title: TF ChIP-seq from whole organism (ENCLB382DLU)

description:
https://www.encodeproject.org/experiments/ENCSR183WTG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183WTG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860PIR
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB382DLU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2202

value: not collected

value: 0-12 hour

tag: source

value: ENCBS995EVR at ENCODE; https://www.encodeproject.org/ENCBS995EVR/


title: TF ChIP-seq from whole organism (ENCLB376WGN)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR806QUX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing REC-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR806QUX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR007JPR
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB376WGN
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain YL581 hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rec-8

tag: antibody

value: whole organism

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REC-8

tag: Sex

value: hermaphrodite

tag: dev stage

value: young adult

tag: age

value: unknown

tag: lab

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

tag: link

value: ENCBS758HOQ at ENCODE; https://www.encodeproject.org/ENCBS758HOQ/


title: TF ChIP-seq from whole organism (ENCLB465LFZ)

description:
https://www.encodeproject.org/experiments/ENCSR245QIG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR245QIG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR761BHV
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB465LFZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG8290 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ADD1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ADD1

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS959YZS at ENCODE; https://www.encodeproject.org/ENCBS959YZS/


title: TF ChIP-seq from whole organism (ENCLB537DFT)

description:
https://www.encodeproject.org/experiments/ENCSR806QUX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing REC-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR806QUX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR007JPR
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB537DFT
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: not applicable

value: ENCBS695VIL at ENCODE; https://www.encodeproject.org/ENCBS695VIL/


title: TF ChIP-seq from whole organism (ENCLB598WSF)

description:
https://www.encodeproject.org/experiments/ENCSR549VKC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbx-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR549VKC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR170TEC
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB598WSF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW10470 (st10470 [tbx-8::TY1::EGFP::3xFLAG; unc-119(+)]; unc-119(ed3)) mixed sex mixed stage (embryo) (2.5 hours) using egg bleaching insertion targeting C. elegans tbx-8

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-8.

value: mixed stage (embryonic)

value: 2.5 hour

value: egg bleaching

value: ENCBS307YXH at ENCODE; https://www.encodeproject.org/ENCBS307YXH/


title: TF ChIP-seq from whole organism (ENCLB780TUB)

description:
https://www.encodeproject.org/experiments/ENCSR857HWD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F57A8.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR857HWD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR662CJH
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB780TUB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP757 (unc-119(tm4063); wgls757 [F57A8.1::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex young adult (65 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F57A8.1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F57A8.1.

value: young adult

value: 65 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS202RPB at ENCODE; https://www.encodeproject.org/ENCBS202RPB/


title: TF ChIP-seq from whole organism (ENCLB494NKT)

description:
https://www.encodeproject.org/experiments/ENCSR857HWD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F57A8.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR857HWD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR662CJH
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB494NKT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: ENCBS175CFV at ENCODE; https://www.encodeproject.org/ENCBS175CFV/


title: TF ChIP-seq from whole organism (ENCLB318QCV)

description:
https://www.encodeproject.org/experiments/ENCSR475ZYS/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ETS-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR475ZYS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR420LNH
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB318QCV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP487 hermaphrodite early embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans ets-7

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ETS-7

value: hermaphrodite

value: early embryonic

value: unknown

value: hour

value: ENCBS862TNR at ENCODE; https://www.encodeproject.org/ENCBS862TNR/


title: Control ChIP-seq from whole organism (ENCLB828IQR)

description:
https://www.encodeproject.org/experiments/ENCSR067XAN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR067XAN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB828IQR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gsb-n embryo (4-14 hours) insertion targeting D. melanogaster gsb-n

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gsb-n

value: not collected

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS105SKT at ENCODE; https://www.encodeproject.org/ENCBS105SKT/


title: Control ChIP-seq from whole organism (ENCLB919CTG)

description:
https://www.encodeproject.org/experiments/ENCSR671YDD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ALY-1-eGFP fusion proteins.
experiment encode accession: ENCSR671YDD
assay title: Control ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626XZR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB919CTG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP502 (unc-119(tm4063) III; wgIs502) hermaphrodite early embryo 0 hours post synchronization using egg bleaching insertion targeting C. elegans aly-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ALY-1

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS139ONN at ENCODE; https://www.encodeproject.org/ENCBS139ONN/


title: TF ChIP-seq from whole organism (ENCLB220RYH)

description:
https://www.encodeproject.org/experiments/ENCSR066ITF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR066ITF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR033NNL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB220RYH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain stwl embryo (0-10 hours) insertion targeting D. melanogaster stwl

value: stwl

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to stwl

value: 0-10 hour

value: ENCBS458DHE at ENCODE; https://www.encodeproject.org/ENCBS458DHE/


title: TF ChIP-seq from whole organism (ENCLB705BBI)

description:
https://www.encodeproject.org/experiments/ENCSR475ZYS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ETS-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR475ZYS
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR420LNH
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB705BBI
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ETS-7

value: hermaphrodite

value: early embryonic

value: unknown

value: hour

value: ENCBS439WPQ at ENCODE; https://www.encodeproject.org/ENCBS439WPQ/


title: Control ChIP-seq from whole organism (ENCLB815SQF)

description:
https://www.encodeproject.org/experiments/ENCSR975BES/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing FKH-4-eGFP fusion proteins.
experiment encode accession: ENCSR975BES
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB815SQF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP100 (unc-119(tm4063) III; wgIs100) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans fkh-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-4

value: L1 larva

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS109MIV at ENCODE; https://www.encodeproject.org/ENCBS109MIV/


title: Control ChIP-seq from whole organism (ENCLB440WIX)

description:
https://www.encodeproject.org/experiments/ENCSR065VFN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing NfI-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR065VFN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB440WIX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain NfI-GFP mixed sex embryo (12-24 hours) insertion targeting D. melanogaster NfI

