title: Control ChIP-seq from whole organism (ENCLB418RQM)

description:
https://www.encodeproject.org/experiments/ENCSR520BTD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10631-eGFP fusion proteins.
experiment encode accession: ENCSR520BTD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB418RQM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10631-GFP prepupa at white prepupa stage insertion targeting D. melanogaster CG10631

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10631

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

tag: fly synchronization stage

value: white prepupa

value: ENCBS895RXI at ENCODE; https://www.encodeproject.org/ENCBS895RXI/


title: Control ChIP-seq from whole organism (ENCLB409OKT)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR269LRI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR269LRI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB409OKT
size range: 150-350

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain YL409 (unc-119(ed3)III; vrIs60 [pLIN-35::LIN-35:GFP:FLAG::LIN-35 3'UTR, unc-119 (+)])) mixed sex L1 larva insertion targeting C. elegans lin-35

extract_protocol: not provided

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

tag: geographic location

tag: encode accession

tag: Sex

value: pooled male and female

tag: dev stage

value: L1 larva

tag: age

tag: lab

value: Michael Snyder, Stanford

tag: source

value: CGC

tag: link

value: ENCBS034VZH at ENCODE; https://www.encodeproject.org/ENCBS034VZH/


title: TF ChIP-seq from whole organism (ENCLB490ZUQ)

description:
https://www.encodeproject.org/experiments/ENCSR846IMA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ZK337.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR846IMA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR820XTA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB490ZUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12326 (st12326(ZK337.2::TY1::EGFP::3xFLAG] I) L4 larva (47 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans klu-1

tag: antibody

value: not collected

value: L4 larva

value: 47 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS551DVC at ENCODE; https://www.encodeproject.org/ENCBS551DVC/


title: TF ChIP-seq from whole organism (ENCLB957VGU)

description:
https://www.encodeproject.org/experiments/ENCSR539RSR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing grh-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR539RSR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR627LBA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB957VGU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12208 (st12208[grh-1::TY1::EGFP::3xFLAG] I) L1 larva (6 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans grh-1

value: not applicable

value: 6 hour

value: ENCBS336BDW at ENCODE; https://www.encodeproject.org/ENCBS336BDW/


title: Control ChIP-seq from whole organism (ENCLB723IWN)

description:
https://www.encodeproject.org/experiments/ENCSR543RPD/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing madf-8-eGFP fusion proteins.
experiment encode accession: ENCSR543RPD
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB723IWN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12322 (st12322(madf-8::TY1::EGFP::3xFLAG] III) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-8

value: whole organism

value: young adult

value: 64 hour

value: ENCBS830BVO at ENCODE; https://www.encodeproject.org/ENCBS830BVO/


title: TF ChIP-seq from whole organism (ENCLB071SHM)

description:
https://www.encodeproject.org/experiments/ENCSR518MQL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hnf4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR518MQL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR986ULH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB071SHM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Hnf4-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Hnf4

value: whole organisms

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hnf4

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS917VVD at ENCODE; https://www.encodeproject.org/ENCBS917VVD/


title: Control ChIP-seq from whole organism (ENCLB388FSY)

description:
https://www.encodeproject.org/experiments/ENCSR370QTM/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR370QTM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB388FSY
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS305QBU at ENCODE; https://www.encodeproject.org/ENCBS305QBU/


title: TF ChIP-seq from whole organism (ENCLB842WFC)

description:
https://www.encodeproject.org/experiments/ENCSR846IMA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ZK337.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR846IMA
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR820XTA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB842WFC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: L4 larva

value: 47 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS013DTS at ENCODE; https://www.encodeproject.org/ENCBS013DTS/


title: Control ChIP-seq from whole organism (ENCLB655DQK)

description:
https://www.encodeproject.org/experiments/ENCSR837BBL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10565-eGFP fusion proteins.
experiment encode accession: ENCSR837BBL
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB655DQK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10565-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10565

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10565

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS487CJL at ENCODE; https://www.encodeproject.org/ENCBS487CJL/


title: Control ChIP-seq from whole organism (ENCLB706FXO)

description:
https://www.encodeproject.org/experiments/ENCSR835UJD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fu2-eGFP fusion proteins.
experiment encode accession: ENCSR835UJD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB706FXO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fu2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster prg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fu2

value: Kevin White, UChicago

value: Kevin White

value: ENCBS535MIQ at ENCODE; https://www.encodeproject.org/ENCBS535MIQ/


title: TF ChIP-seq from whole organism (ENCLB620QUJ)

description:
https://www.encodeproject.org/experiments/ENCSR539RSR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing grh-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR539RSR
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR627LBA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB620QUJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: L1 larva

value: 6 hour

value: ENCBS685WRW at ENCODE; https://www.encodeproject.org/ENCBS685WRW/


title: TF ChIP-seq from whole organism (ENCLB533FWO)

description:
https://www.encodeproject.org/experiments/ENCSR281BUM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-45-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR281BUM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR280LJC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB533FWO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12292 (st12292[ceh-45::TY1::EGFP::3xFLAG] I) late embryo (2 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-45

value: late embryonic

value: 2 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS089QCB at ENCODE; https://www.encodeproject.org/ENCBS089QCB/


title: Control ChIP-seq from whole organism (ENCLB479OVN)

description:
https://www.encodeproject.org/experiments/ENCSR280QNW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing T26A8.4-eGFP fusion proteins.
experiment encode accession: ENCSR280QNW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB479OVN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP692 (wgIs692(T26A8.4::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0035_1B01);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans T26A8.4

value: whole organism

value: whole organisms

value: L4 larva

value: 48 hour

value: L1 larva starved after bleaching

value: ENCBS975CGS at ENCODE; https://www.encodeproject.org/ENCBS975CGS/


title: TF ChIP-seq from whole organism (ENCLB250HDI)

