title: TF ChIP-seq from whole organism (ENCLB324GYU)

description:
https://www.encodeproject.org/experiments/ENCSR481UIZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR481UIZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR957CPI
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB324GYU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12283 (st12283[ztf-29 ::TY1::EGFP::3xFLAG] III) midembryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-29

value: not collected

value: midembryonic

value: 0 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS455DJM at ENCODE; https://www.encodeproject.org/ENCBS455DJM/


title: Control ChIP-seq from whole organism (ENCLB339MTV)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR033RMH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9876-eGFP fusion proteins.
experiment encode accession: ENCSR033RMH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB339MTV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG9876-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9876

value: whole organism

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9876

tag: Sex

value: pooled male and female

tag: dev stage

value: embryonic

tag: age

value: 0-24 hour

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS829SWW at ENCODE; https://www.encodeproject.org/ENCBS829SWW/


title: Control ChIP-seq from whole organism (ENCLB120USG)

description:
https://www.encodeproject.org/experiments/ENCSR481MQX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing mab-9-eGFP fusion proteins.
experiment encode accession: ENCSR481MQX
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB120USG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain RW12257 (st12257[mab-9::TY1::EGFP::3xFLAG] II) L1 larva (6 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans mab-9

value: L1 larva

value: 6 hour

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS829UHT at ENCODE; https://www.encodeproject.org/ENCBS829UHT/


title: TF ChIP-seq from whole organism (ENCLB644UDH)

description:
https://www.encodeproject.org/experiments/ENCSR481UIZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ztf-29-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR481UIZ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR957CPI
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB644UDH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

tag: antibody

value: not collected

value: midembryonic

value: 0 hour

value: Valerie Reinke, Yale

value: egg bleaching

value: ENCBS251OXT at ENCODE; https://www.encodeproject.org/ENCBS251OXT/


title: TF ChIP-seq from whole organism (ENCLB361UBS)

description:
https://www.encodeproject.org/experiments/ENCSR694VLW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DVE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR694VLW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR496PAW
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB361UBS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP398 (unc-119(tm4063) III; wgIs398) hermaphrodite L4 larva insertion targeting C. elegans dve-1

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DVE-1

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke

value: ENCBS440BRQ at ENCODE; https://www.encodeproject.org/ENCBS440BRQ/


title: Control ChIP-seq from whole organism (ENCLB265AOX)

description:
https://www.encodeproject.org/experiments/ENCSR694MIX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR694MIX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB265AOX
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L2 larva insertion targeting C. elegans snpc-4

extract_protocol: not provided

value: pooled male and female

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS643ZST at ENCODE; https://www.encodeproject.org/ENCBS643ZST/


title: Control ChIP-seq from whole organism (ENCLB565ZCJ)

description:
https://www.encodeproject.org/experiments/ENCSR477IRP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing set-16-eGFP fusion proteins.
experiment encode accession: ENCSR477IRP
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB565ZCJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12223 (st12223[set-16::TY1::EGFP::3xFLAG] III) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans set-16

value: not collected

value: 48 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS348YJD at ENCODE; https://www.encodeproject.org/ENCBS348YJD/


title: TF ChIP-seq from whole organism (ENCLB122VYB)

description:
https://www.encodeproject.org/experiments/ENCSR808WSM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR808WSM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR240VKL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB122VYB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12241 (st12241[madf-3::TY1::EGFP::3xFLAG] II) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-3

value: whole organism

value: whole organisms

value: not applicable

value: young adult

value: 63 hour

value: ENCBS782FQY at ENCODE; https://www.encodeproject.org/ENCBS782FQY/


title: TF ChIP-seq from whole organism (ENCLB178HXG)

description:
https://www.encodeproject.org/experiments/ENCSR808WSM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR808WSM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR240VKL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB178HXG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Valerie Reinke

value: ENCBS718ZQF at ENCODE; https://www.encodeproject.org/ENCBS718ZQF/


title: Control ChIP-seq from whole organism (ENCLB556UGL)

description:
https://www.encodeproject.org/experiments/ENCSR694MIX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR694MIX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB556UGL
size range: 150-350

value: pooled male and female

value: L2 larva

value: unknown

value: ENCBS647FXT at ENCODE; https://www.encodeproject.org/ENCBS647FXT/


title: TF ChIP-seq from whole organism (ENCLB358ZYI)

description:
https://www.encodeproject.org/experiments/ENCSR677HTK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing K11D2.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR677HTK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR773TZL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB358ZYI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12320 (st12320(K11D2.4::TY1::EGFP::3xFLAG] I) young adult (62 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans K11D2.4

value: not collected

value: 62 hour

value: ENCBS802IID at ENCODE; https://www.encodeproject.org/ENCBS802IID/


title: Control ChIP-seq from whole organism (ENCLB528AWV)

description:
https://www.encodeproject.org/experiments/ENCSR475NRH/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing isw-1-eGFP fusion proteins.
experiment encode accession: ENCSR475NRH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB528AWV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP181 (wgIs181(isw-1::TY1 EGFP 3xFLAG(P000003_F05); unc-119(+));unc-119(ed3)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans isw-1

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS893EMD at ENCODE; https://www.encodeproject.org/ENCBS893EMD/


title: Control ChIP-seq from whole organism (ENCLB087EBS)

description:
https://www.encodeproject.org/experiments/ENCSR212KSR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing brk-eGFP fusion proteins.
experiment encode accession: ENCSR212KSR
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB087EBS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain brk-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster brk

