title: TF ChIP-seq from whole organism (ENCLB249QEY)

description:
https://www.encodeproject.org/experiments/ENCSR689UBU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing REC-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR689UBU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR385LHQ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB249QEY
fragmentation methods: sonication (generic microtip)

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to REC-8

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS517IFM at ENCODE; https://www.encodeproject.org/ENCBS517IFM/


title: Control ChIP-seq from whole organism (ENCLB195TVS)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR014QVQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR014QVQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB195TVS
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain YL448 (unc-119(ed3)III; vrIs83 [pGES-1::DPL-1::GFP FLAG: DPL-1 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans dpl-1

extract_protocol: not provided

value: whole organisms

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DPL-1

tag: Sex

value: pooled male and female

tag: dev stage

value: L1 larva

tag: age

value: unknown

tag: lab

value: Michael Snyder, Stanford

tag: source

value: Michael Snyder

tag: link

value: ENCBS339GBW at ENCODE; https://www.encodeproject.org/ENCBS339GBW/


title: TF ChIP-seq from whole organism (ENCLB026GVY)

description:
https://www.encodeproject.org/experiments/ENCSR548OPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing WAGO-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR548OPZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR739RAY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB026GVY
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL557 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hrde-1

tag: antibody

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to WAGO-9

tag: worm synchronization stage

tag: post synchronization time

tag: post synchronization time units

value: ENCBS976THX at ENCODE; https://www.encodeproject.org/ENCBS976THX/


title: Control ChIP-seq from whole organism (ENCLB503YFL)

description:
https://www.encodeproject.org/experiments/ENCSR409KGR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG3032-eGFP fusion proteins.
experiment encode accession: ENCSR409KGR
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-07-02
lab: Kevin White, UChicago
library encode accession: ENCLB503YFL
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG3032 mixed sex prepupa (24 hours) insertion targeting D. melanogaster CG3032

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3032

value: prepupa

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS200BJW at ENCODE; https://www.encodeproject.org/ENCBS200BJW/


title: Control ChIP-seq from whole organism (ENCLB483LSB)

description:
https://www.encodeproject.org/experiments/ENCSR411JGG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG6254-eGFP fusion proteins.
experiment encode accession: ENCSR411JGG
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB483LSB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6254-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG6254

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6254

value: embryonic

value: 0-14 hour

value: ENCBS785NQU at ENCODE; https://www.encodeproject.org/ENCBS785NQU/


title: TF ChIP-seq from whole organism (ENCLB953SIO)

description:
https://www.encodeproject.org/experiments/ENCSR032HMJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(z)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032HMJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR818AKL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB953SIO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(z)-GFP mixed sex prepupa insertion targeting D. melanogaster E(z)

value: E(z)

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(z)

value: pooled male and female

value: unknown

value: ENCBS297RZD at ENCODE; https://www.encodeproject.org/ENCBS297RZD/


title: Control ChIP-seq from whole organism (ENCLB854AWM)

description:
https://www.encodeproject.org/experiments/ENCSR132NXK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hmx-eGFP fusion proteins.
experiment encode accession: ENCSR132NXK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB854AWM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hmx-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hmx

value: whole organism

value: D. mel line contraining an intronic eGFP exon to create a Hmx-GFP fusion gene

value: 0-24 hour

value: Hugo Bellen

value: ENCBS171QMC at ENCODE; https://www.encodeproject.org/ENCBS171QMC/


title: TF ChIP-seq from whole organism (ENCLB106HMK)

description:
https://www.encodeproject.org/experiments/ENCSR904GFO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Clk-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR904GFO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR157XVL
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB106HMK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Clk-GFP male adult insertion targeting D. melanogaster Clk

value: Clk

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Clk

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS966FMQ at ENCODE; https://www.encodeproject.org/ENCBS966FMQ/


title: Control ChIP-seq from whole organism (ENCLB266ZST)

description:
https://www.encodeproject.org/experiments/ENCSR852KZF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-15-eGFP fusion proteins.
experiment encode accession: ENCSR852KZF
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB266ZST
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP566 (unc-119(tm4063) III; wgIs566) hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans hlh-15

