title: TF ChIP-seq from whole organism (ENCLB979DBM)

description:
https://www.encodeproject.org/experiments/ENCSR579XVH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-83-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR579XVH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR215YKL
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB979DBM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP727 (unc-119(tm4063); wgIs727 [ceh-83::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (1 hour) using egg bleaching insertion targeting C. elegans ceh-83

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-83.

tag: dev stage

value: mixed stage (embryonic)

value: 1 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS470HOA at ENCODE; https://www.encodeproject.org/ENCBS470HOA/


title: TF ChIP-seq from whole organism (ENCLB991ZBY)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR875XJL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ATHP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR875XJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR862BLF
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB991ZBY
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP685 (unc-119(tm4063) III; wgIs685) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans athp-1

tag: antibody

value: whole organism

tag: biosample encode accession

tag: collection date

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ATHP-1

tag: Sex

value: pooled male and female

value: young adult

tag: age

value: unknown

tag: lab

tag: source

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

value: hour

tag: link

value: ENCBS241THI at ENCODE; https://www.encodeproject.org/ENCBS241THI/


title: TF ChIP-seq from whole organism (ENCLB666JPW)

description:
https://www.encodeproject.org/experiments/ENCSR534TFA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR534TFA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR767ZKR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB666JPW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP323 hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-2

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-2

value: hermaphrodite

value: late embryonic

value: ENCBS739JKF at ENCODE; https://www.encodeproject.org/ENCBS739JKF/


title: Control ChIP-seq from whole organism (ENCLB402BDA)

description:
https://www.encodeproject.org/experiments/ENCSR251JRS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Deaf1-eGFP fusion proteins.
experiment encode accession: ENCSR251JRS
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB402BDA
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Deaf1 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Deaf1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Deaf1

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS065INP at ENCODE; https://www.encodeproject.org/ENCBS065INP/


title: TF ChIP-seq from whole organism (ENCLB121MXQ)

description:
https://www.encodeproject.org/experiments/ENCSR875XJL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ATHP-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR875XJL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR862BLF
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB121MXQ
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ATHP-1

value: pooled male and female

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS271CPR at ENCODE; https://www.encodeproject.org/ENCBS271CPR/


title: TF ChIP-seq from whole organism (ENCLB155RFC)

description:
https://www.encodeproject.org/experiments/ENCSR579XVH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-83-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR579XVH
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR215YKL
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB155RFC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-83.

value: mixed stage (embryonic)

value: 1 hour

value: egg bleaching

value: ENCBS560CQP at ENCODE; https://www.encodeproject.org/ENCBS560CQP/


title: Control ChIP-seq from whole organism (ENCLB575CVE)

description:
https://www.encodeproject.org/experiments/ENCSR349TJN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hmr-eGFP fusion proteins.
experiment encode accession: ENCSR349TJN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB575CVE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hmr-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hmr

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hmr

value: embryonic

value: 0-24 hour

value: ENCBS866KMK at ENCODE; https://www.encodeproject.org/ENCBS866KMK/


title: Control ChIP-seq from whole organism (ENCLB000BEI)

description:
https://www.encodeproject.org/experiments/ENCSR089YGV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Jarid2-eGFP fusion proteins.
experiment encode accession: ENCSR089YGV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB000BEI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Jarid2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Jarid2

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Jarid2

value: Kevin White, UChicago

value: Kevin White

value: ENCBS689JJX at ENCODE; https://www.encodeproject.org/ENCBS689JJX/


title: TF ChIP-seq from whole organism (ENCLB844GWB)

description:
https://www.encodeproject.org/experiments/ENCSR697MUB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR697MUB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR805GAD
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB844GWB
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2500

source_name: Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans elt-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS915KXO at ENCODE; https://www.encodeproject.org/ENCBS915KXO/


title: TF ChIP-seq from whole organism (ENCLB856KYV)

description:
https://www.encodeproject.org/experiments/ENCSR836LVI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ALY-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR836LVI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR671YDD
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB856KYV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP502 (unc-119(tm4063) III; wgIs502) hermaphrodite early embryo 0 hours post synchronization using egg bleaching insertion targeting C. elegans aly-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ALY-1

value: early embryonic

value: egg bleaching

value: ENCBS647BZC at ENCODE; https://www.encodeproject.org/ENCBS647BZC/


title: TF ChIP-seq from whole organism (ENCLB439HNV)

description:
https://www.encodeproject.org/experiments/ENCSR534TFA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR534TFA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR767ZKR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB439HNV
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-2

value: late embryonic

value: ENCBS956HLK at ENCODE; https://www.encodeproject.org/ENCBS956HLK/


title: TF ChIP-seq from whole organism (ENCLB690KGV)

description:
https://www.encodeproject.org/experiments/ENCSR697MUB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR697MUB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR805GAD
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB690KGV
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2500

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: L1 larva

value: ENCBS798RCR at ENCODE; https://www.encodeproject.org/ENCBS798RCR/


title: Control ChIP-seq from whole organism (ENCLB832LPO)

description:
https://www.encodeproject.org/experiments/ENCSR098GAV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR098GAV
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB832LPO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain noc mixed sex larva (48 days) insertion targeting D. melanogaster noc

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to noc

value: pooled male and female

value: larva

value: 48 day

value: Kevin White, UChicago

value: Kevin White

value: ENCBS356BNG at ENCODE; https://www.encodeproject.org/ENCBS356BNG/


title: TF ChIP-seq from whole organism (ENCLB364IAD)

description:
https://www.encodeproject.org/experiments/ENCSR872HBZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y55F3AM.14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR872HBZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR810EEJ
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB364IAD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP608 (unc-119(tm4063); wgIs608 [Y55F3AM.14::TY::EGFP::3xFLAG(p_wTRG5_insertion_c_0075_1C04) + unc-119(+)]) mixed sex L2 larva (42 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans Y55F3AM.1...