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to brk

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS063IRL at ENCODE; https://www.encodeproject.org/ENCBS063IRL/


title: TF ChIP-seq from whole organism (ENCLB694OJR)

description:
https://www.encodeproject.org/experiments/ENCSR308HCJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Smox-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR308HCJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR292ARO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB694OJR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Smox-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Smox

value: Smox

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Smox

value: pooled male and female

value: prepupa

value: unknown

tag: fly synchronization stage

value: white prepupa

value: ENCBS510GPE at ENCODE; https://www.encodeproject.org/ENCBS510GPE/


title: TF ChIP-seq from whole organism (ENCLB975CGP)

description:
https://www.encodeproject.org/experiments/ENCSR308HCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Smox-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR308HCJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR292ARO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB975CGP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS655VLK at ENCODE; https://www.encodeproject.org/ENCBS655VLK/


title: Control ChIP-seq from whole organism (ENCLB492BAM)

description:
https://www.encodeproject.org/experiments/ENCSR561RIA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing RPC-1-eGFP fusion proteins.
experiment encode accession: ENCSR561RIA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-03-09
lab: Valerie Reinke, Yale
library encode accession: ENCLB492BAM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL517 hermaphrodite young adult insertion targeting C. elegans rpc-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RPC-1

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS359WPK at ENCODE; https://www.encodeproject.org/ENCBS359WPK/


title: Control ChIP-seq from whole organism (ENCLB399HYU)

description:
https://www.encodeproject.org/experiments/ENCSR475NRH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing isw-1-eGFP fusion proteins.
experiment encode accession: ENCSR475NRH
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB399HYU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

value: not collected

value: L1 larva

value: 6 hour

value: L1 larva starved after bleaching

value: ENCBS093KOI at ENCODE; https://www.encodeproject.org/ENCBS093KOI/


title: TF ChIP-seq from whole organism (ENCLB946GLB)

description:
https://www.encodeproject.org/experiments/ENCSR677HTK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing K11D2.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR677HTK
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR773TZL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB946GLB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: 62 hour

value: ENCBS857AWN at ENCODE; https://www.encodeproject.org/ENCBS857AWN/


title: Control ChIP-seq from whole organism (ENCLB234WTZ)

description:
https://www.encodeproject.org/experiments/ENCSR563NMV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR563NMV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB234WTZ
size range: 150-350

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex L1 larva insertion targeting C. elegans lsy-2

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS179IGV at ENCODE; https://www.encodeproject.org/ENCBS179IGV/


title: Control ChIP-seq from whole organism (ENCLB894QSE)

description:
https://www.encodeproject.org/experiments/ENCSR475NQN/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing hmg-1.1-eGFP fusion proteins.
experiment encode accession: ENCSR475NQN
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB894QSE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12311 (st12311(TY1::EGFP::3xFLAG::hmg-1.1] II) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hmg-1.1

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS949EDQ at ENCODE; https://www.encodeproject.org/ENCBS949EDQ/


title: TF ChIP-seq from whole organism (ENCLB384CTO)

description:
https://www.encodeproject.org/experiments/ENCSR032CDC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032CDC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR066HHD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB384CTO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain chif-RB-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster chif

value: chif

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS707CDY at ENCODE; https://www.encodeproject.org/ENCBS707CDY/


title: TF ChIP-seq from whole organism (ENCLB077PCZ)

description:
https://www.encodeproject.org/experiments/ENCSR555ZCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L1 larva worms.
experiment encode accession: ENCSR555ZCZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR578VGI
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB077PCZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP212 (unc-119(ed3) III; ddEx58) mixed sex L1 larva insertion targeting C. elegans ceh-82

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS254PAW at ENCODE; https://www.encodeproject.org/ENCBS254PAW/


title: TF ChIP-seq from whole organism (ENCLB413WZD)

description:
https://www.encodeproject.org/experiments/ENCSR694VLW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DVE-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR694VLW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR496PAW
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB413WZD
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DVE-1

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS810VED at ENCODE; https://www.encodeproject.org/ENCBS810VED/


title: TF ChIP-seq from whole organism (ENCLB190DYJ)

description:
https://www.encodeproject.org/experiments/ENCSR308HCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Smox-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR308HCJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR292ARO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB190DYJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Smox

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Smox

value: prepupa

value: white prepupa

value: ENCBS237IFQ at ENCODE; https://www.encodeproject.org/ENCBS237IFQ/


title: TF ChIP-seq from whole organism (ENCLB563UEV)

description:
https://www.encodeproject.org/experiments/ENCSR472KYD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y53G8AR.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR472KYD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR668TLF
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB563UEV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12264 (st12264[Y53G8AR.9::TY1::EGFP::3xFLAG] III) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y53G8AR.9

value: not collected

value: young adult

value: 64 hour

value: L1 larva starved after bleaching

value: ENCBS458OAD at ENCODE; https://www.encodeproject.org/ENCBS458OAD/


title: TF ChIP-seq from whole organism (ENCLB195OUS)

description:
https://www.encodeproject.org/experiments/ENCSR555ZCZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against F45C12.2 in L1 larva worms.
experiment encode accession: ENCSR555ZCZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR578VGI
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB195OUS
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F45C12.2

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS846OGI at ENCODE; https://www.encodeproject.org/ENCBS846OGI/


title: Control ChIP-seq from whole organism (ENCLB442QOG)

description:
https://www.encodeproject.org/experiments/ENCSR474TMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing madf-5-eGFP fusion proteins.
experiment encode accession: ENCSR474TMQ
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB442QOG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12308 (st12308(madf-5::TY1::EGFP::3xFLAG] II) L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans madf-5

value: whole organism

value: whole organisms

value: not applicable

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS845AAL at ENCODE; https://www.encodeproject.org/ENCBS845AAL/


title: TF ChIP-seq from whole organism (ENCLB201ILV)

description:
https://www.encodeproject.org/experiments/ENCSR032CDC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032CDC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR066HHD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB201ILV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: chif

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif-RB

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS046IHN at ENCODE; https://www.encodeproject.org/ENCBS046IHN/


title: Control ChIP-seq from whole organism (ENCLB180MDV)

description:
https://www.encodeproject.org/experiments/ENCSR030ZQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing grn-eGFP fusion proteins.
experiment encode accession: ENCSR030ZQQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-12-13
lab: Kevin White, UChicago
library encode accession: ENCLB180MDV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain grn-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster grn

