title: TF ChIP-seq from whole organism (ENCLB917ACO)

description:
https://www.encodeproject.org/experiments/ENCSR749USJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing jing-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR749USJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR702TBJ
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB917ACO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain jing-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster jing

value: jing

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to jing

value: pooled male and female

value: embryonic

value: 0-16 hour

value: ENCBS313MUE at ENCODE; https://www.encodeproject.org/ENCBS313MUE/


title: Control ChIP-seq from whole organism (ENCLB938LNL)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR481GRU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-90-eGFP fusion proteins.
experiment encode accession: ENCSR481GRU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB938LNL
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP484 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-90

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-90

tag: Sex

value: hermaphrodite

tag: dev stage

value: young adult

tag: age

value: unknown

tag: lab

value: Valerie Reinke, Yale

tag: source

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

tag: link

value: ENCBS133IZQ at ENCODE; https://www.encodeproject.org/ENCBS133IZQ/


title: Control ChIP-seq from whole organism (ENCLB322NCI)

description:
https://www.encodeproject.org/experiments/ENCSR749JEF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Rel-eGFP fusion proteins.
experiment encode accession: ENCSR749JEF
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB322NCI
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Rel mixed sex wandering third instar larva insertion targeting D. melanogaster Rel

value: whole organism

value: Transgenic D. mel line, stably expressing a N-terminal GFP fused to Rel

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS585JDE at ENCODE; https://www.encodeproject.org/ENCBS585JDE/


title: Control ChIP-seq from whole organism (ENCLB744IRZ)

description:
https://www.encodeproject.org/experiments/ENCSR272JEI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins.
experiment encode accession: ENCSR272JEI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB744IRZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain psq-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster psq

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS066WGB at ENCODE; https://www.encodeproject.org/ENCBS066WGB/


title: Control ChIP-seq from whole organism (ENCLB319GGE)

description:
https://www.encodeproject.org/experiments/ENCSR977MGF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing DAF-16-eGFP fusion proteins.
experiment encode accession: ENCSR977MGF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB319GGE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain ZM8745 (daf-16(mu86);daf-2(e1370) III; hpSi15 (Pges-1 GFP::daf-16a)) hermaphrodite L4 larva 54 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans daf-16

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: ENCBS975BGF at ENCODE; https://www.encodeproject.org/ENCBS975BGF/


title: TF ChIP-seq from whole organism (ENCLB732PCR)

description:
https://www.encodeproject.org/experiments/ENCSR216ZJL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lsy-2 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR216ZJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR528CPO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB732PCR
size range: 150-350

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex mixed stage (embryo) insertion targeting C. elegans lsy-2

extract_protocol: not provided

tag: antibody

value: whole organism

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS106MDZ at ENCODE; https://www.encodeproject.org/ENCBS106MDZ/


title: TF ChIP-seq from whole organism (ENCLB841VGT)

description:
https://www.encodeproject.org/experiments/ENCSR309CWP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR309CWP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR698DCH
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB841VGT
size range: 150-350

source_name: Caenorhabditis elegans strain OP317 (unc-119(ed3) III; wgIs317) mixed sex mixed stage (embryo) insertion targeting C. elegans nhr-28

value: whole organisms

value: ENCBS603QQZ at ENCODE; https://www.encodeproject.org/ENCBS603QQZ/


title: TF ChIP-seq from whole organism (ENCLB193UYP)

description:
https://www.encodeproject.org/experiments/ENCSR309CWP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-28 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR309CWP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR698DCH
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB193UYP
size range: 150-350

value: pooled male and female

value: ENCBS955SOO at ENCODE; https://www.encodeproject.org/ENCBS955SOO/


title: Control ChIP-seq from whole organism (ENCLB932PWD)

description:
https://www.encodeproject.org/experiments/ENCSR628ZUK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG16815-eGFP fusion proteins.
experiment encode accession: ENCSR628ZUK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB932PWD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG16815-GFP mixed sex embryo (0-10 hours) insertion targeting D. melanogaster CG16815

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG16815

value: embryonic

value: 0-10 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS214NFJ at ENCODE; https://www.encodeproject.org/ENCBS214NFJ/


title: TF ChIP-seq from whole organism (ENCLB908IEZ)

description:
https://www.encodeproject.org/experiments/ENCSR633IKC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ssrp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR633IKC
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR524HLR
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB908IEZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Ssrp

value: Ssrp

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ssrp

value: 0-16 hour

value: ENCBS240WUM at ENCODE; https://www.encodeproject.org/ENCBS240WUM/


title: Control ChIP-seq from whole organism (ENCLB583IXW)

description:
https://www.encodeproject.org/experiments/ENCSR217FIF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 worms.
experiment encode accession: ENCSR217FIF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB583IXW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP236 (unc-119(ed3) III; wgIs236) mixed sex L1 larva insertion targeting C. elegans ztf-11

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS076KIF at ENCODE; https://www.encodeproject.org/ENCBS076KIF/


title: TF ChIP-seq from whole organism (ENCLB872YUF)

description:
https://www.encodeproject.org/experiments/ENCSR373BIM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing shn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR373BIM
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR480EZU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB872YUF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster shn

value: shn

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to shn

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS321YDK at ENCODE; https://www.encodeproject.org/ENCBS321YDK/


title: TF ChIP-seq from whole organism (ENCLB287BQS)

description:
https://www.encodeproject.org/experiments/ENCSR749USJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing jing-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR749USJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR702TBJ
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB287BQS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: jing