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y55F3AM.14.

value: L2 larva

value: 42 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS815YZC at ENCODE; https://www.encodeproject.org/ENCBS815YZC/


title: TF ChIP-seq from whole organism (ENCLB822KDY)

description:
https://www.encodeproject.org/experiments/ENCSR836LVI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ALY-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR836LVI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR671YDD
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB822KDY
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ALY-1

value: hermaphrodite

value: early embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS438OXE at ENCODE; https://www.encodeproject.org/ENCBS438OXE/


title: Control ChIP-seq from whole organism (ENCLB227KSH)

description:
https://www.encodeproject.org/experiments/ENCSR587BKG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing let-607-eGFP fusion proteins.
experiment encode accession: ENCSR587BKG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB227KSH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain YL651 (let-607(tm1423); unc-119(ed3) III; vrIs121[LET-607 fosmid, unc-119 (+)]) mixed sex young adult (49.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans let-607

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LET-607.

value: pooled male and female

value: young adult

value: 49.5 hour

value: ENCBS920OSU at ENCODE; https://www.encodeproject.org/ENCBS920OSU/


title: TF ChIP-seq from whole organism (ENCLB891WKL)

description:
https://www.encodeproject.org/experiments/ENCSR085FSS/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing NfI-eGFP fusion proteins.
experiment encode accession: ENCSR085FSS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR065VFN
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB891WKL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain NfI-GFP mixed sex embryo (12-24 hours) insertion targeting D. melanogaster NfI

value: NfI

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NfI

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS490SEK at ENCODE; https://www.encodeproject.org/ENCBS490SEK/


title: TF ChIP-seq from whole organism (ENCLB504PAU)

description:
https://www.encodeproject.org/experiments/ENCSR085FSS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing NfI-eGFP fusion proteins.
experiment encode accession: ENCSR085FSS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR065VFN
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB504PAU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS496IZZ at ENCODE; https://www.encodeproject.org/ENCBS496IZZ/


title: TF ChIP-seq from whole organism (ENCLB727CFO)

description:
https://www.encodeproject.org/experiments/ENCSR517OZM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HIF-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517OZM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR523RCF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB727CFO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OR3350 hermaphrodite L4 larva 55 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hif-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIF-1

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS222UYE at ENCODE; https://www.encodeproject.org/ENCBS222UYE/


title: TF ChIP-seq from whole organism (ENCLB546MRD)

description:
https://www.encodeproject.org/experiments/ENCSR872HBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y55F3AM.14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR872HBZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR810EEJ
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB546MRD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to Y55F3AM.14.

value: pooled male and female

value: L2 larva

value: 42 hour

value: ENCBS346BHP at ENCODE; https://www.encodeproject.org/ENCBS346BHP/


title: TF ChIP-seq from whole organism (ENCLB861SYO)

description:
https://www.encodeproject.org/experiments/ENCSR389SSP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing CEH-13-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR389SSP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR334ADQ
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB861SYO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP756 (unc-119(tm4063); wgIs756 [ceh-13::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (2 hours) using egg bleaching insertion targeting C. elegans ceh-13

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-13.

value: early embryonic

value: 2 hour

value: egg bleaching

value: ENCBS424SAG at ENCODE; https://www.encodeproject.org/ENCBS424SAG/


title: Mint-ChIP-seq from brain (ENCLB582OSH)

description:
https://www.encodeproject.org/experiments/ENCSR385SSH/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K36me3 Mint-ChIP-seq on human H9 derived brain organoid
experiment encode accession: ENCSR385SSH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR389BJR
encode release date: 2022-08-29
lab: Bradley Bernstein, Broad
library encode accession: ENCLB582OSH
fragmentation methods: none

organism: Homo sapiens

source_name: Homo sapiens female embryo (5 days) brain organoid, 180 days post differentiation

value: brain

value: organoid

value: female

tag: health state

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein, Broad

value: Paola Arlotta

value: ENCBS598CLB at ENCODE; https://www.encodeproject.org/ENCBS598CLB/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: TF ChIP-seq from whole organism (ENCLB962WYS)

description:
https://www.encodeproject.org/experiments/ENCSR389SSP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing CEH-13-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR389SSP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR334ADQ
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB962WYS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: pooled male and female

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS876WCL at ENCODE; https://www.encodeproject.org/ENCBS876WCL/


title: TF ChIP-seq from whole organism (ENCLB010MMG)

description:
https://www.encodeproject.org/experiments/ENCSR085FSS/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing NfI-eGFP fusion proteins.
experiment encode accession: ENCSR085FSS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR065VFN
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB010MMG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: NfI

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NfI

value: Kevin White, UChicago

value: Kevin White

value: ENCBS258ASC at ENCODE; https://www.encodeproject.org/ENCBS258ASC/


title: TF ChIP-seq from whole organism (ENCLB915KCD)

description:
https://www.encodeproject.org/experiments/ENCSR517OZM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HIF-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517OZM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR523RCF
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB915KCD
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIF-1

value: hermaphrodite

value: L4 larva

value: unknown

value: L1 larva starved after bleaching

value: hour

value: ENCBS518ZMJ at ENCODE; https://www.encodeproject.org/ENCBS518ZMJ/


title: Control ChIP-seq from whole organism (ENCLB851EBX)

description:
https://www.encodeproject.org/experiments/ENCSR830PLY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZTF-18-eGFP fusion proteins.
experiment encode accession: ENCSR830PLY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB851EBX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP496 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-18

