title: Control ChIP-seq from whole organism (ENCLB289TOX)

description:
https://www.encodeproject.org/experiments/ENCSR976PNA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG12768-eGFP fusion proteins.
experiment encode accession: ENCSR976PNA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB289TOX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12768-GFP male adult insertion targeting D. melanogaster CG12768

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12768

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS865KZJ at ENCODE; https://www.encodeproject.org/ENCBS865KZJ/


title: TF ChIP-seq from whole organism (ENCLB893PSO)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR472URU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing gl-eGFP fusion proteins.
experiment encode accession: ENCSR472URU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR467AKB
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB893PSO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain gl mixed sex pupa (24 hours) insertion targeting D. melanogaster gl

tag: antibody

value: gl

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gl

tag: Sex

value: pooled male and female

tag: dev stage

value: pupa

tag: age

value: 24 hour

tag: lab

tag: source

tag: link

value: ENCBS202JXQ at ENCODE; https://www.encodeproject.org/ENCBS202JXQ/


title: Control ChIP-seq from whole organism (ENCLB770MBU)

description:
https://www.encodeproject.org/experiments/ENCSR437TND/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Atf3-eGFP fusion proteins.
experiment encode accession: ENCSR437TND
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB770MBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain A3-3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Atf3

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Atf3

value: embryonic

value: 0-24 hour

value: ENCBS600DSN at ENCODE; https://www.encodeproject.org/ENCBS600DSN/


title: TF ChIP-seq from whole organism (ENCLB133NWS)

description:
https://www.encodeproject.org/experiments/ENCSR182XQD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-82 in L3 larva worms.
experiment encode accession: ENCSR182XQD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR452BKA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB133NWS
size range: 150-350

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L3 larva insertion targeting C. elegans ceh-82

extract_protocol: not provided

value: whole organism

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS260TNL at ENCODE; https://www.encodeproject.org/ENCBS260TNL/


title: TF ChIP-seq from whole organism (ENCLB723HSR)

description:
https://www.encodeproject.org/experiments/ENCSR476TPB/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13204-eGFP fusion proteins.
experiment encode accession: ENCSR476TPB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR842BMI
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB723HSR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13204-GFP mixed sex pupa (24 hours) insertion targeting D. melanogaster CG13204

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13204

value: Kevin White, UChicago

value: Kevin White

value: ENCBS367YIU at ENCODE; https://www.encodeproject.org/ENCBS367YIU/


title: TF ChIP-seq from whole organism (ENCLB622UBG)

description:
https://www.encodeproject.org/experiments/ENCSR978WWC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7045-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR978WWC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR278PHU
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB622UBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7045-GFP male adult insertion targeting D. melanogaster tHMG1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7045

value: male

value: adult

value: ENCBS381JVR at ENCODE; https://www.encodeproject.org/ENCBS381JVR/


title: TF ChIP-seq from whole organism (ENCLB854ZCF)

description:
https://www.encodeproject.org/experiments/ENCSR059UYF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L1 larva worms.
experiment encode accession: ENCSR059UYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR195VRA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB854ZCF
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L1 larva insertion targeting C. elegans lin-39

value: pooled male and female

value: L1 larva

value: ENCBS524WTO at ENCODE; https://www.encodeproject.org/ENCBS524WTO/


title: TF ChIP-seq from whole organism (ENCLB604MRB)

description:
https://www.encodeproject.org/experiments/ENCSR648DJA/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sry-delta-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR648DJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR974LPR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB604MRB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sry-delta-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Sry-delta

value: Sry-δ

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sry-delta

value: embryonic

value: 0-24 hour

value: ENCBS354PME at ENCODE; https://www.encodeproject.org/ENCBS354PME/


title: TF ChIP-seq from whole organism (ENCLB146LWA)

description:
https://www.encodeproject.org/experiments/ENCSR476TPB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13204-eGFP fusion proteins.
experiment encode accession: ENCSR476TPB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR842BMI
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB146LWA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13204

value: pupa

value: 24 hour

value: Kevin White, UChicago

value: ENCBS326HZZ at ENCODE; https://www.encodeproject.org/ENCBS326HZZ/


title: TF ChIP-seq from whole organism (ENCLB742YCM)

description:
https://www.encodeproject.org/experiments/ENCSR973GNK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing zen-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973GNK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR386WUO
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB742YCM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-4 hours) insertion targeting D. melanogaster zen

value: zen

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zen

value: 0-4 hour

value: Kevin White

value: ENCBS276PPV at ENCODE; https://www.encodeproject.org/ENCBS276PPV/


title: Control ChIP-seq from whole organism (ENCLB210YKZ)

description:
https://www.encodeproject.org/experiments/ENCSR641HBT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing br-eGFP fusion proteins.
experiment encode accession: ENCSR641HBT
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB210YKZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster br

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RE

value: pooled male and female

value: wandering third instar larva

value: unknown

value: ENCBS967TWF at ENCODE; https://www.encodeproject.org/ENCBS967TWF/


title: Control ChIP-seq from whole organism (ENCLB441SBW)

description:
https://www.encodeproject.org/experiments/ENCSR474FXV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ss-RA-eGFP fusion proteins.
experiment encode accession: ENCSR474FXV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-02-01
lab: Kevin White, UChicago
library encode accession: ENCLB441SBW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ss-GFP mixed sex prepupa (24 hours) insertion targeting D. melanogaster ss

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ss-RB

value: prepupa

value: ENCBS055SZN at ENCODE; https://www.encodeproject.org/ENCBS055SZN/


title: TF ChIP-seq from whole organism (ENCLB210WXS)

description:
https://www.encodeproject.org/experiments/ENCSR764LDS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8089-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR764LDS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR562KLY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB210WXS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8089-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG8089