description:
https://www.encodeproject.org/experiments/ENCSR281BUM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-45-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR281BUM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR280LJC
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB250HDI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS768RKK at ENCODE; https://www.encodeproject.org/ENCBS768RKK/


title: Control ChIP-seq from whole organism (ENCLB981XCC)

description:
https://www.encodeproject.org/experiments/ENCSR280LJC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-45-eGFP fusion proteins.
experiment encode accession: ENCSR280LJC
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB981XCC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: ENCBS577RVQ at ENCODE; https://www.encodeproject.org/ENCBS577RVQ/


title: Control ChIP-seq from whole organism (ENCLB056UGV)

description:
https://www.encodeproject.org/experiments/ENCSR537JMU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing mxl-2-eGFP fusion proteins.
experiment encode accession: ENCSR537JMU
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB056UGV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12316 (st12316(mxl-2::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mxl-2

value: ENCBS262SSH at ENCODE; https://www.encodeproject.org/ENCBS262SSH/


title: Control ChIP-seq from whole organism (ENCLB430QIV)

description:
https://www.encodeproject.org/experiments/ENCSR368HRR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR368HRR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB430QIV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL489 (unc-119(ed3) III; vrIs104 [pPIE-1::AMA-1:GFP:FLAG::PUF-5 3'UTR, unc-119 (+)]) mixed sex young adult insertion targeting C. elegans ama-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AMA-1

value: pooled male and female

value: young adult

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS945ONM at ENCODE; https://www.encodeproject.org/ENCBS945ONM/


title: Control ChIP-seq from whole organism (ENCLB485BGW)

description:
https://www.encodeproject.org/experiments/ENCSR368HRR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in YA worms.
experiment encode accession: ENCSR368HRR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-01-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB485BGW
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: ENCBS211GAN at ENCODE; https://www.encodeproject.org/ENCBS211GAN/


title: Control ChIP-seq from whole organism (ENCLB968BED)

description:
https://www.encodeproject.org/experiments/ENCSR370QTM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR370QTM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB968BED
size range: 150-350

value: L2 larva

value: CGC

value: ENCBS765IZB at ENCODE; https://www.encodeproject.org/ENCBS765IZB/


title: TF ChIP-seq from whole organism (ENCLB615ZOE)

description:
https://www.encodeproject.org/experiments/ENCSR517HVR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mes4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517HVR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR636YHR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB615ZOE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Mes4-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Mes4

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mes4

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS241TQK at ENCODE; https://www.encodeproject.org/ENCBS241TQK/


title: Control ChIP-seq from whole organism (ENCLB520UAL)

description:
https://www.encodeproject.org/experiments/ENCSR266HAP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing bed-2-eGFP fusion proteins.
experiment encode accession: ENCSR266HAP
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB520UAL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12335 (st12335[TY1::EGFP::3xFLAG::bed-2] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans bed-2

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS649USH at ENCODE; https://www.encodeproject.org/ENCBS649USH/


title: Control ChIP-seq from whole organism (ENCLB156CAE)

description:
https://www.encodeproject.org/experiments/ENCSR268WXK/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C17E4.6-eGFP fusion proteins.
experiment encode accession: ENCSR268WXK
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB156CAE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12293 (st12293[C17E4.6::TY1::EGFP::3xFLAG] I) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans C17E4.6

value: whole organism

value: whole organisms

value: 62 hour

value: ENCBS435CRI at ENCODE; https://www.encodeproject.org/ENCBS435CRI/


title: TF ChIP-seq from whole organism (ENCLB395TTR)

description:
https://www.encodeproject.org/experiments/ENCSR517HVR/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mes4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR517HVR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR636YHR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB395TTR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mes4

value: pooled male and female

value: ENCBS796NSI at ENCODE; https://www.encodeproject.org/ENCBS796NSI/


title: TF ChIP-seq from whole organism (ENCLB262MLD)

description:
https://www.encodeproject.org/experiments/ENCSR265QDO/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in L4 larva worms.
experiment encode accession: ENCSR265QDO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR510LKT
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB262MLD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP102 (unc-119(tm4063) III; wgIs102) mixed sex L4 larva insertion targeting C. elegans mep-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MEP-1

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS968JTQ at ENCODE; https://www.encodeproject.org/ENCBS968JTQ/


title: Control ChIP-seq from whole organism (ENCLB197EXE)

description:
https://www.encodeproject.org/experiments/ENCSR371FJS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing zip-11-eGFP fusion proteins.
experiment encode accession: ENCSR371FJS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB197EXE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP761 (wgIs761(zip-11::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0093_6G04);unc-119(+));unc-119 (tm4063)) L4 larva (52.5 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans zip-11

value: not collected

value: 52.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS055PUW at ENCODE; https://www.encodeproject.org/ENCBS055PUW/


title: TF ChIP-seq from whole organism (ENCLB716LWY)

description:
https://www.encodeproject.org/experiments/ENCSR264KCU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264KCU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR266HAP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB716LWY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: young adult

value: 63 hour

value: L1 larva starved after bleaching

value: ENCBS775WFT at ENCODE; https://www.encodeproject.org/ENCBS775WFT/


title: Control ChIP-seq from whole organism (ENCLB814RJP)

description:
https://www.encodeproject.org/experiments/ENCSR515BLI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing da-eGFP fusion proteins.
experiment encode accession: ENCSR515BLI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB814RJP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain da-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster da