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NfI

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS162ESC at ENCODE; https://www.encodeproject.org/ENCBS162ESC/


title: TF ChIP-seq from whole organism (ENCLB748PAV)

description:
https://www.encodeproject.org/experiments/ENCSR470XFF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing XBP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR470XFF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR446MQH
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB748PAV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP506 (unc-119(tm4063) III; wgIs506) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans xbp-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to XBP-1

value: hermaphrodite

value: Valerie Reinke

value: ENCBS876AGY at ENCODE; https://www.encodeproject.org/ENCBS876AGY/


title: Control ChIP-seq from whole organism (ENCLB854PJF)

description:
https://www.encodeproject.org/experiments/ENCSR546SLI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZIM-3-eGFP fusion proteins.
experiment encode accession: ENCSR546SLI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB854PJF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP581 (unc-119(tm4063) III; wgIs581) mixed sex young adult 54.5 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans zim-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZIM-3

value: young adult

value: unknown

value: hour

value: ENCBS595YGG at ENCODE; https://www.encodeproject.org/ENCBS595YGG/


title: TF ChIP-seq from whole organism (ENCLB614DEL)

description:
https://www.encodeproject.org/experiments/ENCSR336ZDD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17186-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR336ZDD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR506LYS
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB614DEL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17186-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG17186

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17186

value: 0-14 hour

value: ENCBS457OOS at ENCODE; https://www.encodeproject.org/ENCBS457OOS/


title: TF ChIP-seq from whole organism (ENCLB395CZL)

description:
https://www.encodeproject.org/experiments/ENCSR968HCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-130-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR968HCJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR559HIP
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB395CZL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain AGK541 ((armSi1[Pmex5::UNC-130::GFP::tbb-2 3'UTR; cb-unc-119(+)II]; unc-119(ed3)III; niDf199IV)) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elega...

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-130

value: L4 larva

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS027TPF at ENCODE; https://www.encodeproject.org/ENCBS027TPF/


title: TF ChIP-seq from whole organism (ENCLB818RAF)

description:
https://www.encodeproject.org/experiments/ENCSR470XFF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing XBP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR470XFF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR446MQH
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB818RAF
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to XBP-1

value: hermaphrodite

value: L1 larva

value: ENCBS530QWT at ENCODE; https://www.encodeproject.org/ENCBS530QWT/


title: TF ChIP-seq from whole organism (ENCLB164SHB)

description:
https://www.encodeproject.org/experiments/ENCSR684PHU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-22-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR684PHU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR651DQT
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB164SHB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP676 (unc-119(tm4063); wgIs676 [ztf-22::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex young adult (68 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-22

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-22.

value: pooled male and female

value: young adult

value: 68 hour

value: Valerie Reinke

value: ENCBS933COA at ENCODE; https://www.encodeproject.org/ENCBS933COA/


title: TF ChIP-seq from whole organism (ENCLB245RAL)

description:
https://www.encodeproject.org/experiments/ENCSR542ICA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR542ICA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR990KPW
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB245RAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP208 (unc-119(ed3) III; wgIs208) mixed sex young adult (78 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-27

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-270.

value: 78 hour

value: ENCBS902YEG at ENCODE; https://www.encodeproject.org/ENCBS902YEG/


title: TF ChIP-seq from whole organism (ENCLB417HAU)

description:
https://www.encodeproject.org/experiments/ENCSR066ITF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR066ITF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR033NNL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB417HAU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: stwl

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to stwl

value: not collected

value: embryonic

value: 0-10 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS363BVH at ENCODE; https://www.encodeproject.org/ENCBS363BVH/


title: Control ChIP-seq from whole organism (ENCLB117XCH)

description:
https://www.encodeproject.org/experiments/ENCSR542XFG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hlh-17-eGFP fusion proteins.
experiment encode accession: ENCSR542XFG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB117XCH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP643 (wgIs643 [hlh-17::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans hlh-17

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-17.

value: pooled male and female

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS495YQL at ENCODE; https://www.encodeproject.org/ENCBS495YQL/


title: TF ChIP-seq from whole organism (ENCLB265HPY)

description:
https://www.encodeproject.org/experiments/ENCSR066ITF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR066ITF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR033NNL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB265HPY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: stwl

value: whole organism

value: ENCBS303SBG at ENCODE; https://www.encodeproject.org/ENCBS303SBG/


title: TF ChIP-seq from whole organism (ENCLB144ATH)

description:
https://www.encodeproject.org/experiments/ENCSR336ZDD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17186-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR336ZDD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR506LYS
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB144ATH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17186

value: embryonic

value: 0-14 hour

value: ENCBS322CGC at ENCODE; https://www.encodeproject.org/ENCBS322CGC/


title: TF ChIP-seq from whole organism (ENCLB788WWI)

description:
https://www.encodeproject.org/experiments/ENCSR542ICA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-27-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR542ICA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR990KPW
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB788WWI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-270.