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8089

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS736BNZ at ENCODE; https://www.encodeproject.org/ENCBS736BNZ/


title: Control ChIP-seq from whole organism (ENCLB811GKP)

description:
https://www.encodeproject.org/experiments/ENCSR803QSF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR803QSF
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB811GKP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Blimp-1-GFP embryo (10-12 hours) insertion targeting D. melanogaster Blimp-1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Blimp-1

value: not collected

value: Kevin White

value: ENCBS232HUL at ENCODE; https://www.encodeproject.org/ENCBS232HUL/


title: TF ChIP-seq from whole organism (ENCLB607GQO)

description:
https://www.encodeproject.org/experiments/ENCSR973GNK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing zen-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973GNK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR386WUO
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB607GQO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: zen

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zen

value: pooled male and female

value: 0-4 hour

value: ENCBS327GXW at ENCODE; https://www.encodeproject.org/ENCBS327GXW/


title: TF ChIP-seq from whole organism (ENCLB194KAE)

description:
https://www.encodeproject.org/experiments/ENCSR974OVB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR974OVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR971AQO
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB194KAE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain exex embryo (6-24 hours) insertion targeting D. melanogaster exex

value: exex

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to exex

value: ENCBS256TAA at ENCODE; https://www.encodeproject.org/ENCBS256TAA/


title: Control ChIP-seq from whole organism (ENCLB542HPL)

description:
https://www.encodeproject.org/experiments/ENCSR065RRX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR065RRX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB542HPL
size range: 150-350

source_name: Caenorhabditis elegans strain OP109 (unc-119(ed3) III; wgIs109) mixed sex L1 larva insertion targeting C. elegans blmp-1

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS554SGS at ENCODE; https://www.encodeproject.org/ENCBS554SGS/


title: TF ChIP-seq from whole organism (ENCLB032IFY)

description:
https://www.encodeproject.org/experiments/ENCSR974OVB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR974OVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR971AQO
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB032IFY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS942FBN at ENCODE; https://www.encodeproject.org/ENCBS942FBN/


title: Control ChIP-seq from whole organism (ENCLB570HGL)

description:
https://www.encodeproject.org/experiments/ENCSR065RRX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR065RRX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB570HGL
size range: 150-350

value: whole organism

value: pooled male and female

value: ENCBS383PLU at ENCODE; https://www.encodeproject.org/ENCBS383PLU/


title: TF ChIP-seq from whole organism (ENCLB133SOX)

description:
https://www.encodeproject.org/experiments/ENCSR974OVB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR974OVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR971AQO
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB133SOX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: exex

value: whole organisms

value: ENCBS217MSP at ENCODE; https://www.encodeproject.org/ENCBS217MSP/


title: Control ChIP-seq from whole organism (ENCLB091IFM)

description:
https://www.encodeproject.org/experiments/ENCSR244KIK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR244KIK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB091IFM
size range: 150-350

source_name: Caenorhabditis elegans strain OP124 (unc-119(ed3) III; wgIs124) mixed sex L4 larva insertion targeting C. elegans aha-1

value: not applicable

value: L4 larva

value: ENCBS601ZKO at ENCODE; https://www.encodeproject.org/ENCBS601ZKO/


title: TF ChIP-seq from whole organism (ENCLB653BKA)

description:
https://www.encodeproject.org/experiments/ENCSR974OVB/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR974OVB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR971AQO
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB653BKA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to exex

value: ENCBS687AYU at ENCODE; https://www.encodeproject.org/ENCBS687AYU/


title: Control ChIP-seq from whole organism (ENCLB654PRF)

description:
https://www.encodeproject.org/experiments/ENCSR636YHR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Mes4-eGFP fusion proteins.
experiment encode accession: ENCSR636YHR
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB654PRF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Mes4-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Mes4

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pho

value: 0-24 hour

value: ENCBS238WWS at ENCODE; https://www.encodeproject.org/ENCBS238WWS/


title: TF ChIP-seq from whole organism (ENCLB527QMM)

description:
https://www.encodeproject.org/experiments/ENCSR336KUP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against efl-1 in L1 larva worms grown at 26C.
experiment encode accession: ENCSR336KUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR006GXP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB527QMM
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) hermaphrodite L1 larva whole organism

value: L1 larva grown at 26C.

value: hermaphrodite

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS765SAU at ENCODE; https://www.encodeproject.org/ENCBS765SAU/


title: Control ChIP-seq from whole organism (ENCLB974JJR)

description:
https://www.encodeproject.org/experiments/ENCSR665ROL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG2875-eGFP fusion proteins.
experiment encode accession: ENCSR665ROL
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB974JJR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2875-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG2875

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2875

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS806LZW at ENCODE; https://www.encodeproject.org/ENCBS806LZW/


title: TF ChIP-seq from whole organism (ENCLB914VKQ)

description:
https://www.encodeproject.org/experiments/ENCSR800TLY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15514-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR800TLY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR594SSF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB914VKQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15514-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG15514

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15514

value: 0-24 hour

value: ENCBS966GAI at ENCODE; https://www.encodeproject.org/ENCBS966GAI/


title: TF ChIP-seq from whole organism (ENCLB190ORV)

description:
https://www.encodeproject.org/experiments/ENCSR182XQD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-82 in L3 larva worms.
experiment encode accession: ENCSR182XQD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR452BKA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB190ORV
size range: 150-350

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L3 larva insertion targeting C. elegans ceh-82

value: L3 larva

value: unknown

value: ENCBS769CZB at ENCODE; https://www.encodeproject.org/ENCBS769CZB/


title: Control ChIP-seq from whole organism (ENCLB825AOI)

description:
https://www.encodeproject.org/experiments/ENCSR473QXV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing wek-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR473QXV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB825AOI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain wek-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster wek