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to jing

value: Kevin White, UChicago

value: Kevin White

value: ENCBS422YTS at ENCODE; https://www.encodeproject.org/ENCBS422YTS/


title: Control ChIP-seq from whole organism (ENCLB921JTN)

description:
https://www.encodeproject.org/experiments/ENCSR264VTB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dm-eGFP fusion proteins.
experiment encode accession: ENCSR264VTB
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB921JTN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dm-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Myc

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dm

value: 0-16 hour

value: ENCBS836AGJ at ENCODE; https://www.encodeproject.org/ENCBS836AGJ/


title: TF ChIP-seq from whole organism (ENCLB877KVW)

description:
https://www.encodeproject.org/experiments/ENCSR665UXV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MES-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR665UXV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626XZR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB877KVW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain RW10325 hermaphrodite young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans mes-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MES-4

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS711XSV at ENCODE; https://www.encodeproject.org/ENCBS711XSV/


title: Control ChIP-seq from whole organism (ENCLB897FZE)

description:
https://www.encodeproject.org/experiments/ENCSR929IRK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing cwo-eGFP fusion proteins.
experiment encode accession: ENCSR929IRK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB897FZE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cwo-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster cwo

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cwo

value: pooled male and female

value: embryonic

value: ENCBS045VLN at ENCODE; https://www.encodeproject.org/ENCBS045VLN/


title: Control ChIP-seq from whole organism (ENCLB799GYL)

description:
https://www.encodeproject.org/experiments/ENCSR627RCN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG2712-eGFP fusion proteins.
experiment encode accession: ENCSR627RCN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB799GYL
size range: 200-800

source_name: Drosophila melanogaster strain CG2712 mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG2712

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2712

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS340NBD at ENCODE; https://www.encodeproject.org/ENCBS340NBD/


title: TF ChIP-seq from whole organism (ENCLB581GRG)

description:
https://www.encodeproject.org/experiments/ENCSR271VMW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR271VMW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR081PIH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB581GRG
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Hr38-GFP mixed sex prepupa (48 hours) at white prepupa stage insertion targeting D. melanogaster Hr38

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr38

value: prepupa

value: 48 hour

tag: fly synchronization stage

value: white prepupa

value: ENCBS643FLQ at ENCODE; https://www.encodeproject.org/ENCBS643FLQ/


title: Control ChIP-seq from whole organism (ENCLB530EQX)

description:
https://www.encodeproject.org/experiments/ENCSR629JCM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG30431-eGFP fusion proteins.
experiment encode accession: ENCSR629JCM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB530EQX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG30431-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG30431

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG30431

value: 0-24 hour

value: ENCBS151RDN at ENCODE; https://www.encodeproject.org/ENCBS151RDN/


title: Control ChIP-seq from whole organism (ENCLB766JMC)

description:
https://www.encodeproject.org/experiments/ENCSR799DSA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing rnt-1-eGFP fusion proteins.
experiment encode accession: ENCSR799DSA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB766JMC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP462 (unc-119(tm4063) III; wgIs462) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rnt-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to rnt-1

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS993QEE at ENCODE; https://www.encodeproject.org/ENCBS993QEE/


title: Control ChIP-seq from whole organism (ENCLB276JIH)

description:
https://www.encodeproject.org/experiments/ENCSR135POC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR135POC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB276JIH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP395 (unc-119(tm4063) III; wgIs395) mixed sex L1 larva insertion targeting C. elegans unc-30

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-30

value: pooled male and female

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS269HIO at ENCODE; https://www.encodeproject.org/ENCBS269HIO/


title: Control ChIP-seq from whole organism (ENCLB958GRB)

description:
https://www.encodeproject.org/experiments/ENCSR471NZA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing AHR-1-eGFP fusion proteins.
experiment encode accession: ENCSR471NZA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB958GRB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP562 (unc-119(tm4063) III; wgIs562) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans ahr-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AHR-1

value: late embryonic

value: egg bleaching

value: ENCBS258YBO at ENCODE; https://www.encodeproject.org/ENCBS258YBO/


title: Control ChIP-seq from whole organism (ENCLB758GYL)

description:
https://www.encodeproject.org/experiments/ENCSR217FIF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 worms.
experiment encode accession: ENCSR217FIF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB758GYL
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-11

value: L1 larva

value: unknown

value: ENCBS392YCA at ENCODE; https://www.encodeproject.org/ENCBS392YCA/


title: TF ChIP-seq from whole organism (ENCLB015RGF)

description:
https://www.encodeproject.org/experiments/ENCSR363SHZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Met-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR363SHZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343RCH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB015RGF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Met-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Met

value: Met

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Met

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS094FZY at ENCODE; https://www.encodeproject.org/ENCBS094FZY/


title: Control ChIP-seq from whole organism (ENCLB088EXX)

description:
https://www.encodeproject.org/experiments/ENCSR036AJI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR036AJI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB088EXX
size range: 150-350

source_name: Caenorhabditis elegans strain OP77 (unc-119(ed3) III; wgIs77) mixed sex L1 larva insertion targeting C. elegans unc-130

value: whole organism

value: whole organisms

value: pooled male and female

value: Michael Snyder, Stanford

value: CGC

value: ENCBS590PQG at ENCODE; https://www.encodeproject.org/ENCBS590PQG/


title: TF ChIP-seq from whole organism (ENCLB704HZX)

description:
https://www.encodeproject.org/experiments/ENCSR456GSL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456GSL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR628JNH
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB704HZX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP659 (unc-119(tm4063) III; wgIs659) mixed sex mixed stage (embryo) 3 hours post synchronization using egg bleaching insertion targeting C. elegans unc-120

