746GNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: young adult

value: 65 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS176XNB at ENCODE; https://www.encodeproject.org/ENCBS176XNB/


title: TF ChIP-seq from whole organism (ENCLB561LIU)

description:
https://www.encodeproject.org/experiments/ENCSR544HRW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-jun-1 in L4 larva worms.
experiment encode accession: ENCSR544HRW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR489QJI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB561LIU
size range: 150-350

source_name: Caenorhabditis elegans strain OP234 (unc-119(ed3) III; wgIs234) mixed sex L4 larva insertion targeting C. elegans jun-1

value: not applicable

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS512OWF at ENCODE; https://www.encodeproject.org/ENCBS512OWF/


title: TF ChIP-seq from whole organism (ENCLB395CCJ)

description:
https://www.encodeproject.org/experiments/ENCSR431HNC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F37B4.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR431HNC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR462XTA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB395CCJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP374 (wgIs374(F37B4.10::TY1 EGFP 3xFLAG(P000012_E03);unc-119(+);unc-119(tm4063)) young adult (61 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F37B4.10

value: whole organism

value: whole organisms

value: 61 hour

value: ENCBS159CQZ at ENCODE; https://www.encodeproject.org/ENCBS159CQZ/


title: TF ChIP-seq from whole organism (ENCLB654KVN)

description:
https://www.encodeproject.org/experiments/ENCSR005MLL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR005MLL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR546LJI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB654KVN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pdp1-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Pdp1

value: D. mel line contraining an intronic eGFP exon to create a Pdp1-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS679LKC at ENCODE; https://www.encodeproject.org/ENCBS679LKC/


title: TF ChIP-seq from whole organism (ENCLB034QJF)

description:
https://www.encodeproject.org/experiments/ENCSR105OGL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pum-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR105OGL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR441OGV
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB034QJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pum-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pum

value: pum

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a Pum-GFP fusion gene

value: ENCBS267HFB at ENCODE; https://www.encodeproject.org/ENCBS267HFB/


title: TF ChIP-seq from whole organism (ENCLB071XUC)

description:
https://www.encodeproject.org/experiments/ENCSR938OEQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y105C5A.15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR938OEQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR892OFS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB071XUC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS841ZXQ at ENCODE; https://www.encodeproject.org/ENCBS841ZXQ/


title: TF ChIP-seq from whole organism (ENCLB949YSU)

description:
https://www.encodeproject.org/experiments/ENCSR428XQQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lim-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR428XQQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR146XXJ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB949YSU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP779 (wgIs779(lim-7::TY1 EGFP 3xFLAG(P000007_A03_13C13);unc-119(+));unc-119 (tm4063)) L4 larva (48.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans lim-7

value: whole organism

value: whole organisms

value: 48.5 hour

value: ENCBS096ATH at ENCODE; https://www.encodeproject.org/ENCBS096ATH/


title: TF ChIP-seq from whole organism (ENCLB939WRD)

description:
https://www.encodeproject.org/experiments/ENCSR438PUK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR438PUK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR543RPD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB939WRD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: young adult

value: 64 hour

value: ENCBS452JVJ at ENCODE; https://www.encodeproject.org/ENCBS452JVJ/


title: TF ChIP-seq from whole organism (ENCLB891YPR)

description:
https://www.encodeproject.org/experiments/ENCSR428XQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lim-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR428XQQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR146XXJ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB891YPR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS956ZVX at ENCODE; https://www.encodeproject.org/ENCBS956ZVX/


title: TF ChIP-seq from whole organism (ENCLB305OSD)

description:
https://www.encodeproject.org/experiments/ENCSR005MLL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR005MLL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR546LJI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB305OSD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: D. mel line contraining an intronic eGFP exon to create a Pdp1-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS433YZM at ENCODE; https://www.encodeproject.org/ENCBS433YZM/


title: TF ChIP-seq from whole organism (ENCLB010QVJ)

description:
https://www.encodeproject.org/experiments/ENCSR544HRW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-jun-1 in L4 larva worms.
experiment encode accession: ENCSR544HRW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR489QJI
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB010QVJ
size range: 150-350