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to grn

value: pooled male and female

value: ENCBS332DBB at ENCODE; https://www.encodeproject.org/ENCBS332DBB/


title: TF ChIP-seq from whole organism (ENCLB577LFV)

description:
https://www.encodeproject.org/experiments/ENCSR670VZM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sea-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR670VZM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR009EUK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB577LFV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP586 (wgIs586(sea-2::TY1 EGFP 3xFLAG(P000008_A02_13F06);unc-119(+));unc-119 (tm4063)) young adult (64 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans sea-2

value: whole organism

value: whole organisms

value: not collected

value: young adult

value: 64 hour

value: L1 larva starved after bleaching

value: ENCBS936YAQ at ENCODE; https://www.encodeproject.org/ENCBS936YAQ/


title: TF ChIP-seq from whole organism (ENCLB671HLE)

description:
https://www.encodeproject.org/experiments/ENCSR032CDC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing chif-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032CDC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR066HHD
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB671HLE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: chif

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to chif

value: ENCBS218UVI at ENCODE; https://www.encodeproject.org/ENCBS218UVI/


title: TF ChIP-seq from whole organism (ENCLB690AFF)

description:
https://www.encodeproject.org/experiments/ENCSR472KYD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y53G8AR.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR472KYD
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR668TLF
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB690AFF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS459ONN at ENCODE; https://www.encodeproject.org/ENCBS459ONN/


title: TF ChIP-seq from whole organism (ENCLB004PMB)

description:
https://www.encodeproject.org/experiments/ENCSR381RZV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against CRH-2 in L2 larva worms.
experiment encode accession: ENCSR381RZV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR067VBO
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB004PMB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP425 (unc-119(tm4063) III; wgIs425) mixed sex L2 larva insertion targeting C. elegans crh-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C27D6.4

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS396GFN at ENCODE; https://www.encodeproject.org/ENCBS396GFN/


title: Control ChIP-seq from whole organism (ENCLB619PXJ)

description:
https://www.encodeproject.org/experiments/ENCSR668TLF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing Y53G8AR.9-eGFP fusion proteins.
experiment encode accession: ENCSR668TLF
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB619PXJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not collected

value: young adult

value: ENCBS880JEV at ENCODE; https://www.encodeproject.org/ENCBS880JEV/


title: TF ChIP-seq from whole organism (ENCLB535VAJ)

description:
https://www.encodeproject.org/experiments/ENCSR668MQX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-91-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668MQX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR453NJA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB535VAJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12305 (st12305[ceh-91::TY1::EGFP::3xFLAG] III) young adult (62.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-91

value: not applicable

value: 62.5 hour

value: L1 larva starved after bleaching

value: ENCBS273GCM at ENCODE; https://www.encodeproject.org/ENCBS273GCM/


title: Control ChIP-seq from whole organism (ENCLB792GRT)

description:
https://www.encodeproject.org/experiments/ENCSR972WMG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nhr-19-eGFP fusion proteins.
experiment encode accession: ENCSR972WMG
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB792GRT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP791 (wgIs791(nhr-19::TY1 EGFP 3xFLAG(p_wTRG5_single_colony_c_0090_5D05);unc-119(+));unc-119 (tm4063)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-19

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS278WFC at ENCODE; https://www.encodeproject.org/ENCBS278WFC/


title: TF ChIP-seq from whole organism (ENCLB502JQT)

description:
https://www.encodeproject.org/experiments/ENCSR381RZV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against CRH-2 in L2 larva worms.
experiment encode accession: ENCSR381RZV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR067VBO
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB502JQT
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C27D6.4

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS203CDD at ENCODE; https://www.encodeproject.org/ENCBS203CDD/


title: TF ChIP-seq from whole organism (ENCLB751WIW)

description:
https://www.encodeproject.org/experiments/ENCSR202QJA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR202QJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR439VUM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB751WIW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox15-GFP mixed sex prepupa insertion targeting D. melanogaster Sox15

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox15

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: ENCBS223GGU at ENCODE; https://www.encodeproject.org/ENCBS223GGU/


title: TF ChIP-seq from whole organism (ENCLB803FQK)

description:
https://www.encodeproject.org/experiments/ENCSR202QJA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR202QJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR439VUM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB803FQK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS398CSA at ENCODE; https://www.encodeproject.org/ENCBS398CSA/


title: TF ChIP-seq from whole organism (ENCLB264XGZ)

description:
https://www.encodeproject.org/experiments/ENCSR552OIV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq against eGFP-sea-2 in L3 larva worms.
experiment encode accession: ENCSR552OIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR009OQO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB264XGZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) mixed sex L3 larva insertion targeting C. elegans sea-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SEA-2

value: L3 larva

value: Michael Snyder

value: ENCBS089YMF at ENCODE; https://www.encodeproject.org/ENCBS089YMF/


title: TF ChIP-seq from whole organism (ENCLB489QFD)

description:
https://www.encodeproject.org/experiments/ENCSR202QJA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR202QJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR439VUM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB489QFD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: pooled male and female

value: ENCBS533BWB at ENCODE; https://www.encodeproject.org/ENCBS533BWB/


title: TF ChIP-seq from whole organism (ENCLB966QDD)

description:
https://www.encodeproject.org/experiments/ENCSR667KII/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR667KII
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR502XCL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB966QDD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12201 (st12201[bed-1::TY1::EGFP::3xFLAG] V) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans bed-1

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS686SZV at ENCODE; https://www.encodeproject.org/ENCBS686SZV/


title: TF ChIP-seq from whole organism (ENCLB849YQD)

description:
https://www.encodeproject.org/experiments/ENCSR667KII/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing bed-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR667KII
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR502XCL
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB849YQD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS202JYW at ENCODE; https://www.encodeproject.org/ENCBS202JYW/


title: Control ChIP-seq from whole organism (ENCLB878SME)

description:
https://www.encodeproject.org/experiments/ENCSR294UFC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing repo-eGFP fusion proteins.
experiment encode accession: ENCSR294UFC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB878SME
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain repo-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster repo