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-120

value: mixed stage (embryonic)

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS469SCG at ENCODE; https://www.encodeproject.org/ENCBS469SCG/


title: TF ChIP-seq from whole organism (ENCLB156YIO)

description:
https://www.encodeproject.org/experiments/ENCSR924PXF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR924PXF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR282UQU
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB156YIO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7271 embryo (0-4 hours) insertion targeting D. melanogaster CG7271

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7271

value: not collected

value: embryonic

value: 0-4 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS005AFT at ENCODE; https://www.encodeproject.org/ENCBS005AFT/


title: Control ChIP-seq from whole organism (ENCLB714SYI)

description:
https://www.encodeproject.org/experiments/ENCSR135POC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR135POC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB714SYI
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-30

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS902XYX at ENCODE; https://www.encodeproject.org/ENCBS902XYX/


title: Control ChIP-seq from whole organism (ENCLB001KDZ)

description:
https://www.encodeproject.org/experiments/ENCSR036AJI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR036AJI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB001KDZ
size range: 150-350

value: not applicable

value: CGC

value: ENCBS467HOY at ENCODE; https://www.encodeproject.org/ENCBS467HOY/


title: Control ChIP-seq from whole organism (ENCLB006XAV)

description:
https://www.encodeproject.org/experiments/ENCSR966WUX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-20-eGFP fusion proteins.
experiment encode accession: ENCSR966WUX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB006XAV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP515 (unc-119(tm4063) III; wgIs515) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-20

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-20

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS383WEU at ENCODE; https://www.encodeproject.org/ENCBS383WEU/


title: TF ChIP-seq from whole organism (ENCLB343WVU)

description:
https://www.encodeproject.org/experiments/ENCSR665UXV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MES-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR665UXV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626XZR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB343WVU
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MES-4

value: young adult

value: ENCBS580CDR at ENCODE; https://www.encodeproject.org/ENCBS580CDR/


title: TF ChIP-seq from whole organism (ENCLB428AOJ)

description:
https://www.encodeproject.org/experiments/ENCSR456GSL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR456GSL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR628JNH
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB428AOJ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-120

value: pooled male and female

value: mixed stage (embryonic)

value: unknown

value: egg bleaching

value: ENCBS191BCY at ENCODE; https://www.encodeproject.org/ENCBS191BCY/


title: Control ChIP-seq from whole organism (ENCLB119OJR)

description:
https://www.encodeproject.org/experiments/ENCSR134PTC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against CEG-9 in L3 worms.
experiment encode accession: ENCSR134PTC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB119OJR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP202 (unc-119(ed3) III; wgIs202) mixed sex L3 larva insertion targeting C. elegans ceh-9

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-9

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS542MOQ at ENCODE; https://www.encodeproject.org/ENCBS542MOQ/


title: Control ChIP-seq from whole organism (ENCLB864DDE)

description:
https://www.encodeproject.org/experiments/ENCSR134PTC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against CEG-9 in L3 worms.
experiment encode accession: ENCSR134PTC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB864DDE
fragmentation methods: sonication (generic microtip)

value: whole organism

value: ENCBS741EEW at ENCODE; https://www.encodeproject.org/ENCBS741EEW/


title: TF ChIP-seq from whole organism (ENCLB661UZP)

description:
https://www.encodeproject.org/experiments/ENCSR962KSG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DIE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR962KSG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR577GDS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB661UZP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain RW10316 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans die-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DIE-1

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS608SSW at ENCODE; https://www.encodeproject.org/ENCBS608SSW/


title: TF ChIP-seq from whole organism (ENCLB363GIU)

description:
https://www.encodeproject.org/experiments/ENCSR924PXF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR924PXF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR282UQU
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB363GIU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7271

value: not collected

value: embryonic

value: 0-4 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS679MMJ at ENCODE; https://www.encodeproject.org/ENCBS679MMJ/


title: TF ChIP-seq from whole organism (ENCLB349PIU)

description:
https://www.encodeproject.org/experiments/ENCSR363SHZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Met-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR363SHZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343RCH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB349PIU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Met

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Met

value: pooled male and female

value: prepupa

value: unknown

value: white prepupa

value: ENCBS137WEC at ENCODE; https://www.encodeproject.org/ENCBS137WEC/


title: TF ChIP-seq from whole organism (ENCLB397NOJ)

description:
https://www.encodeproject.org/experiments/ENCSR360TFL/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG31388-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR360TFL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR023XBU
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB397NOJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG31388-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG31388