value: young adult

value: 78 hour

value: Valerie Reinke

value: ENCBS338SSS at ENCODE; https://www.encodeproject.org/ENCBS338SSS/


title: TF ChIP-seq from whole organism (ENCLB257BNV)

description:
https://www.encodeproject.org/experiments/ENCSR968HCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-130-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR968HCJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR559HIP
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB257BNV
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-130

value: hermaphrodite

value: L4 larva

value: unknown

value: hour

value: ENCBS717YPJ at ENCODE; https://www.encodeproject.org/ENCBS717YPJ/


title: TF ChIP-seq from whole organism (ENCLB802UBU)

description:
https://www.encodeproject.org/experiments/ENCSR245QIG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR245QIG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR761BHV
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB802UBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ADD1

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS374ORR at ENCODE; https://www.encodeproject.org/ENCBS374ORR/


title: TF ChIP-seq from whole organism (ENCLB312OWP)

description:
https://www.encodeproject.org/experiments/ENCSR336ZDD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17186-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR336ZDD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR506LYS
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB312OWP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17186

value: embryonic

value: 0-14 hour

value: ENCBS649AKD at ENCODE; https://www.encodeproject.org/ENCBS649AKD/


title: TF ChIP-seq from whole organism (ENCLB602GAK)

description:
https://www.encodeproject.org/experiments/ENCSR541RUY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F10E7.11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR541RUY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR314YMV
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB602GAK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP658 (unc-119(tm4063) III; wgIs658) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F10E7.11

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F10E7.11

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS862RHM at ENCODE; https://www.encodeproject.org/ENCBS862RHM/


title: Control ChIP-seq from whole organism (ENCLB804SYB)

description:
https://www.encodeproject.org/experiments/ENCSR544QPD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-6-eGFP fusion proteins.
experiment encode accession: ENCSR544QPD
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB804SYB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP748 (wgIs748(ceh-6::TY1 EGFP 3xFLAG(P000007_A02_9H01);unc-119(+));unc-119 (ed3); VC2010) mixed sex late embryo (3.3 hours) using egg bleaching insertion targeting C. elegans ceh-6

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-6.

value: pooled male and female

value: late embryonic

value: 3.3 hour

value: egg bleaching

value: ENCBS748ENK at ENCODE; https://www.encodeproject.org/ENCBS748ENK/


title: TF ChIP-seq from whole organism (ENCLB445PPO)

description:
https://www.encodeproject.org/experiments/ENCSR060CFV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR060CFV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR551PYQ
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB445PPO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7745 embryo (0-12 hours) insertion targeting D. melanogaster CG7745

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7745

value: not collected

value: embryonic

value: 0-12 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS903ARF at ENCODE; https://www.encodeproject.org/ENCBS903ARF/


title: Control ChIP-seq from whole organism (ENCLB368FZF)

description:
https://www.encodeproject.org/experiments/ENCSR782TWP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HIM-1-eGFP fusion proteins.
experiment encode accession: ENCSR782TWP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB368FZF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL577 hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans him-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIM-1

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS984RAN at ENCODE; https://www.encodeproject.org/ENCBS984RAN/


title: Control ChIP-seq from whole organism (ENCLB634EPY)

description:
https://www.encodeproject.org/experiments/ENCSR961THO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing IRX-1-eGFP fusion proteins.
experiment encode accession: ENCSR961THO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB634EPY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP536 (unc-119(tm4063) III; wgIs536) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans irx-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to IRX-1

value: L1 larva

value: L1 larva starved after bleaching

value: ENCBS377NYK at ENCODE; https://www.encodeproject.org/ENCBS377NYK/


title: TF ChIP-seq from whole organism (ENCLB096QVP)

description:
https://www.encodeproject.org/experiments/ENCSR684PHU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-22-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR684PHU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR651DQT
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB096QVP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-22.

value: pooled male and female

value: 68 hour

value: ENCBS957NNT at ENCODE; https://www.encodeproject.org/ENCBS957NNT/


title: TF ChIP-seq from whole organism (ENCLB458TTT)

description:
https://www.encodeproject.org/experiments/ENCSR060CFV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR060CFV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR551PYQ
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB458TTT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7745

value: not collected

value: embryonic

value: 0-12 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS304ZEL at ENCODE; https://www.encodeproject.org/ENCBS304ZEL/


title: TF ChIP-seq from whole organism (ENCLB929ZCP)

description:
https://www.encodeproject.org/experiments/ENCSR541RUY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F10E7.11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR541RUY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR314YMV
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB929ZCP
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F10E7.11

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS284ZUB at ENCODE; https://www.encodeproject.org/ENCBS284ZUB/


title: TF ChIP-seq from whole organism (ENCLB578LZF)

description:
https://www.encodeproject.org/experiments/ENCSR059YLP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4318-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059YLP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR216KNP
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB578LZF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4318-GFP mixed sex prepupa (48 days) insertion targeting D. melanogaster CG4318

