title: 3T3-L1 Zfp407

city: Cleveland

first: David

last: Buchner

state: OH

address: 10900 Euclid Ave

department: Genetics and Genome Sciences

institute: Case Western Reserve University

data_processing:
The FASTX-Toolkit v0.0.13 was used to quality filter reads  using a quality score cutoff of 20
Reads were aligned to the mouse genome (mm10) using Bowtie2 and any reads with at least one mismatch were discarded.
PCR duplicates were also removed using SAMtools
The MACS2 algorithm was used to identify peaks (q-value < 0.001) using the narrow filter and excluding ENCODE blacklist sites.
control bias-corrected bedGraphs, generated by MACS2 were converted to bigWIGs and used for genome browser visualization
Assembly: mm10
Supplementary files format and content: bigWig

growth_protocol: 3T3‐L1 fibroblasts were cultured in high‐glucose DMEM supplemented with 25 mMglucose and 10% FBS at 37° in 7.5% CO2incubator. For differentiation into adipocytes, fibroblasts are cultured for 2–5 days after reaching confluence with changes of medium every 4 days, after which the cells are cultured for 3 days in DMEM containing 10% fetal bovine serum, 1 μg/ml insulin, 0.25 μMdexamethasone, and 0.5 mMmethylisobutylxanthine and for 2 days in DMEM containing 10% fetal bovine serum and 1 μg/ml insulin. After differentiation, adipocytes are maintained in DMEM supplemented with 10% fetal bovine serum.

extract_protocol:
Cells were fixed with 1% formaldehyde for 15 minutes at room temperature. After quenching and cell lysis, chromatin was sheared by sonication.
ChIP was carried out in 3T3-L1 differentiated adipocytes using 30 ug of cell chromatin. ChIP DNA was processed using the Illumina ChIP-Seq kit according to manufacturer’s protocols

value: Mouse adipocyte

tag: chip antibody

value: Zfp407 (custom generated)


title: OBR1

status: Public on Feb 27 2024

type: SRA

city: Heidelberg

first: Thileepan

last: Sekaran

address: Mayerhoffstarsse

country: Germany

institute: EMBL

library_source: transcriptomic

data_processing:
The raw sequenced reads were trimmed using cutadapt.
The trimmed reads were aligned to human genome(hg38) using STAR.
The aligned reads were quantified using FeatureCounts..
DESeq2 was used to compute the differetially regulated genes against the control samples respectively
ClusterProfiler was used for enrichment analysis
Assembly: hg38
Supplementary files format and content: Tab delimited text file that includes the raw counts for each sample

molecule: total RNA

organism: Homo sapiens

source_name: Osteoblasts cells - Control

growth_protocol: OSRH_2011/5, OSKG, I063_021, and NRH_GCT1 were cultured in DMEM medium (Thermo Fisher Scientific) supplemented with 10% fetal bovine serum (FBS, Thermo Fisher Scientific) and 1% nonessential amino acids (NEAA, Thermo Fisher Scientific). NRH_OS1 cells were cultured with addition of 0.2% Insulin-Transferrin-Ethanolamine-Selenium (ITES, #17-839Z, Lonza) and 1% vitamin mix (#13-607C, Lonza). The OB and MSCs were cultured in Osteoblast Growth Medium (C-27001, PromoCell) and Mesenchymal Stem Cell Growth Medium (C-28009, PromoCell), respectively.

extract_protocol:
Total RNA was isolated by Trizol, followed by precipitation using absolute alcohol and cleaned-up using Quick-RNA miniprep kit (Zymo Research).
Samples were prepared following the NEB Next stranded RNA with the Poly(A) mRNA magnetic isolation module (NEB #E7490). Samples were standardized to 160 ng input, with 15 minutes fragmentation, no size selection, 1:30 adapter dilution, and 13 PCR cycles. Samples were pooled equimolarly and size selected with a 0.6x bead ratio.
Samples were sequenced on the Illumina NextSeq 2000 platform with a 100 paired end sequencing program on a P2 flowcell.

tag: cell type

value: osteoblasts

tag: genotype

value: Control


title: I063021R1

source_name: Fast-growing osteosarcoma cell line with high translation rate, high level c-myc expression

value: osteosarcoma

value: test


title: OBR2


title: MSCR2

source_name: Mesenchyma cells - Control

value: mesenchyma


title: MSCR1


title: 5 s Irradiation vs Unirradiated Replicate 1

type: RNA

city: Braunschweig

first: Mattes

last: Hintmann

address: Rebenring 56

department: Institut für Mikrobiologie

institute: TU Braunschweig

description: Biological replicate 1 of 3

hyb_protocol: using the Gene Assay Hybridization Kit (Agilent) according to the manufacturers instructions and samples were applied to microarrays. After hybridization, slides were washed sequential

scan_protocol: the Agilent C Scanner (Agilent; Scan Control 8.4.1; Feature Extraction 10.7.3.1)

data_processing:
Agilent Scan Control 8.4.1 and Feature Extraction 10.7.3.1
normalized log10 ratio (Cy5/Cy3) representing test/reference

organism: Escherichia coli

source_name: Unirradiated cells (reference)

label_protocol: “ULS Fluorescent Labeling Kit for Agilent Arrays with Cy3 and Cy5” (Kreatech Biotechnology, Amsterdam, Netherlands) was used following the manufacturer´s instruction for two-colour microarray-based gene expression analysis

growth_protocol: E. coli cells were grown in LB-medium in baffled flasks until the exponential phase (180 rpm, 37 °C), sedimented (4000 xg, 10 min), washed three times and suspended in isotonic NaCl (9 g(L)

extract_protocol: Total RNA was extracted using RNeasyminiKit (Qiagen) and Dnase treated using TurboDNase (Thermo fisher) according to the manufacturers instructions

treatment_protocol: 2.5 mL of cells (OD578 nm) were transfered to a 10x20 mm quartz cuvette, the cells were the irradiated (448 nm, blue laser) for  5 s (310 J/cm2) or 20 s (1240 J/cm2) both with an intensity of 62 W/cm2, the cells were then transfered to a 15 mL tube and incubated at room temperature under slight agitation for 60 min, the cells were then pelleted (5 min, 4000 xg) and stored at -80 °C

tag: strain

tag: treatment

value: Unirradiated

source_name: irradiated cells 5 s

value: Irradiated 5 s


title: I063021R2


title: OSRH20115R1


title: NRHOSR2

source_name: slow-growing osteosarcome cell line


title: OSKGR2


title: OSRH20115R2


title: NRHGCTR2

source_name: Fast-growing bone cell tumor cell line, but phenotypically different from the osteosarcoma cells