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG31388

value: 0-16 hour

value: ENCBS275UMT at ENCODE; https://www.encodeproject.org/ENCBS275UMT/


title: TF ChIP-seq from whole organism (ENCLB480LRW)

description:
https://www.encodeproject.org/experiments/ENCSR923VWW/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sqz-eGFP fusion proteins.
experiment encode accession: ENCSR923VWW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR082YVU
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB480LRW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sqz-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster sqz

value: sqz

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sqz

value: embryonic

value: ENCBS884XSR at ENCODE; https://www.encodeproject.org/ENCBS884XSR/


title: TF ChIP-seq from whole organism (ENCLB095WIQ)

description:
https://www.encodeproject.org/experiments/ENCSR957OLT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MEC-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR957OLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR200IVZ
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB095WIQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP55 (unc-119(ed3) III; wgIs55) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans mec-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MEC-3

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS442IMT at ENCODE; https://www.encodeproject.org/ENCBS442IMT/


title: TF ChIP-seq from whole organism (ENCLB594HOL)

description:
https://www.encodeproject.org/experiments/ENCSR271VMW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR271VMW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR081PIH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB594HOL
fragmentation methods: sonication (Bioruptor generic)

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr38

value: pooled male and female

value: prepupa

value: 48 hour

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS919VQN at ENCODE; https://www.encodeproject.org/ENCBS919VQN/


title: TF ChIP-seq from whole organism (ENCLB724EON)

description:
https://www.encodeproject.org/experiments/ENCSR363SHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Met-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR363SHZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR343RCH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB724EON
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Met

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Met

value: unknown

value: ENCBS093CKD at ENCODE; https://www.encodeproject.org/ENCBS093CKD/


title: Control ChIP-seq from whole organism (ENCLB213LIJ)

description:
https://www.encodeproject.org/experiments/ENCSR782XFF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-43-eGFP fusion proteins.
experiment encode accession: ENCSR782XFF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB213LIJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP477 (unc-119(tm4063) III; wgIs477) hermaphrodite L3 larva 36.5 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-43

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-43

value: hermaphrodite

value: L3 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS573TMK at ENCODE; https://www.encodeproject.org/ENCBS573TMK/


title: TF ChIP-seq from whole organism (ENCLB011IWW)

description:
https://www.encodeproject.org/experiments/ENCSR962KSG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DIE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR962KSG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR577GDS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB011IWW
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DIE-1

value: young adult

value: ENCBS622POL at ENCODE; https://www.encodeproject.org/ENCBS622POL/


title: Control ChIP-seq from whole organism (ENCLB082GQI)

description:
https://www.encodeproject.org/experiments/ENCSR034DCF/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR034DCF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB082GQI
size range: 150-350

source_name: Caenorhabditis elegans strain OP353 (unc-119(tm4063) III; wgIs353) mixed sex L4 larva insertion targeting C. elegans nhr-77

value: whole organisms

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS791ZZG at ENCODE; https://www.encodeproject.org/ENCBS791ZZG/


title: TF ChIP-seq from whole organism (ENCLB687UHE)

description:
https://www.encodeproject.org/experiments/ENCSR923VWW/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sqz-eGFP fusion proteins.
experiment encode accession: ENCSR923VWW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR082YVU
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB687UHE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: sqz

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sqz

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS213VDW at ENCODE; https://www.encodeproject.org/ENCBS213VDW/


title: Control ChIP-seq from whole organism (ENCLB075FBA)

description:
https://www.encodeproject.org/experiments/ENCSR421OFW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR421OFW
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB075FBA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain run embryo (0-16 hours) insertion targeting D. melanogaster run

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to run

value: not collected

value: ENCBS468JPM at ENCODE; https://www.encodeproject.org/ENCBS468JPM/


title: Control ChIP-seq from whole organism (ENCLB582HKB)

description:
https://www.encodeproject.org/experiments/ENCSR034DCF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR034DCF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB582HKB
size range: 150-350

value: whole organisms

value: pooled male and female

value: unknown

value: ENCBS434WCK at ENCODE; https://www.encodeproject.org/ENCBS434WCK/


title: Control ChIP-seq from whole organism (ENCLB074SLL)

description:
https://www.encodeproject.org/experiments/ENCSR260YDC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Su(var)3-7-eGFP fusion proteins.
experiment encode accession: ENCSR260YDC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB074SLL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Su(var)3-7-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Su(var)3-7

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Su(var)3-7

value: 0-24 hour

value: ENCBS130QSH at ENCODE; https://www.encodeproject.org/ENCBS130QSH/


title: TF ChIP-seq from whole organism (ENCLB307IHJ)

description:
https://www.encodeproject.org/experiments/ENCSR359ZMS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fu2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR359ZMS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR835UJD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB307IHJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fu2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster prg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fu2

value: embryonic

value: ENCBS927FYV at ENCODE; https://www.encodeproject.org/ENCBS927FYV/


title: TF ChIP-seq from whole organism (ENCLB139HXX)

description:
https://www.encodeproject.org/experiments/ENCSR421ILX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10274-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR421ILX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR163EWH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB139HXX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10274-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10274

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10274

value: Kevin White, UChicago

value: Kevin White

value: ENCBS274UUS at ENCODE; https://www.encodeproject.org/ENCBS274UUS/


title: Control ChIP-seq from whole organism (ENCLB818EYN)

description:
https://www.encodeproject.org/experiments/ENCSR134PTC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against CEG-9 in L3 worms.
experiment encode accession: ENCSR134PTC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB818EYN
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-9