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS506VQS at ENCODE; https://www.encodeproject.org/ENCBS506VQS/


title: TF ChIP-seq from whole organism (ENCLB079PVZ)

description:
https://www.encodeproject.org/experiments/ENCSR437NZK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lir-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR437NZK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR045ZHJ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB079PVZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS005SEA at ENCODE; https://www.encodeproject.org/ENCBS005SEA/


title: Control ChIP-seq from whole organism (ENCLB734HGB)

description:
https://www.encodeproject.org/experiments/ENCSR935YYP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing egrh-3-eGFP fusion proteins.
experiment encode accession: ENCSR935YYP
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB734HGB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12196 (st12196[egrh-3::TY1::EGFP::3xFLAG] IV) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans egrh-3

value: not applicable

value: 65 hour

value: ENCBS454FNP at ENCODE; https://www.encodeproject.org/ENCBS454FNP/


title: TF ChIP-seq from whole organism (ENCLB849KLH)

description:
https://www.encodeproject.org/experiments/ENCSR005MLL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR005MLL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR546LJI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB849KLH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: D. mel line contraining an intronic eGFP exon to create a Pdp1-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS008URC at ENCODE; https://www.encodeproject.org/ENCBS008URC/


title: Control ChIP-seq from whole organism (ENCLB596GYG)

description:
https://www.encodeproject.org/experiments/ENCSR635PJA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing let-526-eGFP fusion proteins.
experiment encode accession: ENCSR635PJA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB596GYG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12306 (st12306(let-526::TY1::EGFP::3xFLAG] I) young adult (60 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans let-526

value: whole organism

value: whole organisms

value: not collected

value: 60 hour

value: ENCBS667YCF at ENCODE; https://www.encodeproject.org/ENCBS667YCF/


title: TF ChIP-seq from whole organism (ENCLB077ADV)

description:
https://www.encodeproject.org/experiments/ENCSR685QDW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L4 larva worms.
experiment encode accession: ENCSR685QDW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR042ZGM
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB077ADV
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L4 larva insertion targeting C. elegans nhr-28

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS901AIS at ENCODE; https://www.encodeproject.org/ENCBS901AIS/


title: Control ChIP-seq from whole organism (ENCLB600PNG)

description:
https://www.encodeproject.org/experiments/ENCSR426AYW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lag-1-eGFP fusion proteins.
experiment encode accession: ENCSR426AYW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB600PNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12314 (st12314(lag-1::TY1::EGFP::3xFLAG] IV) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lag-1

value: not applicable

value: young adult

value: 62 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS315YQL at ENCODE; https://www.encodeproject.org/ENCBS315YQL/


title: TF ChIP-seq from whole organism (ENCLB672CSI)

description:
https://www.encodeproject.org/experiments/ENCSR685QDW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in L4 larva worms.
experiment encode accession: ENCSR685QDW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR042ZGM
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB672CSI
size range: 150-350

value: whole organism

value: pooled male and female

value: ENCBS874VDT at ENCODE; https://www.encodeproject.org/ENCBS874VDT/


title: Control ChIP-seq from whole organism (ENCLB913JXH)

description:
https://www.encodeproject.org/experiments/ENCSR754LZH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-40-eGFP fusion proteins.
experiment encode accession: ENCSR754LZH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB913JXH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP232 (wgIs232(ceh-40::TY1 EGFP FLAG;unc-119);unc-119(ed3)) young adult (76 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-40

value: whole organisms

value: not collected

value: 76 hour

value: ENCBS463HRX at ENCODE; https://www.encodeproject.org/ENCBS463HRX/


title: Control ChIP-seq from whole organism (ENCLB835XEM)

description:
https://www.encodeproject.org/experiments/ENCSR849GNY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR849GNY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB835XEM
size range: 150-350

source_name: Caenorhabditis elegans strain OP228 (unc-119(ed3) III; wgIs228) mixed sex L2 larva insertion targeting C. elegans nhr-237

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS286JEK at ENCODE; https://www.encodeproject.org/ENCBS286JEK/


title: Control ChIP-seq from whole organism (ENCLB698ZSR)

description:
https://www.encodeproject.org/experiments/ENCSR103JYD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Six4-eGFP fusion proteins.
experiment encode accession: ENCSR103JYD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB698ZSR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Six4-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Six4

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Six4

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS865TOU at ENCODE; https://www.encodeproject.org/ENCBS865TOU/


title: Control ChIP-seq from whole organism (ENCLB422QBO)

description:
https://www.encodeproject.org/experiments/ENCSR849GNY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR849GNY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB422QBO
size range: 150-350

value: whole organism

value: pooled male and female

value: CGC

value: ENCBS462BGB at ENCODE; https://www.encodeproject.org/ENCBS462BGB/


title: TF ChIP-seq from whole organism (ENCLB245AOF)

description:
https://www.encodeproject.org/experiments/ENCSR004RJS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9876-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR004RJS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR033RMH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB245AOF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9876-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9876