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to da

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS570JHG at ENCODE; https://www.encodeproject.org/ENCBS570JHG/


title: TF ChIP-seq from whole organism (ENCLB870UBR)

description:
https://www.encodeproject.org/experiments/ENCSR264KCU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264KCU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR266HAP
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB870UBR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: Valerie Reinke, Yale

value: ENCBS705RWO at ENCODE; https://www.encodeproject.org/ENCBS705RWO/


title: TF ChIP-seq from whole organism (ENCLB466JWZ)

description:
https://www.encodeproject.org/experiments/ENCSR265QDO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in L4 larva worms.
experiment encode accession: ENCSR265QDO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR510LKT
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB466JWZ
size range: 150-350

value: whole organism

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS560BPO at ENCODE; https://www.encodeproject.org/ENCBS560BPO/


title: TF ChIP-seq from whole organism (ENCLB364XYS)

description:
https://www.encodeproject.org/experiments/ENCSR999ZCR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dm-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR999ZCR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR264VTB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB364XYS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dm-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Myc

value: dm

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dm

value: 0-16 hour

value: ENCBS587PJS at ENCODE; https://www.encodeproject.org/ENCBS587PJS/


title: TF ChIP-seq from whole organism (ENCLB064VFW)

description:
https://www.encodeproject.org/experiments/ENCSR265QDO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in L4 larva worms.
experiment encode accession: ENCSR265QDO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR510LKT
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB064VFW
size range: 150-350

value: pooled male and female

value: ENCBS072JPP at ENCODE; https://www.encodeproject.org/ENCBS072JPP/


title: TF ChIP-seq from whole organism (ENCLB378HWO)

description:
https://www.encodeproject.org/experiments/ENCSR518MQL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hnf4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR518MQL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR986ULH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB378HWO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hnf4

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS095RPJ at ENCODE; https://www.encodeproject.org/ENCBS095RPJ/


title: Control ChIP-seq from whole organism (ENCLB989HWX)

description:
https://www.encodeproject.org/experiments/ENCSR269LRI/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR269LRI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB989HWX
size range: 150-350

source_name: Caenorhabditis elegans strain YL409 (unc-119(ed3)III; vrIs60 [pLIN-35::LIN-35:GFP:FLAG::LIN-35 3'UTR, unc-119 (+)])) mixed sex L1 larva insertion targeting C. elegans lin-35

value: whole organism

value: L1 larva

value: unknown

value: ENCBS592MQQ at ENCODE; https://www.encodeproject.org/ENCBS592MQQ/


title: TF ChIP-seq from whole organism (ENCLB658FMC)

description:
https://www.encodeproject.org/experiments/ENCSR999ZCR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dm-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR999ZCR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR264VTB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB658FMC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: dm

value: embryonic

value: ENCBS943NDR at ENCODE; https://www.encodeproject.org/ENCBS943NDR/


title: Control ChIP-seq from whole organism (ENCLB092KXS)

description:
https://www.encodeproject.org/experiments/ENCSR259MSM/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing cebp-2-eGFP fusion proteins.
experiment encode accession: ENCSR259MSM
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB092KXS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP331 (wgIs331(C48E7.11::TY1 EGFP 3xFLAG(P000010_F04)); unc-119(+));unc-119(ed3)) young adult (64 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans cebp-2

value: whole organisms

value: not applicable

value: not collected

value: young adult

value: 64 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS246EVA at ENCODE; https://www.encodeproject.org/ENCBS246EVA/


title: TF ChIP-seq from whole organism (ENCLB665DPR)

description:
https://www.encodeproject.org/experiments/ENCSR356MVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mdt-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR356MVJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR183OHH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB665DPR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RJP4521 (rp133 (Degron::GFP::mt-29) III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mdt-29

value: L4 larva

value: 48 hour

value: ENCBS405AHJ at ENCODE; https://www.encodeproject.org/ENCBS405AHJ/


title: Control ChIP-seq from whole organism (ENCLB713CGT)

description:
https://www.encodeproject.org/experiments/ENCSR361HLQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing tab-1-eGFP fusion proteins.
experiment encode accession: ENCSR361HLQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB713CGT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP787 (wgIs787(T27A8.2::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0091_2H08);unc-119(+));unc-119 (tm4063)) midembryo (3.5 hours) using egg bleaching insertion targeting C. elegans tab-1

value: whole organism

value: midembryonic

value: 3.5 hour

value: egg bleaching

value: ENCBS972FIJ at ENCODE; https://www.encodeproject.org/ENCBS972FIJ/


title: TF ChIP-seq from whole organism (ENCLB230WYX)

description:
https://www.encodeproject.org/experiments/ENCSR365BZX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L4 larva worms.
experiment encode accession: ENCSR365BZX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR364VEB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB230WYX
size range: 150-350

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L4 larva insertion targeting C. elegans mdl-1

value: whole organisms

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS540TVY at ENCODE; https://www.encodeproject.org/ENCBS540TVY/


title: TF ChIP-seq from whole organism (ENCLB133WVG)

description:
https://www.encodeproject.org/experiments/ENCSR356MVJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing mdt-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR356MVJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR183OHH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB133WVG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: not collected

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS970BIY at ENCODE; https://www.encodeproject.org/ENCBS970BIY/


title: Control ChIP-seq from whole organism (ENCLB785OJE)

description:
https://www.encodeproject.org/experiments/ENCSR506OGY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Dip3-eGFP fusion proteins.
experiment encode accession: ENCSR506OGY
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB785OJE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dip3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Dlip3

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Dip3

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS196IGC at ENCODE; https://www.encodeproject.org/ENCBS196IGC/


title: TF ChIP-seq from whole organism (ENCLB968VYR)

description:
https://www.encodeproject.org/experiments/ENCSR365BZX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ZK337.2 in L4 larva worms.
experiment encode accession: ENCSR365BZX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR364VEB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB968VYR
size range: 150-350

value: whole organism

value: whole organisms

value: L4 larva

value: ENCBS630NPL at ENCODE; https://www.encodeproject.org/ENCBS630NPL/


title: Control ChIP-seq from whole organism (ENCLB355QDY)

description:
https://www.encodeproject.org/experiments/ENCSR354FZU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y75B8A.6-eGFP fusion proteins.
experiment encode accession: ENCSR354FZU
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB355QDY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12275 (st12275[Y75B8A.6 ::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y75B8A.6

value: 48 hour

value: L1 larva starved after bleaching

value: ENCBS597KFE at ENCODE; https://www.encodeproject.org/ENCBS597KFE/


title: TF ChIP-seq from whole organism (ENCLB313VMB)

description:
https://www.encodeproject.org/experiments/ENCSR999ZCR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing dm-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR999ZCR
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR264VTB
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB313VMB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: dm