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to repo

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS191VQB at ENCODE; https://www.encodeproject.org/ENCBS191VQB/


title: Control ChIP-seq from whole organism (ENCLB062ZYI)

description:
https://www.encodeproject.org/experiments/ENCSR661MKW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing flt-1-eGFP fusion proteins.
experiment encode accession: ENCSR661MKW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB062ZYI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP797 (wgIs797(flt-1::TY1 EGFP 3xFLAG(Fosmid: flt-1);unc-119(+));unc-119 (tm4063)) early embryo (1 hour) using egg bleaching insertion targeting C. elegans baz-2

value: not collected

value: early embryonic

value: 1 hour

value: egg bleaching

value: ENCBS030HQE at ENCODE; https://www.encodeproject.org/ENCBS030HQE/


title: TF ChIP-seq from whole organism (ENCLB504AXA)

description:
https://www.encodeproject.org/experiments/ENCSR552OIV/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq against eGFP-sea-2 in L3 larva worms.
experiment encode accession: ENCSR552OIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR009OQO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB504AXA
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SEA-2

value: pooled male and female

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS173LIC at ENCODE; https://www.encodeproject.org/ENCBS173LIC/


title: TF ChIP-seq from whole organism (ENCLB401JOY)

description:
https://www.encodeproject.org/experiments/ENCSR552OIV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-sea-2 in L3 larva worms.
experiment encode accession: ENCSR552OIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR009OQO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB401JOY
size range: 150-350

value: whole organism

value: whole organisms

value: not applicable

value: CGC

value: ENCBS813ONM at ENCODE; https://www.encodeproject.org/ENCBS813ONM/


title: TF ChIP-seq from whole organism (ENCLB786UBG)

description:
https://www.encodeproject.org/experiments/ENCSR663OQY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing D1046.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR663OQY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR395YHD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB786UBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP397 (wgIs397(D1046.2::TY1 EGFP 3xFLAG(91F09);unc-119(+);unc-119(tm4063)) L4 larva (50 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans D1046.2

value: not collected

value: L4 larva

value: 50 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS780UHR at ENCODE; https://www.encodeproject.org/ENCBS780UHR/


title: TF ChIP-seq from whole organism (ENCLB248BWM)

description:
https://www.encodeproject.org/experiments/ENCSR670VZM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sea-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR670VZM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR009EUK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB248BWM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: young adult

value: 64 hour

value: ENCBS588JKT at ENCODE; https://www.encodeproject.org/ENCBS588JKT/


title: Control ChIP-seq from whole organism (ENCLB365OUP)

description:
https://www.encodeproject.org/experiments/ENCSR129EXW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing TFAM-eGFP fusion proteins.
experiment encode accession: ENCSR129EXW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB365OUP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain TFAM-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster TFAM

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to TFAM

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS234VJD at ENCODE; https://www.encodeproject.org/ENCBS234VJD/


title: TF ChIP-seq from whole organism (ENCLB807PWM)

description:
https://www.encodeproject.org/experiments/ENCSR552OIV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-sea-2 in L3 larva worms.
experiment encode accession: ENCSR552OIV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR009OQO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB807PWM
size range: 150-350

value: whole organism

value: whole organisms

value: not applicable

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS135QPT at ENCODE; https://www.encodeproject.org/ENCBS135QPT/


title: TF ChIP-seq from whole organism (ENCLB000DVP)

description:
https://www.encodeproject.org/experiments/ENCSR663OQY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing D1046.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR663OQY
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR395YHD
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB000DVP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: L4 larva

value: 50 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS977NUZ at ENCODE; https://www.encodeproject.org/ENCBS977NUZ/


title: Control ChIP-seq from whole organism (ENCLB866TDB)

description:
https://www.encodeproject.org/experiments/ENCSR661MKW/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing flt-1-eGFP fusion proteins.
experiment encode accession: ENCSR661MKW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB866TDB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: early embryonic

value: 1 hour

value: egg bleaching

value: ENCBS203QII at ENCODE; https://www.encodeproject.org/ENCBS203QII/


title: TF ChIP-seq from whole organism (ENCLB961VBY)

description:
https://www.encodeproject.org/experiments/ENCSR661JNV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sea-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR661JNV
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR755KQG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB961VBY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP129 (wgIs129(sea-1::TY1 EGFP 3xFLAG(P000004_E06); unc-119(+));unc-119(ed3)) early embryo (0 hours) using egg bleaching insertion targeting C. elegans sea-1

value: whole organism

value: whole organisms

value: not applicable

value: 0 hour

value: ENCBS862GUT at ENCODE; https://www.encodeproject.org/ENCBS862GUT/


title: TF ChIP-seq from whole organism (ENCLB862ACS)

description:
https://www.encodeproject.org/experiments/ENCSR661JNV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sea-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR661JNV
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR755KQG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB862ACS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS542KBE at ENCODE; https://www.encodeproject.org/ENCBS542KBE/


title: TF ChIP-seq from whole organism (ENCLB210OZH)

description:
https://www.encodeproject.org/experiments/ENCSR549FYY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in late embryonic worms.
experiment encode accession: ENCSR549FYY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR615EJQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB210OZH
size range: 150-350

source_name: Caenorhabditis elegans strain OP305 (unc-119(ed3) III; wgIs305) mixed sex late embryo insertion targeting C. elegans nhr-11

value: pooled male and female

value: late embryonic

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS254EPW at ENCODE; https://www.encodeproject.org/ENCBS254EPW/


title: TF ChIP-seq from whole organism (ENCLB073MAU)

description:
https://www.encodeproject.org/experiments/ENCSR200GOV/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing brk-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR200GOV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR212KSR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB073MAU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain brk-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster brk

value: brk

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to brk

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS694XCB at ENCODE; https://www.encodeproject.org/ENCBS694XCB/


title: TF ChIP-seq from whole organism (ENCLB321HAY)