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9876

value: 0-24 hour

value: ENCBS717FRH at ENCODE; https://www.encodeproject.org/ENCBS717FRH/


title: Control ChIP-seq from whole organism (ENCLB439QRW)

description:
https://www.encodeproject.org/experiments/ENCSR755KQG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing sea-1-eGFP fusion proteins.
experiment encode accession: ENCSR755KQG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB439QRW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP129 (wgIs129(sea-1::TY1 EGFP 3xFLAG(P000004_E06); unc-119(+));unc-119(ed3)) early embryo (0 hours) using egg bleaching insertion targeting C. elegans sea-1

value: not collected

value: early embryonic

value: 0 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS808EKY at ENCODE; https://www.encodeproject.org/ENCBS808EKY/


title: TF ChIP-seq from whole organism (ENCLB944YUM)

description:
https://www.encodeproject.org/experiments/ENCSR748DYJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y53F4B.3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748DYJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR858MGR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB944YUM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12270 (st12270[Y53F4B.3::TY1::EGFP::3xFLAG] II) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y53F4B.3

value: not applicable

value: young adult

value: 64 hour

value: L1 larva starved after bleaching

value: ENCBS013HAK at ENCODE; https://www.encodeproject.org/ENCBS013HAK/


title: Control ChIP-seq from whole organism (ENCLB814ZVJ)

description:
https://www.encodeproject.org/experiments/ENCSR627LBA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing grh-1-eGFP fusion proteins.
experiment encode accession: ENCSR627LBA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB814ZVJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12208 (st12208[grh-1::TY1::EGFP::3xFLAG] I) L1 larva (6 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans grh-1

value: whole organism

value: L1 larva

value: 6 hour

value: ENCBS345FCA at ENCODE; https://www.encodeproject.org/ENCBS345FCA/


title: TF ChIP-seq from whole organism (ENCLB157GNY)

description:
https://www.encodeproject.org/experiments/ENCSR431HNC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F37B4.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR431HNC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR462XTA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB157GNY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: 61 hour

value: ENCBS533HSV at ENCODE; https://www.encodeproject.org/ENCBS533HSV/


title: Control ChIP-seq from whole organism (ENCLB010HSC)

description:
https://www.encodeproject.org/experiments/ENCSR923LMS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y79H2A.3-eGFP fusion proteins.
experiment encode accession: ENCSR923LMS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB010HSC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12273 (st12273[Y79H2A.3::TY1::EGFP::3xFLAG] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y79H2A.3

value: not collected

value: 63 hour

value: ENCBS220BYK at ENCODE; https://www.encodeproject.org/ENCBS220BYK/


title: Control ChIP-seq from whole organism (ENCLB246FOV)

description:
https://www.encodeproject.org/experiments/ENCSR541IIQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR541IIQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB246FOV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP427 (unc-119(ed3) III; wgIs427) mixed sex L2 larva insertion targeting C. elegans mbf-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MBF-1

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS777JLB at ENCODE; https://www.encodeproject.org/ENCBS777JLB/


title: TF ChIP-seq from whole organism (ENCLB963BEA)

description:
https://www.encodeproject.org/experiments/ENCSR748DYJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y53F4B.3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748DYJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR858MGR
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB963BEA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: young adult

value: 64 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS074LSL at ENCODE; https://www.encodeproject.org/ENCBS074LSL/


title: Control ChIP-seq from whole organism (ENCLB653HDR)

description:
https://www.encodeproject.org/experiments/ENCSR922HTN/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing rcor-1-eGFP fusion proteins.
experiment encode accession: ENCSR922HTN
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB653HDR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12222 (st12222[rcor-1::TY1::EGFP::3xFLAG] I) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans rcor-1

value: whole organisms

value: not collected

value: 65 hour

value: ENCBS032WYK at ENCODE; https://www.encodeproject.org/ENCBS032WYK/


title: TF ChIP-seq from whole organism (ENCLB211URW)

description:
https://www.encodeproject.org/experiments/ENCSR004RJS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9876-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR004RJS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR033RMH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB211URW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9876