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dm

value: pooled male and female

value: 0-16 hour

value: ENCBS725PRC at ENCODE; https://www.encodeproject.org/ENCBS725PRC/


title: Control ChIP-seq from whole organism (ENCLB962PCC)

description:
https://www.encodeproject.org/experiments/ENCSR352ODW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nfya-2-eGFP fusion proteins.
experiment encode accession: ENCSR352ODW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB962PCC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12238 (st12238[nfya-2::TY1::EGFP::3xFLAG] I) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans nfya-2

value: not collected

value: young adult

value: 64 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS292IYR at ENCODE; https://www.encodeproject.org/ENCBS292IYR/


title: Control ChIP-seq from whole organism (ENCLB764AZW)

description:
https://www.encodeproject.org/experiments/ENCSR097LJS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing daf-19-eGFP fusion proteins.
experiment encode accession: ENCSR097LJS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB764AZW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP794 (wgIs794(daf-19::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0088_6F02);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans daf-19

value: whole organism

value: whole organisms

value: L4 larva

value: ENCBS366CUG at ENCODE; https://www.encodeproject.org/ENCBS366CUG/


title: Control ChIP-seq from whole organism (ENCLB669ORA)

description:
https://www.encodeproject.org/experiments/ENCSR826RWT/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8632-eGFP fusion proteins.
experiment encode accession: ENCSR826RWT
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB669ORA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8632-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster ZnT49B

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8632

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS533CVX at ENCODE; https://www.encodeproject.org/ENCBS533CVX/


title: Control ChIP-seq from whole organism (ENCLB349ZAA)

description:
https://www.encodeproject.org/experiments/ENCSR364VEB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR364VEB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB349ZAA
size range: 150-350

value: not applicable

value: pooled male and female

value: Michael Snyder, Stanford

value: CGC

value: ENCBS630NPL at ENCODE; https://www.encodeproject.org/ENCBS630NPL/


title: Control ChIP-seq from whole organism (ENCLB125SOP)

description:
https://www.encodeproject.org/experiments/ENCSR364VEB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR364VEB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB125SOP
size range: 150-350

value: ENCBS540TVY at ENCODE; https://www.encodeproject.org/ENCBS540TVY/


title: Control ChIP-seq from whole organism (ENCLB895QMB)

description:
https://www.encodeproject.org/experiments/ENCSR095DUV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F44E2.7-eGFP fusion proteins.
experiment encode accession: ENCSR095DUV
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB895QMB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP381 (wgIs381(F44E2.7::TY1 EGFP 3xFLAG(P000012_B04);unc-119(+);unc-119(tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F44E2.7

value: whole organism

value: not collected

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS854SJE at ENCODE; https://www.encodeproject.org/ENCBS854SJE/


title: TF ChIP-seq from whole organism (ENCLB514FZI)

description:
https://www.encodeproject.org/experiments/ENCSR348WQD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lag-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR348WQD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR426AYW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB514FZI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12314 (st12314(lag-1::TY1::EGFP::3xFLAG] IV) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lag-1

value: whole organisms

value: young adult

value: 62 hour

value: ENCBS346QEA at ENCODE; https://www.encodeproject.org/ENCBS346QEA/


title: Control ChIP-seq from whole organism (ENCLB051XPU)

description:
https://www.encodeproject.org/experiments/ENCSR998VHS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing cnc-eGFP fusion proteins.
experiment encode accession: ENCSR998VHS
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB051XPU
fragmentation methods: sonication (Bioruptor generic)
size range: 225-350

source_name: Drosophila melanogaster strain cnc-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster cnc

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cnc

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS567LIW at ENCODE; https://www.encodeproject.org/ENCBS567LIW/


title: Control ChIP-seq from whole organism (ENCLB852DUC)

description:
https://www.encodeproject.org/experiments/ENCSR364HHR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR364HHR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB852DUC
size range: 150-350

source_name: Caenorhabditis elegans strain OP83 (unc-119(ed3) III; wgIs83) mixed sex L3 larva insertion targeting C. elegans zag-1

value: whole organism

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS773TXC at ENCODE; https://www.encodeproject.org/ENCBS773TXC/


title: TF ChIP-seq from whole organism (ENCLB746RBI)

description:
https://www.encodeproject.org/experiments/ENCSR348WQD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lag-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR348WQD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR426AYW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB746RBI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not collected

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS157ELB at ENCODE; https://www.encodeproject.org/ENCBS157ELB/


title: Control ChIP-seq from whole organism (ENCLB977CMJ)

description:
https://www.encodeproject.org/experiments/ENCSR826JGA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG11398-eGFP fusion proteins.
experiment encode accession: ENCSR826JGA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB977CMJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11398-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG11398

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11398

value: embryonic

value: 0-24 hour

value: ENCBS746BQN at ENCODE; https://www.encodeproject.org/ENCBS746BQN/


title: TF ChIP-seq from whole organism (ENCLB515ODV)

description:
https://www.encodeproject.org/experiments/ENCSR364IJK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against ama-1 in L4 larva worms.
experiment encode accession: ENCSR364IJK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR626WON
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB515ODV
size range: 150-350
instrument models: Illumina Genome Analyzer IIx,Illumina Genome Analyzer