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS166OMM at ENCODE; https://www.encodeproject.org/ENCBS166OMM/


title: TF ChIP-seq from whole organism (ENCLB263RMI)

description:
https://www.encodeproject.org/experiments/ENCSR421ILX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10274-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR421ILX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR163EWH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB263RMI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: pooled male and female

value: ENCBS333XDE at ENCODE; https://www.encodeproject.org/ENCBS333XDE/


title: TF ChIP-seq from whole organism (ENCLB467XLE)

description:
https://www.encodeproject.org/experiments/ENCSR778ETM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PQM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR778ETM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR695HJO
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB467XLE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) hermaphrodite late embryo 2 hours post synchronization using egg bleaching insertion targeting C. elegans pqm-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS968CBJ at ENCODE; https://www.encodeproject.org/ENCBS968CBJ/


title: TF ChIP-seq from whole organism (ENCLB835TKR)

description:
https://www.encodeproject.org/experiments/ENCSR957OLT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MEC-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR957OLT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR200IVZ
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB835TKR
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MEC-3

value: ENCBS681JZW at ENCODE; https://www.encodeproject.org/ENCBS681JZW/


title: TF ChIP-seq from whole organism (ENCLB851HPN)

description:
https://www.encodeproject.org/experiments/ENCSR354KRW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG14965-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR354KRW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR311GKZ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB851HPN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14965-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG14965

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14965

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS273IIM at ENCODE; https://www.encodeproject.org/ENCBS273IIM/


title: Control ChIP-seq from whole organism (ENCLB529WKN)

description:
https://www.encodeproject.org/experiments/ENCSR134PTC/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against CEG-9 in L3 worms.
experiment encode accession: ENCSR134PTC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB529WKN
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-9

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS456RFH at ENCODE; https://www.encodeproject.org/ENCBS456RFH/


title: Control ChIP-seq from whole organism (ENCLB479KYN)

description:
https://www.encodeproject.org/experiments/ENCSR134PTC/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq against CEG-9 in L3 worms.
experiment encode accession: ENCSR134PTC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB479KYN
fragmentation methods: sonication (generic microtip)

value: whole organism

value: unknown

value: ENCBS779DQB at ENCODE; https://www.encodeproject.org/ENCBS779DQB/


title: TF ChIP-seq from whole organism (ENCLB859RGV)

description:
https://www.encodeproject.org/experiments/ENCSR923VWW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sqz-eGFP fusion proteins.
experiment encode accession: ENCSR923VWW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR082YVU
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB859RGV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: sqz

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sqz

value: 0-16 hour

value: ENCBS403RQG at ENCODE; https://www.encodeproject.org/ENCBS403RQG/


title: TF ChIP-seq from whole organism (ENCLB932WJL)

description:
https://www.encodeproject.org/experiments/ENCSR259WOE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing zfh2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR259WOE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR994QGM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB932WJL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain zfh2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster zfh2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zfh2

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS219UFT at ENCODE; https://www.encodeproject.org/ENCBS219UFT/


title: Control ChIP-seq from whole organism (ENCLB102OZY)

description:
https://www.encodeproject.org/experiments/ENCSR032JLQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR032JLQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB102OZY
size range: 150-350

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L1 larva insertion targeting C. elegans ceh-82

value: whole organisms

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS682CAM at ENCODE; https://www.encodeproject.org/ENCBS682CAM/


title: TF ChIP-seq from whole organism (ENCLB361EDU)

description:
https://www.encodeproject.org/experiments/ENCSR259WOE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing zfh2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR259WOE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR994QGM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB361EDU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS065YAW at ENCODE; https://www.encodeproject.org/ENCBS065YAW/


title: Control ChIP-seq from whole organism (ENCLB345FXQ)

description:
https://www.encodeproject.org/experiments/ENCSR779STX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SNU-23-eGFP fusion proteins.
experiment encode accession: ENCSR779STX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB345FXQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP528 (wgIs528(snu-23::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0094_4B11);unc-119(+));unc-119 (tm4063)) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. ele...

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNU-23

value: hermaphrodite

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS951ZSG at ENCODE; https://www.encodeproject.org/ENCBS951ZSG/


title: TF ChIP-seq from whole organism (ENCLB325GOS)

description:
https://www.encodeproject.org/experiments/ENCSR778ETM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing PQM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR778ETM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR695HJO
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB325GOS
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PQM-1

value: late embryonic

value: egg bleaching

value: ENCBS408MEU at ENCODE; https://www.encodeproject.org/ENCBS408MEU/


title: TF ChIP-seq from whole organism (ENCLB880LGS)

description:
https://www.encodeproject.org/experiments/ENCSR923RDP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12768-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR923RDP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR976PNA
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB880LGS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12768-GFP male adult insertion targeting D. melanogaster CG12768

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12768

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS676NUE at ENCODE; https://www.encodeproject.org/ENCBS676NUE/


title: Control ChIP-seq from whole organism (ENCLB305AEI)

description:
https://www.encodeproject.org/experiments/ENCSR032JLQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR032JLQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB305AEI
size range: 150-350

value: whole organism

value: not applicable

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS658OLX at ENCODE; https://www.encodeproject.org/ENCBS658OLX/


title: TF ChIP-seq from whole organism (ENCLB224MXN)

description:
https://www.encodeproject.org/experiments/ENCSR206TOT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against EGL-27 in L4 worms.
experiment encode accession: ENCSR206TOT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR756JUX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB224MXN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L4 larva insertion targeting C. elegans egl-27