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-18

value: young adult

value: ENCBS793JSO at ENCODE; https://www.encodeproject.org/ENCBS793JSO/


title: Control ChIP-seq from BLaER1 (ENCLB263GAO)

description:
https://www.encodeproject.org/experiments/ENCSR871SEB/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 12 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR871SEB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB263GAO
fragmentation methods: shearing (Covaris generic)

source_name: Homo sapiens BLaER1 cell line 12 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1

tag: line

value: cell line

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

tag: treatments

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS932XAE at ENCODE; https://www.encodeproject.org/ENCBS932XAE/


title: Control ChIP-seq from whole organism (ENCLB462AUO)

description:
https://www.encodeproject.org/experiments/ENCSR523RCF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HIF-1-eGFP fusion proteins.
experiment encode accession: ENCSR523RCF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB462AUO
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HIF-1

value: hermaphrodite

tag: dev stage

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS052FPS at ENCODE; https://www.encodeproject.org/ENCBS052FPS/


title: TF ChIP-seq from whole organism (ENCLB260VCT)

description:
https://www.encodeproject.org/experiments/ENCSR575DJF/
***************
biological replicate number: 7
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ham-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR575DJF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR283FJI
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB260VCT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP639 (wgIs639 [ham-2::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching insertion targeting C. elegans ham-2

tag: antibody

value: whole organisms

tag: biosample encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HAM-2.

value: pooled male and female

value: mixed stage (embryonic)

value: 3 hour

value: egg bleaching

value: ENCBS931CBF at ENCODE; https://www.encodeproject.org/ENCBS931CBF/


title: Control ChIP-seq from whole organism (ENCLB344QSK)

description:
https://www.encodeproject.org/experiments/ENCSR507IIG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-14-eGFP fusion proteins.
experiment encode accession: ENCSR507IIG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB344QSK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP315 hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-14

tag: collection date

value: not applicable

tag: geographic location

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-14

value: late embryonic

value: unknown

value: hour

value: ENCBS188YNZ at ENCODE; https://www.encodeproject.org/ENCBS188YNZ/


title: Control ChIP-seq from BLaER1 (ENCLB296GHL)

description:
https://www.encodeproject.org/experiments/ENCSR871SEB/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 12 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR871SEB
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB296GHL
fragmentation methods: shearing (Covaris generic)

value: cell line

tag: encode accession

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS900NVU at ENCODE; https://www.encodeproject.org/ENCBS900NVU/


title: Control ChIP-seq from whole organism (ENCLB760JKF)

description:
https://www.encodeproject.org/experiments/ENCSR082YVU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sqz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR082YVU
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB760JKF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sqz-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster sqz

value: whole organism

value: whole organisms

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sqz

tag: Sex

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS062TAN at ENCODE; https://www.encodeproject.org/ENCBS062TAN/


title: TF ChIP-seq from whole organism (ENCLB362CLT)

description:
https://www.encodeproject.org/experiments/ENCSR575DJF/
***************
biological replicate number: 6
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ham-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR575DJF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR283FJI
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB362CLT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HAM-2.

value: mixed stage (embryonic)

tag: age

value: 3 hour

tag: lab

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS482VMZ at ENCODE; https://www.encodeproject.org/ENCBS482VMZ/


title: TF ChIP-seq from whole organism (ENCLB480APE)

description:
https://www.encodeproject.org/experiments/ENCSR342YUI/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ash1-eGFP fusion proteins.
experiment encode accession: ENCSR342YUI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR010TXY
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB480APE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Ash1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ash1

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ash1

value: 0-24 hour

tag: source

value: ENCBS520BQF at ENCODE; https://www.encodeproject.org/ENCBS520BQF/


title: TF ChIP-seq from whole organism (ENCLB579EEL)

description:
https://www.encodeproject.org/experiments/ENCSR505TSF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SDZ-38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR505TSF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR246FAX
encode release date: 2016-07-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB579EEL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP543 hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans sdz-38

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SDZ-38

value: hermaphrodite

value: young adult

value: unknown

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

value: hour

value: ENCBS465QYU at ENCODE; https://www.encodeproject.org/ENCBS465QYU/


title: Control ChIP-seq from whole organism (ENCLB746DFD)

description:
https://www.encodeproject.org/experiments/ENCSR082WMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ATbp-eGFP fusion proteins.
experiment encode accession: ENCSR082WMZ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB746DFD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ATbp-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster ATbp

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ATbp

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

tag: link

value: ENCBS485FFG at ENCODE; https://www.encodeproject.org/ENCBS485FFG/


title: TF ChIP-seq from whole organism (ENCLB875UEI)

description:
https://www.encodeproject.org/experiments/ENCSR388MJH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-79-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR388MJH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR065TMZ
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB875UEI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP553 (unc-119(tm4063) III; wgIs553) mixed sex young adult 66 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-79

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-79

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: post synchronization time units

value: ENCBS509QBP at ENCODE; https://www.encodeproject.org/ENCBS509QBP/


title: TF ChIP-seq from whole organism (ENCLB958NBG)

description:
https://www.encodeproject.org/experiments/ENCSR388MJH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-79-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR388MJH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR065TMZ
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB958NBG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: young adult

value: unknown

value: ENCBS821UTY at ENCODE; https://www.encodeproject.org/ENCBS821UTY/


title: Control ChIP-seq from whole organism (ENCLB600KPX)

description:
https://www.encodeproject.org/experiments/ENCSR821PFS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZIP-5-eGFP fusion proteins.
experiment encode accession: ENCSR821PFS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB600KPX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP544 (unc-119(tm4063) III; wgIs544) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans zip-5