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L4 larva whole organism

value: whole organism

value: L4 larva

value: unknown

value: ENCBS003NAQ at ENCODE; https://www.encodeproject.org/ENCBS003NAQ/


title: Control ChIP-seq from whole organism (ENCLB772EFO)

description:
https://www.encodeproject.org/experiments/ENCSR085XBF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y67H2A.10-eGFP fusion proteins.
experiment encode accession: ENCSR085XBF
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB772EFO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12295 (st12295[Y67H2A.10::TY1::EGFP::3xFLAG] IV) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y67H2A.10

value: young adult

value: 63 hour

value: ENCBS849ZRQ at ENCODE; https://www.encodeproject.org/ENCBS849ZRQ/


title: TF ChIP-seq from whole organism (ENCLB638GFX)

description:
https://www.encodeproject.org/experiments/ENCSR084SGF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y79H2A.3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR084SGF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR923LMS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB638GFX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12273 (st12273[Y79H2A.3::TY1::EGFP::3xFLAG] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y79H2A.3

value: whole organisms

value: not collected

value: ENCBS472PWS at ENCODE; https://www.encodeproject.org/ENCBS472PWS/


title: TF ChIP-seq from whole organism (ENCLB519ZRY)

description:
https://www.encodeproject.org/experiments/ENCSR824RLH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR824RLH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR537CBN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB519ZRY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain br-rj-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster br

value: br

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RJ

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS552ZES at ENCODE; https://www.encodeproject.org/ENCBS552ZES/


title: TF ChIP-seq from whole organism (ENCLB547JUY)

description:
https://www.encodeproject.org/experiments/ENCSR361LFB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-88-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR361LFB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR120AEA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB547JUY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP593 (wgIs593(ceh-88::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0091_2F07);unc-119(+));unc-119 (tm4063)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-88

value: whole organism

value: not applicable

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS842IUZ at ENCODE; https://www.encodeproject.org/ENCBS842IUZ/


title: TF ChIP-seq from whole organism (ENCLB477ZDP)

description:
https://www.encodeproject.org/experiments/ENCSR361LFB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-88-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR361LFB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR120AEA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB477ZDP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not collected

value: ENCBS065YZR at ENCODE; https://www.encodeproject.org/ENCBS065YZR/


title: TF ChIP-seq from whole organism (ENCLB314QYB)

description:
https://www.encodeproject.org/experiments/ENCSR082ELO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y95B8A.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR082ELO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR021PTZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB314QYB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12277 (st12277[Y95B8A.8 ::TY1::EGFP::3xFLAG] I) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y95B8A.8

value: young adult

value: 63 hour

value: ENCBS633NVP at ENCODE; https://www.encodeproject.org/ENCBS633NVP/


title: Control ChIP-seq from whole organism (ENCLB589VPM)

description:
https://www.encodeproject.org/experiments/ENCSR364HHR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR364HHR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB589VPM
size range: 150-350

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS190GQV at ENCODE; https://www.encodeproject.org/ENCBS190GQV/


title: TF ChIP-seq from whole organism (ENCLB319QCY)

description:
https://www.encodeproject.org/experiments/ENCSR082ELO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y95B8A.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR082ELO
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR021PTZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB319QCY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: ENCBS466QOD at ENCODE; https://www.encodeproject.org/ENCBS466QOD/


title: Control ChIP-seq from whole organism (ENCLB260YTW)

description:
https://www.encodeproject.org/experiments/ENCSR259OSS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR259OSS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB260YTW
size range: 150-350

source_name: Caenorhabditis elegans strain OP174 (unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)) mixed sex L3 larva insertion targeting C. elegans ces-1

value: ENCBS020ESR at ENCODE; https://www.encodeproject.org/ENCBS020ESR/


title: TF ChIP-seq from whole organism (ENCLB471GOX)

description:
https://www.encodeproject.org/experiments/ENCSR824RLH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR824RLH
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR537CBN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB471GOX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: br

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RJ

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS376WUK at ENCODE; https://www.encodeproject.org/ENCBS376WUK/


title: Control ChIP-seq from whole organism (ENCLB226JTS)

description:
https://www.encodeproject.org/experiments/ENCSR070JAO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing attf-3-eGFP fusion proteins.
experiment encode accession: ENCSR070JAO
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB226JTS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12296 (st12296[attf-3::TY1::EGFP::3xFLAG] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans attf-3

value: whole organisms

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS307WWX at ENCODE; https://www.encodeproject.org/ENCBS307WWX/


title: Control ChIP-seq from whole organism (ENCLB276NSJ)

description:
https://www.encodeproject.org/experiments/ENCSR072VBV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing daf-8-eGFP fusion proteins.
experiment encode accession: ENCSR072VBV
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB276NSJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP790 (wgIs790(daf-8::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0088B10);unc-119(+));unc-119 (tm4063)) L4 larva (47 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans daf-8

value: whole organism

value: not applicable

value: L4 larva

value: 47 hour

value: ENCBS413XGY at ENCODE; https://www.encodeproject.org/ENCBS413XGY/


title: Control ChIP-seq from whole organism (ENCLB787JFZ)

description:
https://www.encodeproject.org/experiments/ENCSR247HDL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-28-eGFP fusion proteins.
experiment encode accession: ENCSR247HDL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB787JFZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12281 (st12281[ztf-28 ::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-28

value: ENCBS345MDO at ENCODE; https://www.encodeproject.org/ENCBS345MDO/


title: Control ChIP-seq from whole organism (ENCLB230GOK)

description:
https://www.encodeproject.org/experiments/ENCSR259OSS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR259OSS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB230GOK
size range: 150-350