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L4 larva

value: Michael Snyder

value: ENCBS595GXA at ENCODE; https://www.encodeproject.org/ENCBS595GXA/


title: TF ChIP-seq from whole organism (ENCLB198JHG)

description:
https://www.encodeproject.org/experiments/ENCSR359ZMS/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fu2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR359ZMS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR835UJD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB198JHG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fu2

value: embryonic

value: 0-24 hour

value: ENCBS966JRB at ENCODE; https://www.encodeproject.org/ENCBS966JRB/


title: TF ChIP-seq from whole organism (ENCLB571SIY)

description:
https://www.encodeproject.org/experiments/ENCSR421ILX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10274-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR421ILX
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR163EWH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB571SIY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10274

value: Kevin White, UChicago

value: Kevin White

value: ENCBS528XMB at ENCODE; https://www.encodeproject.org/ENCBS528XMB/


title: Control ChIP-seq from whole organism (ENCLB671RJV)

description:
https://www.encodeproject.org/experiments/ENCSR775TWW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-34-eGFP fusion proteins.
experiment encode accession: ENCSR775TWW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB671RJV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP524 (unc-119(tm4063) III; wgIs524) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-34

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-34

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS838WME at ENCODE; https://www.encodeproject.org/ENCBS838WME/


title: TF ChIP-seq from whole organism (ENCLB659MIN)

description:
https://www.encodeproject.org/experiments/ENCSR097DMR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Chrac-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR097DMR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR655QMD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB659MIN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Chrac-16-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Chrac-16

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Chrac-16

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS597LDH at ENCODE; https://www.encodeproject.org/ENCBS597LDH/


title: TF ChIP-seq from whole organism (ENCLB102GJS)

description:
https://www.encodeproject.org/experiments/ENCSR923RDP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12768-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR923RDP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR976PNA
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB102GJS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12768

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS613MAP at ENCODE; https://www.encodeproject.org/ENCBS613MAP/


title: TF ChIP-seq from whole organism (ENCLB126TEQ)

description:
https://www.encodeproject.org/experiments/ENCSR946AUI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DAF-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946AUI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR977MGF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB126TEQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain ZM8745 (daf-16(mu86);daf-2(e1370) III; hpSi15 (Pges-1 GFP::daf-16a)) hermaphrodite L4 larva 54 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans daf-16

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS157PIG at ENCODE; https://www.encodeproject.org/ENCBS157PIG/


title: TF ChIP-seq from whole organism (ENCLB886ECS)

description:
https://www.encodeproject.org/experiments/ENCSR447EUI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SYD-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR447EUI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR310FMI
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB886ECS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP488 (unc-119(tm4063) III; wgIs488) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans syd-9

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SYD-9

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS733LGV at ENCODE; https://www.encodeproject.org/ENCBS733LGV/


title: Control ChIP-seq from whole organism (ENCLB437OOV)

description:
https://www.encodeproject.org/experiments/ENCSR255TJG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dsf-eGFP fusion proteins.
experiment encode accession: ENCSR255TJG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB437OOV
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain dsf-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dsf

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dsf

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS894YOT at ENCODE; https://www.encodeproject.org/ENCBS894YOT/


title: Control ChIP-seq from whole organism (ENCLB015BXC)

description:
https://www.encodeproject.org/experiments/ENCSR348OGP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ovo-eGFP fusion proteins.
experiment encode accession: ENCSR348OGP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB015BXC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ovo-GFP female adult insertion targeting D. melanogaster ovo

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ovo

value: female

value: adult

value: unknown

value: ENCBS439ZBS at ENCODE; https://www.encodeproject.org/ENCBS439ZBS/


title: TF ChIP-seq from whole organism (ENCLB265UAO)

description:
https://www.encodeproject.org/experiments/ENCSR206TOT/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against EGL-27 in L4 worms.
experiment encode accession: ENCSR206TOT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR756JUX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB265UAO
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS380RMS at ENCODE; https://www.encodeproject.org/ENCBS380RMS/


title: TF ChIP-seq from whole organism (ENCLB069YUD)

description:
https://www.encodeproject.org/experiments/ENCSR447EUI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SYD-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR447EUI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR310FMI
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB069YUD
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SYD-9

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS738FWP at ENCODE; https://www.encodeproject.org/ENCBS738FWP/


title: TF ChIP-seq from whole organism (ENCLB348XNG)

description:
https://www.encodeproject.org/experiments/ENCSR097DMR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Chrac-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR097DMR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR655QMD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB348XNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Chrac-16

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS083YMK at ENCODE; https://www.encodeproject.org/ENCBS083YMK/


title: Control ChIP-seq from whole organism (ENCLB567HIE)

description:
https://www.encodeproject.org/experiments/ENCSR741UCB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR741UCB
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB567HIE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster cg

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cg

value: ENCBS028DLD at ENCODE; https://www.encodeproject.org/ENCBS028DLD/


title: TF ChIP-seq from whole organism (ENCLB514AGR)

description:
https://www.encodeproject.org/experiments/ENCSR624PKN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9727-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR624PKN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR236JJO
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB514AGR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9727-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9727