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS257JQU at ENCODE; https://www.encodeproject.org/ENCBS257JQU/


title: Control ChIP-seq from whole organism (ENCLB690GPV)

description:
https://www.encodeproject.org/experiments/ENCSR621SAX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing madf-9-eGFP fusion proteins.
experiment encode accession: ENCSR621SAX
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB690GPV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12324 (st12324(madf-9::TY1::EGFP::3xFLAG] IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-9

value: whole organism

value: not applicable

value: L4 larva

value: 48 hour

value: ENCBS492SDQ at ENCODE; https://www.encodeproject.org/ENCBS492SDQ/


title: TF ChIP-seq from whole organism (ENCLB448OCP)

description:
https://www.encodeproject.org/experiments/ENCSR620IUW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zfp-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR620IUW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR776AID
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB448OCP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12271 (st12271[zfp-3::TY1::EGFP::3xFLAG] X) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans zfp-3

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS771OYS at ENCODE; https://www.encodeproject.org/ENCBS771OYS/


title: Control ChIP-seq from whole organism (ENCLB896LFE)

description:
https://www.encodeproject.org/experiments/ENCSR540YYL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 worms.
experiment encode accession: ENCSR540YYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB896LFE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP231 (unc-119(ed3) III; wgIs231) mixed sex L2 larva insertion targeting C. elegans ZK546.5

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS080JWS at ENCODE; https://www.encodeproject.org/ENCBS080JWS/


title: TF ChIP-seq from whole organism (ENCLB624WWU)

description:
https://www.encodeproject.org/experiments/ENCSR620IUW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing zfp-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR620IUW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR776AID
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB624WWU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS945OYV at ENCODE; https://www.encodeproject.org/ENCBS945OYV/


title: TF ChIP-seq from whole organism (ENCLB415FWH)

description:
https://www.encodeproject.org/experiments/ENCSR101LNT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3065-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR101LNT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR903IOU
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB415FWH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG3065-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG3065

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3065

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS649YNY at ENCODE; https://www.encodeproject.org/ENCBS649YNY/


title: Control ChIP-seq from whole organism (ENCLB489NQY)

description:
https://www.encodeproject.org/experiments/ENCSR541IIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR541IIQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB489NQY
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MBF-1

value: ENCBS742OER at ENCODE; https://www.encodeproject.org/ENCBS742OER/


title: Control ChIP-seq from whole organism (ENCLB580VTR)

description:
https://www.encodeproject.org/experiments/ENCSR004EEK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing vfl-eGFP fusion proteins.
experiment encode accession: ENCSR004EEK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB580VTR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain vfl-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster zld

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to vfl

value: 0-24 hour

value: ENCBS138QPE at ENCODE; https://www.encodeproject.org/ENCBS138QPE/


title: TF ChIP-seq from whole organism (ENCLB865ADM)

description:
https://www.encodeproject.org/experiments/ENCSR101LNT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3065-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR101LNT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR903IOU
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB865ADM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS695DZT at ENCODE; https://www.encodeproject.org/ENCBS695DZT/


title: TF ChIP-seq from whole organism (ENCLB070ZCC)

description:
https://www.encodeproject.org/experiments/ENCSR741CUW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tab-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR741CUW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR361HLQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB070ZCC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP787 (wgIs787(T27A8.2::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0091_2H08);unc-119(+));unc-119 (tm4063)) midembryo (3.5 hours) using egg bleaching insertion targeting C. elegans tab-1

value: not collected

value: midembryonic

value: 3.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS477TBS at ENCODE; https://www.encodeproject.org/ENCBS477TBS/


title: Control ChIP-seq from whole organism (ENCLB940GQU)

description:
https://www.encodeproject.org/experiments/ENCSR540YYL/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 worms.
experiment encode accession: ENCSR540YYL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB940GQU
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK546.5

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS243ARO at ENCODE; https://www.encodeproject.org/ENCBS243ARO/


title: Control ChIP-seq from whole organism (ENCLB341YGJ)

description:
https://www.encodeproject.org/experiments/ENCSR540NNC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR540NNC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB341YGJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP234 (unc-119(ed3) III; wgIs234) mixed sex L3 larva insertion targeting C. elegans jun-1

value: whole organisms

value: L3 larva

value: CGC

value: ENCBS326EEH at ENCODE; https://www.encodeproject.org/ENCBS326EEH/


title: Control ChIP-seq from whole organism (ENCLB192RJH)

description:
https://www.encodeproject.org/experiments/ENCSR919EWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hsf-1-eGFP fusion proteins.
experiment encode accession: ENCSR919EWZ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB192RJH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12254 (st12254[hsf-1::TY1::EGFP::3xFLAG] I) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hsf-1

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS220TCV at ENCODE; https://www.encodeproject.org/ENCBS220TCV/


title: Control ChIP-seq from whole organism (ENCLB296BKR)

description:
https://www.encodeproject.org/experiments/ENCSR100SUV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG4854-eGFP fusion proteins.
experiment encode accession: ENCSR100SUV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB296BKR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Drosophila melanogaster strain CG4854-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG4854