value: bone-cell tumour


title: NRHOSR1


title: OSKGR1


title: NRHGCTR1


title: ChIPseq CEBPA IS15 24 ChIP input Rep 1

city: Berlin

first: Alexandre

middle: P

last: Magalhaes

address: Ihnestrasse 63-73

institute: Max Planck Institute for Molecular Genetics

description: ChIP-seq

library_source: genomic

data_processing:
Reads were mapped to genome using BWA and samtools was used for SAM to BAM conversion, sorting and indexing. Genome Analysis Toolkit v4 was used to remove duplicated reads. Peak calling was then performed using MACS3 v3.0.0 b1 using the input of the respective sample
genome_build: hg38

molecule: genomic DNA

source_name: B-cells

extract_protocol:
Five million cells were collected and cross-linked for 10 min using 1% formaldehyde and quenched using a final concentration of 0.125 M glycine. After a wash in cold PBS and centrifugation, pellets were lysed in 500 µl pre-cooled SDS lysis buffer (1% SDS, 10mM EDTA, 50 mM Tris pH8 and 1x PIC) and incubated on ice for 15 min. Chromatin was sheared on a Bioruptor pico sonicator (Diagenode) at 4°C for 18 cycles of 30s ON and 30s OFF. After sonication, the solution was clarified by centrifugation at 1,000g for 5 min at 4°C and supernatant was transferred to a low-bind tube and mixed with 900µl of ChIP dilution buffer (0.01% SDS, 1.1% Triton X-100, 1.2 mM EDTA, 16.7 mM Tris-HCl pH 8.0, 167 mM NaCl, 1X PIC) containing antibody-coupled beads (10µL anti-GFP, clone 3E6 A-11120, ThermoFisher and 35 µL of protein G magnetic beads, 10003D, ThermoFisher). Five percent were saved as input and the samples were incubated overnight at 4°C under rotation. The beads were then collected and washed with 500µL of low salt buffer (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.0, 150 mM NaCl), high salt buffer (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.0, 500 mM NaCl), RIPA-LiCl buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA, 250 mM LiCl, 0.5% NP-40, 0.5% Na-DOC) and twice with TE buffer (10 mM Tris-HCl pH 8.0, 1 mM EDTA). Beads were then collected and eluted in 70µL of Elution buffer (10 mM Tris-HCl pH 8.0, 5 mM EDTA, 300 mM NaCl, 0.5% SDS) and incubated with proteinase K for 1h at 55°C and then overnight at 65°C to reverse the cross-linking. Beads were collected and transferred to a new tube and a second step of elution was performed with 30 µL of Elution buffer. DNA was finally purified with a Qiagen MinElute column
3 ng of DNA were used to construct sequencing libraries using NEBNext® Ultra™ DNA Library Prep Kit for Illumina (E7370L).
Single-end 50bp with 50 million reads

value: B-cells

tag: age


title: ChIPseq CEBPA IS15 24 ChIP input Rep 2

description: ChIP-seq

value: anti-GFP, clone 3E6 A-11120, ThermoFisher


title: ChIPseq CEBPA IS15 48 ChIP input Rep 2

description: ChIP-seq


title: ChIPseq CEBPA IS15 48 ChIP input Rep 1

description: ChIP-seq


title: ChIPseq CEBPA WT 48 ChIP input Rep 2

description: ChIP-seq


title: ChIPseq CEBPA IS15 24 ChIP Rep 2

description: ChIP-seq


title: ChIPseq CEBPA IS15 24 ChIP Rep 1

description: ChIP-seq


title: ChIPseq CEBPA WT 48 ChIP Rep 2

description: ChIP-seq


title: ChIPseq CEBPA WT 48 ChIP input Rep 1

description: ChIP-seq


title: ChIPseq CEBPA WT 24 ChIP input Rep 1

description: ChIP-seq


title: Control ChIP-seq from whole organism (ENCLB900KEJ)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR529LDH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing wor-eGFP fusion proteins.
experiment encode accession: ENCSR529LDH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB900KEJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

data_processing: See GSM*_README.txt supplementary file linked below

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain wor-GFP embryo (0-18 hours) insertion targeting D. melanogaster wor

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: Sex

value: not collected

tag: dev stage

value: embryonic

value: 0-18 hour

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS521EDC at ENCODE; https://www.encodeproject.org/ENCBS521EDC/


title: TF ChIP-seq from whole organism (ENCLB446LZE)

description:
https://www.encodeproject.org/experiments/ENCSR532EVV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dbx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR532EVV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR430XGH
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB446LZE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dbx-GFP embryo (8-24 hours) insertion targeting D. melanogaster Dbx

tag: antibody

value: Dbx

value: ENCBS581WRW at ENCODE; https://www.encodeproject.org/ENCBS581WRW/


title: ChIPseq CEBPA WT 24 ChIP input Rep 2

description: ChIP-seq


title: ChIPseq CEBPA WT 24 ChIP Rep 1

description: ChIP-seq


title: Control ChIP-seq from whole organism (ENCLB494OBH)

description:
https://www.encodeproject.org/experiments/ENCSR528EUE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11247-eGFP fusion proteins.
experiment encode accession: ENCSR528EUE
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB494OBH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11247-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG11247

value: 0-24 hour

value: ENCBS404YBK at ENCODE; https://www.encodeproject.org/ENCBS404YBK/


title: TF ChIP-seq from whole organism (ENCLB098MUF)

description:
https://www.encodeproject.org/experiments/ENCSR532EVV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dbx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR532EVV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR430XGH
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB098MUF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS036NYB at ENCODE; https://www.encodeproject.org/ENCBS036NYB/


title: ChIPseq CEBPA IS15 48 ChIP Rep 2

description: ChIP-seq


title: TF ChIP-seq from whole organism (ENCLB508FNG)

description:
https://www.encodeproject.org/experiments/ENCSR528YUT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9215-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR528YUT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR141TJV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB508FNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9215-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG9215

value: ENCBS045RHU at ENCODE; https://www.encodeproject.org/ENCBS045RHU/


title: ChIPseq CEBPA WT 48 ChIP Rep 1

description: ChIP-seq

value: B-cells


title: ChIPseq CEBPA WT 24 ChIP Rep 2

description: ChIP-seq

value: anti-GFP, clone 3E6 A-11120, ThermoFisher


title: TF ChIP-seq from whole organism (ENCLB495BMF)

description:
https://www.encodeproject.org/experiments/ENCSR522KTT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dysf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522KTT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR361NFK
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB495BMF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dysf-GFP embryo (8-24 hours) insertion targeting D. melanogaster dysf

value: dysf

value: whole organism

value: ENCBS784HLZ at ENCODE; https://www.encodeproject.org/ENCBS784HLZ/


title: TF ChIP-seq from whole organism (ENCLB162AJZ)

description:
https://www.encodeproject.org/experiments/ENCSR522KTT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dysf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522KTT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR361NFK
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB162AJZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: not collected