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-15

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS534KLI at ENCODE; https://www.encodeproject.org/ENCBS534KLI/


title: TF ChIP-seq from whole organism (ENCLB918IYY)

description:
https://www.encodeproject.org/experiments/ENCSR303EBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Lpt-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR303EBD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR139RMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB918IYY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Lpt-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Lpt

value: Lpt

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Lpt

value: pooled male and female

value: prepupa

value: unknown

tag: fly synchronization stage

value: white prepupa

value: ENCBS392BRQ at ENCODE; https://www.encodeproject.org/ENCBS392BRQ/


title: Control ChIP-seq from whole organism (ENCLB804RRC)

description:
https://www.encodeproject.org/experiments/ENCSR543SCG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing UNC-3-eGFP fusion proteins.
experiment encode accession: ENCSR543SCG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB804RRC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP578 (unc-119(tm4063) III; wgIs578) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans unc-3

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-3

value: ENCBS949BOL at ENCODE; https://www.encodeproject.org/ENCBS949BOL/


title: TF ChIP-seq from whole organism (ENCLB474XIU)

description:
https://www.encodeproject.org/experiments/ENCSR303EBD/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Lpt-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR303EBD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR139RMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB474XIU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White, UChicago

value: Kevin White

value: ENCBS461IYM at ENCODE; https://www.encodeproject.org/ENCBS461IYM/


title: Control ChIP-seq from whole organism (ENCLB836CXV)

description:
https://www.encodeproject.org/experiments/ENCSR013ISV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR013ISV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB836CXV
size range: 150-350

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L1 larva insertion targeting C. elegans elt-3

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS855GTV at ENCODE; https://www.encodeproject.org/ENCBS855GTV/


title: TF ChIP-seq from whole organism (ENCLB210KMW)

description:
https://www.encodeproject.org/experiments/ENCSR904GFO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Clk-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR904GFO
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR157XVL
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB210KMW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Clk

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Clk

value: male

value: adult

value: ENCBS288JDD at ENCODE; https://www.encodeproject.org/ENCBS288JDD/


title: TF ChIP-seq from whole organism (ENCLB907UXU)

description:
https://www.encodeproject.org/experiments/ENCSR303EBD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Lpt-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR303EBD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR139RMN
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB907UXU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Lpt

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Lpt

value: pooled male and female

value: prepupa

value: unknown

value: white prepupa

value: ENCBS925HZC at ENCODE; https://www.encodeproject.org/ENCBS925HZC/


title: Control ChIP-seq from whole organism (ENCLB932RRI)

description:
https://www.encodeproject.org/experiments/ENCSR135XHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Eip75B-eGFP fusion proteins.
experiment encode accession: ENCSR135XHQ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB932RRI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Eip75B-MiMIC-GFP mixed sex prepupa insertion targeting D. melanogaster Eip75B

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a Eip75B-GFP fusion gene

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS165LUO at ENCODE; https://www.encodeproject.org/ENCBS165LUO/


title: TF ChIP-seq from whole organism (ENCLB725EXZ)

description:
https://www.encodeproject.org/experiments/ENCSR900TNL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cwo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR900TNL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR929IRK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB725EXZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cwo-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster cwo

value: cwo

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cwo

value: embryonic

value: Kevin White

value: ENCBS655IKQ at ENCODE; https://www.encodeproject.org/ENCBS655IKQ/


title: TF ChIP-seq from whole organism (ENCLB610IYU)

description:
https://www.encodeproject.org/experiments/ENCSR900TNL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cwo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR900TNL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR929IRK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB610IYU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS472PKF at ENCODE; https://www.encodeproject.org/ENCBS472PKF/


title: Control ChIP-seq from whole organism (ENCLB614YZZ)

description:
https://www.encodeproject.org/experiments/ENCSR296KEA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13624-eGFP fusion proteins.
experiment encode accession: ENCSR296KEA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB614YZZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13624-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster REPTOR