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to wek

value: 0-16 hour

value: ENCBS853UOV at ENCODE; https://www.encodeproject.org/ENCBS853UOV/


title: TF ChIP-seq from whole organism (ENCLB698DFP)

description:
https://www.encodeproject.org/experiments/ENCSR472URU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing gl-eGFP fusion proteins.
experiment encode accession: ENCSR472URU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR467AKB
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB698DFP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gl mixed sex pupa (24 hours) insertion targeting D. melanogaster gl

value: gl

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gl

value: pupa

value: 24 hour

value: ENCBS227OQI at ENCODE; https://www.encodeproject.org/ENCBS227OQI/


title: Control ChIP-seq from whole organism (ENCLB661GCU)

description:
https://www.encodeproject.org/experiments/ENCSR244KIK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR244KIK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB661GCU
size range: 150-350

value: not applicable

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS255OST at ENCODE; https://www.encodeproject.org/ENCBS255OST/


title: TF ChIP-seq from whole organism (ENCLB053EEK)

description:
https://www.encodeproject.org/experiments/ENCSR800UAU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR800UAU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR196IIL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB053EEK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain D1 pupa (24 hours) insertion targeting D. melanogaster D1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D1

value: not collected

value: Kevin White, UChicago

value: Kevin White

value: ENCBS489BHZ at ENCODE; https://www.encodeproject.org/ENCBS489BHZ/


title: TF ChIP-seq from whole organism (ENCLB897OIM)

description:
https://www.encodeproject.org/experiments/ENCSR973GNK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing zen-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973GNK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR386WUO
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB897OIM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: zen

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zen

value: embryonic

value: 0-4 hour

value: ENCBS700LGW at ENCODE; https://www.encodeproject.org/ENCBS700LGW/


title: TF ChIP-seq from whole organism (ENCLB544PWD)

description:
https://www.encodeproject.org/experiments/ENCSR663AGU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sox100B-eGFP fusion proteins.
experiment encode accession: ENCSR663AGU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR607FIB
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB544PWD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox100B-GFP mixed sex embryo (6-16 hours) insertion targeting D. melanogaster Sox100B

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox100B

value: ENCBS263EHR at ENCODE; https://www.encodeproject.org/ENCBS263EHR/


title: TF ChIP-seq from whole organism (ENCLB431WCB)

description:
https://www.encodeproject.org/experiments/ENCSR059UYF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-39 in L1 larva worms.
experiment encode accession: ENCSR059UYF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR195VRA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB431WCB
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L1 larva insertion targeting C. elegans lin-39

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS235TSW at ENCODE; https://www.encodeproject.org/ENCBS235TSW/


title: TF ChIP-seq from whole organism (ENCLB324NXJ)

description:
https://www.encodeproject.org/experiments/ENCSR180AQI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-egl-27 in L1 larva worms.
experiment encode accession: ENCSR180AQI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR132PKK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB324NXJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L1 larva insertion targeting C. elegans egl-27

value: ENCBS140JFC at ENCODE; https://www.encodeproject.org/ENCBS140JFC/


title: TF ChIP-seq from whole organism (ENCLB049KCD)

description:
https://www.encodeproject.org/experiments/ENCSR756AUU/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sage-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR756AUU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR020BSJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB049KCD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sage-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster sage

value: sage

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sage

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS436IZC at ENCODE; https://www.encodeproject.org/ENCBS436IZC/


title: Control ChIP-seq from whole organism (ENCLB649VHA)

description:
https://www.encodeproject.org/experiments/ENCSR181OGO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR181OGO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB649VHA
size range: 150-350

source_name: Caenorhabditis elegans strain OP345 (unc-119(ed3) III; wgIs345) mixed sex L1 larva insertion targeting C. elegans C16A3.4

value: whole organism

value: whole organisms

value: ENCBS845HOD at ENCODE; https://www.encodeproject.org/ENCBS845HOD/


title: TF ChIP-seq from whole organism (ENCLB181YJX)

description:
https://www.encodeproject.org/experiments/ENCSR663AGU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sox100B-eGFP fusion proteins.
experiment encode accession: ENCSR663AGU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR607FIB
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB181YJX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox100B

value: embryonic

value: ENCBS824ZIN at ENCODE; https://www.encodeproject.org/ENCBS824ZIN/


title: Control ChIP-seq from whole organism (ENCLB730TLW)

description:
https://www.encodeproject.org/experiments/ENCSR668TPK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668TPK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB730TLW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Abd-B-GFP embryo (4-20 hours) insertion targeting D. melanogaster Abd-B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Abd-B

value: not collected

value: ENCBS275XXE at ENCODE; https://www.encodeproject.org/ENCBS275XXE/


title: TF ChIP-seq from whole organism (ENCLB966LNP)

description:
https://www.encodeproject.org/experiments/ENCSR800UAU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR800UAU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR196IIL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB966LNP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D1

value: pupa

value: 24 hour

value: ENCBS025TEX at ENCODE; https://www.encodeproject.org/ENCBS025TEX/


title: TF ChIP-seq from whole organism (ENCLB121FME)

description:
https://www.encodeproject.org/experiments/ENCSR425SCD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HmgD-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR425SCD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR080CLA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB121FME
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HmgD-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster HmgD

value: HmgD

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgD

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS287ZAL at ENCODE; https://www.encodeproject.org/ENCBS287ZAL/


title: TF ChIP-seq from whole organism (ENCLB836DZY)

description:
https://www.encodeproject.org/experiments/ENCSR756AUU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sage-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR756AUU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR020BSJ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB836DZY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: sage