value: ENCBS125PLA at ENCODE; https://www.encodeproject.org/ENCBS125PLA/


title: TF ChIP-seq from whole organism (ENCLB229ZDL)

description:
https://www.encodeproject.org/experiments/ENCSR522KTT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dysf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR522KTT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR361NFK
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB229ZDL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS767PAF at ENCODE; https://www.encodeproject.org/ENCBS767PAF/


title: TF ChIP-seq from whole organism (ENCLB179PBC)

description:
https://www.encodeproject.org/experiments/ENCSR524LOH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ravus-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR524LOH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR679UNL
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB179PBC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Ravus-GFP embryo (0-24 hours) insertion targeting D. melanogaster Ravus

value: Ravus

value: 0-24 hour

value: ENCBS511BYH at ENCODE; https://www.encodeproject.org/ENCBS511BYH/


title: TF ChIP-seq from whole organism (ENCLB471QFI)

description:
https://www.encodeproject.org/experiments/ENCSR524LOH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ravus-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR524LOH
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR679UNL
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB471QFI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS013UBT at ENCODE; https://www.encodeproject.org/ENCBS013UBT/


title: ChIPseq CEBPA IS15 48 ChIP Rep 1

description: ChIP-seq

value: B-cells


title: TF ChIP-seq from whole organism (ENCLB442TUU)

description:
https://www.encodeproject.org/experiments/ENCSR521RVI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3726-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR521RVI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR190GMM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB442TUU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG3726-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG3726

value: ENCBS131SWA at ENCODE; https://www.encodeproject.org/ENCBS131SWA/


title: TF ChIP-seq from whole organism (ENCLB913JCQ)

description:
https://www.encodeproject.org/experiments/ENCSR521RVI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3726-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR521RVI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR190GMM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB913JCQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS103PEN at ENCODE; https://www.encodeproject.org/ENCBS103PEN/


title: Control ChIP-seq from whole organism (ENCLB510UYX)

description:
https://www.encodeproject.org/experiments/ENCSR838RIX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing unc-4-eGFP fusion proteins.
experiment encode accession: ENCSR838RIX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB510UYX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain unc-4-GFP embryo (6-18 hours) insertion targeting D. melanogaster unc-4

value: whole organism

value: ENCBS922UTY at ENCODE; https://www.encodeproject.org/ENCBS922UTY/


title: TF ChIP-seq from whole organism (ENCLB507RCA)

description:
https://www.encodeproject.org/experiments/ENCSR521RVI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3726-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR521RVI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR190GMM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB507RCA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS302NGG at ENCODE; https://www.encodeproject.org/ENCBS302NGG/


title: Control ChIP-seq from whole organism (ENCLB361WSY)

description:
https://www.encodeproject.org/experiments/ENCSR518MOD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing HLH3B-eGFP fusion proteins.
experiment encode accession: ENCSR518MOD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB361WSY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HLH3B-GFP embryo (8-24 hours) insertion targeting D. melanogaster HLH3B

value: not applicable

value: not collected

value: ENCBS804KVP at ENCODE; https://www.encodeproject.org/ENCBS804KVP/


title: TF ChIP-seq from whole organism (ENCLB907OSZ)

description:
https://www.encodeproject.org/experiments/ENCSR528YUT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9215-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR528YUT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR141TJV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB907OSZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: ENCBS498NPF at ENCODE; https://www.encodeproject.org/ENCBS498NPF/


title: Control ChIP-seq from whole organism (ENCLB539VVH)

description:
https://www.encodeproject.org/experiments/ENCSR535RLJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11696-eGFP fusion proteins.
experiment encode accession: ENCSR535RLJ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB539VVH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11696-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG11696

value: Kevin White

value: ENCBS203AFJ at ENCODE; https://www.encodeproject.org/ENCBS203AFJ/


title: TF ChIP-seq from whole organism (ENCLB980EKT)

description:
https://www.encodeproject.org/experiments/ENCSR832AOR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Drgx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR832AOR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR482HOH
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB980EKT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Drgx-GFP embryo (1 day) insertion targeting D. melanogaster Drgx

value: Drgx

value: 1 day

value: ENCBS610CAQ at ENCODE; https://www.encodeproject.org/ENCBS610CAQ/


title: TF ChIP-seq from whole organism (ENCLB611VNN)

description:
https://www.encodeproject.org/experiments/ENCSR532EVV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Dbx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR532EVV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR430XGH
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB611VNN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Dbx

value: ENCBS571FJS at ENCODE; https://www.encodeproject.org/ENCBS571FJS/


title: TF ChIP-seq from whole organism (ENCLB402EUA)

description:
https://www.encodeproject.org/experiments/ENCSR832AOR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Drgx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR832AOR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR482HOH
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB402EUA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS673JXJ at ENCODE; https://www.encodeproject.org/ENCBS673JXJ/


title: TF ChIP-seq from whole organism (ENCLB946KNG)

description:
https://www.encodeproject.org/experiments/ENCSR512TAI/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11456-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR512TAI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR010CSQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB946KNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11456-GFP embryo (0-18 hours) insertion targeting D. melanogaster CG11456

value: whole organisms

value: 0-18 hour

value: ENCBS214AAS at ENCODE; https://www.encodeproject.org/ENCBS214AAS/


title: TF ChIP-seq from whole organism (ENCLB501NAW)

description:
https://www.encodeproject.org/experiments/ENCSR512TAI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11456-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR512TAI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR010CSQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB501NAW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: ENCBS703OQR at ENCODE; https://www.encodeproject.org/ENCBS703OQR/


title: TF ChIP-seq from whole organism (ENCLB061MUQ)

description:
https://www.encodeproject.org/experiments/ENCSR512TAI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11456-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR512TAI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR010CSQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB061MUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: ENCBS163UON at ENCODE; https://www.encodeproject.org/ENCBS163UON/


title: TF ChIP-seq from whole organism (ENCLB962AVW)

description:
https://www.encodeproject.org/experiments/ENCSR509KUN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4496-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR509KUN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR340OGY
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB962AVW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG4496-GFP pupa (unknown stages) insertion targeting D. melanogaster CG4496

value: pupa

value: unknown stage

value: Kevin White

value: ENCBS754QLZ at ENCODE; https://www.encodeproject.org/ENCBS754QLZ/


title: TF ChIP-seq from whole organism (ENCLB441ZYR)

description:
https://www.encodeproject.org/experiments/ENCSR509KUN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4496-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR509KUN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR340OGY
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB441ZYR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS709JMG at ENCODE; https://www.encodeproject.org/ENCBS709JMG/


title: Control ChIP-seq from whole organism (ENCLB443YYV)

description:
https://www.encodeproject.org/experiments/ENCSR994IHY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Doc2-eGFP fusion proteins.
experiment encode accession: ENCSR994IHY
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB443YYV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Doc2-GFP embryo (0-18 hours) insertion targeting D. melanogaster Doc2