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZIP-5

value: hermaphrodite

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS615HXF at ENCODE; https://www.encodeproject.org/ENCBS615HXF/


title: Control ChIP-seq from BLaER1 (ENCLB478MSM)

description:
https://www.encodeproject.org/experiments/ENCSR566AUD/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 6 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR566AUD
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB478MSM
fragmentation methods: shearing (Covaris generic)

source_name: Homo sapiens BLaER1 cell line 6 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1

tag: line

value: cell line

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS584ALJ at ENCODE; https://www.encodeproject.org/ENCBS584ALJ/


title: TF ChIP-seq from whole organism (ENCLB098GHR)

description:
https://www.encodeproject.org/experiments/ENCSR342YUI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ash1-eGFP fusion proteins.
experiment encode accession: ENCSR342YUI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR010TXY
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB098GHR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Ash1

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS891GHS at ENCODE; https://www.encodeproject.org/ENCBS891GHS/


title: Control ChIP-seq from BLaER1 (ENCLB240IKT)

description:
https://www.encodeproject.org/experiments/ENCSR566AUD/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 6 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR566AUD
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB240IKT
fragmentation methods: shearing (Covaris generic)

value: not applicable

value: unknown

tag: treatments

value: ENCBS411JBC at ENCODE; https://www.encodeproject.org/ENCBS411JBC/


title: TF ChIP-seq from whole organism (ENCLB145ASV)

description:
https://www.encodeproject.org/experiments/ENCSR869PRN/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-26-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR869PRN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR173JYR
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB145ASV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP565 (unc-119(tm4063) III; wgIs565) mixed sex young adult 56 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-26

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-26

tag: dev stage

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS093FSQ at ENCODE; https://www.encodeproject.org/ENCBS093FSQ/


title: TF ChIP-seq from whole organism (ENCLB176KGH)

description:
https://www.encodeproject.org/experiments/ENCSR082FZF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2875-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR082FZF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR665ROL
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB176KGH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2875-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG2875

tag: antibody

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2875

value: 0-14 hour

value: ENCBS114AEF at ENCODE; https://www.encodeproject.org/ENCBS114AEF/


title: TF ChIP-seq from whole organism (ENCLB964ISX)

description:
https://www.encodeproject.org/experiments/ENCSR992FVB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SMA-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR992FVB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR101VVI
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB964ISX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain CS152 (sma-3(wk30);qcIs[gfp::sma-3+rol-6]) hermaphrodite L2 larva 24 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using microinjection targeting C. ...

tag: biosample encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SMA-3

value: hermaphrodite

value: L2 larva

value: ENCBS370EIX at ENCODE; https://www.encodeproject.org/ENCBS370EIX/


title: TF ChIP-seq from whole organism (ENCLB870LUF)

description:
https://www.encodeproject.org/experiments/ENCSR082FZF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG2875-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR082FZF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR665ROL
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB870LUF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

tag: collection date

value: not applicable

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS755OKD at ENCODE; https://www.encodeproject.org/ENCBS755OKD/


title: Control ChIP-seq from whole organism (ENCLB617UJU)

description:
https://www.encodeproject.org/experiments/ENCSR080OFD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG12219-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR080OFD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB617UJU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12219-GFP mixed sex embryo (0-18 hours) insertion targeting D. melanogaster CG12219

tag: geographic location

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12219

value: 0-18 hour

value: ENCBS427FUU at ENCODE; https://www.encodeproject.org/ENCBS427FUU/


title: TF ChIP-seq from whole organism (ENCLB275ZUR)

description:
https://www.encodeproject.org/experiments/ENCSR992FVB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SMA-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR992FVB
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR101VVI
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB275ZUR
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

tag: encode accession

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS835DNX at ENCODE; https://www.encodeproject.org/ENCBS835DNX/


title: TF ChIP-seq from whole organism (ENCLB039USY)

description:
https://www.encodeproject.org/experiments/ENCSR869PRN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZTF-26-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR869PRN
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR173JYR
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB039USY
fragmentation methods: sonication (generic microtip)

value: not applicable

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-26

value: young adult

value: ENCBS984NQJ at ENCODE; https://www.encodeproject.org/ENCBS984NQJ/


title: Control ChIP-seq from whole organism (ENCLB398EDK)

description:
https://www.encodeproject.org/experiments/ENCSR076KHT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG15269-eGFP fusion proteins.
experiment encode accession: ENCSR076KHT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB398EDK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (6-18 hours) insertion targeting D. melanogaster CG15269

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15269

tag: Sex

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS363XZM at ENCODE; https://www.encodeproject.org/ENCBS363XZM/


title: Control ChIP-seq from whole organism (ENCLB732NHM)

description:
https://www.encodeproject.org/experiments/ENCSR869CPS/
***************
biological replicate number: 7
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEBP-1-eGFP fusion proteins.
experiment encode accession: ENCSR869CPS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB732NHM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP563 (unc-119(tm4063) III; wgIs563) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans cebp-1

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEBP-1

tag: age

value: ENCBS151CKV at ENCODE; https://www.encodeproject.org/ENCBS151CKV/


title: Control ChIP-seq from whole organism (ENCLB840JPB)

description:
https://www.encodeproject.org/experiments/ENCSR814NFI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SNPC-4-eGFP fusion proteins.
experiment encode accession: ENCSR814NFI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB840JPB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL487 hermaphrodite young adult 60 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans snpc-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SNPC-4

value: hermaphrodite

value: unknown

tag: lab

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS190HNO at ENCODE; https://www.encodeproject.org/ENCBS190HNO/


title: TF ChIP-seq from whole organism (ENCLB154IEP)

description:
https://www.encodeproject.org/experiments/ENCSR498FBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR498FBJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR842PNM
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB154IEP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP523 (unc-119(tm4063) III; wgIs523) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hlh-4