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9727

value: ENCBS192QZS at ENCODE; https://www.encodeproject.org/ENCBS192QZS/


title: TF ChIP-seq from whole organism (ENCLB338QZW)

description:
https://www.encodeproject.org/experiments/ENCSR946AUI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DAF-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR946AUI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR977MGF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB338QZW
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DAF-16

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS549YHL at ENCODE; https://www.encodeproject.org/ENCBS549YHL/


title: TF ChIP-seq from whole organism (ENCLB276WOJ)

description:
https://www.encodeproject.org/experiments/ENCSR097DMR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Chrac-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR097DMR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR655QMD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB276WOJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Chrac-16

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS654IZH at ENCODE; https://www.encodeproject.org/ENCBS654IZH/


title: Control ChIP-seq from whole organism (ENCLB184GCF)

description:
https://www.encodeproject.org/experiments/ENCSR132PKK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR132PKK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB184GCF
size range: 150-350

source_name: Caenorhabditis elegans strain OP177 (unc-119(ed3) III; wgIs177) mixed sex L1 larva insertion targeting C. elegans egl-27

value: whole organism

value: whole organisms

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS140JFC at ENCODE; https://www.encodeproject.org/ENCBS140JFC/


title: Control ChIP-seq from whole organism (ENCLB346TRU)

description:
https://www.encodeproject.org/experiments/ENCSR920WVV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR920WVV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB346TRU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG34367 pupa (24 hours) insertion targeting D. melanogaster CG34367

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG34367

value: not collected

value: pupa

value: 24 hour

value: Kevin White

value: ENCBS049MWU at ENCODE; https://www.encodeproject.org/ENCBS049MWU/


title: TF ChIP-seq from whole organism (ENCLB521ODX)

description:
https://www.encodeproject.org/experiments/ENCSR206TOT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against EGL-27 in L4 worms.
experiment encode accession: ENCSR206TOT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR756JUX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB521ODX
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder

value: ENCBS582BKA at ENCODE; https://www.encodeproject.org/ENCBS582BKA/


title: TF ChIP-seq from whole organism (ENCLB697MWS)

description:
https://www.encodeproject.org/experiments/ENCSR624PKN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9727-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR624PKN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR236JJO
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB697MWS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9727

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS769CRO at ENCODE; https://www.encodeproject.org/ENCBS769CRO/


title: TF ChIP-seq from whole organism (ENCLB246CWG)

description:
https://www.encodeproject.org/experiments/ENCSR032CWX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C06A8.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032CWX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041LTG
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB246CWG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL482 hermaphrodite young adult insertion targeting C. elegans snpc-1.1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C06A8.2

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS059SJC at ENCODE; https://www.encodeproject.org/ENCBS059SJC/


title: TF ChIP-seq from whole organism (ENCLB156XUZ)

description:
https://www.encodeproject.org/experiments/ENCSR647GMY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR647GMY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR109XBO
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB156XUZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP558 (unc-119(tm4063) III; wgIs558) mixed sex late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ztf-16

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-16

value: pooled male and female

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS309NIN at ENCODE; https://www.encodeproject.org/ENCBS309NIN/


title: Control ChIP-seq from whole organism (ENCLB962DJO)

description:
https://www.encodeproject.org/experiments/ENCSR343CPV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hr3-eGFP fusion proteins.
experiment encode accession: ENCSR343CPV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB962DJO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hr3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hr3

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr3

value: embryonic

value: Kevin White

value: ENCBS695QCZ at ENCODE; https://www.encodeproject.org/ENCBS695QCZ/


title: TF ChIP-seq from whole organism (ENCLB535EOK)

description:
https://www.encodeproject.org/experiments/ENCSR304WWX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L2 larva worms.
experiment encode accession: ENCSR304WWX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR370QTM
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB535EOK
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS765IZB at ENCODE; https://www.encodeproject.org/ENCBS765IZB/


title: TF ChIP-seq from whole organism (ENCLB279FLB)

description:
https://www.encodeproject.org/experiments/ENCSR624PKN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9727-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR624PKN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR236JJO
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB279FLB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9727

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS104NIM at ENCODE; https://www.encodeproject.org/ENCBS104NIM/


title: TF ChIP-seq from whole organism (ENCLB335ZFJ)

description:
https://www.encodeproject.org/experiments/ENCSR032CWX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C06A8.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032CWX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041LTG
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB335ZFJ
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C06A8.2

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS690EEM at ENCODE; https://www.encodeproject.org/ENCBS690EEM/


title: Control ChIP-seq from whole organism (ENCLB931QVN)

description:
https://www.encodeproject.org/experiments/ENCSR346LCD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG5245-eGFP fusion proteins.
experiment encode accession: ENCSR346LCD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB931QVN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG5245-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG5245

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG5245

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White

value: ENCBS297PIQ at ENCODE; https://www.encodeproject.org/ENCBS297PIQ/


title: Control ChIP-seq from whole organism (ENCLB176ATM)

description:
https://www.encodeproject.org/experiments/ENCSR132PKK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR132PKK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB176ATM
size range: 150-350

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS868JZF at ENCODE; https://www.encodeproject.org/ENCBS868JZF/


title: TF ChIP-seq from whole organism (ENCLB492PFI)

description:
https://www.encodeproject.org/experiments/ENCSR205ZNH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-lin-15B in L4 larva worms.
experiment encode accession: ENCSR205ZNH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966NHU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB492PFI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP184 (unc-119(tm4063) III; wgIs184) mixed sex L4 larva insertion targeting C. elegans lin-15B