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sage

value: wandering third instar larva

value: unknown

value: Kevin White

value: ENCBS979NDB at ENCODE; https://www.encodeproject.org/ENCBS979NDB/


title: TF ChIP-seq from whole organism (ENCLB007XJQ)

description:
https://www.encodeproject.org/experiments/ENCSR798RBJ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing zf30C-eGFP fusion proteins.
experiment encode accession: ENCSR798RBJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684VZM
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB007XJQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain zf30C-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster zf30C

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zf30C

value: embryonic

value: ENCBS922YIH at ENCODE; https://www.encodeproject.org/ENCBS922YIH/


title: Control ChIP-seq from whole organism (ENCLB006ZQE)

description:
https://www.encodeproject.org/experiments/ENCSR181OGO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR181OGO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB006ZQE
size range: 150-350

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS934ZKR at ENCODE; https://www.encodeproject.org/ENCBS934ZKR/


title: Control ChIP-seq from whole organism (ENCLB470YZY)

description:
https://www.encodeproject.org/experiments/ENCSR935TKK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Ets97D-eGFP fusion proteins.
experiment encode accession: ENCSR935TKK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB470YZY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Delg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Ets97D

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ets97D

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS353KAW at ENCODE; https://www.encodeproject.org/ENCBS353KAW/


title: TF ChIP-seq from whole organism (ENCLB929HZO)

description:
https://www.encodeproject.org/experiments/ENCSR800TLY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15514-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR800TLY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR594SSF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB929HZO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15514

value: ENCBS321MQX at ENCODE; https://www.encodeproject.org/ENCBS321MQX/


title: TF ChIP-seq from whole organism (ENCLB985ZZS)

description:
https://www.encodeproject.org/experiments/ENCSR798RBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing zf30C-eGFP fusion proteins.
experiment encode accession: ENCSR798RBJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684VZM
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB985ZZS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zf30C

value: Kevin White

value: ENCBS986YID at ENCODE; https://www.encodeproject.org/ENCBS986YID/


title: TF ChIP-seq from whole organism (ENCLB820JYR)

description:
https://www.encodeproject.org/experiments/ENCSR425SCD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HmgD-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR425SCD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR080CLA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB820JYR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: HmgD

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgD

value: embryonic

value: ENCBS415MMC at ENCODE; https://www.encodeproject.org/ENCBS415MMC/


title: TF ChIP-seq from whole organism (ENCLB039IUT)

description:
https://www.encodeproject.org/experiments/ENCSR800TLY/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15514-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR800TLY
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR594SSF
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB039IUT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS798HMK at ENCODE; https://www.encodeproject.org/ENCBS798HMK/


title: TF ChIP-seq from whole organism (ENCLB467GHU)

description:
https://www.encodeproject.org/experiments/ENCSR336KUP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against efl-1 in L1 larva worms grown at 26C.
experiment encode accession: ENCSR336KUP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR006GXP
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB467GHU
size range: 150-350

value: L1 larva grown at 26C.

value: hermaphrodite

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS050OZM at ENCODE; https://www.encodeproject.org/ENCBS050OZM/


title: TF ChIP-seq from whole organism (ENCLB114OKL)

description:
https://www.encodeproject.org/experiments/ENCSR661BEZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CTCF-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR661BEZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR163RIQ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB114OKL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CTCF-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CTCF

value: CTCF

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CTCF

value: pooled male and female

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS366JAO at ENCODE; https://www.encodeproject.org/ENCBS366JAO/


title: Control ChIP-seq from whole organism (ENCLB012QKU)

description:
https://www.encodeproject.org/experiments/ENCSR426HJS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Slp2-eGFP fusion proteins.
experiment encode accession: ENCSR426HJS
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB012QKU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 9T-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster slp2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Slp2

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS200HHG at ENCODE; https://www.encodeproject.org/ENCBS200HHG/


title: Control ChIP-seq from whole organism (ENCLB411QUP)

description:
https://www.encodeproject.org/experiments/ENCSR664RUV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17181-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR664RUV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB411QUP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain kah-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Kah

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to kah

value: ENCBS942QQG at ENCODE; https://www.encodeproject.org/ENCBS942QQG/


title: Control ChIP-seq from whole organism (ENCLB954FWV)

description:
https://www.encodeproject.org/experiments/ENCSR797ZUO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bigmax-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR797ZUO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB954FWV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bigmax-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster bigmax

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to bigmax

value: ENCBS800GIP at ENCODE; https://www.encodeproject.org/ENCBS800GIP/


title: Control ChIP-seq from whole organism (ENCLB329FIT)

description:
https://www.encodeproject.org/experiments/ENCSR664OPV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing lab-eGFP fusion proteins.
experiment encode accession: ENCSR664OPV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB329FIT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lab-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster lab

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lab

value: ENCBS067HLC at ENCODE; https://www.encodeproject.org/ENCBS067HLC/


title: TF ChIP-seq from whole organism (ENCLB271UIN)

description:
https://www.encodeproject.org/experiments/ENCSR663AGU/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sox100B-eGFP fusion proteins.
experiment encode accession: ENCSR663AGU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR607FIB
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB271UIN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox100B

value: ENCBS280FWF at ENCODE; https://www.encodeproject.org/ENCBS280FWF/


title: TF ChIP-seq from whole organism (ENCLB439JDM)

description:
https://www.encodeproject.org/experiments/ENCSR425SCD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing HmgD-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR425SCD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR080CLA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB439JDM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: HmgD

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgD

value: pooled male and female

value: Kevin White, UChicago

value: ENCBS970KWQ at ENCODE; https://www.encodeproject.org/ENCBS970KWQ/


title: Control ChIP-seq from whole organism (ENCLB506VPM)

description:
https://www.encodeproject.org/experiments/ENCSR177KQK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR177KQK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB506VPM
size range: 150-350

source_name: Caenorhabditis elegans strain OP353 (unc-119(tm4063) III; wgIs353) mixed sex L3 larva insertion targeting C. elegans nhr-77