value: ENCBS408MTY at ENCODE; https://www.encodeproject.org/ENCBS408MTY/


title: Control ChIP-seq from whole organism (ENCLB861YIO)

description:
https://www.encodeproject.org/experiments/ENCSR822MKD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ken-eGFP fusion proteins.
experiment encode accession: ENCSR822MKD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB861YIO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ken-GFP embryo (0-24 hours) insertion targeting D. melanogaster ken

value: whole organism

value: 0-24 hour

value: ENCBS944QXM at ENCODE; https://www.encodeproject.org/ENCBS944QXM/


title: TF ChIP-seq from whole organism (ENCLB432PRJ)

description:
https://www.encodeproject.org/experiments/ENCSR505DOL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10348-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR505DOL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR267POM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB432PRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10348-GFP pupa (2 days) insertion targeting D. melanogaster CG10348

value: whole organisms

value: 2 day

value: ENCBS998UXS at ENCODE; https://www.encodeproject.org/ENCBS998UXS/


title: Control ChIP-seq from whole organism (ENCLB208REA)

description:
https://www.encodeproject.org/experiments/ENCSR507SLF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Oaz-eGFP fusion proteins.
experiment encode accession: ENCSR507SLF
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB208REA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Oaz-GFP embryo (0-24 hours) insertion targeting D. melanogaster Oaz

value: not applicable

value: not collected

value: ENCBS328DML at ENCODE; https://www.encodeproject.org/ENCBS328DML/


title: TF ChIP-seq from whole organism (ENCLB648YPK)

description:
https://www.encodeproject.org/experiments/ENCSR509KUN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4496-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR509KUN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR340OGY
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB648YPK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White, UChicago

value: ENCBS387SAT at ENCODE; https://www.encodeproject.org/ENCBS387SAT/


title: Control ChIP-seq from whole organism (ENCLB020GYQ)

description:
https://www.encodeproject.org/experiments/ENCSR504VLT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1024-eGFP fusion proteins.
experiment encode accession: ENCSR504VLT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB020GYQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1024-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG1024

value: embryonic

value: ENCBS420VYP at ENCODE; https://www.encodeproject.org/ENCBS420VYP/


title: Control ChIP-seq from whole organism (ENCLB249PNL)

description:
https://www.encodeproject.org/experiments/ENCSR503KUN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Rx-eGFP fusion proteins.
experiment encode accession: ENCSR503KUN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB249PNL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Rx-GFP embryo (0-24 hours) insertion targeting D. melanogaster Rx

value: Kevin White

value: ENCBS019ZSI at ENCODE; https://www.encodeproject.org/ENCBS019ZSI/


title: TF ChIP-seq from whole organism (ENCLB046HPK)

description:
https://www.encodeproject.org/experiments/ENCSR987LDU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6175-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR987LDU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684BMF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB046HPK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6175-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG6175

value: ENCBS854SPA at ENCODE; https://www.encodeproject.org/ENCBS854SPA/


title: Control ChIP-seq from whole organism (ENCLB467GGU)

description:
https://www.encodeproject.org/experiments/ENCSR819KEO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tna-eGFP fusion proteins.
experiment encode accession: ENCSR819KEO
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB467GGU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain tna-GFP embryo (0-24 hours) insertion targeting D. melanogaster tna

value: ENCBS689URT at ENCODE; https://www.encodeproject.org/ENCBS689URT/


title: TF ChIP-seq from whole organism (ENCLB385OOH)

description:
https://www.encodeproject.org/experiments/ENCSR992BYJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ada2b-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR992BYJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860DSL
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB385OOH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Ada2b-GFP embryo (0-18 hours) insertion targeting D. melanogaster Ada2b

value: whole organism

value: 0-18 hour

value: ENCBS666SBX at ENCODE; https://www.encodeproject.org/ENCBS666SBX/


title: TF ChIP-seq from whole organism (ENCLB634TAL)

description:
https://www.encodeproject.org/experiments/ENCSR987LDU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6175-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR987LDU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684BMF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB634TAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: 0-24 hour

value: ENCBS970EWQ at ENCODE; https://www.encodeproject.org/ENCBS970EWQ/


title: TF ChIP-seq from whole organism (ENCLB791SWQ)

description:
https://www.encodeproject.org/experiments/ENCSR505DOL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10348-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR505DOL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR267POM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB791SWQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: pupa

value: 2 day

value: ENCBS329TKJ at ENCODE; https://www.encodeproject.org/ENCBS329TKJ/


title: TF ChIP-seq from whole organism (ENCLB030ZQE)

description:
https://www.encodeproject.org/experiments/ENCSR987LDU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6175-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR987LDU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR684BMF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB030ZQE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: Kevin White, UChicago

value: ENCBS740HET at ENCODE; https://www.encodeproject.org/ENCBS740HET/


title: TF ChIP-seq from whole organism (ENCLB253HCW)

description:
https://www.encodeproject.org/experiments/ENCSR496WIW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5953-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR496WIW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR386YWV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB253HCW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG5953-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG5953

value: embryonic

value: Kevin White

value: ENCBS720KWL at ENCODE; https://www.encodeproject.org/ENCBS720KWL/


title: TF ChIP-seq from whole organism (ENCLB764AZF)

description:
https://www.encodeproject.org/experiments/ENCSR496WIW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG5953-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR496WIW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR386YWV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB764AZF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS859IPE at ENCODE; https://www.encodeproject.org/ENCBS859IPE/


title: TF ChIP-seq from whole organism (ENCLB474XQK)

description:
https://www.encodeproject.org/experiments/ENCSR502VRR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing hkb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR502VRR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR121JSG
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB474XQK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain hkb-GFP embryo (0-24 hours) insertion targeting D. melanogaster hkb

value: hkb

value: whole organism

value: ENCBS640WQG at ENCODE; https://www.encodeproject.org/ENCBS640WQG/


title: TF ChIP-seq from whole organism (ENCLB095WRJ)

description:
https://www.encodeproject.org/experiments/ENCSR817ZOL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mrtf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR817ZOL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR542DMG
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB095WRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Mrtf-GFP embryo (0-24 hours) insertion targeting D. melanogaster Mrtf

value: Mrtf

value: whole organisms

value: ENCBS413HZQ at ENCODE; https://www.encodeproject.org/ENCBS413HZQ/


title: TF ChIP-seq from whole organism (ENCLB720IWO)

description:
https://www.encodeproject.org/experiments/ENCSR817ZOL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mrtf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR817ZOL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR542DMG
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB720IWO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: 0-24 hour

value: ENCBS101HCB at ENCODE; https://www.encodeproject.org/ENCBS101HCB/


title: Control ChIP-seq from whole organism (ENCLB726PBU)