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4318

value: pooled male and female

value: prepupa

value: 48 day

value: ENCBS312BPZ at ENCODE; https://www.encodeproject.org/ENCBS312BPZ/


title: Control ChIP-seq from whole organism (ENCLB986YNO)

description:
https://www.encodeproject.org/experiments/ENCSR948SUV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing RNT-1-eGFP fusion proteins.
experiment encode accession: ENCSR948SUV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB986YNO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP462 (unc-119(tm4063) III; wgIs462) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans rnt-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RNT-1

value: hermaphrodite

value: late embryonic

value: egg bleaching

value: ENCBS942LWB at ENCODE; https://www.encodeproject.org/ENCBS942LWB/


title: TF ChIP-seq from whole organism (ENCLB084JER)

description:
https://www.encodeproject.org/experiments/ENCSR374WWP/
***************
biological replicate number: 1
technical replicate number: 2
description: ChIP-seq on transgenic worms expressing Y5F2A.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR374WWP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR809DRY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB084JER
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP682 (unc-119(tm4063); wgIs682 [Y5F2A.4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans Y5F2A.4

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y5F2A.4.

value: L4 larva

value: 48 hour

value: L1 larva starved after bleaching

value: ENCBS300USW at ENCODE; https://www.encodeproject.org/ENCBS300USW/


title: Control ChIP-seq from whole organism (ENCLB280LGW)

description:
https://www.encodeproject.org/experiments/ENCSR336MGM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing BEAF-32-eGFP fusion proteins.
experiment encode accession: ENCSR336MGM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB280LGW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain BEAF-32-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster BEAF-32

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to BEAF-32

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS228FSE at ENCODE; https://www.encodeproject.org/ENCBS228FSE/


title: TF ChIP-seq from whole organism (ENCLB066XER)

description:
https://www.encodeproject.org/experiments/ENCSR059YLP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4318-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059YLP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR216KNP
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB066XER
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4318

value: pooled male and female

value: prepupa

value: 48 day

value: ENCBS645PRO at ENCODE; https://www.encodeproject.org/ENCBS645PRO/


title: TF ChIP-seq from whole organism (ENCLB798MKY)

description:
https://www.encodeproject.org/experiments/ENCSR844VCY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-48-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR844VCY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR106DTT
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB798MKY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP631 (unc-119(tm4063) III; wgIs631) mixed sex late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-48

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-48

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS875OLT at ENCODE; https://www.encodeproject.org/ENCBS875OLT/


title: TF ChIP-seq from whole organism (ENCLB797OAA)

description:
https://www.encodeproject.org/experiments/ENCSR955ZJN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR955ZJN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR561ULE
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB797OAA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans elt-2

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: L3 larva

value: L1 larva starved after bleaching

value: ENCBS524FHL at ENCODE; https://www.encodeproject.org/ENCBS524FHL/


title: TF ChIP-seq from whole organism (ENCLB589EUR)

description:
https://www.encodeproject.org/experiments/ENCSR955ZWH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing T07F8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR955ZWH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR347AVI
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB589EUR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP478 (unc-119(tm4063) III; wgIs478) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans T07F8.4

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T07F8.4

value: young adult

value: ENCBS624UVV at ENCODE; https://www.encodeproject.org/ENCBS624UVV/


title: TF ChIP-seq from whole organism (ENCLB528WAD)

description:
https://www.encodeproject.org/experiments/ENCSR955ZWH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing T07F8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR955ZWH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR347AVI
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB528WAD
fragmentation methods: sonication (generic microtip)

value: whole organism

value: ENCBS569GGK at ENCODE; https://www.encodeproject.org/ENCBS569GGK/


title: TF ChIP-seq from whole organism (ENCLB881TLZ)

description:
https://www.encodeproject.org/experiments/ENCSR059YLP/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4318-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059YLP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR216KNP
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB881TLZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4318

value: pooled male and female

value: prepupa

value: 48 day

value: Kevin White, UChicago

value: Kevin White

value: ENCBS085SEU at ENCODE; https://www.encodeproject.org/ENCBS085SEU/


title: TF ChIP-seq from whole organism (ENCLB422GEM)

description:
https://www.encodeproject.org/experiments/ENCSR537QPX/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing T26A5.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR537QPX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR504CUV
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB422GEM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP598 (unc-119(tm4063) III; wgIs598) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans T26A5.8

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T26A5.8

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS937IYB at ENCODE; https://www.encodeproject.org/ENCBS937IYB/


title: Control ChIP-seq from whole organism (ENCLB448JTN)

description:
https://www.encodeproject.org/experiments/ENCSR376RRP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing flh-1-eGFP fusion proteins.
experiment encode accession: ENCSR376RRP
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB448JTN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP702 (unc-119(tm4063); wgIs702 [flh-1::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (2 hours) using egg bleaching insertion targeting C. elegans flh-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FLH-1.

value: mixed stage (embryonic)

value: 2 hour

value: egg bleaching

value: ENCBS978VCE at ENCODE; https://www.encodeproject.org/ENCBS978VCE/


title: TF ChIP-seq from whole organism (ENCLB332BZB)

description:
https://www.encodeproject.org/experiments/ENCSR059LML/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32006-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059LML
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR293DLH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB332BZB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG32006-GFP mixed sex prepupa (48 days) insertion targeting D. melanogaster CG32006