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS124HYR at ENCODE; https://www.encodeproject.org/ENCBS124HYR/


title: TF ChIP-seq from whole organism (ENCLB536TIC)

description:
https://www.encodeproject.org/experiments/ENCSR183UTT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F26F4.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183UTT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR500UBZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB536TIC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP776 (wgIs776(F26F4.8::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0092_3C04);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F26F4.8

value: whole organisms

value: not collected

value: 48 hour

value: ENCBS361XXK at ENCODE; https://www.encodeproject.org/ENCBS361XXK/


title: TF ChIP-seq from whole organism (ENCLB685DQU)

description:
https://www.encodeproject.org/experiments/ENCSR183WML/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-20-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183WML
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR606PYG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB685DQU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12211 (st12211[ceh-20::TY1::EGFP::3xFLAG] III) L4 larva (49 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-20

value: 49 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS256MFZ at ENCODE; https://www.encodeproject.org/ENCBS256MFZ/


title: TF ChIP-seq from whole organism (ENCLB393RIS)

description:
https://www.encodeproject.org/experiments/ENCSR824HQS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing odsH-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR824HQS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR576KIW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB393RIS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain OdsH-GFP wandering third instar larva insertion targeting D. melanogaster OdsH

value: OdsH

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to OdsH

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS509YQP at ENCODE; https://www.encodeproject.org/ENCBS509YQP/


title: TF ChIP-seq from whole organism (ENCLB807PBF)

description:
https://www.encodeproject.org/experiments/ENCSR183WML/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-20-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183WML
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR606PYG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB807PBF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: L4 larva

value: ENCBS384QGB at ENCODE; https://www.encodeproject.org/ENCBS384QGB/


title: TF ChIP-seq from whole organism (ENCLB065CTP)

description:
https://www.encodeproject.org/experiments/ENCSR824HQS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing odsH-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR824HQS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR576KIW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB065CTP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: unknown

value: ENCBS727RJY at ENCODE; https://www.encodeproject.org/ENCBS727RJY/


title: TF ChIP-seq from whole organism (ENCLB508TBA)

description:
https://www.encodeproject.org/experiments/ENCSR360ADL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-hlh-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR360ADL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR824HDB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB508TBA
size range: 150-350

source_name: Caenorhabditis elegans strain OP64 (unc-119(ed3) III; wgIs64) mixed sex mixed stage (embryo) insertion targeting C. elegans hlh-1

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS458TLR at ENCODE; https://www.encodeproject.org/ENCBS458TLR/


title: Control ChIP-seq from whole organism (ENCLB294TYO)

description:
https://www.encodeproject.org/experiments/ENCSR996JOD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing tin-eGFP fusion proteins.
experiment encode accession: ENCSR996JOD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB294TYO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Drosophila melanogaster strain tin-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster tin

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to tin

value: embryonic

value: 0-16 hour

value: ENCBS994IWG at ENCODE; https://www.encodeproject.org/ENCBS994IWG/


title: Control ChIP-seq from whole organism (ENCLB542OFT)

description:
https://www.encodeproject.org/experiments/ENCSR183OHH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing mdt-29-eGFP fusion proteins.
experiment encode accession: ENCSR183OHH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB542OFT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RJP4521 (rp133 (Degron::GFP::mt-29) III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mdt-29

value: whole organisms

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS076YQS at ENCODE; https://www.encodeproject.org/ENCBS076YQS/


title: TF ChIP-seq from whole organism (ENCLB601WUX)

description:
https://www.encodeproject.org/experiments/ENCSR181WKY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing attf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR181WKY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR070JAO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB601WUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: young adult

value: 63 hour

value: ENCBS736YOO at ENCODE; https://www.encodeproject.org/ENCBS736YOO/


title: Control ChIP-seq from whole organism (ENCLB190LGH)

description:
https://www.encodeproject.org/experiments/ENCSR357SUE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR357SUE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB190LGH
size range: 150-350

source_name: Caenorhabditis elegans strain OP304 (unc-119(ed3) III; wgIs304) mixed sex L2 larva insertion targeting C. elegans fos-1

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS532NSF at ENCODE; https://www.encodeproject.org/ENCBS532NSF/


title: TF ChIP-seq from whole organism (ENCLB251ZNP)

description:
https://www.encodeproject.org/experiments/ENCSR504JFN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing eyg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504JFN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964EHG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB251ZNP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain eyg-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster eyg

value: eyg

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to eyg

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS123WBH at ENCODE; https://www.encodeproject.org/ENCBS123WBH/


title: Control ChIP-seq from whole organism (ENCLB553FDA)

description:
https://www.encodeproject.org/experiments/ENCSR994QGM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing zfh2-eGFP fusion proteins.
experiment encode accession: ENCSR994QGM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB553FDA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain zfh2-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster zfh2

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to zfh2

value: ENCBS087LOJ at ENCODE; https://www.encodeproject.org/ENCBS087LOJ/


title: Control ChIP-seq from whole organism (ENCLB405SUT)

description:
https://www.encodeproject.org/experiments/ENCSR357SUE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR357SUE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB405SUT
size range: 150-350

value: pooled male and female

value: L2 larva

value: ENCBS945EQK at ENCODE; https://www.encodeproject.org/ENCBS945EQK/


title: TF ChIP-seq from whole organism (ENCLB147NZI)

description:
https://www.encodeproject.org/experiments/ENCSR183UTT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing F26F4.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR183UTT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR500UBZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB147NZI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS525VVQ at ENCODE; https://www.encodeproject.org/ENCBS525VVQ/


title: TF ChIP-seq from whole organism (ENCLB121KCP)

description:
https://www.encodeproject.org/experiments/ENCSR084SGF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y79H2A.3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR084SGF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR923LMS
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB121KCP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12273 (st12273[Y79H2A.3::TY1::EGFP::3xFLAG] III) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y79H2A.3

value: whole organism

value: not applicable

value: young adult

value: 63 hour

value: ENCBS561NTS at ENCODE; https://www.encodeproject.org/ENCBS561NTS/


title: TF ChIP-seq from whole organism (ENCLB776XNE)