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS068PBL at ENCODE; https://www.encodeproject.org/ENCBS068PBL/


title: Control ChIP-seq from whole organism (ENCLB021KWF)

description:
https://www.encodeproject.org/experiments/ENCSR972CCK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR972CCK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB021KWF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dek mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dek

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dek

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS742SDD at ENCODE; https://www.encodeproject.org/ENCBS742SDD/


title: TF ChIP-seq from whole organism (ENCLB837YXM)

description:
https://www.encodeproject.org/experiments/ENCSR933LXL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing woc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR933LXL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR851XBU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB837YXM
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain woc-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster woc

value: woc

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to woc

value: wandering third instar larva

value: ENCBS113RLI at ENCODE; https://www.encodeproject.org/ENCBS113RLI/


title: TF ChIP-seq from whole organism (ENCLB970GST)

description:
https://www.encodeproject.org/experiments/ENCSR180AQI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-egl-27 in L1 larva worms.
experiment encode accession: ENCSR180AQI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR132PKK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB970GST
size range: 150-350

value: pooled male and female

value: L1 larva

value: ENCBS868JZF at ENCODE; https://www.encodeproject.org/ENCBS868JZF/


title: TF ChIP-seq from whole organism (ENCLB283WLU)

description:
https://www.encodeproject.org/experiments/ENCSR932STL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Elba2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR932STL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR224PPR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB283WLU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9883-GFP mixed sex embryo (0-4 hours) insertion targeting D. melanogaster Elba2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Elba2

value: 0-4 hour

value: Kevin White, UChicago

value: ENCBS801TXU at ENCODE; https://www.encodeproject.org/ENCBS801TXU/


title: TF ChIP-seq from whole organism (ENCLB953TBN)

description:
https://www.encodeproject.org/experiments/ENCSR798RBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing zf30C-eGFP fusion proteins.
experiment encode accession: ENCSR798RBJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684VZM
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB953TBN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zf30C

value: embryonic

value: ENCBS706KJJ at ENCODE; https://www.encodeproject.org/ENCBS706KJJ/


title: TF ChIP-seq from whole organism (ENCLB490ZAF)

description:
https://www.encodeproject.org/experiments/ENCSR058SJV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR058SJV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR196QUU
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB490ZAF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L3 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS321IPF at ENCODE; https://www.encodeproject.org/ENCBS321IPF/


title: Control ChIP-seq from whole organism (ENCLB281AXU)

description:
https://www.encodeproject.org/experiments/ENCSR971AQO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR971AQO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB281AXU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain exex embryo (6-24 hours) insertion targeting D. melanogaster exex

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to exex

value: not collected

value: Kevin White

value: ENCBS234YRD at ENCODE; https://www.encodeproject.org/ENCBS234YRD/


title: TF ChIP-seq from whole organism (ENCLB777SAB)

description:
https://www.encodeproject.org/experiments/ENCSR423GBK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fd85E-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR423GBK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR689PMU
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB777SAB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd85E-GFP mixed sex prepupa insertion targeting D. melanogaster FoxP

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd85E-aka FoxP

value: pooled male and female

value: prepupa

value: Kevin White, UChicago

value: ENCBS140TFK at ENCODE; https://www.encodeproject.org/ENCBS140TFK/


title: TF ChIP-seq from whole organism (ENCLB676JHA)

description:
https://www.encodeproject.org/experiments/ENCSR661BEZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CTCF-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR661BEZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR163RIQ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB676JHA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: CTCF

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CTCF

value: embryonic

value: 0-16 hour

value: ENCBS986CYN at ENCODE; https://www.encodeproject.org/ENCBS986CYN/


title: TF ChIP-seq from whole organism (ENCLB535GYA)

description:
https://www.encodeproject.org/experiments/ENCSR058SJV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ELT-3 in L3 larva worms.
experiment encode accession: ENCSR058SJV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR196QUU
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB535GYA
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS342CVE at ENCODE; https://www.encodeproject.org/ENCBS342CVE/


title: Control ChIP-seq from whole organism (ENCLB846VUV)

description:
https://www.encodeproject.org/experiments/ENCSR470WSI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing scrt-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR470WSI
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB846VUV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain scrt-GFP mixed sex embryo (4-24 hours) insertion targeting D. melanogaster scrt

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to scrt

value: pooled male and female

value: Kevin White

value: ENCBS890YVR at ENCODE; https://www.encodeproject.org/ENCBS890YVR/


title: Control ChIP-seq from whole organism (ENCLB850UWX)

description:
https://www.encodeproject.org/experiments/ENCSR470OED/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10431-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR470OED
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB850UWX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10431-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster CG10431

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10431

value: 0-12 hour

value: Kevin White, UChicago

value: ENCBS052WVV at ENCODE; https://www.encodeproject.org/ENCBS052WVV/


title: Control ChIP-seq from whole organism (ENCLB920OSO)

description:
https://www.encodeproject.org/experiments/ENCSR472BOK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR472BOK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB920OSO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7101 female adult insertion targeting D. melanogaster CG7101