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4854

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS180GJS at ENCODE; https://www.encodeproject.org/ENCBS180GJS/


title: Control ChIP-seq from whole organism (ENCLB065XDP)

description:
https://www.encodeproject.org/experiments/ENCSR730XBT/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-100-eGFP fusion proteins.
experiment encode accession: ENCSR730XBT
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB065XDP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12233 (st12233[ceh-100::TY1::EGFP::3xFLAG] II) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-100

value: whole organisms

value: 64 hour

value: Valerie Reinke

value: ENCBS784AEK at ENCODE; https://www.encodeproject.org/ENCBS784AEK/


title: TF ChIP-seq from whole organism (ENCLB839VON)

description:
https://www.encodeproject.org/experiments/ENCSR741CUW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tab-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR741CUW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR361HLQ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB839VON
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: midembryonic

value: 3.5 hour

value: egg bleaching

value: ENCBS771KPP at ENCODE; https://www.encodeproject.org/ENCBS771KPP/


title: Control ChIP-seq from whole organism (ENCLB774BAT)

description:
https://www.encodeproject.org/experiments/ENCSR000WON/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG4820-eGFP fusion proteins.
experiment encode accession: ENCSR000WON
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB774BAT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4820-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG4820

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4820

value: pooled male and female

value: 0-16 hour

value: ENCBS338LVZ at ENCODE; https://www.encodeproject.org/ENCBS338LVZ/


title: TF ChIP-seq from whole organism (ENCLB085UKQ)

description:
https://www.encodeproject.org/experiments/ENCSR418ISI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-25-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR418ISI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR126TTK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB085UKQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12287 (st12287[ztf-25 ::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-25

value: not applicable

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS861XFN at ENCODE; https://www.encodeproject.org/ENCBS861XFN/


title: Control ChIP-seq from K562 (ENCLB373BUF)

description:
https://www.encodeproject.org/experiments/ENCSR833ZKY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR833ZKY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB373BUF
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens HOXB6

tag: line

value: cell line

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: ATCC

value: ENCBS370UKC at ENCODE; https://www.encodeproject.org/ENCBS370UKC/


title: Control ChIP-seq from whole organism (ENCLB381AEM)

description:
https://www.encodeproject.org/experiments/ENCSR540NNC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR540NNC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB381AEM
size range: 150-350

value: whole organism

value: whole organisms

value: pooled male and female

value: L3 larva

value: unknown

value: CGC

value: ENCBS129JHM at ENCODE; https://www.encodeproject.org/ENCBS129JHM/


title: Control ChIP-seq from whole organism (ENCLB350CZR)

description:
https://www.encodeproject.org/experiments/ENCSR727GDS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lin-38-eGFP fusion proteins.
experiment encode accession: ENCSR727GDS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB350CZR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12236 (st12236[lin-38::TY1::EGFP::3xFLAG] II) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lin-38

value: not applicable

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS727YYY at ENCODE; https://www.encodeproject.org/ENCBS727YYY/


title: Control ChIP-seq from K562 (ENCLB846RKT)

description:
https://www.encodeproject.org/experiments/ENCSR501CEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR501CEJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB846RKT
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF717

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: Kevin White

value: ENCBS913GRE at ENCODE; https://www.encodeproject.org/ENCBS913GRE/


title: TF ChIP-seq from whole organism (ENCLB523CGQ)

description:
https://www.encodeproject.org/experiments/ENCSR417YYF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing flt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR417YYF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR581NPL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB523CGQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12255 (st12255[flt-1::TY1::EGFP::3xFLAG] I) midembryo (1 hour) using egg bleaching insertion targeting C. elegans baz-2

value: whole organism

value: whole organisms

value: midembryonic

value: 1 hour

value: egg bleaching

value: ENCBS954DGB at ENCODE; https://www.encodeproject.org/ENCBS954DGB/


title: TF ChIP-seq from whole organism (ENCLB868XGH)

description:
https://www.encodeproject.org/experiments/ENCSR680ZDH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PAG-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR680ZDH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR160SNG
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB868XGH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP154 (unc-119(ed3) III; wgIs154) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans pag-3