description:
https://www.encodeproject.org/experiments/ENCSR817QNU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Gsc-eGFP fusion proteins.
experiment encode accession: ENCSR817QNU
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB726PBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Gsc-GFP embryo (0-24 hours) insertion targeting D. melanogaster Gsc

value: ENCBS428YTM at ENCODE; https://www.encodeproject.org/ENCBS428YTM/


title: Control ChIP-seq from whole organism (ENCLB009AOO)

description:
https://www.encodeproject.org/experiments/ENCSR984TTC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing eg-eGFP fusion proteins.
experiment encode accession: ENCSR984TTC
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB009AOO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain eg-GFP prepupa (2 days) insertion targeting D. melanogaster eg

value: not collected

value: prepupa

value: 2 day

value: ENCBS925ZPZ at ENCODE; https://www.encodeproject.org/ENCBS925ZPZ/


title: TF ChIP-seq from whole organism (ENCLB425YUV)

description:
https://www.encodeproject.org/experiments/ENCSR502VRR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing hkb-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR502VRR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR121JSG
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB425YUV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS864SEL at ENCODE; https://www.encodeproject.org/ENCBS864SEL/


title: TF ChIP-seq from whole organism (ENCLB601YSM)

description:
https://www.encodeproject.org/experiments/ENCSR817ZOL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mrtf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR817ZOL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR542DMG
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB601YSM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS215RQZ at ENCODE; https://www.encodeproject.org/ENCBS215RQZ/


title: TF ChIP-seq from whole organism (ENCLB321RVC)

description:
https://www.encodeproject.org/experiments/ENCSR489NTY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11696-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR489NTY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR535RLJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB321RVC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11696-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG11696

value: ENCBS029DXC at ENCODE; https://www.encodeproject.org/ENCBS029DXC/


title: TF ChIP-seq from whole organism (ENCLB224MTM)

description:
https://www.encodeproject.org/experiments/ENCSR981TIE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ken-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR981TIE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR822MKD
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB224MTM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ken

value: whole organisms

value: ENCBS175BHC at ENCODE; https://www.encodeproject.org/ENCBS175BHC/


title: TF ChIP-seq from whole organism (ENCLB079AIY)

description:
https://www.encodeproject.org/experiments/ENCSR811NLX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG42726-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR811NLX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR730IQA
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB079AIY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG42726-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG42726

value: not applicable

value: 0-24 hour

value: ENCBS767BAP at ENCODE; https://www.encodeproject.org/ENCBS767BAP/


title: TF ChIP-seq from whole organism (ENCLB105KDM)

description:
https://www.encodeproject.org/experiments/ENCSR811NLX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG42726-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR811NLX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR730IQA
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB105KDM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS086QEZ at ENCODE; https://www.encodeproject.org/ENCBS086QEZ/


title: TF ChIP-seq from whole organism (ENCLB538ERL)

description:
https://www.encodeproject.org/experiments/ENCSR489NTY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11696-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR489NTY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR535RLJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB538ERL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS150IFA at ENCODE; https://www.encodeproject.org/ENCBS150IFA/


title: TF ChIP-seq from whole organism (ENCLB054HEF)

description:
https://www.encodeproject.org/experiments/ENCSR992BYJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Ada2b-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR992BYJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR860DSL
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB054HEF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: 0-18 hour

value: ENCBS976JZF at ENCODE; https://www.encodeproject.org/ENCBS976JZF/


title: TF ChIP-seq from whole organism (ENCLB833STR)

description:
https://www.encodeproject.org/experiments/ENCSR981GRF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing unc-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR981GRF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR838RIX
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB833STR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain unc-4-GFP embryo (6-18 hours) insertion targeting D. melanogaster unc-4

value: embryonic

value: Kevin White, UChicago

value: ENCBS002CQZ at ENCODE; https://www.encodeproject.org/ENCBS002CQZ/


title: TF ChIP-seq from whole organism (ENCLB293PKR)

description:
https://www.encodeproject.org/experiments/ENCSR809MZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7963-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR809MZQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR301XFQ
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB293PKR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7963-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG7963

value: whole organism

value: Kevin White

value: ENCBS445FAB at ENCODE; https://www.encodeproject.org/ENCBS445FAB/


title: TF ChIP-seq from whole organism (ENCLB871UUL)

description:
https://www.encodeproject.org/experiments/ENCSR981GRF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing unc-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR981GRF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR838RIX
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB871UUL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS035CDD at ENCODE; https://www.encodeproject.org/ENCBS035CDD/


title: TF ChIP-seq from whole organism (ENCLB252FXB)

description:
https://www.encodeproject.org/experiments/ENCSR809MZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7963-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR809MZQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR301XFQ
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB252FXB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS112ZDL at ENCODE; https://www.encodeproject.org/ENCBS112ZDL/


title: Control ChIP-seq from whole organism (ENCLB652WZF)

description:
https://www.encodeproject.org/experiments/ENCSR482HOH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Drgx-eGFP fusion proteins.
experiment encode accession: ENCSR482HOH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB652WZF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Drgx-GFP embryo (1 day) insertion targeting D. melanogaster Drgx

value: not applicable

value: 1 day

value: ENCBS794UPG at ENCODE; https://www.encodeproject.org/ENCBS794UPG/


title: TF ChIP-seq from whole organism (ENCLB866GON)

description:
https://www.encodeproject.org/experiments/ENCSR809MZQ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7963-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR809MZQ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR301XFQ
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB866GON
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: 0-24 hour

value: ENCBS182OSB at ENCODE; https://www.encodeproject.org/ENCBS182OSB/


title: Control ChIP-seq from whole organism (ENCLB716EKV)

description:
https://www.encodeproject.org/experiments/ENCSR477BDH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11085-eGFP fusion proteins.
experiment encode accession: ENCSR477BDH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB716EKV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11085-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG11085

value: ENCBS874RLI at ENCODE; https://www.encodeproject.org/ENCBS874RLI/


title: TF ChIP-seq from whole organism (ENCLB064CNS)

description:
https://www.encodeproject.org/experiments/ENCSR676IZR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Aef1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR676IZR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR922BGB
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB064CNS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Aef1-GFP embryo (0-24 hours) insertion targeting D. melanogaster Aef1

value: ENCBS105ZPW at ENCODE; https://www.encodeproject.org/ENCBS105ZPW/


title: TF ChIP-seq from whole organism (ENCLB380THY)

description:
https://www.encodeproject.org/experiments/ENCSR677VHK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ci-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR677VHK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR764BBX
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB380THY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ci-GFP embryo (0-24 hours) insertion targeting D. melanogaster ci

value: ci

value: embryonic

value: ENCBS129WRA at ENCODE; https://www.encodeproject.org/ENCBS129WRA/


title: TF ChIP-seq from whole organism (ENCLB673IEH)