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG32006

value: pooled male and female

value: prepupa

value: 48 day

value: ENCBS938NRH at ENCODE; https://www.encodeproject.org/ENCBS938NRH/


title: TF ChIP-seq from whole organism (ENCLB450OUZ)

description:
https://www.encodeproject.org/experiments/ENCSR059LML/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32006-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059LML
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR293DLH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB450OUZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Kevin White, UChicago

value: Kevin White

value: ENCBS673TVJ at ENCODE; https://www.encodeproject.org/ENCBS673TVJ/


title: TF ChIP-seq from whole organism (ENCLB934BKQ)

description:
https://www.encodeproject.org/experiments/ENCSR059LML/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32006-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR059LML
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR293DLH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB934BKQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS601JIQ at ENCODE; https://www.encodeproject.org/ENCBS601JIQ/


title: Control ChIP-seq from BLaER1 (ENCLB040JTK)

description:
https://www.encodeproject.org/experiments/ENCSR354HOM/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 168 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR354HOM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB040JTK
fragmentation methods: shearing (Covaris generic)

organism: Homo sapiens

source_name: Homo sapiens BLaER1 cell line 168 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1

tag: line

value: cell line

value: not applicable

value: female

value: unknown

value: Roderic Guigo, CRG

value: Thomas Graf

tag: treatments

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS421XOH at ENCODE; https://www.encodeproject.org/ENCBS421XOH/


title: TF ChIP-seq from whole organism (ENCLB722PGJ)

description:
https://www.encodeproject.org/experiments/ENCSR955ZJN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR955ZJN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR561ULE
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB722PGJ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: L3 larva

value: Valerie Reinke, Yale

tag: source

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS103AML at ENCODE; https://www.encodeproject.org/ENCBS103AML/


title: TF ChIP-seq from whole organism (ENCLB054CUB)

description:
https://www.encodeproject.org/experiments/ENCSR374WWP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y5F2A.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR374WWP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR809DRY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB054CUB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

tag: antibody

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y5F2A.4.

value: pooled male and female

value: L4 larva

value: 48 hour

value: ENCBS300USW at ENCODE; https://www.encodeproject.org/ENCBS300USW/


title: TF ChIP-seq from whole organism (ENCLB073PWK)

description:
https://www.encodeproject.org/experiments/ENCSR450GPA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing B0035.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450GPA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR760TJW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB073PWK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain xtl1186 hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans znf-207

tag: biosample encode accession

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to B0035.1

value: young adult

value: unknown

value: ENCBS092QNH at ENCODE; https://www.encodeproject.org/ENCBS092QNH/


title: TF ChIP-seq from whole organism (ENCLB208QHG)

description:
https://www.encodeproject.org/experiments/ENCSR336HCG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG30431-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR336HCG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR629JCM
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB208QHG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG30431-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG30431

value: whole organism

tag: collection date

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG30431

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS405YWP at ENCODE; https://www.encodeproject.org/ENCBS405YWP/


title: Control ChIP-seq from BLaER1 (ENCLB906BXU)

description:
https://www.encodeproject.org/experiments/ENCSR354HOM/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 168 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR354HOM
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB906BXU
fragmentation methods: shearing (Covaris generic)

value: cell line

tag: geographic location

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS428LHJ at ENCODE; https://www.encodeproject.org/ENCBS428LHJ/


title: TF ChIP-seq from whole organism (ENCLB484PUH)

description:
https://www.encodeproject.org/experiments/ENCSR450GPA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing B0035.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450GPA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR760TJW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB484PUH
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

tag: encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to B0035.1

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS453WJS at ENCODE; https://www.encodeproject.org/ENCBS453WJS/


title: TF ChIP-seq from whole organism (ENCLB526ARX)

description:
https://www.encodeproject.org/experiments/ENCSR282OTW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-24-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR282OTW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR194XZB
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB526ARX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP673 (unc-119 (tm4063) III; wgIs673) mixed sex late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-24

value: whole organism

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-24

value: pooled male and female

value: late embryonic

value: unknown

value: egg bleaching

value: ENCBS385GLY at ENCODE; https://www.encodeproject.org/ENCBS385GLY/


title: TF ChIP-seq from whole organism (ENCLB565OWO)

description:
https://www.encodeproject.org/experiments/ENCSR537QPX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing T26A5.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR537QPX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR504CUV
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB565OWO
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T26A5.8

tag: Sex

value: young adult

value: ENCBS438SZQ at ENCODE; https://www.encodeproject.org/ENCBS438SZQ/


title: TF ChIP-seq from whole organism (ENCLB140XAG)

description:
https://www.encodeproject.org/experiments/ENCSR282OTW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-24-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR282OTW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR194XZB
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB140XAG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

tag: dev stage

value: ENCBS004TON at ENCODE; https://www.encodeproject.org/ENCBS004TON/


title: TF ChIP-seq from whole organism (ENCLB409KPP)

description:
https://www.encodeproject.org/experiments/ENCSR336HCG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG30431-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR336HCG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR629JCM
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB409KPP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG30431

value: embryonic

tag: age

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS440MXQ at ENCODE; https://www.encodeproject.org/ENCBS440MXQ/


title: Control ChIP-seq from whole organism (ENCLB010IFT)

description:
https://www.encodeproject.org/experiments/ENCSR449ROG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MES-2-eGFP fusion proteins.
experiment encode accession: ENCSR449ROG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB010IFT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP248 hermaphrodite L4 larva insertion targeting C. elegans mes-2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MES-2

value: hermaphrodite

value: L4 larva

tag: lab

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS744EAP at ENCODE; https://www.encodeproject.org/ENCBS744EAP/


title: Control ChIP-seq from whole organism (ENCLB812BKV)

description:
https://www.encodeproject.org/experiments/ENCSR792LGD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-90-eGFP fusion proteins.
experiment encode accession: ENCSR792LGD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB812BKV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP483 (unc-119(tm4063) III; wgIs483) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-90