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-4

value: L1 larva

tag: source

value: hour

value: ENCBS592RDQ at ENCODE; https://www.encodeproject.org/ENCBS592RDQ/


title: Control ChIP-seq from whole organism (ENCLB091FLD)

description:
https://www.encodeproject.org/experiments/ENCSR869CPS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEBP-1-eGFP fusion proteins.
experiment encode accession: ENCSR869CPS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB091FLD
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: young adult

tag: worm synchronization stage

value: ENCBS737HJQ at ENCODE; https://www.encodeproject.org/ENCBS737HJQ/


title: TF ChIP-seq from whole organism (ENCLB966LVE)

description:
https://www.encodeproject.org/experiments/ENCSR387HSD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F13C5.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR387HSD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR223SII
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB966LVE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) mixed sex early embryo 1 hour post synchronization using egg bleaching insertion targeting C. elegans F13C5.2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F13C5.2

value: early embryonic

value: egg bleaching

tag: post synchronization time

value: ENCBS003CCQ at ENCODE; https://www.encodeproject.org/ENCBS003CCQ/


title: TF ChIP-seq from whole organism (ENCLB151WWO)

description:
https://www.encodeproject.org/experiments/ENCSR572AWO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pat-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR572AWO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR908QFK
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB151WWO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12085 (pat-9(mNG^SEC^3xFlag::pat-9]) X) mixed sex late embryo (3 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans pat-9

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAT-9.

value: late embryonic

value: 3 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: link

value: ENCBS305MEK at ENCODE; https://www.encodeproject.org/ENCBS305MEK/


title: TF ChIP-seq from whole organism (ENCLB636UVM)

description:
https://www.encodeproject.org/experiments/ENCSR505TSF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SDZ-38-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR505TSF
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR246FAX
encode release date: 2016-07-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB636UVM
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SDZ-38

value: hermaphrodite

value: unknown

value: L1 larva starved after bleaching

tag: post synchronization time units

value: hour

value: ENCBS409CRA at ENCODE; https://www.encodeproject.org/ENCBS409CRA/


title: Control ChIP-seq from whole organism (ENCLB901LNU)

description:
https://www.encodeproject.org/experiments/ENCSR080DBI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing crp-eGFP fusion proteins.
experiment encode accession: ENCSR080DBI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB901LNU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain crp-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster crp

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to crp

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS917QPL at ENCODE; https://www.encodeproject.org/ENCBS917QPL/


title: TF ChIP-seq from whole organism (ENCLB546GMN)

description:
https://www.encodeproject.org/experiments/ENCSR498FBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HLH-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR498FBJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR842PNM
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB546GMN
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-4

value: L1 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS299ACZ at ENCODE; https://www.encodeproject.org/ENCBS299ACZ/


title: Control ChIP-seq from whole organism (ENCLB014ZPG)

description:
https://www.encodeproject.org/experiments/ENCSR074DEG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR074DEG
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB014ZPG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9948 pupa (24 hours) insertion targeting D. melanogaster CG9948

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9948

value: not collected

value: pupa

value: 24 hour

value: ENCBS520FCZ at ENCODE; https://www.encodeproject.org/ENCBS520FCZ/


title: Control ChIP-seq from whole organism (ENCLB895ORW)

description:
https://www.encodeproject.org/experiments/ENCSR490CWU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SMA-9-eGFP fusion proteins.
experiment encode accession: ENCSR490CWU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB895ORW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain LW1254 (jjIs1254[Im486.2: pJKL723.2(sma-9C2::gfp+unc-119(+) ]; unc-119(ed4)) hermaphrodite L2 larva 22 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans sma-9

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SMA-9

value: hermaphrodite

value: L2 larva

value: unknown

value: L1 larva starved after bleaching

value: hour

value: ENCBS201PBE at ENCODE; https://www.encodeproject.org/ENCBS201PBE/


title: Control ChIP-seq from whole organism (ENCLB493DXO)

description:
https://www.encodeproject.org/experiments/ENCSR981QSV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NPAX-4-eGFP fusion proteins.
experiment encode accession: ENCSR981QSV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB493DXO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP493 (unc-119(tm4063) III; wgIs493) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans npax-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NPAX-4

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS309CGO at ENCODE; https://www.encodeproject.org/ENCBS309CGO/


title: TF ChIP-seq from whole organism (ENCLB102QIA)

description:
https://www.encodeproject.org/experiments/ENCSR073PHL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cic-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR073PHL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR860XAM
encode release date: 2017-12-14
lab: Kevin White, UChicago
library encode accession: ENCLB102QIA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cic-GFP mixed sex adult insertion targeting D. melanogaster cic

value: cic

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cic

value: pooled male and female

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS993NGC at ENCODE; https://www.encodeproject.org/ENCBS993NGC/


title: Control ChIP-seq from whole organism (ENCLB538RMK)

description:
https://www.encodeproject.org/experiments/ENCSR484UJP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing TBX-2-eGFP fusion proteins.
experiment encode accession: ENCSR484UJP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB538RMK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP159 (unc-119(ed3) III; wgIs159) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans tbx-2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-2

value: hermaphrodite

value: L1 larva

value: unknown

value: L1 larva starved after bleaching

value: ENCBS990OPA at ENCODE; https://www.encodeproject.org/ENCBS990OPA/


title: Control ChIP-seq from whole organism (ENCLB519OPJ)

description:
https://www.encodeproject.org/experiments/ENCSR250MXW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tap-eGFP fusion proteins.
experiment encode accession: ENCSR250MXW
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB519OPJ
size range: 200-800

source_name: Drosophila melanogaster strain tap mixed sex embryo (6-16 hours) insertion targeting D. melanogaster tap