description:
https://www.encodeproject.org/experiments/ENCSR677VHK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ci-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR677VHK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR764BBX
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB673IEH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: ENCBS092LIT at ENCODE; https://www.encodeproject.org/ENCBS092LIT/


title: TF ChIP-seq from whole organism (ENCLB106SSA)

description:
https://www.encodeproject.org/experiments/ENCSR676IZR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Aef1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR676IZR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR922BGB
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB106SSA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White

value: ENCBS564MSA at ENCODE; https://www.encodeproject.org/ENCBS564MSA/


title: TF ChIP-seq from whole organism (ENCLB917KUI)

description:
https://www.encodeproject.org/experiments/ENCSR676IZR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Aef1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR676IZR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR922BGB
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB917KUI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS657EOM at ENCODE; https://www.encodeproject.org/ENCBS657EOM/


title: TF ChIP-seq from whole organism (ENCLB053SJM)

description:
https://www.encodeproject.org/experiments/ENCSR673HOX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3847-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673HOX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR424LMY
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB053SJM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG3847-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG3847

value: not applicable

value: ENCBS242PFC at ENCODE; https://www.encodeproject.org/ENCBS242PFC/


title: TF ChIP-seq from whole organism (ENCLB516OWY)

description:
https://www.encodeproject.org/experiments/ENCSR806BBT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ap-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR806BBT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR164ZUD
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB516OWY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ap-GFP embryo (0-24 hours) insertion targeting D. melanogaster ap

value: ap

value: not collected

value: ENCBS413UXX at ENCODE; https://www.encodeproject.org/ENCBS413UXX/


title: TF ChIP-seq from whole organism (ENCLB505JIF)

description:
https://www.encodeproject.org/experiments/ENCSR473WNJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ham-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR473WNJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR573BGT
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB505JIF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ham-GFP embryo (0-24 hours) insertion targeting D. melanogaster ham

value: ham

value: 0-24 hour

value: ENCBS395BIG at ENCODE; https://www.encodeproject.org/ENCBS395BIG/


title: TF ChIP-seq from whole organism (ENCLB625SBM)

description:
https://www.encodeproject.org/experiments/ENCSR473DHG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing al-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR473DHG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR865FHW
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB625SBM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain al-GFP embryo (0-24 hours) insertion targeting D. melanogaster al

value: al

value: embryonic

value: ENCBS349LRZ at ENCODE; https://www.encodeproject.org/ENCBS349LRZ/


title: TF ChIP-seq from whole organism (ENCLB683GTQ)

description:
https://www.encodeproject.org/experiments/ENCSR473DHG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing al-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR473DHG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR865FHW
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB683GTQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: ENCBS366LFN at ENCODE; https://www.encodeproject.org/ENCBS366LFN/


title: TF ChIP-seq from whole organism (ENCLB140ZLU)

description:
https://www.encodeproject.org/experiments/ENCSR973ITX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing z-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973ITX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR297WYF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB140ZLU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain z-GFP embryo (0-24 hours) insertion targeting D. melanogaster z

value: z

value: Kevin White

value: ENCBS795ZUZ at ENCODE; https://www.encodeproject.org/ENCBS795ZUZ/


title: TF ChIP-seq from whole organism (ENCLB655LZB)

description:
https://www.encodeproject.org/experiments/ENCSR973ITX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing z-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973ITX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR297WYF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB655LZB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: ENCBS928XUY at ENCODE; https://www.encodeproject.org/ENCBS928XUY/


title: TF ChIP-seq from whole organism (ENCLB595AHI)

description:
https://www.encodeproject.org/experiments/ENCSR981TIE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ken-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR981TIE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR822MKD
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB595AHI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ken-GFP embryo (0-24 hours) insertion targeting D. melanogaster ken

value: ken

value: not collected

value: ENCBS677FNH at ENCODE; https://www.encodeproject.org/ENCBS677FNH/


title: Control ChIP-seq from whole organism (ENCLB103TWT)

description:
https://www.encodeproject.org/experiments/ENCSR805BQT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG32532-eGFP fusion proteins.
experiment encode accession: ENCSR805BQT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB103TWT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG32532-GFP embryo (8-24 hours) insertion targeting D. melanogaster CG32532

value: ENCBS872HGS at ENCODE; https://www.encodeproject.org/ENCBS872HGS/


title: TF ChIP-seq from whole organism (ENCLB129WJU)

description:
https://www.encodeproject.org/experiments/ENCSR973YDX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15336-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973YDX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR947PSR
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB129WJU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15336-GFP prepupa (2 days) insertion targeting D. melanogaster CG15336

value: prepupa

value: 2 day

value: ENCBS823CRL at ENCODE; https://www.encodeproject.org/ENCBS823CRL/


title: Control ChIP-seq from whole organism (ENCLB801RFS)

description:
https://www.encodeproject.org/experiments/ENCSR678BBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Adf1-eGFP fusion proteins.
experiment encode accession: ENCSR678BBJ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB801RFS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Adf1-GFP embryo (0-24 hours) insertion targeting D. melanogaster Adf1

value: embryonic

value: 0-24 hour

value: ENCBS100TMC at ENCODE; https://www.encodeproject.org/ENCBS100TMC/


title: TF ChIP-seq from whole organism (ENCLB550XUH)

description:
https://www.encodeproject.org/experiments/ENCSR973ITX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing z-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973ITX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR297WYF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB550XUH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White, UChicago

value: ENCBS276VWO at ENCODE; https://www.encodeproject.org/ENCBS276VWO/


title: TF ChIP-seq from whole organism (ENCLB806SJH)

description:
https://www.encodeproject.org/experiments/ENCSR973YDX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG15336-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973YDX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR947PSR
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB806SJH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White

value: ENCBS776AMP at ENCODE; https://www.encodeproject.org/ENCBS776AMP/


title: TF ChIP-seq from whole organism (ENCLB002FWE)

description:
https://www.encodeproject.org/experiments/ENCSR804DDF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Poxn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR804DDF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR186QCV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB002FWE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Poxn-GFP embryo (0-24 hours) insertion targeting D. melanogaster Poxn

value: Poxn

value: whole organisms

value: not applicable

value: ENCBS345QWL at ENCODE; https://www.encodeproject.org/ENCBS345QWL/


title: TF ChIP-seq from whole organism (ENCLB388VHI)

description:
https://www.encodeproject.org/experiments/ENCSR677VHK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ci-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR677VHK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR764BBX
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB388VHI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ci

value: not collected

value: ENCBS669MQG at ENCODE; https://www.encodeproject.org/ENCBS669MQG/


title: TF ChIP-seq from whole organism (ENCLB216EXA)

description:
https://www.encodeproject.org/experiments/ENCSR673HOX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3847-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR673HOX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR424LMY
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB216EXA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS415YAB at ENCODE; https://www.encodeproject.org/ENCBS415YAB/


title: TF ChIP-seq from whole organism (ENCLB519TQV)