description:
https://www.encodeproject.org/experiments/ENCSR181WKY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing attf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR181WKY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR070JAO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB776XNE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS959ZVL at ENCODE; https://www.encodeproject.org/ENCBS959ZVL/


title: TF ChIP-seq from whole organism (ENCLB208EXW)

description:
https://www.encodeproject.org/experiments/ENCSR181RJW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing isw-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR181RJW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR475NRH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB208EXW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP181 (wgIs181(isw-1::TY1 EGFP 3xFLAG(P000003_F05); unc-119(+));unc-119(ed3)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans isw-1

value: L1 larva

value: 6 hour

value: ENCBS704ZBH at ENCODE; https://www.encodeproject.org/ENCBS704ZBH/


title: TF ChIP-seq from whole organism (ENCLB406KLN)

description:
https://www.encodeproject.org/experiments/ENCSR504JFN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing eyg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504JFN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964EHG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB406KLN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: eyg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to eyg

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS831NAP at ENCODE; https://www.encodeproject.org/ENCBS831NAP/


title: TF ChIP-seq from whole organism (ENCLB340XZD)

description:
https://www.encodeproject.org/experiments/ENCSR181RJW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing isw-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR181RJW
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR475NRH
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB340XZD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: not collected

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS068MHI at ENCODE; https://www.encodeproject.org/ENCBS068MHI/


title: TF ChIP-seq from whole organism (ENCLB301DSB)

description:
https://www.encodeproject.org/experiments/ENCSR258DIG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-55 in L2 larva worms.
experiment encode accession: ENCSR258DIG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR453EAC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB301DSB
size range: 150-350

source_name: Caenorhabditis elegans strain NC1639 ([wdIs49 (pttr39::UNC-55a::GFP; dpy-20+) III) mixed sex L2 larva insertion targeting C. elegans unc-55

value: whole organisms

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS254XUS at ENCODE; https://www.encodeproject.org/ENCBS254XUS/


title: TF ChIP-seq from whole organism (ENCLB604UUY)

description:
https://www.encodeproject.org/experiments/ENCSR504JFN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing eyg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504JFN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR964EHG
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB604UUY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: eyg

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to eyg

value: pooled male and female

value: embryonic

value: 0-24 hour

value: ENCBS976CGM at ENCODE; https://www.encodeproject.org/ENCBS976CGM/


title: TF ChIP-seq from whole organism (ENCLB335HIY)

description:
https://www.encodeproject.org/experiments/ENCSR258DIG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-unc-55 in L2 larva worms.
experiment encode accession: ENCSR258DIG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR453EAC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB335HIY
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-55

value: Michael Snyder

value: ENCBS087QTY at ENCODE; https://www.encodeproject.org/ENCBS087QTY/


title: TF ChIP-seq from whole organism (ENCLB344QSZ)

description:
https://www.encodeproject.org/experiments/ENCSR176LKG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tag-97-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR176LKG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR204AYA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB344QSZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP719 (wgIs719(tag-97::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0090_5G12);unc-119(+));unc-119 (tm4063)) L4 larva (66 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans svh-5

value: whole organisms

value: not collected

value: L4 larva

value: 66 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS868OME at ENCODE; https://www.encodeproject.org/ENCBS868OME/


title: TF ChIP-seq from whole organism (ENCLB360FEW)

description:
https://www.encodeproject.org/experiments/ENCSR176LKG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing tag-97-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR176LKG
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR204AYA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB360FEW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS118QCJ at ENCODE; https://www.encodeproject.org/ENCBS118QCJ/


title: TF ChIP-seq from whole organism (ENCLB492LYX)

description:
https://www.encodeproject.org/experiments/ENCSR258DIG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-55 in L2 larva worms.
experiment encode accession: ENCSR258DIG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR453EAC
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB492LYX
size range: 150-350

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS212MAP at ENCODE; https://www.encodeproject.org/ENCBS212MAP/


title: Control ChIP-seq from whole organism (ENCLB108CNG)

description:
https://www.encodeproject.org/experiments/ENCSR240VKL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing madf-3-eGFP fusion proteins.
experiment encode accession: ENCSR240VKL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB108CNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12241 (st12241[madf-3::TY1::EGFP::3xFLAG] II) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-3

value: whole organism

value: not applicable

value: young adult

value: 63 hour

value: ENCBS481WPQ at ENCODE; https://www.encodeproject.org/ENCBS481WPQ/


title: Control ChIP-seq from whole organism (ENCLB218JXW)

description:
https://www.encodeproject.org/experiments/ENCSR354PDY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR354PDY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB218JXW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: Michael Snyder

value: ENCBS028KDC at ENCODE; https://www.encodeproject.org/ENCBS028KDC/


title: TF ChIP-seq from whole organism (ENCLB917YPG)

description:
https://www.encodeproject.org/experiments/ENCSR360ADL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-hlh-1 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR360ADL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR824HDB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB917YPG
size range: 150-350

value: mixed stage (embryonic)

value: ENCBS747RHC at ENCODE; https://www.encodeproject.org/ENCBS747RHC/


title: TF ChIP-seq from whole organism (ENCLB150RWD)

description:
https://www.encodeproject.org/experiments/ENCSR504AYW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9305-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504AYW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR955GGX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB150RWD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9305-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Bdp1