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13624

value: pooled male and female

value: 0-24 hour

value: ENCBS486DEX at ENCODE; https://www.encodeproject.org/ENCBS486DEX/


title: TF ChIP-seq from whole organism (ENCLB032CKM)

description:
https://www.encodeproject.org/experiments/ENCSR012BJM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-skn-1 in L1 larva worms.
experiment encode accession: ENCSR012BJM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR748QRA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB032CKM
size range: 150-350

source_name: Caenorhabditis elegans strain OP178 (unc-119(ed3) III; wgIs178) mixed sex L1 larva insertion targeting C. elegans skn-1

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS394RYI at ENCODE; https://www.encodeproject.org/ENCBS394RYI/


title: TF ChIP-seq from whole organism (ENCLB534EOJ)

description:
https://www.encodeproject.org/experiments/ENCSR032HMJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(z)-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR032HMJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR818AKL
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB534EOJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: E(z)

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(z)

value: prepupa

value: Kevin White, UChicago

value: ENCBS723PKM at ENCODE; https://www.encodeproject.org/ENCBS723PKM/


title: TF ChIP-seq from whole organism (ENCLB243PMS)

description:
https://www.encodeproject.org/experiments/ENCSR543FLP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZK185.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR543FLP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR647AIG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB243PMS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP474 (unc-119(tm4063) III; wgIs474) hermaphrodite young adult 56.25 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ZK185.1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZK185.1

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS054KFI at ENCODE; https://www.encodeproject.org/ENCBS054KFI/


title: TF ChIP-seq from whole organism (ENCLB562WOS)

description:
https://www.encodeproject.org/experiments/ENCSR543FLP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZK185.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR543FLP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR647AIG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB562WOS
fragmentation methods: sonication (generic microtip)

value: not applicable

value: unknown

value: ENCBS328BWG at ENCODE; https://www.encodeproject.org/ENCBS328BWG/


title: TF ChIP-seq from whole organism (ENCLB037CPU)

description:
https://www.encodeproject.org/experiments/ENCSR012BJM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-skn-1 in L1 larva worms.
experiment encode accession: ENCSR012BJM
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR748QRA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB037CPU
size range: 150-350

value: whole organism

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS221QBO at ENCODE; https://www.encodeproject.org/ENCBS221QBO/


title: Control ChIP-seq from whole organism (ENCLB491UUJ)

description:
https://www.encodeproject.org/experiments/ENCSR014QVQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR014QVQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB491UUJ
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DPL-1

value: Michael Snyder

value: ENCBS277OXM at ENCODE; https://www.encodeproject.org/ENCBS277OXM/


title: TF ChIP-seq from whole organism (ENCLB857PQN)

description:
https://www.encodeproject.org/experiments/ENCSR844VCY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-48-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR844VCY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR106DTT
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB857PQN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP631 (unc-119(tm4063) III; wgIs631) mixed sex late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-48

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-48

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS468IPP at ENCODE; https://www.encodeproject.org/ENCBS468IPP/


title: Control ChIP-seq from whole organism (ENCLB536FZT)

description:
https://www.encodeproject.org/experiments/ENCSR288FNX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR288FNX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB536FZT
size range: 150-350

source_name: Caenorhabditis elegans strain OP337 (unc119(ed3);wgIs377(fkh-10::TY1 EGFP FLAG;unc119)) mixed sex L4 larva insertion targeting C. elegans fkh-10

value: not applicable

value: L4 larva

value: unknown

value: ENCBS785OTU at ENCODE; https://www.encodeproject.org/ENCBS785OTU/


title: Control ChIP-seq from whole organism (ENCLB362KGX)