description:
https://www.encodeproject.org/experiments/ENCSR798FMQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing unc-98-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR798FMQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR435DMG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB321HAY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP85 (wgIs85(unc-98::TY1 EGFP 3xFLAG(P000007_F03); unc-119(+));unc-119(ed3)) L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans unc-98

value: whole organism

value: whole organisms

value: not collected

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS590XNH at ENCODE; https://www.encodeproject.org/ENCBS590XNH/


title: TF ChIP-seq from whole organism (ENCLB843PTD)

description:
https://www.encodeproject.org/experiments/ENCSR467BTP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing scrt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR467BTP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR218CPY
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB843PTD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP802 (wgIs802(scrt-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0089_1F10);unc-119(+));unc-119 (tm4063)) early embryo (2 hours) using egg bleaching insertion targeting C. elegans scrt-1

value: not applicable

value: early embryonic

value: 2 hour

value: egg bleaching

value: ENCBS740CDM at ENCODE; https://www.encodeproject.org/ENCBS740CDM/


title: TF ChIP-seq from whole organism (ENCLB901YVG)

description:
https://www.encodeproject.org/experiments/ENCSR798FMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing unc-98-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR798FMQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR435DMG
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB901YVG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS729KSY at ENCODE; https://www.encodeproject.org/ENCBS729KSY/


title: Control ChIP-seq from whole organism (ENCLB058ZBP)

description:
https://www.encodeproject.org/experiments/ENCSR860DXK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR860DXK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB058ZBP
size range: 150-350

source_name: Caenorhabditis elegans strain OP105 (unc119(ed3);wgIs105(dpl-1::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans dpl-1

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS768YCH at ENCODE; https://www.encodeproject.org/ENCBS768YCH/


title: TF ChIP-seq from whole organism (ENCLB214AMJ)

description:
https://www.encodeproject.org/experiments/ENCSR668MQX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing ceh-91-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR668MQX
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR453NJA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB214AMJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not collected

value: young adult

value: 62.5 hour

value: ENCBS081OEQ at ENCODE; https://www.encodeproject.org/ENCBS081OEQ/


title: TF ChIP-seq from whole organism (ENCLB063JZK)

description:
https://www.encodeproject.org/experiments/ENCSR200GOV/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing brk-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR200GOV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR212KSR
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB063JZK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: brk

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to brk

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS988RCT at ENCODE; https://www.encodeproject.org/ENCBS988RCT/


title: TF ChIP-seq from whole organism (ENCLB028JCL)

description:
https://www.encodeproject.org/experiments/ENCSR467BTP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing scrt-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR467BTP
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR218CPY
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB028JCL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: early embryonic

value: 2 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS894NYP at ENCODE; https://www.encodeproject.org/ENCBS894NYP/


title: Control ChIP-seq from whole organism (ENCLB720DTS)

description:
https://www.encodeproject.org/experiments/ENCSR023XBU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG31388-eGFP fusion proteins.
experiment encode accession: ENCSR023XBU
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB720DTS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG31388-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG31388

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG31388

value: pooled male and female

value: embryonic

value: 0-16 hour

value: ENCBS795WSQ at ENCODE; https://www.encodeproject.org/ENCBS795WSQ/


title: Control ChIP-seq from whole organism (ENCLB989SKV)

description:
https://www.encodeproject.org/experiments/ENCSR462XTA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F37B4.10-eGFP fusion proteins.
experiment encode accession: ENCSR462XTA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB989SKV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP374 (wgIs374(F37B4.10::TY1 EGFP 3xFLAG(P000012_E03);unc-119(+);unc-119(tm4063)) young adult (61 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans F37B4.10

value: not applicable

value: not collected

value: young adult

value: 61 hour

value: L1 larva starved after bleaching

value: ENCBS575XII at ENCODE; https://www.encodeproject.org/ENCBS575XII/


title: TF ChIP-seq from whole organism (ENCLB438RUO)

description:
https://www.encodeproject.org/experiments/ENCSR457INF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-41-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR457INF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR997BAA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB438RUO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12221 (st12221[nhr-41::TY1::EGFP::3xFLAG] IV) L4 larva (48.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans nhr-41

value: L4 larva

value: 48.5 hour

value: Valerie Reinke, Yale

value: ENCBS162BUS at ENCODE; https://www.encodeproject.org/ENCBS162BUS/


title: Control ChIP-seq from whole organism (ENCLB554ZDR)

description:
https://www.encodeproject.org/experiments/ENCSR860DXK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR860DXK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB554ZDR
size range: 150-350

value: whole organism

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS548IKN at ENCODE; https://www.encodeproject.org/ENCBS548IKN/


title: Control ChIP-seq from whole organism (ENCLB099PDG)

description:
https://www.encodeproject.org/experiments/ENCSR292ARO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Smox-eGFP fusion proteins.
experiment encode accession: ENCSR292ARO
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB099PDG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Smox-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Smox

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Smox

value: pooled male and female

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS408AFV at ENCODE; https://www.encodeproject.org/ENCBS408AFV/


title: TF ChIP-seq from whole organism (ENCLB980FUV)

description:
https://www.encodeproject.org/experiments/ENCSR859SHA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NFYA-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR859SHA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR163UWO
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB980FUV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP404 (unc-119(tm4063) III; wgIs404) hermaphrodite late embryo insertion targeting C. elegans nfya-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke

value: ENCBS554ONV at ENCODE; https://www.encodeproject.org/ENCBS554ONV/


title: TF ChIP-seq from whole organism (ENCLB414KIC)

description:
https://www.encodeproject.org/experiments/ENCSR454PPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hmg-1.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR454PPJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR048CGN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB414KIC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12210 (st12210[hmg-1.2::TY1::EGFP::3xFLAG] III) young adult (65 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans hmg-1.2

value: whole organism

value: not collected

value: young adult

value: 65 hour

value: Valerie Reinke, Yale

value: L1 larva starved after bleaching

value: ENCBS731SBK at ENCODE; https://www.encodeproject.org/ENCBS731SBK/


title: TF ChIP-seq from whole organism (ENCLB662KZM)

description:
https://www.encodeproject.org/experiments/ENCSR457INF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing nhr-41-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR457INF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR997BAA
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB662KZM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: L4 larva

value: 48.5 hour

value: ENCBS766SBK at ENCODE; https://www.encodeproject.org/ENCBS766SBK/


title: TF ChIP-seq from whole organism (ENCLB780NHE)

description:
https://www.encodeproject.org/experiments/ENCSR291ZDB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4424-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR291ZDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR656YMX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB780NHE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Drosophila melanogaster strain CG4424-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG4424