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9305

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS012PYJ at ENCODE; https://www.encodeproject.org/ENCBS012PYJ/


title: TF ChIP-seq from whole organism (ENCLB339OTI)

description:
https://www.encodeproject.org/experiments/ENCSR170DIK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ets-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR170DIK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR986VZB
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB339OTI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP809 (wgIs809(ets-5::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0090_2C01);unc-119(+));unc-119 (tm4063)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ets-5

value: whole organism

value: not applicable

value: not collected

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS328TFC at ENCODE; https://www.encodeproject.org/ENCBS328TFC/


title: TF ChIP-seq from whole organism (ENCLB928NLS)

description:
https://www.encodeproject.org/experiments/ENCSR049CFS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing T26A8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR049CFS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR280QNW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB928NLS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP692 (wgIs692(T26A8.4::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0035_1B01);unc-119(+));unc-119 (tm4063)) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans T26A8.4

value: whole organisms

value: L4 larva

value: 48 hour

value: ENCBS821QRM at ENCODE; https://www.encodeproject.org/ENCBS821QRM/


title: Control ChIP-seq from whole organism (ENCLB919CEK)

description:
https://www.encodeproject.org/experiments/ENCSR182GCE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing C06A6.2-eGFP fusion proteins.
experiment encode accession: ENCSR182GCE
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB919CEK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP810 (wgIs810(C06A6.2::TY1 EGFP 3xFLAG(GlyStock16H04_GlyStock16H04);unc-119(+));unc-119 (tm4063)) young adult (67 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans C06A6.2

value: young adult

value: 67 hour

value: ENCBS971QBJ at ENCODE; https://www.encodeproject.org/ENCBS971QBJ/


title: TF ChIP-seq from whole organism (ENCLB289LHH)

description:
https://www.encodeproject.org/experiments/ENCSR504AYW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9305-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504AYW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR955GGX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB289LHH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9305

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS787OXG at ENCODE; https://www.encodeproject.org/ENCBS787OXG/


title: TF ChIP-seq from whole organism (ENCLB084LBH)

description:
https://www.encodeproject.org/experiments/ENCSR170DIK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ets-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR170DIK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR986VZB
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB084LBH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: not collected

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS188HBL at ENCODE; https://www.encodeproject.org/ENCBS188HBL/


title: Control ChIP-seq from whole organism (ENCLB887ZRE)

description:
https://www.encodeproject.org/experiments/ENCSR255HJY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR255HJY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB887ZRE
size range: 150-350

source_name: Caenorhabditis elegans strain OP318 (unc-119(ed3) III; wgIs318) mixed sex L3 larva insertion targeting C. elegans nhr-12

value: whole organisms

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS261MLJ at ENCODE; https://www.encodeproject.org/ENCBS261MLJ/


title: TF ChIP-seq from whole organism (ENCLB378VNL)

description:
https://www.encodeproject.org/experiments/ENCSR049CFS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing T26A8.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR049CFS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR280QNW
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB378VNL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: L4 larva

value: 48 hour

value: L1 larva starved after bleaching

value: ENCBS383JPJ at ENCODE; https://www.encodeproject.org/ENCBS383JPJ/


title: Control ChIP-seq from whole organism (ENCLB304LWI)

description:
https://www.encodeproject.org/experiments/ENCSR048CGN/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hmg-1.2-eGFP fusion proteins.
experiment encode accession: ENCSR048CGN
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB304LWI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12210 (st12210[hmg-1.2::TY1::EGFP::3xFLAG] III) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hmg-1.2

value: whole organism

value: not applicable

value: young adult

value: 65 hour

value: ENCBS118VBK at ENCODE; https://www.encodeproject.org/ENCBS118VBK/


title: TF ChIP-seq from whole organism (ENCLB084CWH)

description:
https://www.encodeproject.org/experiments/ENCSR046EEF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sox-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR046EEF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR861BPL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB084CWH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12244 (st12244[sox-2::TY1::EGFP::3xFLAG] X.) late embryo (3.5 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans sox-2

value: not collected

value: late embryonic

value: 3.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS040QJM at ENCODE; https://www.encodeproject.org/ENCBS040QJM/


title: TF ChIP-seq from whole organism (ENCLB954CAS)

description:
https://www.encodeproject.org/experiments/ENCSR504AYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9305-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR504AYW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR955GGX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB954CAS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9305

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS309JKY at ENCODE; https://www.encodeproject.org/ENCBS309JKY/


title: Control ChIP-seq from whole organism (ENCLB569XHU)

description:
https://www.encodeproject.org/experiments/ENCSR255HJY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR255HJY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB569XHU
size range: 150-350

value: whole organism

value: not applicable

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS430RON at ENCODE; https://www.encodeproject.org/ENCBS430RON/


title: Control ChIP-seq from whole organism (ENCLB493TAS)

description:
https://www.encodeproject.org/experiments/ENCSR045ZHJ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lir-1-eGFP fusion proteins.
experiment encode accession: ENCSR045ZHJ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB493TAS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12318 (st12318(TY1::EGFP::3xFLAG::lir-1] II) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans lir-1

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS061TTB at ENCODE; https://www.encodeproject.org/ENCBS061TTB/


title: TF ChIP-seq from whole organism (ENCLB599WRI)

description:
https://www.encodeproject.org/experiments/ENCSR046EEF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sox-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR046EEF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR861BPL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB599WRI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: late embryonic

value: 3.5 hour

value: egg bleaching

value: ENCBS209LFM at ENCODE; https://www.encodeproject.org/ENCBS209LFM/


title: TF ChIP-seq from whole organism (ENCLB660EFB)

description:
https://www.encodeproject.org/experiments/ENCSR493LWV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hmx-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR493LWV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR132NXK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB660EFB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hmx-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hmx

value: Hmx

value: whole organism

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a Hmx-GFP fusion gene

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS449CZD at ENCODE; https://www.encodeproject.org/ENCBS449CZD/


title: Control ChIP-seq from whole organism (ENCLB215EFP)

description:
https://www.encodeproject.org/experiments/ENCSR992ICQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing mod(mdg4)-eGFP fusion proteins.
experiment encode accession: ENCSR992ICQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB215EFP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain mod(mdg4)-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster mod(mdg4)

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to mod(mdg4)

value: wandering third instar larva

value: unknown

value: Kevin White

value: ENCBS798RNT at ENCODE; https://www.encodeproject.org/ENCBS798RNT/