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAG-3

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS297XRU at ENCODE; https://www.encodeproject.org/ENCBS297XRU/


title: TF ChIP-seq from whole organism (ENCLB000NOS)

description:
https://www.encodeproject.org/experiments/ENCSR916YMR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR916YMR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR566ZRE
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB000NOS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12212 (st12212[lin-1::TY1::EGFP::3xFLAG] IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lin-1

tag: biosample encode accession

tag: collection date

value: not collected

value: L4 larva

value: 48 hour

value: L1 larva starved after bleaching

value: ENCBS768ZLX at ENCODE; https://www.encodeproject.org/ENCBS768ZLX/


title: TF ChIP-seq from whole organism (ENCLB498FSX)

description:
https://www.encodeproject.org/experiments/ENCSR845XRR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against LIN-35 in YA worms.
experiment encode accession: ENCSR845XRR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346UOK
encode release date: 2018-02-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB498FSX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL521 (unc-119(ed3) III; vrIs117 [pPIE-1::LIN-35:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)])) mixed sex young adult insertion targeting C. elegans lin-35

value: whole organism

value: whole organisms

tag: geographic location

tag: encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-35

value: pooled male and female

value: young adult

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS813PJE at ENCODE; https://www.encodeproject.org/ENCBS813PJE/


title: TF ChIP-seq from whole organism (ENCLB810LGA)

description:
https://www.encodeproject.org/experiments/ENCSR915ANO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ref-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR915ANO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR569HMX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB810LGA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12224 (st12224[ref-1::TY1::EGFP::3xFLAG] II) midembryo (3 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans ref-1

value: not applicable

tag: Sex

tag: dev stage

value: midembryonic

value: 3 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS382TPV at ENCODE; https://www.encodeproject.org/ENCBS382TPV/


title: Control ChIP-seq from whole organism (ENCLB493OBQ)

description:
https://www.encodeproject.org/experiments/ENCSR617WSR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nhr-42-eGFP fusion proteins.
experiment encode accession: ENCSR617WSR
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB493OBQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP351 (wgIs351(nhr-42::TY1 EGFP 3xFLAG(P000009_D03);unc-119(+));unc-119(tm4063)) L4 larva (50 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-42

value: not collected

value: L4 larva

tag: age

value: 50 hour

tag: lab

value: Valerie Reinke

value: ENCBS866YZE at ENCODE; https://www.encodeproject.org/ENCBS866YZE/


title: Control ChIP-seq from A549 (ENCLB850OAG)

description:
https://www.encodeproject.org/experiments/ENCSR779AKU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR779AKU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB850OAG
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens A549 cell line

value: cell line

value: male

value: adult

value: 58 year

tag: source

value: ATCC

value: ENCBS699TLO at ENCODE; https://www.encodeproject.org/ENCBS699TLO/


title: Control ChIP-seq from A549 (ENCLB064JMS)

description:
https://www.encodeproject.org/experiments/ENCSR779AKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human A549
experiment encode accession: ENCSR779AKU
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB064JMS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: not applicable

value: Michael Snyder, Stanford

tag: link

value: ENCBS728OEM at ENCODE; https://www.encodeproject.org/ENCBS728OEM/


title: TF ChIP-seq from whole organism (ENCLB371DRR)

description:
https://www.encodeproject.org/experiments/ENCSR915ANO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ref-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR915ANO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR569HMX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB371DRR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

tag: antibody

value: whole organism

value: whole organisms

value: midembryonic

value: 3 hour

value: Valerie Reinke, Yale

tag: worm synchronization stage

value: ENCBS795LJJ at ENCODE; https://www.encodeproject.org/ENCBS795LJJ/


title: TF ChIP-seq from whole organism (ENCLB199TMW)

description:
https://www.encodeproject.org/experiments/ENCSR722TGM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nfyb-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR722TGM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR316HUP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB199TMW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12190 (st12190[nfyb-1::TY1::EGFP::3xFLAG] II) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans nfyb-1

value: not collected

value: young adult

value: 65 hour

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS643PYL at ENCODE; https://www.encodeproject.org/ENCBS643PYL/


title: TF ChIP-seq from whole organism (ENCLB059YOZ)

description:
https://www.encodeproject.org/experiments/ENCSR845XRR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against LIN-35 in YA worms.
experiment encode accession: ENCSR845XRR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR346UOK
encode release date: 2018-02-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB059YOZ
fragmentation methods: sonication (generic microtip)