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7101

value: female

value: adult

value: ENCBS426EWE at ENCODE; https://www.encodeproject.org/ENCBS426EWE/


title: TF ChIP-seq from whole organism (ENCLB323VZT)

description:
https://www.encodeproject.org/experiments/ENCSR932STL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Elba2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR932STL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR224PPR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB323VZT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Elba2

value: embryonic

value: 0-4 hour

value: ENCBS569WAW at ENCODE; https://www.encodeproject.org/ENCBS569WAW/


title: Control ChIP-seq from whole organism (ENCLB479TWF)

description:
https://www.encodeproject.org/experiments/ENCSR056ZSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR056ZSZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB479TWF
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex L3 larva insertion targeting C. elegans nhr-28

value: not applicable

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS855KKT at ENCODE; https://www.encodeproject.org/ENCBS855KKT/


title: Control ChIP-seq from whole organism (ENCLB584POU)

description:
https://www.encodeproject.org/experiments/ENCSR177KQK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR177KQK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB584POU
size range: 150-350

value: whole organism

value: ENCBS803XJZ at ENCODE; https://www.encodeproject.org/ENCBS803XJZ/


title: TF ChIP-seq from whole organism (ENCLB850XJH)

description:
https://www.encodeproject.org/experiments/ENCSR180AQI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-egl-27 in L1 larva worms.
experiment encode accession: ENCSR180AQI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR132PKK
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB850XJH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L1 larva insertion targeting C. elegans egl-27

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L1 larva

value: Michael Snyder

value: ENCBS294MRK at ENCODE; https://www.encodeproject.org/ENCBS294MRK/


title: Control ChIP-seq from whole organism (ENCLB062FXW)

description:
https://www.encodeproject.org/experiments/ENCSR971AQO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR971AQO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB062FXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to exex

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS462WXC at ENCODE; https://www.encodeproject.org/ENCBS462WXC/


title: Control ChIP-seq from whole organism (ENCLB009JUX)

description:
https://www.encodeproject.org/experiments/ENCSR471YLT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR471YLT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB009JUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Su(var)2-HP2 embryo (0-10 hours) insertion targeting D. melanogaster Su(var)2-HP2

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)2-HP2

value: 0-10 hour

value: ENCBS686OCQ at ENCODE; https://www.encodeproject.org/ENCBS686OCQ/


title: TF ChIP-seq from whole organism (ENCLB953SFU)

description:
https://www.encodeproject.org/experiments/ENCSR469KTM/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR469KTM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR592WZZ
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB953SFU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gem mixed sex embryo (0-24 hours) insertion targeting D. melanogaster gem

value: gem

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gem

value: pooled male and female

value: 0-24 hour

value: ENCBS557HTE at ENCODE; https://www.encodeproject.org/ENCBS557HTE/


title: Control ChIP-seq from whole organism (ENCLB752ANP)

description:
https://www.encodeproject.org/experiments/ENCSR056ZSZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR056ZSZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB752ANP
size range: 150-350

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS940DKU at ENCODE; https://www.encodeproject.org/ENCBS940DKU/


title: TF ChIP-seq from whole organism (ENCLB764LGY)

description:
https://www.encodeproject.org/experiments/ENCSR469KTM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR469KTM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR592WZZ
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB764LGY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS885FJA at ENCODE; https://www.encodeproject.org/ENCBS885FJA/


title: Control ChIP-seq from whole organism (ENCLB430HFR)

description:
https://www.encodeproject.org/experiments/ENCSR470NLR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG7839-eGFP fusion proteins.
experiment encode accession: ENCSR470NLR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB430HFR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7839 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG7839

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7839

value: ENCBS461YPF at ENCODE; https://www.encodeproject.org/ENCBS461YPF/


title: Control ChIP-seq from whole organism (ENCLB110QOW)

description:
https://www.encodeproject.org/experiments/ENCSR243FJF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR243FJF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB110QOW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain XE1464 (unc-119(ed3) III;) mixed sex L4 larva insertion targeting C. elegans daf-16

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: L4 larva

value: Michael Snyder

value: ENCBS869SLD at ENCODE; https://www.encodeproject.org/ENCBS869SLD/


title: TF ChIP-seq from whole organism (ENCLB698KFL)

description:
https://www.encodeproject.org/experiments/ENCSR751FSX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10631-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR751FSX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR520BTD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB698KFL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10631-GFP prepupa at white prepupa stage insertion targeting D. melanogaster CG10631

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10631

value: not collected

value: prepupa

tag: fly synchronization stage

value: white prepupa

value: ENCBS132EJX at ENCODE; https://www.encodeproject.org/ENCBS132EJX/


title: TF ChIP-seq from whole organism (ENCLB653MKM)

description:
https://www.encodeproject.org/experiments/ENCSR933LXL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing woc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR933LXL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR851XBU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB653MKM
fragmentation methods: sonication (Bioruptor generic)

value: woc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to woc

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: ENCBS680BNG at ENCODE; https://www.encodeproject.org/ENCBS680BNG/


title: Control ChIP-seq from whole organism (ENCLB640KFH)

description:
https://www.encodeproject.org/experiments/ENCSR465VBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing grau-eGFP fusion proteins.
experiment encode accession: ENCSR465VBZ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB640KFH
size range: 200-800

source_name: Drosophila melanogaster strain grau mixed sex embryo (0-24 hours) insertion targeting D. melanogaster grau

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to grau

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS279AJD at ENCODE; https://www.encodeproject.org/ENCBS279AJD/


title: TF ChIP-seq from whole organism (ENCLB205LSV)

description:
https://www.encodeproject.org/experiments/ENCSR465HPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR465HPZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR668TPK
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB205LSV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Abd-B-GFP embryo (4-20 hours) insertion targeting D. melanogaster Abd-B

value: Abd-B

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Abd-B

value: not collected

value: ENCBS687SAQ at ENCODE; https://www.encodeproject.org/ENCBS687SAQ/


title: Control ChIP-seq from whole organism (ENCLB235XWP)

description:
https://www.encodeproject.org/experiments/ENCSR467AKB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing gl-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR467AKB
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB235XWP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gl mixed sex pupa (24 hours) insertion targeting D. melanogaster gl