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tap

value: embryonic

value: ENCBS878LPV at ENCODE; https://www.encodeproject.org/ENCBS878LPV/


title: Control ChIP-seq from whole organism (ENCLB766QRD)

description:
https://www.encodeproject.org/experiments/ENCSR569VQG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing VAB-15-eGFP fusion proteins.
experiment encode accession: ENCSR569VQG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB766QRD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain XIL99 mixed sex L1 larva at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans vab-15

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to VAB-15

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS386GFI at ENCODE; https://www.encodeproject.org/ENCBS386GFI/


title: TF ChIP-seq from whole organism (ENCLB429ZJS)

description:
https://www.encodeproject.org/experiments/ENCSR980XNE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NPAX-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR980XNE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR981QSV
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB429ZJS
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NPAX-4

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS386VJJ at ENCODE; https://www.encodeproject.org/ENCBS386VJJ/


title: TF ChIP-seq from whole organism (ENCLB923RLV)

description:
https://www.encodeproject.org/experiments/ENCSR565YWG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing K02D7.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR565YWG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR667YZB
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB923RLV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP698 (unc-119(tm4063) III; wgIs698) mixed sex late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans snai-1

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to K02D7.2

value: pooled male and female

value: ENCBS310DOC at ENCODE; https://www.encodeproject.org/ENCBS310DOC/


title: Control ChIP-seq from whole organism (ENCLB440PZU)

description:
https://www.encodeproject.org/experiments/ENCSR481GBB/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing UNC-86-eGFP fusion proteins.
experiment encode accession: ENCSR481GBB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB440PZU
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP476 (unc-119(tm4063) III; wgIs476) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans unc-86

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-86

value: hermaphrodite

value: unknown

value: ENCBS688GJW at ENCODE; https://www.encodeproject.org/ENCBS688GJW/


title: Control ChIP-seq from whole organism (ENCLB762TBT)

description:
https://www.encodeproject.org/experiments/ENCSR072UGA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing nmo-eGFP fusion proteins.
experiment encode accession: ENCSR072UGA
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB762TBT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain nmo-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster nmo

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to nmo

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS838ZNY at ENCODE; https://www.encodeproject.org/ENCBS838ZNY/


title: TF ChIP-seq from whole organism (ENCLB902IJY)

description:
https://www.encodeproject.org/experiments/ENCSR565YWG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing K02D7.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR565YWG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR667YZB
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB902IJY
fragmentation methods: sonication (generic microtip)

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS289SGL at ENCODE; https://www.encodeproject.org/ENCBS289SGL/


title: Control ChIP-seq from whole organism (ENCLB219XZL)

description:
https://www.encodeproject.org/experiments/ENCSR072SOX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG1529-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR072SOX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB219XZL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1529-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG1529

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1529

value: pooled male and female

value: 0-14 hour

value: ENCBS377FWM at ENCODE; https://www.encodeproject.org/ENCBS377FWM/


title: TF ChIP-seq from whole organism (ENCLB820OIU)

description:
https://www.encodeproject.org/experiments/ENCSR980XNE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NPAX-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR980XNE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR981QSV
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB820OIU
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NPAX-4

value: hermaphrodite

value: unknown

value: ENCBS800ZFC at ENCODE; https://www.encodeproject.org/ENCBS800ZFC/


title: Control ChIP-seq from whole organism (ENCLB722TLO)

description:
https://www.encodeproject.org/experiments/ENCSR072SDA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing E(spl)m-beta-eGFP fusion proteins.
experiment encode accession: ENCSR072SDA
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB722TLO
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m-beta-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster E(spl)mbeta-HLH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Esplm-B

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS777TCN at ENCODE; https://www.encodeproject.org/ENCBS777TCN/


title: TF ChIP-seq from whole organism (ENCLB141BBN)

description:
https://www.encodeproject.org/experiments/ENCSR565RZD/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR565RZD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR608KZR
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB141BBN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP614 (unc-119(tm4063); wgIs614 [ztf-3::TY1::EGFP::3xFLAG +;unc-119(+)]) mixed sex young adult (58 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ztf-3

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-3.

value: young adult

value: 58 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS604XZW at ENCODE; https://www.encodeproject.org/ENCBS604XZW/


title: Control ChIP-seq from whole organism (ENCLB284OUD)

description:
https://www.encodeproject.org/experiments/ENCSR560IUO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing t20f7.1-eGFP fusion proteins.
experiment encode accession: ENCSR560IUO
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB284OUD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP754 (wgIs754 [T20F7.1::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans T20F7.1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to T20F7.1.

value: pooled male and female

value: L4 larva

value: 48 hour

value: ENCBS769CFA at ENCODE; https://www.encodeproject.org/ENCBS769CFA/


title: TF ChIP-seq from whole organism (ENCLB928BMX)

description:
https://www.encodeproject.org/experiments/ENCSR673WIC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673WIC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR507IIG
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB928BMX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP315 hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-14