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-90

value: L1 larva

value: unknown

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: hour

value: ENCBS199WKT at ENCODE; https://www.encodeproject.org/ENCBS199WKT/


title: Control ChIP-seq from whole organism (ENCLB199ZUR)

description:
https://www.encodeproject.org/experiments/ENCSR654ODD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-80-eGFP fusion proteins.
experiment encode accession: ENCSR654ODD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB199ZUR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP460 (unc-119(tm4063) III; wgIs460) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-80

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-80

value: young adult

tag: post synchronization time

value: ENCBS106OEB at ENCODE; https://www.encodeproject.org/ENCBS106OEB/


title: TF ChIP-seq from whole organism (ENCLB525GRJ)

description:
https://www.encodeproject.org/experiments/ENCSR374WWP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y5F2A.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR374WWP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR809DRY
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB525GRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y5F2A.4.

value: pooled male and female

value: 48 hour

value: ENCBS163CYT at ENCODE; https://www.encodeproject.org/ENCBS163CYT/


title: Control ChIP-seq from whole organism (ENCLB264RAL)

description:
https://www.encodeproject.org/experiments/ENCSR335XZL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335XZL
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB264RAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sp1-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Sp1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sp1

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS061FML at ENCODE; https://www.encodeproject.org/ENCBS061FML/


title: Control ChIP-seq from whole organism (ENCLB234LEC)

description:
https://www.encodeproject.org/experiments/ENCSR446MQH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing XBP-1-eGFP fusion proteins.
experiment encode accession: ENCSR446MQH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB234LEC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP506 (unc-119(tm4063) III; wgIs506) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans xbp-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to XBP-1

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

tag: post synchronization time units

value: hour

value: ENCBS151TDR at ENCODE; https://www.encodeproject.org/ENCBS151TDR/


title: TF ChIP-seq from whole organism (ENCLB751WYY)

description:
https://www.encodeproject.org/experiments/ENCSR281LRS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR281LRS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR113XIS
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB751WYY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP739 (unc-119(tm4063); wgIs739 [ceh-19::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex late embryo (5 hours) using egg bleaching insertion targeting C. elegans ceh-19

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-19.

value: pooled male and female

value: late embryonic

value: 5 hour

value: egg bleaching

tag: link

value: ENCBS925IOD at ENCODE; https://www.encodeproject.org/ENCBS925IOD/


title: Control ChIP-seq from BLaER1 (ENCLB260UHI)

description:
https://www.encodeproject.org/experiments/ENCSR255SDP/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 18 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR255SDP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB260UHI
fragmentation methods: shearing (Covaris generic)

source_name: Homo sapiens BLaER1 cell line 18 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1

tag: line

value: cell line

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS172BJM at ENCODE; https://www.encodeproject.org/ENCBS172BJM/


title: TF ChIP-seq from whole organism (ENCLB717XZR)

description:
https://www.encodeproject.org/experiments/ENCSR335WXQ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8359-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335WXQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR215MXM
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB717XZR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8359-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster hng2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8359

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS146VYW at ENCODE; https://www.encodeproject.org/ENCBS146VYW/


title: TF ChIP-seq from whole organism (ENCLB177VNO)

description:
https://www.encodeproject.org/experiments/ENCSR943FFC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR943FFC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR830PLY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB177VNO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP496 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-18

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-18

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS838AHE at ENCODE; https://www.encodeproject.org/ENCBS838AHE/


title: TF ChIP-seq from whole organism (ENCLB492WTA)

description:
https://www.encodeproject.org/experiments/ENCSR281LRS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR281LRS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR113XIS
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB492WTA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-19.

value: pooled male and female

value: late embryonic

value: 5 hour

value: egg bleaching

value: ENCBS235CWJ at ENCODE; https://www.encodeproject.org/ENCBS235CWJ/


title: TF ChIP-seq from whole organism (ENCLB518FMV)

description:
https://www.encodeproject.org/experiments/ENCSR943FFC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR943FFC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR830PLY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB518FMV
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: ENCBS608TFM at ENCODE; https://www.encodeproject.org/ENCBS608TFM/


title: TF ChIP-seq from whole organism (ENCLB290FCX)

description:
https://www.encodeproject.org/experiments/ENCSR272KZJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LSY-12-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR272KZJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR661GOR
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB290FCX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP568 (unc-119(tm4063) III; wgIs568) mixed sex L3 larva 43 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans lsy-12

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-12

value: L3 larva

value: ENCBS931EWW at ENCODE; https://www.encodeproject.org/ENCBS931EWW/


title: Control ChIP-seq from BLaER1 (ENCLB624ZSM)

description:
https://www.encodeproject.org/experiments/ENCSR255SDP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 18 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR255SDP
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB624ZSM
fragmentation methods: shearing (Covaris generic)

value: cell line

value: female

value: unknown

value: Roderic Guigo, CRG

value: Thomas Graf

tag: treatments

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS366SYI at ENCODE; https://www.encodeproject.org/ENCBS366SYI/


title: TF ChIP-seq from whole organism (ENCLB430KPU)

description:
https://www.encodeproject.org/experiments/ENCSR335WXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8359-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335WXQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR215MXM
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB430KPU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8359

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

tag: source

value: Kevin White

value: ENCBS722CBL at ENCODE; https://www.encodeproject.org/ENCBS722CBL/


title: TF ChIP-seq from whole organism (ENCLB721SJQ)

description:
https://www.encodeproject.org/experiments/ENCSR371ICA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing t20f7.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR371ICA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR560IUO
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB721SJQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP754 (wgIs754 [T20F7.1::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans T20F7.1

tag: antibody

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T20F7.1.