description:
https://www.encodeproject.org/experiments/ENCSR973FOX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing otp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973FOX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR724YNQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB519TQV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain otp-GFP embryo (0-24 hours) insertion targeting D. melanogaster otp

value: otp

value: ENCBS215QZQ at ENCODE; https://www.encodeproject.org/ENCBS215QZQ/


title: TF ChIP-seq from whole organism (ENCLB350MTD)

description:
https://www.encodeproject.org/experiments/ENCSR473WNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ham-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR473WNJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR573BGT
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB350MTD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ham

value: embryonic

value: 0-24 hour

value: ENCBS217YWM at ENCODE; https://www.encodeproject.org/ENCBS217YWM/


title: Control ChIP-seq from whole organism (ENCLB551WJO)

description:
https://www.encodeproject.org/experiments/ENCSR666BYH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing crol-eGFP fusion proteins.
experiment encode accession: ENCSR666BYH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB551WJO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain crol-GFP embryo (0-24 hours) insertion targeting D. melanogaster crol

value: whole organism

value: Kevin White, UChicago

value: ENCBS956BHD at ENCODE; https://www.encodeproject.org/ENCBS956BHD/


title: TF ChIP-seq from whole organism (ENCLB724XSB)

description:
https://www.encodeproject.org/experiments/ENCSR668AXV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Oaz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668AXV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR507SLF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB724XSB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Oaz-GFP embryo (0-24 hours) insertion targeting D. melanogaster Oaz

value: Oaz

value: Kevin White

value: ENCBS184KUY at ENCODE; https://www.encodeproject.org/ENCBS184KUY/


title: Control ChIP-seq from whole organism (ENCLB213DMM)

description:
https://www.encodeproject.org/experiments/ENCSR666DSG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ssp-eGFP fusion proteins.
experiment encode accession: ENCSR666DSG
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB213DMM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ssp-GFP embryo (0-24 hours) insertion targeting D. melanogaster ssp

value: whole organisms

value: not applicable

value: ENCBS825OJM at ENCODE; https://www.encodeproject.org/ENCBS825OJM/


title: TF ChIP-seq from whole organism (ENCLB834YVG)

description:
https://www.encodeproject.org/experiments/ENCSR668AXV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Oaz-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668AXV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR507SLF
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB834YVG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS169SBH at ENCODE; https://www.encodeproject.org/ENCBS169SBH/


title: TF ChIP-seq from whole organism (ENCLB945QDK)

description:
https://www.encodeproject.org/experiments/ENCSR973FOX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing otp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973FOX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR724YNQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB945QDK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: otp

value: ENCBS354HUC at ENCODE; https://www.encodeproject.org/ENCBS354HUC/


title: Control ChIP-seq from whole organism (ENCLB648QKY)

description:
https://www.encodeproject.org/experiments/ENCSR797VOK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ken-eGFP fusion proteins.
experiment encode accession: ENCSR797VOK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB648QKY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS590EOT at ENCODE; https://www.encodeproject.org/ENCBS590EOT/


title: Control ChIP-seq from whole organism (ENCLB488RJF)

description:
https://www.encodeproject.org/experiments/ENCSR797EQD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ato-eGFP fusion proteins.
experiment encode accession: ENCSR797EQD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB488RJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ato-GFP embryo (0-18 hours) insertion targeting D. melanogaster ato

value: embryonic

value: 0-18 hour

value: ENCBS013XPA at ENCODE; https://www.encodeproject.org/ENCBS013XPA/


title: TF ChIP-seq from whole organism (ENCLB261NRP)

description:
https://www.encodeproject.org/experiments/ENCSR797NFP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32772-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR797NFP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR947RSM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB261NRP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG32772-GFP embryo (0-24 hours) insertion targeting D. melanogaster CG32772

value: whole organism

value: 0-24 hour

value: ENCBS416OKC at ENCODE; https://www.encodeproject.org/ENCBS416OKC/


title: TF ChIP-seq from whole organism (ENCLB088FUX)

description:
https://www.encodeproject.org/experiments/ENCSR797NFP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG32772-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR797NFP
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR947RSM
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB088FUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White, UChicago

value: ENCBS872XNI at ENCODE; https://www.encodeproject.org/ENCBS872XNI/


title: Control ChIP-seq from whole organism (ENCLB588IOS)

description:
https://www.encodeproject.org/experiments/ENCSR465AXK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11294-eGFP fusion proteins.
experiment encode accession: ENCSR465AXK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB588IOS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11294-GFP prepupa (1 day) insertion targeting D. melanogaster CG11294

value: prepupa

value: 1 day

value: Kevin White

value: ENCBS512ELA at ENCODE; https://www.encodeproject.org/ENCBS512ELA/


title: Control ChIP-seq from whole organism (ENCLB706JVQ)

description:
https://www.encodeproject.org/experiments/ENCSR465QFF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Doc3-eGFP fusion proteins.
experiment encode accession: ENCSR465QFF
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB706JVQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Doc3-GFP embryo (0-24 hours) insertion targeting D. melanogaster Doc3

value: whole organisms

value: not applicable

value: not collected

value: ENCBS230CUA at ENCODE; https://www.encodeproject.org/ENCBS230CUA/


title: TF ChIP-seq from whole organism (ENCLB434ADW)

description:
https://www.encodeproject.org/experiments/ENCSR471KCF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Rfx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR471KCF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR194MGU
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB434ADW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Rfx-GFP embryo (0-24 hours) insertion targeting D. melanogaster Rfx

value: Rfx

value: ENCBS363AHI at ENCODE; https://www.encodeproject.org/ENCBS363AHI/


title: Control ChIP-seq from whole organism (ENCLB617FVV)

description:
https://www.encodeproject.org/experiments/ENCSR465AXK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11294-eGFP fusion proteins.
experiment encode accession: ENCSR465AXK
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB617FVV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS579FFU at ENCODE; https://www.encodeproject.org/ENCBS579FFU/


title: TF ChIP-seq from whole organism (ENCLB708VCB)

description:
https://www.encodeproject.org/experiments/ENCSR471KCF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Rfx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR471KCF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR194MGU
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB708VCB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: ENCBS219DEF at ENCODE; https://www.encodeproject.org/ENCBS219DEF/


title: Control ChIP-seq from whole organism (ENCLB193SVM)

description:
https://www.encodeproject.org/experiments/ENCSR464NKQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sisA-eGFP fusion proteins.
experiment encode accession: ENCSR464NKQ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB193SVM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sisA-GFP embryo (0-18 hours) insertion targeting D. melanogaster sisA

value: whole organism

value: 0-18 hour

value: ENCBS764PCA at ENCODE; https://www.encodeproject.org/ENCBS764PCA/


title: TF ChIP-seq from whole organism (ENCLB817EUX)

description:
https://www.encodeproject.org/experiments/ENCSR804DDF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Poxn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR804DDF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR186QCV
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB817EUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Poxn