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gl

value: pooled male and female

value: pupa

value: 24 hour

value: ENCBS296YDO at ENCODE; https://www.encodeproject.org/ENCBS296YDO/


title: TF ChIP-seq from whole organism (ENCLB434PSD)

description:
https://www.encodeproject.org/experiments/ENCSR929RAT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(var)3-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR929RAT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR074VTY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB434PSD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(var)3-9-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(var)3-9

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(var)3-9

value: Kevin White, UChicago

value: ENCBS721LFL at ENCODE; https://www.encodeproject.org/ENCBS721LFL/


title: Control ChIP-seq from whole organism (ENCLB370FED)

description:
https://www.encodeproject.org/experiments/ENCSR056IHU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR056IHU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB370FED
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS228TTW at ENCODE; https://www.encodeproject.org/ENCBS228TTW/


title: Control ChIP-seq from whole organism (ENCLB381RHC)

description:
https://www.encodeproject.org/experiments/ENCSR243FJF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR243FJF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB381RHC
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: L4 larva

value: ENCBS845FEU at ENCODE; https://www.encodeproject.org/ENCBS845FEU/


title: Control ChIP-seq from whole organism (ENCLB573LNA)

description:
https://www.encodeproject.org/experiments/ENCSR461LST/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1621-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR461LST
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB573LNA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1621 mixed sex prepupa (24 hours) insertion targeting D. melanogaster Coop

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1621

value: pooled male and female

value: prepupa

value: 24 hour

value: Kevin White

value: ENCBS312RTI at ENCODE; https://www.encodeproject.org/ENCBS312RTI/


title: Control ChIP-seq from whole organism (ENCLB802OON)

description:
https://www.encodeproject.org/experiments/ENCSR056IHU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR056IHU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB802OON
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: ENCBS783LAA at ENCODE; https://www.encodeproject.org/ENCBS783LAA/


title: Control ChIP-seq from whole organism (ENCLB590LRL)

description:
https://www.encodeproject.org/experiments/ENCSR056FAL/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR056FAL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB590LRL
size range: 150-350

source_name: Caenorhabditis elegans strain OP304 (unc-119(ed3) III; wgIs304) mixed sex L3 larva insertion targeting C. elegans fos-1

value: L3 larva

value: unknown

value: CGC

value: ENCBS392WQH at ENCODE; https://www.encodeproject.org/ENCBS392WQH/


title: Control ChIP-seq from whole organism (ENCLB096IPB)

description:
https://www.encodeproject.org/experiments/ENCSR462RAG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Lhr-eGFP fusion proteins.
experiment encode accession: ENCSR462RAG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB096IPB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Lhr-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster Lhr

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Lhr

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: ENCBS820AKU at ENCODE; https://www.encodeproject.org/ENCBS820AKU/


title: TF ChIP-seq from whole organism (ENCLB526EJL)

description:
https://www.encodeproject.org/experiments/ENCSR748WWE/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748WWE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR246AVX
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB526EJL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster psq

value: psq

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: pooled male and female

value: wandering third instar larva

value: ENCBS373BQJ at ENCODE; https://www.encodeproject.org/ENCBS373BQJ/


title: TF ChIP-seq from whole organism (ENCLB873WIR)

description:
https://www.encodeproject.org/experiments/ENCSR929RAT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(var)3-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR929RAT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR074VTY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB873WIR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(var)3-9

value: 0-24 hour

value: Kevin White

value: ENCBS215QKO at ENCODE; https://www.encodeproject.org/ENCBS215QKO/


title: Control ChIP-seq from whole organism (ENCLB834HCB)

description:
https://www.encodeproject.org/experiments/ENCSR461LST/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1621-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR461LST
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB834HCB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1621

value: prepupa

value: 24 hour

value: ENCBS362LEA at ENCODE; https://www.encodeproject.org/ENCBS362LEA/


title: TF ChIP-seq from whole organism (ENCLB873PHZ)

description:
https://www.encodeproject.org/experiments/ENCSR968GUV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10669-eGFP fusion proteins.
experiment encode accession: ENCSR968GUV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR283MGP
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB873PHZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10669-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster CG10669

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10669

value: 24 day

value: Kevin White, UChicago

value: ENCBS023HJJ at ENCODE; https://www.encodeproject.org/ENCBS023HJJ/


title: Control ChIP-seq from whole organism (ENCLB996ROZ)

description:
https://www.encodeproject.org/experiments/ENCSR056FAL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR056FAL
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB996ROZ
size range: 150-350

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS759PQH at ENCODE; https://www.encodeproject.org/ENCBS759PQH/


title: TF ChIP-seq from whole organism (ENCLB639PET)

description:
https://www.encodeproject.org/experiments/ENCSR748ZJA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748ZJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR046BPV
encode release date: 2018-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB639PET
fragmentation methods: sonication (Bioruptor generic)
size range: 200-275

source_name: Drosophila melanogaster strain Dif-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Dif

value: Dif

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dif

value: wandering third instar larva

value: Kevin White

value: ENCBS121VAQ at ENCODE; https://www.encodeproject.org/ENCBS121VAQ/


title: TF ChIP-seq from whole organism (ENCLB395VHR)

description:
https://www.encodeproject.org/experiments/ENCSR968GUV/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10669-eGFP fusion proteins.
experiment encode accession: ENCSR968GUV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR283MGP
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB395VHR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10669

value: prepupa

value: ENCBS333MOZ at ENCODE; https://www.encodeproject.org/ENCBS333MOZ/


title: TF ChIP-seq from whole organism (ENCLB434OZU)

description:
https://www.encodeproject.org/experiments/ENCSR170FMY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against R06F6.6 in L4 larva worms.
experiment encode accession: ENCSR170FMY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR038TET
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB434OZU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP416 (unc-119(tm4063) III; wgIs416) mixed sex L4 larva insertion targeting C. elegans ceh-62