description:
https://www.encodeproject.org/experiments/ENCSR288FNX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR288FNX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB362KGX
size range: 150-350

value: whole organism

value: pooled male and female

value: Michael Snyder, Stanford

value: ENCBS737RJL at ENCODE; https://www.encodeproject.org/ENCBS737RJL/


title: TF ChIP-seq from whole organism (ENCLB079NTF)

description:
https://www.encodeproject.org/experiments/ENCSR548OPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing WAGO-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR548OPZ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR739RAY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB079NTF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL557 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hrde-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to WAGO-9

value: hermaphrodite

value: young adult

value: L1 larva starved after bleaching

value: hour

value: ENCBS527YFZ at ENCODE; https://www.encodeproject.org/ENCBS527YFZ/


title: Control ChIP-seq from whole organism (ENCLB391XOE)

description:
https://www.encodeproject.org/experiments/ENCSR402PIT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG13296-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR402PIT
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB391XOE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13296-GFP mixed sex embryo (6-18 hours) insertion targeting D. melanogaster CG13296

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13296

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS891KQO at ENCODE; https://www.encodeproject.org/ENCBS891KQO/


title: Control ChIP-seq from whole organism (ENCLB349CPZ)

description:
https://www.encodeproject.org/experiments/ENCSR013ISV/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR013ISV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB349CPZ
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L1 larva

value: unknown

value: Michael Snyder

value: ENCBS914OKH at ENCODE; https://www.encodeproject.org/ENCBS914OKH/


title: TF ChIP-seq from whole organism (ENCLB804CVL)

description:
https://www.encodeproject.org/experiments/ENCSR296ASC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Neu2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR296ASC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR185XQI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB804CVL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Neu2-GFP mixed sex embryo (2-4 hours) insertion targeting D. melanogaster Neu2

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Neu2

value: pooled male and female

value: ENCBS993QUB at ENCODE; https://www.encodeproject.org/ENCBS993QUB/


title: Control ChIP-seq from whole organism (ENCLB411WEU)

description:
https://www.encodeproject.org/experiments/ENCSR402HVI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG18011-eGFP fusion proteins.
experiment encode accession: ENCSR402HVI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB411WEU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG18011-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG18011

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18011

value: 0-24 hour

value: ENCBS239JEL at ENCODE; https://www.encodeproject.org/ENCBS239JEL/


title: TF ChIP-seq from whole organism (ENCLB156QHK)

description:
https://www.encodeproject.org/experiments/ENCSR296ASC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Neu2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR296ASC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR185XQI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB156QHK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: embryonic

value: Kevin White, UChicago

value: ENCBS234HGH at ENCODE; https://www.encodeproject.org/ENCBS234HGH/


title: TF ChIP-seq from whole organism (ENCLB492BVI)

description:
https://www.encodeproject.org/experiments/ENCSR296ASC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Neu2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR296ASC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR185XQI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB492BVI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Kevin White

value: ENCBS931UZP at ENCODE; https://www.encodeproject.org/ENCBS931UZP/


title: TF ChIP-seq from whole organism (ENCLB444FAM)

description:
https://www.encodeproject.org/experiments/ENCSR536VXP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing TBX-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR536VXP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR939ISJ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB444FAM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP311 hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans tbx-7

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-7

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS303TUE at ENCODE; https://www.encodeproject.org/ENCBS303TUE/


title: TF ChIP-seq from whole organism (ENCLB883PBX)

description:
https://www.encodeproject.org/experiments/ENCSR900SLE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dmrt93B-eGFP fusion proteins.
experiment encode accession: ENCSR900SLE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR763WTN
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB883PBX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain dmrt93B-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster dmrt93B