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-14

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS127JVU at ENCODE; https://www.encodeproject.org/ENCBS127JVU/


title: TF ChIP-seq from whole organism (ENCLB225TRI)

description:
https://www.encodeproject.org/experiments/ENCSR674PDL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing duxl-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR674PDL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR917QWA
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB225TRI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP470 (unc-119(tm4063) III; wgIs470) hermaphrodite L4 larva insertion targeting C. elegans duxl-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to duxl-1

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS720XCO at ENCODE; https://www.encodeproject.org/ENCBS720XCO/


title: Control ChIP-seq from whole organism (ENCLB333DRJ)

description:
https://www.encodeproject.org/experiments/ENCSR072FJD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11617-eGFP fusion proteins.
experiment encode accession: ENCSR072FJD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-02-01
lab: Kevin White, UChicago
library encode accession: ENCLB333DRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11617-GFP mixed sex adult insertion targeting D. melanogaster CG11617

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11617

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS538EBX at ENCODE; https://www.encodeproject.org/ENCBS538EBX/


title: TF ChIP-seq from whole organism (ENCLB830AGW)

description:
https://www.encodeproject.org/experiments/ENCSR674PDL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing duxl-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR674PDL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR917QWA
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB830AGW
fragmentation methods: sonication (generic microtip)

value: hermaphrodite

value: L4 larva

value: ENCBS306NON at ENCODE; https://www.encodeproject.org/ENCBS306NON/


title: Control ChIP-seq from whole organism (ENCLB032ASO)

description:
https://www.encodeproject.org/experiments/ENCSR071KGD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing pzg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR071KGD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB032ASO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pzg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pzg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pzg

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS594QIU at ENCODE; https://www.encodeproject.org/ENCBS594QIU/


title: Control ChIP-seq from whole organism (ENCLB725RBG)

description:
https://www.encodeproject.org/experiments/ENCSR248DUF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG14655-eGFP fusion proteins.
experiment encode accession: ENCSR248DUF
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB725RBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG14655-GFP mixed sex pupa (48 days) insertion targeting D. melanogaster CG14655

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14655

value: pupa

value: 48 day

value: ENCBS780QML at ENCODE; https://www.encodeproject.org/ENCBS780QML/


title: TF ChIP-seq from whole organism (ENCLB064JOT)

description:
https://www.encodeproject.org/experiments/ENCSR073PHL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cic-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR073PHL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR860XAM
encode release date: 2017-12-14
lab: Kevin White, UChicago
library encode accession: ENCLB064JOT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: cic

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cic

value: adult

value: unknown

value: ENCBS135BRU at ENCODE; https://www.encodeproject.org/ENCBS135BRU/


title: TF ChIP-seq from whole organism (ENCLB794HLC)

description:
https://www.encodeproject.org/experiments/ENCSR572AWO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing pat-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR572AWO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR908QFK
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB794HLC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12085 (pat-9(mNG^SEC^3xFlag::pat-9]) X) mixed sex late embryo (3 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans pat-9

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to PAT-9.

value: late embryonic

value: 3 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS772XGD at ENCODE; https://www.encodeproject.org/ENCBS772XGD/


title: Control ChIP-seq from whole organism (ENCLB457TIQ)

description:
https://www.encodeproject.org/experiments/ENCSR073DRW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing coRest-eGFP fusion proteins.
experiment encode accession: ENCSR073DRW
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB457TIQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CoRest

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to coRest

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS114DIZ at ENCODE; https://www.encodeproject.org/ENCBS114DIZ/


title: Control ChIP-seq from whole organism (ENCLB390YJS)

description:
https://www.encodeproject.org/experiments/ENCSR557QUA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing LIN-14-eGFP fusion proteins.
experiment encode accession: ENCSR557QUA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB390YJS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP768 (unc-119(tm4063); wgls768 [lin-14::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans lin-14

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-14.

value: L1 larva

value: 6 hour

value: L1 larva starved after bleaching

value: ENCBS579QSF at ENCODE; https://www.encodeproject.org/ENCBS579QSF/


title: TF ChIP-seq from whole organism (ENCLB403ZAO)

description:
https://www.encodeproject.org/experiments/ENCSR862DMN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hlh-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR862DMN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR730YCH
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB403ZAO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP396 (unc-119(tm4063) III; wgIs396) mixed sex L4 larva (53 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans hlh-11

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-11.

value: L4 larva

value: 53 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS166EMA at ENCODE; https://www.encodeproject.org/ENCBS166EMA/


title: Control ChIP-seq from whole organism (ENCLB063IEX)

description:
https://www.encodeproject.org/experiments/ENCSR553MTY/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing mxl-3-eGFP fusion proteins.
experiment encode accession: ENCSR553MTY
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB063IEX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP745 (wgIs745 [mxl-3::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans mxl-3

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MXL-3.

value: pooled male and female

value: 48 hour

value: ENCBS224OFZ at ENCODE; https://www.encodeproject.org/ENCBS224OFZ/


title: TF ChIP-seq from whole organism (ENCLB332MFH)

description:
https://www.encodeproject.org/experiments/ENCSR673WIC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673WIC
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR507IIG
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB332MFH
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-14