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS658LCZ at ENCODE; https://www.encodeproject.org/ENCBS658LCZ/


title: TF ChIP-seq from whole organism (ENCLB212MIA)

description:
https://www.encodeproject.org/experiments/ENCSR335NNR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335NNR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR308YQB
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB212MIA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain nerfin-1 mixed sex embryo (4-16 hours) insertion targeting D. melanogaster nerfin-1

tag: biosample encode accession

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to nerfin-1

value: ENCBS055SRV at ENCODE; https://www.encodeproject.org/ENCBS055SRV/


title: Control ChIP-seq from whole organism (ENCLB725NAU)

description:
https://www.encodeproject.org/experiments/ENCSR767ZKR/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-2-eGFP fusion proteins.
experiment encode accession: ENCSR767ZKR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB725NAU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP323 hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-2

tag: collection date

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-2

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS644TFA at ENCODE; https://www.encodeproject.org/ENCBS644TFA/


title: TF ChIP-seq from whole organism (ENCLB322KES)

description:
https://www.encodeproject.org/experiments/ENCSR335NNR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335NNR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR308YQB
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB322KES
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

tag: geographic location

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS527RLL at ENCODE; https://www.encodeproject.org/ENCBS527RLL/


title: TF ChIP-seq from whole organism (ENCLB986OYF)

description:
https://www.encodeproject.org/experiments/ENCSR264HFB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264HFB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR095URQ
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB986OYF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP740 (wgIs740 [lin-32::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching insertion targeting C. elegans lin-32

tag: encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-32.

value: mixed stage (embryonic)

value: 3 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS653MZV at ENCODE; https://www.encodeproject.org/ENCBS653MZV/


title: Control ChIP-seq from whole organism (ENCLB805FED)

description:
https://www.encodeproject.org/experiments/ENCSR263QJN/
***************
biological replicate number: 3
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ATF-7-eGFP fusion proteins.
experiment encode accession: ENCSR263QJN
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB805FED
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP638 (unc-119(tm4063) III; wgIs638) mixed sex young adult at L1 larva starved after bleaching stage insertion targeting C. elegans atf-7

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ATF-7

value: young adult

value: unknown

value: L1 larva starved after bleaching

value: ENCBS817OUC at ENCODE; https://www.encodeproject.org/ENCBS817OUC/


title: TF ChIP-seq from whole organism (ENCLB464TVI)

description:
https://www.encodeproject.org/experiments/ENCSR435FDM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-130-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR435FDM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR030PDY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB464TVI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain AGK541 ((armSi1[Pmex5::UNC-130::GFP::tbb-2 3'UTR; cb-unc-119(+)II]; unc-119(ed3)III; niDf199IV)) hermaphrodite young adult 56 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. el...

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-130

tag: Sex

value: hermaphrodite

value: hour

value: ENCBS972PVF at ENCODE; https://www.encodeproject.org/ENCBS972PVF/


title: TF ChIP-seq from whole organism (ENCLB851WYC)

description:
https://www.encodeproject.org/experiments/ENCSR240NHL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ac-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR240NHL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR575NOI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB851WYC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ac-GFP mixed sex embryo (0-8 hours) insertion targeting D. melanogaster ac

value: ac

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ac

value: pooled male and female

tag: dev stage

value: embryonic

value: 0-8 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS854AAQ at ENCODE; https://www.encodeproject.org/ENCBS854AAQ/


title: TF ChIP-seq from whole organism (ENCLB154ORX)

description:
https://www.encodeproject.org/experiments/ENCSR435FDM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-130-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR435FDM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR030PDY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB154ORX
fragmentation methods: sonication (generic microtip)

value: young adult

tag: age

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS078KXW at ENCODE; https://www.encodeproject.org/ENCBS078KXW/


title: TF ChIP-seq from whole organism (ENCLB972EIQ)

description:
https://www.encodeproject.org/experiments/ENCSR240NHL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ac-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR240NHL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR575NOI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB972EIQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

tag: lab

value: ENCBS385CQF at ENCODE; https://www.encodeproject.org/ENCBS385CQF/


title: TF ChIP-seq from whole organism (ENCLB268QUM)

description:
https://www.encodeproject.org/experiments/ENCSR264HFB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-32-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264HFB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR095URQ
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB268QUM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-32.