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-15B

value: L4 larva

value: Michael Snyder

value: ENCBS256ADW at ENCODE; https://www.encodeproject.org/ENCBS256ADW/


title: TF ChIP-seq from whole organism (ENCLB074CMY)

description:
https://www.encodeproject.org/experiments/ENCSR442XYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MADF-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR442XYW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR433UJZ
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB074CMY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP587 (unc-119(tm4063) III; wgIs587) mixed sex late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans madf-2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MADF-2

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS233BWE at ENCODE; https://www.encodeproject.org/ENCBS233BWE/


title: TF ChIP-seq from whole organism (ENCLB114ZVS)

description:
https://www.encodeproject.org/experiments/ENCSR615RMC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing D19B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR615RMC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR499HRQ
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB114ZVS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain D19B-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster D19B

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D19B

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS544JVG at ENCODE; https://www.encodeproject.org/ENCBS544JVG/


title: TF ChIP-seq from whole organism (ENCLB371INC)

description:
https://www.encodeproject.org/experiments/ENCSR339ZDU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dpn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR339ZDU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR171XET
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB371INC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dpn-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster dpn

value: dpn

value: whole organism

value: D. mel line contraining an intronic eGFP exon to create a dpn-GFP fusion gene

value: Hugo Bellen

value: ENCBS079SDQ at ENCODE; https://www.encodeproject.org/ENCBS079SDQ/


title: Control ChIP-seq from whole organism (ENCLB844HTA)

description:
https://www.encodeproject.org/experiments/ENCSR437EAS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ELT-4-eGFP fusion proteins.
experiment encode accession: ENCSR437EAS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB844HTA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP111 (unc-119(ed3) III; wgIs111) hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans elt-4

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-4

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS097REG at ENCODE; https://www.encodeproject.org/ENCBS097REG/


title: Control ChIP-seq from whole organism (ENCLB619IRR)

description:
https://www.encodeproject.org/experiments/ENCSR345LWU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Dad-eGFP fusion proteins.
experiment encode accession: ENCSR345LWU
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB619IRR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dad-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dad

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dad

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS804JEC at ENCODE; https://www.encodeproject.org/ENCBS804JEC/


title: TF ChIP-seq from whole organism (ENCLB070VSZ)

description:
https://www.encodeproject.org/experiments/ENCSR647GMY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR647GMY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR109XBO
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB070VSZ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-16

value: egg bleaching

value: hour

value: ENCBS518GRL at ENCODE; https://www.encodeproject.org/ENCBS518GRL/


title: Control ChIP-seq from whole organism (ENCLB626BXH)

description:
https://www.encodeproject.org/experiments/ENCSR433UJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MADF-2-eGFP fusion proteins.
experiment encode accession: ENCSR433UJZ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB626BXH
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MADF-2

value: ENCBS648COP at ENCODE; https://www.encodeproject.org/ENCBS648COP/


title: Control ChIP-seq from whole organism (ENCLB709BNV)

description:
https://www.encodeproject.org/experiments/ENCSR343RCH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Met-eGFP fusion proteins.
experiment encode accession: ENCSR343RCH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB709BNV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Met-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Met

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Met

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS117MES at ENCODE; https://www.encodeproject.org/ENCBS117MES/


title: TF ChIP-seq from whole organism (ENCLB700KKM)

description:
https://www.encodeproject.org/experiments/ENCSR205ZNH/
***************
biological replicate number: 3
technical replicate number: 2
description: ChIP-seq against eGFP-lin-15B in L4 larva worms.
experiment encode accession: ENCSR205ZNH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR966NHU
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB700KKM
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-15B

value: pooled male and female

value: L4 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS256ADW at ENCODE; https://www.encodeproject.org/ENCBS256ADW/


title: Control ChIP-seq from whole organism (ENCLB747NGB)

description:
https://www.encodeproject.org/experiments/ENCSR132PKK/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR132PKK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB747NGB
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EGL-27

value: L1 larva

value: ENCBS695DQX at ENCODE; https://www.encodeproject.org/ENCBS695DQX/


title: Control ChIP-seq from whole organism (ENCLB334ZHJ)

description:
https://www.encodeproject.org/experiments/ENCSR647AIG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZK185.1-eGFP fusion proteins.
experiment encode accession: ENCSR647AIG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB334ZHJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP474 (unc-119(tm4063) III; wgIs474) hermaphrodite young adult 56.25 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ZK185.1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK185.1

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS442JQK at ENCODE; https://www.encodeproject.org/ENCBS442JQK/


title: Control ChIP-seq from whole organism (ENCLB502UHE)

description:
https://www.encodeproject.org/experiments/ENCSR920WNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins.
experiment encode accession: ENCSR920WNJ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB502UHE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain insv-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster insv

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS018GVO at ENCODE; https://www.encodeproject.org/ENCBS018GVO/


title: Control ChIP-seq from whole organism (ENCLB983MGH)

description:
https://www.encodeproject.org/experiments/ENCSR942UFE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-71-eGFP fusion proteins.
experiment encode accession: ENCSR942UFE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB983MGH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP480 (unc-119(tm4063) III; wgIs480) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-71

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-71

value: L1 larva

value: ENCBS933SFP at ENCODE; https://www.encodeproject.org/ENCBS933SFP/