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4424

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS177ZUL at ENCODE; https://www.encodeproject.org/ENCBS177ZUL/


title: TF ChIP-seq from whole organism (ENCLB156QOC)

description:
https://www.encodeproject.org/experiments/ENCSR454PPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing hmg-1.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR454PPJ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR048CGN
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB156QOC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not collected

value: young adult

value: Valerie Reinke

value: ENCBS459YUM at ENCODE; https://www.encodeproject.org/ENCBS459YUM/


title: TF ChIP-seq from whole organism (ENCLB193CYM)

description:
https://www.encodeproject.org/experiments/ENCSR859SHA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NFYA-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR859SHA
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR163UWO
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB193CYM
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: ENCBS131XCG at ENCODE; https://www.encodeproject.org/ENCBS131XCG/


title: TF ChIP-seq from whole organism (ENCLB464NNZ)

description:
https://www.encodeproject.org/experiments/ENCSR549FYY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-11 in late embryonic worms.
experiment encode accession: ENCSR549FYY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR615EJQ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB464NNZ
size range: 150-350

value: not applicable

value: pooled male and female

value: Michael Snyder, Stanford

value: CGC

value: ENCBS152YAI at ENCODE; https://www.encodeproject.org/ENCBS152YAI/


title: TF ChIP-seq from whole organism (ENCLB465XIW)

description:
https://www.encodeproject.org/experiments/ENCSR659RAC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing arid-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR659RAC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR821YZO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB465XIW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12194 (st12194[arid-1::TY1::EGFP::3xFLAG] V) L4 larva (47 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans arid-1

value: whole organism

value: L4 larva

value: 47 hour

value: L1 larva starved after bleaching

value: ENCBS228YKZ at ENCODE; https://www.encodeproject.org/ENCBS228YKZ/


title: TF ChIP-seq from whole organism (ENCLB621ADX)

description:
https://www.encodeproject.org/experiments/ENCSR454DCS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR454DCS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR100NPZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB621ADX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12237 (st12237[madf-6::TY1::EGFP::3xFLAG] I) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans madf-6

value: whole organisms

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke

value: ENCBS214JWY at ENCODE; https://www.encodeproject.org/ENCBS214JWY/


title: Control ChIP-seq from whole organism (ENCLB398BHF)

description:
https://www.encodeproject.org/experiments/ENCSR020AAP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG15073-eGFP fusion proteins.
experiment encode accession: ENCSR020AAP
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB398BHF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15073-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG15073

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG15073

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS601ZES at ENCODE; https://www.encodeproject.org/ENCBS601ZES/


title: Control ChIP-seq from whole organism (ENCLB960WKY)

description:
https://www.encodeproject.org/experiments/ENCSR453NJA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-91-eGFP fusion proteins.
experiment encode accession: ENCSR453NJA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB960WKY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12305 (st12305[ceh-91::TY1::EGFP::3xFLAG] III) young adult (62.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ceh-91

value: whole organism

value: not applicable

value: 62.5 hour

value: Valerie Reinke, Yale

value: ENCBS736JRI at ENCODE; https://www.encodeproject.org/ENCBS736JRI/


title: TF ChIP-seq from whole organism (ENCLB439GLC)

description:
https://www.encodeproject.org/experiments/ENCSR659RAC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing arid-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR659RAC
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR821YZO
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB439GLC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: L4 larva

value: 47 hour

value: L1 larva starved after bleaching

value: ENCBS225LEN at ENCODE; https://www.encodeproject.org/ENCBS225LEN/


title: Control ChIP-seq from whole organism (ENCLB568CCV)

description:
https://www.encodeproject.org/experiments/ENCSR957CPI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ztf-29-eGFP fusion proteins.
experiment encode accession: ENCSR957CPI
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB568CCV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12283 (st12283[ztf-29 ::TY1::EGFP::3xFLAG] III) midembryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using CRISPR targeting C. elegans ztf-29

value: not collected

value: midembryonic

value: 0 hour

value: Valerie Reinke

value: egg bleaching

value: ENCBS368DIP at ENCODE; https://www.encodeproject.org/ENCBS368DIP/


title: Control ChIP-seq from whole organism (ENCLB454GHD)

description:
https://www.encodeproject.org/experiments/ENCSR197FZB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG31627-eGFP fusion proteins.
experiment encode accession: ENCSR197FZB
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB454GHD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG31627-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster CG31627

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG31627

value: pooled male and female

value: prepupa

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS814DTZ at ENCODE; https://www.encodeproject.org/ENCBS814DTZ/


title: TF ChIP-seq from whole organism (ENCLB625LCN)

description:
https://www.encodeproject.org/experiments/ENCSR380DXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-77 in L2 larva worms.
experiment encode accession: ENCSR380DXQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR101SVT
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB625LCN
size range: 150-350

source_name: Caenorhabditis elegans strain OP353 (unc-119(tm4063) III; wgIs353) mixed sex L2 larva insertion targeting C. elegans nhr-77

value: whole organism

value: whole organisms

value: not applicable

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS690RPC at ENCODE; https://www.encodeproject.org/ENCBS690RPC/


title: TF ChIP-seq from whole organism (ENCLB179OAQ)

description:
https://www.encodeproject.org/experiments/ENCSR454DCS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing madf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR454DCS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR100NPZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB179OAQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS304BNV at ENCODE; https://www.encodeproject.org/ENCBS304BNV/


title: Control ChIP-seq from whole organism (ENCLB619KCB)

description:
https://www.encodeproject.org/experiments/ENCSR195UPC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing foxo-eGFP fusion proteins.
experiment encode accession: ENCSR195UPC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB619KCB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Drosophila melanogaster strain foxo-MiMIC-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster foxo

value: D. mel line contraining an intronic eGFP exon to create a foxo-GFP fusion gene