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-35

value: pooled male and female

value: unknown

value: Michael Snyder

value: ENCBS677TNS at ENCODE; https://www.encodeproject.org/ENCBS677TNS/


title: TF ChIP-seq from whole organism (ENCLB090AGI)

description:
https://www.encodeproject.org/experiments/ENCSR722TGM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nfyb-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR722TGM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR316HUP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB090AGI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: ENCBS564TDF at ENCODE; https://www.encodeproject.org/ENCBS564TDF/


title: Control ChIP-seq from whole organism (ENCLB642CWH)

description:
https://www.encodeproject.org/experiments/ENCSR538KZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in LE worms.
experiment encode accession: ENCSR538KZZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB642CWH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain NC1639 ([wdIs49 (pttr39::UNC-55a::GFP; dpy-20+) III) mixed sex late embryo insertion targeting C. elegans unc-55

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-55

value: late embryonic

value: Michael Snyder, Stanford

value: ENCBS150JFS at ENCODE; https://www.encodeproject.org/ENCBS150JFS/


title: Control ChIP-seq from MCF-7 (ENCLB445HSV)

description:
https://www.encodeproject.org/experiments/ENCSR439GBR/
***************
biological replicate number: 1
technical replicate number: 1
description: MCF7 immortalized cell line stably expressing C-terminal eGFP-TSC22D2 fusion protein.
experiment encode accession: ENCSR439GBR
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-08-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB445HSV
size range: 450-650

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2

tag: line

value: cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TSC22D2.

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Kevin White

value: ENCBS831CET at ENCODE; https://www.encodeproject.org/ENCBS831CET/


title: Control ChIP-seq from MCF-7 (ENCLB887TBH)

description:
https://www.encodeproject.org/experiments/ENCSR438BNB/
***************
biological replicate number: 1
technical replicate number: 1
description: MCF7 immortalized cell line stably expressing C-terminal eGFP-ZNF331 fusion protein.
experiment encode accession: ENCSR438BNB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-09-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB887TBH
size range: 450-650

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF331.

tag: health state

value: ENCBS175NCK at ENCODE; https://www.encodeproject.org/ENCBS175NCK/


title: Control ChIP-seq from whole organism (ENCLB649PIL)

description:
https://www.encodeproject.org/experiments/ENCSR606PYG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-20-eGFP fusion proteins.
experiment encode accession: ENCSR606PYG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB649PIL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12211 (st12211[ceh-20::TY1::EGFP::3xFLAG] III) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-20

value: whole organism

value: not applicable

value: not collected

value: L4 larva

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS059BDV at ENCODE; https://www.encodeproject.org/ENCBS059BDV/


title: Control ChIP-seq from whole organism (ENCLB347XLC)

description:
https://www.encodeproject.org/experiments/ENCSR538KZZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in LE worms.
experiment encode accession: ENCSR538KZZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB347XLC
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-55

value: pooled male and female

value: late embryonic

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS816AJF at ENCODE; https://www.encodeproject.org/ENCBS816AJF/


title: Control ChIP-seq from whole organism (ENCLB056QRL)

description:
https://www.encodeproject.org/experiments/ENCSR603CHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nhr-120-eGFP fusion proteins.
experiment encode accession: ENCSR603CHQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB056QRL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP415 (wgIs415(nhr-120::TY1 EGFP 3xFLAG(91C03);unc-119(+);unc-119(tm4063)) young adult (64 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-120

value: whole organism

value: young adult

value: 64 hour

value: ENCBS426TLH at ENCODE; https://www.encodeproject.org/ENCBS426TLH/


title: TF ChIP-seq from whole organism (ENCLB341USA)

description:
https://www.encodeproject.org/experiments/ENCSR418ISI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-25-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR418ISI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR126TTK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB341USA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12287 (st12287[ztf-25 ::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-25

value: not applicable

value: not collected

value: 63 hour

value: ENCBS898VGS at ENCODE; https://www.encodeproject.org/ENCBS898VGS/


title: Control ChIP-seq from K562 (ENCLB942BOQ)

description:
https://www.encodeproject.org/experiments/ENCSR914PHJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR914PHJ
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB942BOQ
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZNF253

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS403OZW at ENCODE; https://www.encodeproject.org/ENCBS403OZW/


title: Control ChIP-seq from whole organism (ENCLB344ULL)

description:
https://www.encodeproject.org/experiments/ENCSR602WXH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing B0019.2-eGFP fusion proteins.
experiment encode accession: ENCSR602WXH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB344ULL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12288 (st12288[B0019.2::TY1::EGFP::3xFLAG] I) young adult (63.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans B0019.2

value: whole organisms

value: 63.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS322FDD at ENCODE; https://www.encodeproject.org/ENCBS322FDD/


title: TF ChIP-seq from whole organism (ENCLB878BNR)