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS721EGC at ENCODE; https://www.encodeproject.org/ENCBS721EGC/


title: Control ChIP-seq from BLaER1 (ENCLB811SWD)

description:
https://www.encodeproject.org/experiments/ENCSR845IKY/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 36 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR845IKY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB811SWD
fragmentation methods: shearing (Covaris generic)

source_name: Homo sapiens BLaER1 cell line 36 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1

tag: line

value: cell line

value: female

value: Roderic Guigo, CRG

value: Thomas Graf

value: treatment_term_id:CHEBI:16469; treatment_term_name:17beta-estradiol; treatment_type:chemical; treatment_term_id:UniProtKB:P08700; treatment_term_name:Interleukin-3; treatment_type:protein; treatment_term_id:UniProtKB:P09603; treatment_term_name:CSF1; treatment_type:protein;

value: ENCBS943SUL at ENCODE; https://www.encodeproject.org/ENCBS943SUL/


title: TF ChIP-seq from whole organism (ENCLB960TPH)

description:
https://www.encodeproject.org/experiments/ENCSR977VOU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MES-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR977VOU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR449ROG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB960TPH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP248 hermaphrodite L4 larva insertion targeting C. elegans mes-2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MES-2

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS925PIY at ENCODE; https://www.encodeproject.org/ENCBS925PIY/


title: Control ChIP-seq from BLaER1 (ENCLB107EZB)

description:
https://www.encodeproject.org/experiments/ENCSR845IKY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-Seq on BLaER1 cell line after 36 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR845IKY
assay title: Control ChIP-seq
assembly: GRCh38
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB107EZB
fragmentation methods: shearing (Covaris generic)

value: not applicable

tag: treatments

value: ENCBS769LHW at ENCODE; https://www.encodeproject.org/ENCBS769LHW/


title: TF ChIP-seq from whole organism (ENCLB758XZQ)

description:
https://www.encodeproject.org/experiments/ENCSR977VOU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MES-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR977VOU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR449ROG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB758XZQ
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: hermaphrodite

tag: dev stage

value: unknown

value: ENCBS596XMO at ENCODE; https://www.encodeproject.org/ENCBS596XMO/


title: TF ChIP-seq from whole organism (ENCLB264BFG)

description:
https://www.encodeproject.org/experiments/ENCSR184CKS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Fer1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR184CKS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR022ZVU
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB264BFG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Fer1-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster Fer1

tag: antibody

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer1

value: pooled male and female

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS236CKM at ENCODE; https://www.encodeproject.org/ENCBS236CKM/


title: TF ChIP-seq from whole organism (ENCLB737QBU)

description:
https://www.encodeproject.org/experiments/ENCSR565RZD/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR565RZD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR608KZR
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB737QBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

tag: biosample encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZTF-3.

value: young adult

value: 58 hour

value: L1 larva starved after bleaching

value: ENCBS725QCM at ENCODE; https://www.encodeproject.org/ENCBS725QCM/


title: Control ChIP-seq from whole organism (ENCLB107BIV)

description:
https://www.encodeproject.org/experiments/ENCSR862BLF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ATHP-1-eGFP fusion proteins.
experiment encode accession: ENCSR862BLF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB107BIV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP685 (unc-119(tm4063) III; wgIs685) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans athp-1

tag: collection date

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ATHP-1

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS956FZJ at ENCODE; https://www.encodeproject.org/ENCBS956FZJ/


title: TF ChIP-seq from whole organism (ENCLB549GOP)

description:
https://www.encodeproject.org/experiments/ENCSR183WTG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183WTG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860PIR
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB549GOP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2202 embryo (0-12 hours) insertion targeting D. melanogaster CG2202

value: whole organisms

tag: geographic location

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2202

value: not collected

value: 0-12 hour

value: ENCBS590SME at ENCODE; https://www.encodeproject.org/ENCBS590SME/


title: TF ChIP-seq from whole organism (ENCLB830SJO)

description:
https://www.encodeproject.org/experiments/ENCSR862DMN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hlh-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR862DMN
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR730YCH
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB830SJO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

tag: encode accession

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-11.

value: pooled male and female

value: L4 larva

value: 53 hour

value: ENCBS986WRP at ENCODE; https://www.encodeproject.org/ENCBS986WRP/


title: TF ChIP-seq from whole organism (ENCLB520WAL)

description:
https://www.encodeproject.org/experiments/ENCSR807UTG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-86-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR807UTG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR064VSR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB520WAL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP476 (unc-119(tm4063) III; wgIs476) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans unc-86

value: not applicable

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-86

value: hermaphrodite

value: L1 larva

value: unknown

value: L1 larva starved after bleaching

value: ENCBS182KZZ at ENCODE; https://www.encodeproject.org/ENCBS182KZZ/


title: TF ChIP-seq from whole organism (ENCLB435WYI)

description:
https://www.encodeproject.org/experiments/ENCSR184CKS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Fer1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR184CKS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR022ZVU
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB435WYI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Fer1

tag: Sex

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS586AHU at ENCODE; https://www.encodeproject.org/ENCBS586AHU/


title: TF ChIP-seq from whole organism (ENCLB449WYG)

description:
https://www.encodeproject.org/experiments/ENCSR807UTG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-86-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR807UTG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR064VSR
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB449WYG
fragmentation methods: sonication (generic microtip)

value: whole organism

tag: age

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS488YWJ at ENCODE; https://www.encodeproject.org/ENCBS488YWJ/


title: TF ChIP-seq from whole organism (ENCLB974CDJ)

description:
https://www.encodeproject.org/experiments/ENCSR549VKC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tbx-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR549VKC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR170TEC
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB974CDJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW10470 (st10470 [tbx-8::TY1::EGFP::3xFLAG; unc-119(+)]; unc-119(ed3)) mixed sex mixed stage (embryo) (2.5 hours) using egg bleaching insertion targeting C. elegans tbx-8

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-8.

value: pooled male and female

value: mixed stage (embryonic)

value: 2.5 hour

tag: lab

value: egg bleaching

value: ENCBS464TCX at ENCODE; https://www.encodeproject.org/ENCBS464TCX/