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS589WHQ at ENCODE; https://www.encodeproject.org/ENCBS589WHQ/


title: Control ChIP-seq from whole organism (ENCLB017JLH)

description:
https://www.encodeproject.org/experiments/ENCSR954JXW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ctbp-1-eGFP fusion proteins.
experiment encode accession: ENCSR954JXW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB017JLH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12203 (st12203[ctbp-1::TY1::EGFP::3xFLAG] X) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans ctbp-1

value: whole organism

value: whole organisms

value: not applicable

value: L4 larva

value: 48 hour

value: ENCBS766VBV at ENCODE; https://www.encodeproject.org/ENCBS766VBV/


title: Control ChIP-seq from whole organism (ENCLB034ULO)

description:
https://www.encodeproject.org/experiments/ENCSR118IHI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins.
experiment encode accession: ENCSR118IHI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB034ULO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG34406-GFP mixed sex prepupa insertion targeting D. melanogaster CG44002

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG44002

value: prepupa

value: Kevin White

value: ENCBS696EQZ at ENCODE; https://www.encodeproject.org/ENCBS696EQZ/


title: TF ChIP-seq from whole organism (ENCLB204BTB)

description:
https://www.encodeproject.org/experiments/ENCSR380DXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-77 in L2 larva worms.
experiment encode accession: ENCSR380DXQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR101SVT
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB204BTB
size range: 150-350

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS679CON at ENCODE; https://www.encodeproject.org/ENCBS679CON/


title: TF ChIP-seq from whole organism (ENCLB167PBS)

description:
https://www.encodeproject.org/experiments/ENCSR779FXQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y48G9A.11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR779FXQ
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR902WVK
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB167PBS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12291 (st12291[Y48G9A.11::TY1::EGFP::3xFLAG] III) L4 larva (47.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y48G9A.11

value: not collected

value: 47.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS473QYD at ENCODE; https://www.encodeproject.org/ENCBS473QYD/


title: TF ChIP-seq from whole organism (ENCLB743CYI)

description:
https://www.encodeproject.org/experiments/ENCSR857GIP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against LSY-2 in L4 larva worms.
experiment encode accession: ENCSR857GIP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR840BQX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB743CYI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP367 (unc-119(tm4063) III; wgIs367) mixed sex L4 larva insertion targeting C. elegans lsy-2

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSY-2

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder

value: ENCBS758AOY at ENCODE; https://www.encodeproject.org/ENCBS758AOY/


title: TF ChIP-seq from whole organism (ENCLB906RDT)

description:
https://www.encodeproject.org/experiments/ENCSR857GIP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against LSY-2 in L4 larva worms.
experiment encode accession: ENCSR857GIP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR840BQX
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB906RDT
fragmentation methods: sonication (generic microtip)

value: Michael Snyder, Stanford

value: ENCBS855NRJ at ENCODE; https://www.encodeproject.org/ENCBS855NRJ/


title: Control ChIP-seq from whole organism (ENCLB748UHD)

description:
https://www.encodeproject.org/experiments/ENCSR776AID/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing zfp-3-eGFP fusion proteins.
experiment encode accession: ENCSR776AID
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB748UHD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12271 (st12271[zfp-3::TY1::EGFP::3xFLAG] X) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans zfp-3

value: not collected

value: 48 hour

value: ENCBS715ZXV at ENCODE; https://www.encodeproject.org/ENCBS715ZXV/


title: Control ChIP-seq from whole organism (ENCLB210GBX)

description:
https://www.encodeproject.org/experiments/ENCSR118DLX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing luna-eGFP fusion proteins.
experiment encode accession: ENCSR118DLX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB210GBX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain luna-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster luna

value: D. mel line contraining an intronic eGFP exon to create a luna-GFP fusion gene

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS649FWN at ENCODE; https://www.encodeproject.org/ENCBS649FWN/


title: Control ChIP-seq from whole organism (ENCLB700SNU)

description:
https://www.encodeproject.org/experiments/ENCSR652SHU/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing aptf-2-eGFP fusion proteins.
experiment encode accession: ENCSR652SHU
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2022-12-19
lab: Valerie Reinke, Yale
library encode accession: ENCLB700SNU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12304 (st12304[aptf-2::TY1::EGFP::3xFLAG] IV) young adult (61.5 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans aptf-2

value: whole organism

value: whole organisms

value: not applicable

value: young adult

value: 61.5 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS744WTX at ENCODE; https://www.encodeproject.org/ENCBS744WTX/


title: TF ChIP-seq from whole organism (ENCLB651WDN)

description:
https://www.encodeproject.org/experiments/ENCSR450BXS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450BXS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR154OOX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB651WDN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RJP5357 (rp169(dmd-9::GFP::AID::TEV::3xFLAG) IV) L4 larva (48 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans dmd-9

value: not collected

value: L4 larva

value: 48 hour

value: ENCBS992FZW at ENCODE; https://www.encodeproject.org/ENCBS992FZW/


title: TF ChIP-seq from whole organism (ENCLB270NQQ)

description:
https://www.encodeproject.org/experiments/ENCSR378TOV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-C34F6.9 in L2 larva worms.
experiment encode accession: ENCSR378TOV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR454PLL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB270NQQ
size range: 150-350

source_name: Caenorhabditis elegans strain OP324 (unc-119(ed3) III; wgIs324) mixed sex L2 larva insertion targeting C. elegans C34F6.9