description:
https://www.encodeproject.org/experiments/ENCSR845QMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in L3 larva worms.
experiment encode accession: ENCSR845QMZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR415CLB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB878BNR
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex L3 larva insertion targeting C. elegans pha-4

value: whole organism

value: not applicable

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS113SQC at ENCODE; https://www.encodeproject.org/ENCBS113SQC/


title: TF ChIP-seq from whole organism (ENCLB337QCQ)

description:
https://www.encodeproject.org/experiments/ENCSR417YYF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing flt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR417YYF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR581NPL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB337QCQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12255 (st12255[flt-1::TY1::EGFP::3xFLAG] I) midembryo (1 hour) using egg bleaching insertion targeting C. elegans baz-2

value: not collected

value: midembryonic

value: 1 hour

value: egg bleaching

value: ENCBS414QSZ at ENCODE; https://www.encodeproject.org/ENCBS414QSZ/


title: TF ChIP-seq from whole organism (ENCLB881EFQ)

description:
https://www.encodeproject.org/experiments/ENCSR916YMR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR916YMR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR566ZRE
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB881EFQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: ENCBS779HZE at ENCODE; https://www.encodeproject.org/ENCBS779HZE/


title: TF ChIP-seq from whole organism (ENCLB512RBP)

description:
https://www.encodeproject.org/experiments/ENCSR600ZIY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F33H1.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR600ZIY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR893THZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB512RBP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12303 (st12303[F33H1.4::TY1::EGFP::3xFLAG] II) young adult (62.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans F33H1.4

value: whole organism

value: not applicable

value: young adult

value: 62.5 hour

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS131MFK at ENCODE; https://www.encodeproject.org/ENCBS131MFK/


title: TF ChIP-seq from whole organism (ENCLB776AJA)

description:
https://www.encodeproject.org/experiments/ENCSR600ZIY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F33H1.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR600ZIY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR893THZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB776AJA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS131PTD at ENCODE; https://www.encodeproject.org/ENCBS131PTD/


title: Control ChIP-seq from whole organism (ENCLB090BTX)

description:
https://www.encodeproject.org/experiments/ENCSR408DLT/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing egl-43-eGFP fusion proteins.
experiment encode accession: ENCSR408DLT
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB090BTX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12181 (st12181[egl-43::TY1::EGFP::3xFLAG] II) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans egl-43

value: 49 hour

value: ENCBS157VCO at ENCODE; https://www.encodeproject.org/ENCBS157VCO/


title: Control ChIP-seq from SK-N-SH (ENCLB354XTV)

description:
https://www.encodeproject.org/experiments/ENCSR593IWN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR593IWN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-09-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB354XTV
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

source_name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS488LGJ at ENCODE; https://www.encodeproject.org/ENCBS488LGJ/


title: TF ChIP-seq from whole organism (ENCLB015NUC)

description:
https://www.encodeproject.org/experiments/ENCSR598EEO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tra-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR598EEO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR866UWY
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB015NUC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain DZ840 (tra-1(ez72[biotag::GFP::TEV::3xflag::tra-1]) III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans tra-1

value: whole organism

value: whole organisms

value: not applicable

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS951OEM at ENCODE; https://www.encodeproject.org/ENCBS951OEM/


title: TF ChIP-seq from whole organism (ENCLB965UCB)

description:
https://www.encodeproject.org/experiments/ENCSR845QMZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-pha-4 in L3 larva worms.
experiment encode accession: ENCSR845QMZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR415CLB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB965UCB
size range: 150-350

value: pooled male and female

value: L3 larva

value: unknown

value: CGC

value: ENCBS900MYD at ENCODE; https://www.encodeproject.org/ENCBS900MYD/


title: TF ChIP-seq from whole organism (ENCLB999ZAM)

description:
https://www.encodeproject.org/experiments/ENCSR598EEO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tra-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR598EEO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR866UWY
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB999ZAM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L1 larva starved after bleaching

value: ENCBS878OOK at ENCODE; https://www.encodeproject.org/ENCBS878OOK/


title: Control ChIP-seq from SK-N-SH (ENCLB903CSS)

description:
https://www.encodeproject.org/experiments/ENCSR593IWN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR593IWN
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-09-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB903CSS
fragmentation methods: sonication (Bioruptor Pico)
size range: 250-450

value: SK-N-SH

value: cell line

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ATCC

value: treatment_term_id:CHEBI:15367; treatment_term_name:all-trans-retinoic acid; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS597FBQ at ENCODE; https://www.encodeproject.org/ENCBS597FBQ/