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to R06F6.6

value: pooled male and female

value: L4 larva

value: Michael Snyder

value: ENCBS782QVO at ENCODE; https://www.encodeproject.org/ENCBS782QVO/


title: TF ChIP-seq from whole organism (ENCLB880TJI)

description:
https://www.encodeproject.org/experiments/ENCSR751FSX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10631-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR751FSX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR520BTD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB880TJI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10631

value: not collected

value: unknown

value: Kevin White, UChicago

value: white prepupa

value: ENCBS372KRD at ENCODE; https://www.encodeproject.org/ENCBS372KRD/


title: TF ChIP-seq from whole organism (ENCLB711BHU)

description:
https://www.encodeproject.org/experiments/ENCSR796MDV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17912-eGFP fusion proteins.
experiment encode accession: ENCSR796MDV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR962NZG
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB711BHU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17912-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster BuGZ

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17912

value: embryonic

value: 0-16 hour

value: Kevin White

value: ENCBS374BDI at ENCODE; https://www.encodeproject.org/ENCBS374BDI/


title: TF ChIP-seq from whole organism (ENCLB979YMU)

description:
https://www.encodeproject.org/experiments/ENCSR459CZO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4328-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR459CZO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR032KWU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB979YMU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4328-GFP mixed sex embryo (8-24 hours) insertion targeting D. melanogaster CG4328

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4328

value: pooled male and female

value: ENCBS862YCL at ENCODE; https://www.encodeproject.org/ENCBS862YCL/


title: TF ChIP-seq from whole organism (ENCLB899YTN)

description:
https://www.encodeproject.org/experiments/ENCSR459CZO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4328-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR459CZO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR032KWU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB899YTN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS870QYU at ENCODE; https://www.encodeproject.org/ENCBS870QYU/


title: TF ChIP-seq from whole organism (ENCLB559SDO)

description:
https://www.encodeproject.org/experiments/ENCSR631PLV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fru-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR631PLV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR117DPS
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB559SDO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fru-MiMIC-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster fru

value: fru

value: D. mel line contraining an intronic eGFP exon to create a fru-GFP fusion gene

value: wandering third instar larva

value: Hugo Bellen

value: ENCBS760HBI at ENCODE; https://www.encodeproject.org/ENCBS760HBI/


title: TF ChIP-seq from whole organism (ENCLB404GMY)

description:
https://www.encodeproject.org/experiments/ENCSR748WWE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748WWE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR246AVX
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB404GMY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: psq

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: unknown

value: Kevin White, UChicago

value: ENCBS633YJG at ENCODE; https://www.encodeproject.org/ENCBS633YJG/


title: TF ChIP-seq from whole organism (ENCLB844BKW)

description:
https://www.encodeproject.org/experiments/ENCSR459CZO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4328-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR459CZO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR032KWU
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB844BKW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: embryonic

value: Kevin White

value: ENCBS263LIP at ENCODE; https://www.encodeproject.org/ENCBS263LIP/


title: TF ChIP-seq from whole organism (ENCLB000ANL)

description:
https://www.encodeproject.org/experiments/ENCSR796MDV/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17912-eGFP fusion proteins.
experiment encode accession: ENCSR796MDV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR962NZG
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB000ANL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17912

value: pooled male and female

value: 0-16 hour

value: ENCBS706IHE at ENCODE; https://www.encodeproject.org/ENCBS706IHE/


title: TF ChIP-seq from whole organism (ENCLB580XER)

description:
https://www.encodeproject.org/experiments/ENCSR965XSS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9437-eGFP fusion proteins.
experiment encode accession: ENCSR965XSS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR529PRD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB580XER
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9437-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster hng1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9437

value: ENCBS435MBX at ENCODE; https://www.encodeproject.org/ENCBS435MBX/


title: TF ChIP-seq from whole organism (ENCLB637TYQ)

description:
https://www.encodeproject.org/experiments/ENCSR748WWE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR748WWE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR246AVX
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB637TYQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: psq

value: wandering third instar larva

value: ENCBS116FAX at ENCODE; https://www.encodeproject.org/ENCBS116FAX/


title: TF ChIP-seq from whole organism (ENCLB092XIT)

description:
https://www.encodeproject.org/experiments/ENCSR169GBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against PRC-1 in YA worms.
experiment encode accession: ENCSR169GBD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR086JMC
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB092XIT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL517 mixed sex young adult insertion targeting C. elegans rpc-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS821VGP at ENCODE; https://www.encodeproject.org/ENCBS821VGP/


title: TF ChIP-seq from whole organism (ENCLB009GTL)

description:
https://www.encodeproject.org/experiments/ENCSR465HPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR465HPZ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR668TPK
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB009GTL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Abd-B

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Abd-B

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS756WSX at ENCODE; https://www.encodeproject.org/ENCBS756WSX/


title: TF ChIP-seq from whole organism (ENCLB603TXG)

description:
https://www.encodeproject.org/experiments/ENCSR170FMY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against R06F6.6 in L4 larva worms.
experiment encode accession: ENCSR170FMY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR038TET
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB603TXG
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to R06F6.6

value: pooled male and female

value: L4 larva

value: ENCBS416GTP at ENCODE; https://www.encodeproject.org/ENCBS416GTP/


title: TF ChIP-seq from whole organism (ENCLB891FDC)

description:
https://www.encodeproject.org/experiments/ENCSR169GBD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against PRC-1 in YA worms.
experiment encode accession: ENCSR169GBD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR086JMC
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB891FDC
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: young adult

value: unknown

value: ENCBS689ASJ at ENCODE; https://www.encodeproject.org/ENCBS689ASJ/