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS671CHE at ENCODE; https://www.encodeproject.org/ENCBS671CHE/


title: TF ChIP-seq from whole organism (ENCLB476ZIQ)

description:
https://www.encodeproject.org/experiments/ENCSR378TOV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-C34F6.9 in L2 larva worms.
experiment encode accession: ENCSR378TOV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR454PLL
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB476ZIQ
size range: 150-350

value: whole organism

value: whole organisms

value: not applicable

value: ENCBS140QWY at ENCODE; https://www.encodeproject.org/ENCBS140QWY/


title: Control ChIP-seq from whole organism (ENCLB604BND)

description:
https://www.encodeproject.org/experiments/ENCSR378JHP/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in late embryonic worms.
experiment encode accession: ENCSR378JHP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB604BND
size range: 150-350

source_name: Caenorhabditis elegans strain OP500 (unc-119(tm4063) III; wgIs500) mixed sex late embryo insertion targeting C. elegans pros-1

value: late embryonic

value: ENCBS760OTU at ENCODE; https://www.encodeproject.org/ENCBS760OTU/


title: TF ChIP-seq from whole organism (ENCLB416IFE)

description:
https://www.encodeproject.org/experiments/ENCSR450BXS/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing dmd-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450BXS
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR154OOX
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB416IFE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS633URT at ENCODE; https://www.encodeproject.org/ENCBS633URT/


title: Control ChIP-seq from whole organism (ENCLB823OJC)

description:
https://www.encodeproject.org/experiments/ENCSR111CQR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG8944-eGFP fusion proteins.
experiment encode accession: ENCSR111CQR
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB823OJC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8944-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG8944

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8944

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS514RMT at ENCODE; https://www.encodeproject.org/ENCBS514RMT/


title: TF ChIP-seq from whole organism (ENCLB331MLX)

description:
https://www.encodeproject.org/experiments/ENCSR651YFM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y67H2A.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR651YFM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR085XBF
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB331MLX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12295 (st12295[Y67H2A.10::TY1::EGFP::3xFLAG] IV) young adult (63 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans Y67H2A.10

value: not collected

value: young adult

value: 63 hour

value: ENCBS800KCY at ENCODE; https://www.encodeproject.org/ENCBS800KCY/


title: TF ChIP-seq from whole organism (ENCLB463JTE)

description:
https://www.encodeproject.org/experiments/ENCSR854NDK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against MDL-1 in L2 larva worms.
experiment encode accession: ENCSR854NDK
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR347VEI
encode release date: 2017-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB463JTE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L2 larva insertion targeting C. elegans mdl-1

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1

value: pooled male and female

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS764OQU at ENCODE; https://www.encodeproject.org/ENCBS764OQU/


title: Control ChIP-seq from whole organism (ENCLB278MMI)

description:
https://www.encodeproject.org/experiments/ENCSR112EFN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Sox102F-eGFP fusion proteins.
experiment encode accession: ENCSR112EFN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB278MMI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox102F-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Sox102F

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox102F

value: prepupa

value: Kevin White, UChicago

value: white prepupa

value: ENCBS072FKM at ENCODE; https://www.encodeproject.org/ENCBS072FKM/


title: Control ChIP-seq from whole organism (ENCLB663PAW)

description:
https://www.encodeproject.org/experiments/ENCSR378JHP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in late embryonic worms.
experiment encode accession: ENCSR378JHP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB663PAW
size range: 150-350

value: late embryonic

value: CGC

value: ENCBS010OZY at ENCODE; https://www.encodeproject.org/ENCBS010OZY/


title: TF ChIP-seq from whole organism (ENCLB338QYD)

description:
https://www.encodeproject.org/experiments/ENCSR651YFM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing Y67H2A.10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR651YFM
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR085XBF
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB338QYD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not collected

value: young adult

value: 63 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS617KMZ at ENCODE; https://www.encodeproject.org/ENCBS617KMZ/


title: Control ChIP-seq from whole organism (ENCLB124MQI)

description:
https://www.encodeproject.org/experiments/ENCSR008VTA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dl-eGFP fusion proteins.
experiment encode accession: ENCSR008VTA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-09-28
lab: Kevin White, UChicago
library encode accession: ENCLB124MQI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-275

source_name: Drosophila melanogaster strain dl-small-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dl

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dl-RC

value: pooled male and female

value: wandering third instar larva

value: unknown

value: Kevin White

value: ENCBS719VLU at ENCODE; https://www.encodeproject.org/ENCBS719VLU/


title: TF ChIP-seq from whole organism (ENCLB610NYJ)

description:
https://www.encodeproject.org/experiments/ENCSR942VBL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing attf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR942VBL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR120WLZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB610NYJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain RW12231 (st12231[attf-6::TY1::EGFP::3xFLAG] I) young adult (64 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans attf-6

value: 64 hour

value: ENCBS547OWJ at ENCODE; https://www.encodeproject.org/ENCBS547OWJ/


title: TF ChIP-seq from whole organism (ENCLB925OFY)

description:
https://www.encodeproject.org/experiments/ENCSR007HUT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cyc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR007HUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR807ABQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB925OFY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cyc-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster cyc

value: cyc

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cyc

value: prepupa

value: Kevin White, UChicago

value: white prepupa

value: ENCBS859CWX at ENCODE; https://www.encodeproject.org/ENCBS859CWX/


title: TF ChIP-seq from whole organism (ENCLB350NOE)

description:
https://www.encodeproject.org/experiments/ENCSR007HUT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cyc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR007HUT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR807ABQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB350NOE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS164XLC at ENCODE; https://www.encodeproject.org/ENCBS164XLC/


title: TF ChIP-seq from whole organism (ENCLB603YQW)

description:
https://www.encodeproject.org/experiments/ENCSR942VBL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing attf-6-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR942VBL
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR120WLZ
encode release date: 2022-11-01
lab: Valerie Reinke, Yale
library encode accession: ENCLB603YQW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not collected

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS113IEX at ENCODE; https://www.encodeproject.org/ENCBS113IEX/