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS794INN at ENCODE; https://www.encodeproject.org/ENCBS794INN/


title: TF ChIP-seq from whole organism (ENCLB502WZO)

description:
https://www.encodeproject.org/experiments/ENCSR806BBT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ap-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR806BBT
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR164ZUD
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB502WZO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ap-GFP embryo (0-24 hours) insertion targeting D. melanogaster ap

value: ap

value: Kevin White

value: ENCBS354TTI at ENCODE; https://www.encodeproject.org/ENCBS354TTI/


title: TF ChIP-seq from whole organism (ENCLB225YKX)

description:
https://www.encodeproject.org/experiments/ENCSR967QYJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6163-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR967QYJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR009STJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB225YKX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6163-GFP prepupa (unknown stages) insertion targeting D. melanogaster CG6163

value: whole organisms

value: not applicable

value: not collected

value: prepupa

value: unknown stage

value: ENCBS983MRL at ENCODE; https://www.encodeproject.org/ENCBS983MRL/


title: TF ChIP-seq from whole organism (ENCLB738FDE)

description:
https://www.encodeproject.org/experiments/ENCSR458OPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR458OPJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR303WIW
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB738FDE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sr-GFP embryo (8-24 hours) insertion targeting D. melanogaster sr

value: sr

value: embryonic

value: ENCBS780ULQ at ENCODE; https://www.encodeproject.org/ENCBS780ULQ/


title: TF ChIP-seq from whole organism (ENCLB695QBS)

description:
https://www.encodeproject.org/experiments/ENCSR967QYJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6163-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR967QYJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR009STJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB695QBS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS352YNG at ENCODE; https://www.encodeproject.org/ENCBS352YNG/


title: TF ChIP-seq from whole organism (ENCLB926CGD)

description:
https://www.encodeproject.org/experiments/ENCSR458OPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR458OPJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR303WIW
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB926CGD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS396YHQ at ENCODE; https://www.encodeproject.org/ENCBS396YHQ/


title: TF ChIP-seq from whole organism (ENCLB373SSH)

description:
https://www.encodeproject.org/experiments/ENCSR458OPJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing sr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR458OPJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR303WIW
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB373SSH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White, UChicago

value: ENCBS323PAA at ENCODE; https://www.encodeproject.org/ENCBS323PAA/


title: Control ChIP-seq from whole organism (ENCLB192PWZ)

description:
https://www.encodeproject.org/experiments/ENCSR966CJP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing ara-eGFP fusion proteins.
experiment encode accession: ENCSR966CJP
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB192PWZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ara-GFP embryo (0-24 hours) insertion targeting D. melanogaster ara

value: 0-24 hour

value: ENCBS185OHN at ENCODE; https://www.encodeproject.org/ENCBS185OHN/


title: TF ChIP-seq from whole organism (ENCLB453DMJ)

description:
https://www.encodeproject.org/experiments/ENCSR967QYJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6163-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR967QYJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR009STJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB453DMJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White

value: ENCBS439UYK at ENCODE; https://www.encodeproject.org/ENCBS439UYK/


title: TF ChIP-seq from whole organism (ENCLB260XDV)

description:
https://www.encodeproject.org/experiments/ENCSR965LOI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG16779-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR965LOI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR612KXA
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB260XDV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG16779-GFP embryo (8-24 hours) insertion targeting D. melanogaster CG16779

value: whole organisms

value: not applicable

value: ENCBS570CRO at ENCODE; https://www.encodeproject.org/ENCBS570CRO/


title: TF ChIP-seq from whole organism (ENCLB948IRM)

description:
https://www.encodeproject.org/experiments/ENCSR965LOI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG16779-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR965LOI
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR612KXA
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB948IRM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS250SZO at ENCODE; https://www.encodeproject.org/ENCBS250SZO/


title: TF ChIP-seq from whole organism (ENCLB092TWM)

description:
https://www.encodeproject.org/experiments/ENCSR973FOX/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing otp-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR973FOX
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR724YNQ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB092TWM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: otp

value: ENCBS501IIZ at ENCODE; https://www.encodeproject.org/ENCBS501IIZ/


title: Control ChIP-seq from whole organism (ENCLB885MJI)

description:
https://www.encodeproject.org/experiments/ENCSR963EIX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing pan-eGFP fusion proteins.
experiment encode accession: ENCSR963EIX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB885MJI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pan-GFP embryo (0-24 hours) insertion targeting D. melanogaster pan

value: embryonic

value: ENCBS628XWT at ENCODE; https://www.encodeproject.org/ENCBS628XWT/


title: TF ChIP-seq from whole organism (ENCLB117URN)

description:
https://www.encodeproject.org/experiments/ENCSR781HCW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG43689-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR781HCW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR874SUX
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB117URN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG43689-GFP embryo (8-24 hours) insertion targeting D. melanogaster CG43689

value: whole organism

value: ENCBS238AYC at ENCODE; https://www.encodeproject.org/ENCBS238AYC/


title: TF ChIP-seq from whole organism (ENCLB157GBT)

description:
https://www.encodeproject.org/experiments/ENCSR959LNN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bbx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR959LNN
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR409JKA
encode release date: 2022-11-23
lab: Kevin White, UChicago
library encode accession: ENCLB157GBT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bbx-GFP embryo (0-24 hours) insertion targeting D. melanogaster bbx

value: bbx

value: Kevin White, UChicago

value: ENCBS565YWT at ENCODE; https://www.encodeproject.org/ENCBS565YWT/


title: TF ChIP-seq from whole organism (ENCLB491MMY)

description:
https://www.encodeproject.org/experiments/ENCSR779XKY/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing B-H1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR779XKY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR334WBE
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB491MMY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain B-H1-GFP embryo (8-24 hours) insertion targeting D. melanogaster B-H1

value: ENCBS684ZGC at ENCODE; https://www.encodeproject.org/ENCBS684ZGC/


title: TF ChIP-seq from whole organism (ENCLB552KOV)

description:
https://www.encodeproject.org/experiments/ENCSR779XKY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing B-H1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR779XKY
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR334WBE
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB552KOV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White

value: ENCBS699VNL at ENCODE; https://www.encodeproject.org/ENCBS699VNL/


title: TF ChIP-seq from whole organism (ENCLB250EJE)

description:
https://www.encodeproject.org/experiments/ENCSR951RYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ranshi-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR951RYW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR946AOJ
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB250EJE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ranshi-GFP embryo (0-24 hours) insertion targeting D. melanogaster ranshi

value: ranshi

value: whole organisms

value: 0-24 hour

value: ENCBS006YQF at ENCODE; https://www.encodeproject.org/ENCBS006YQF/