value: mixed stage (embryonic)

value: 3 hour

tag: worm synchronization stage

value: egg bleaching

value: ENCBS614HQG at ENCODE; https://www.encodeproject.org/ENCBS614HQG/


title: Control ChIP-seq from whole organism (ENCLB957XKQ)

description:
https://www.encodeproject.org/experiments/ENCSR263QJN/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ATF-7-eGFP fusion proteins.
experiment encode accession: ENCSR263QJN
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB957XKQ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ATF-7

value: pooled male and female

value: ENCBS166DUQ at ENCODE; https://www.encodeproject.org/ENCBS166DUQ/


title: Control ChIP-seq from whole organism (ENCLB039EDF)

description:
https://www.encodeproject.org/experiments/ENCSR939PJG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y53C12C.1-eGFP fusion proteins.
experiment encode accession: ENCSR939PJG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB039EDF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans eyg-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y53C12C.1

value: hermaphrodite

value: late embryonic

value: unknown

tag: post synchronization time

value: hour

value: ENCBS855KJG at ENCODE; https://www.encodeproject.org/ENCBS855KJG/


title: TF ChIP-seq from whole organism (ENCLB644GQN)

description:
https://www.encodeproject.org/experiments/ENCSR240NHL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ac-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR240NHL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR575NOI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB644GQN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ac

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ac

value: embryonic

value: 0-8 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS183GUG at ENCODE; https://www.encodeproject.org/ENCBS183GUG/


title: TF ChIP-seq from whole organism (ENCLB421EPS)

description:
https://www.encodeproject.org/experiments/ENCSR272KZJ/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LSY-12-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR272KZJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR661GOR
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB421EPS
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-12

value: pooled male and female

value: L3 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

tag: post synchronization time units

value: ENCBS897PYA at ENCODE; https://www.encodeproject.org/ENCBS897PYA/


title: Control ChIP-seq from whole organism (ENCLB754SXD)

description:
https://www.encodeproject.org/experiments/ENCSR171ADY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR171ADY
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB754SXD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8281 embryo (0-20 hours) insertion targeting D. melanogaster CG8281

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8281

value: not collected

value: 0-20 hour

tag: link

value: ENCBS693GRU at ENCODE; https://www.encodeproject.org/ENCBS693GRU/


title: Control ChIP-seq from whole organism (ENCLB703LNQ)

description:
https://www.encodeproject.org/experiments/ENCSR639KBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SOX-4-eGFP fusion proteins.
experiment encode accession: ENCSR639KBJ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB703LNQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP517 (unc-119(tm4063) III; wgIs517) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans sox-4

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SOX-4

value: hermaphrodite

value: L1 larva

value: unknown

value: hour

value: ENCBS498BKJ at ENCODE; https://www.encodeproject.org/ENCBS498BKJ/


title: TF ChIP-seq from whole organism (ENCLB205XUP)

description:
https://www.encodeproject.org/experiments/ENCSR335NNR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR335NNR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR308YQB
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB205XUP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to nerfin-1

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS753SSI at ENCODE; https://www.encodeproject.org/ENCBS753SSI/


title: TF ChIP-seq from whole organism (ENCLB224DKC)

description:
https://www.encodeproject.org/experiments/ENCSR360VOG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing SOMI-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR360VOG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR900PXV
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB224DKC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP752 (unc-119(tm4063); wgIs752 [somi-1::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex young adult (65.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans somi-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SOMI-1.

value: young adult

value: 65.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS122VVD at ENCODE; https://www.encodeproject.org/ENCBS122VVD/


title: TF ChIP-seq from whole organism (ENCLB706INT)

description:
https://www.encodeproject.org/experiments/ENCSR371ICA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing t20f7.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR371ICA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR560IUO
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB706INT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T20F7.1.

value: L4 larva

value: 48 hour

value: ENCBS112UXR at ENCODE; https://www.encodeproject.org/ENCBS112UXR/


title: TF ChIP-seq from whole organism (ENCLB172PGR)

description:
https://www.encodeproject.org/experiments/ENCSR360VOG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing SOMI-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR360VOG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR900PXV
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB172PGR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: pooled male and female

value: ENCBS120CDR at ENCODE; https://www.encodeproject.org/ENCBS120CDR/


title: TF ChIP-seq from whole organism (ENCLB403QNJ)

description:
https://www.encodeproject.org/experiments/ENCSR055BAQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1621-eGFP fusion proteins.
experiment encode accession: ENCSR055BAQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR461LST
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB403QNJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1621 mixed sex prepupa (24 hours) insertion targeting D. melanogaster Coop

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1621

value: prepupa

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS038WFI at ENCODE; https://www.encodeproject.org/ENCBS038WFI/


title: TF ChIP-seq from whole organism (ENCLB122ZBQ)

description:
https://www.encodeproject.org/experiments/ENCSR055BAQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1621-eGFP fusion proteins.
experiment encode accession: ENCSR055BAQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR461LST
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB122ZBQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS601HKS at ENCODE; https://www.encodeproject.org/ENCBS601HKS/


title: TF ChIP-seq from whole organism (ENCLB332DHB)

description:
https://www.encodeproject.org/experiments/ENCSR938NRX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing IRX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR938NRX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR961THO
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB332DHB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP536 (unc-119(tm4063) III; wgIs536) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans irx-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to IRX-1

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS346ZNW at ENCODE; https://www.encodeproject.org/ENCBS346ZNW/


title: TF ChIP-seq from whole organism (ENCLB833KGC)

description:
https://www.encodeproject.org/experiments/ENCSR055BAQ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1621-eGFP fusion proteins.
experiment encode accession: ENCSR055BAQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR461LST
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB833KGC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

value: pooled male and female

value: ENCBS345LOU at ENCODE; https://www.encodeproject.org/ENCBS345LOU/