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to dmrt93B

value: pooled male and female

value: wandering third instar larva

value: ENCBS563ZIT at ENCODE; https://www.encodeproject.org/ENCBS563ZIT/


title: TF ChIP-seq from whole organism (ENCLB208PZC)

description:
https://www.encodeproject.org/experiments/ENCSR536VXP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing TBX-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR536VXP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR939ISJ
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB208PZC
fragmentation methods: sonication (generic microtip)

value: not applicable

value: ENCBS716IGY at ENCODE; https://www.encodeproject.org/ENCBS716IGY/


title: Control ChIP-seq from whole organism (ENCLB252FGL)

description:
https://www.encodeproject.org/experiments/ENCSR196QUU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR196QUU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB252FGL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP75 (unc-119(ed3) III; wgIs75) mixed sex L3 larva insertion targeting C. elegans elt-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS735AQN at ENCODE; https://www.encodeproject.org/ENCBS735AQN/


title: TF ChIP-seq from whole organism (ENCLB895CZF)

description:
https://www.encodeproject.org/experiments/ENCSR900SLE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing dmrt93B-eGFP fusion proteins.
experiment encode accession: ENCSR900SLE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR763WTN
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB895CZF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS234UUC at ENCODE; https://www.encodeproject.org/ENCBS234UUC/


title: TF ChIP-seq from whole organism (ENCLB700PUG)

description:
https://www.encodeproject.org/experiments/ENCSR295GRP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR295GRP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR641HBT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB700PUG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster br

value: br

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RE

value: ENCBS925VJO at ENCODE; https://www.encodeproject.org/ENCBS925VJO/


title: TF ChIP-seq from whole organism (ENCLB332TGG)

description:
https://www.encodeproject.org/experiments/ENCSR374HBD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HND-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR374HBD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR937YBQ
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB332TGG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP573 (unc-119(tm4063) III; wgIs573) mixed sex early embryo 1.5 hours post synchronization using egg bleaching insertion targeting C. elegans hnd-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HND-1

value: pooled male and female

value: early embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS206MPC at ENCODE; https://www.encodeproject.org/ENCBS206MPC/


title: Control ChIP-seq from whole organism (ENCLB747FKH)

description:
https://www.encodeproject.org/experiments/ENCSR195VRA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR195VRA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB747FKH
size range: 150-350

source_name: Caenorhabditis elegans strain OP18 (unc-119(ed3) III; wgIs18) mixed sex L1 larva insertion targeting C. elegans lin-39

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS235TSW at ENCODE; https://www.encodeproject.org/ENCBS235TSW/


title: TF ChIP-seq from whole organism (ENCLB388FVS)

description:
https://www.encodeproject.org/experiments/ENCSR709YEU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR709YEU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR782KIM
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB388FVS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2678 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG2678

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2678

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS200JLF at ENCODE; https://www.encodeproject.org/ENCBS200JLF/


title: Control ChIP-seq from whole organism (ENCLB525BTM)

description:
https://www.encodeproject.org/experiments/ENCSR900MVH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR900MVH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB525BTM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain PHDP embryo (10-24 hours) insertion targeting D. melanogaster PHDP

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to PHDP

value: not collected

value: ENCBS309GII at ENCODE; https://www.encodeproject.org/ENCBS309GII/


title: TF ChIP-seq from whole organism (ENCLB804WFF)

description:
https://www.encodeproject.org/experiments/ENCSR374HBD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HND-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR374HBD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR937YBQ
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB804WFF
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HND-1

value: pooled male and female

value: early embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS158RMI at ENCODE; https://www.encodeproject.org/ENCBS158RMI/


title: Control ChIP-seq from whole organism (ENCLB459RVJ)

description:
https://www.encodeproject.org/experiments/ENCSR282QFI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ZFP-2-eGFP fusion proteins.
experiment encode accession: ENCSR282QFI
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB459RVJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP534 (unc-119(tm4063) III; wgIs534) hermaphrodite L4 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans zfp-2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZFP-2

value: hermaphrodite

value: L4 larva

value: unknown

value: L1 larva starved after bleaching

value: ENCBS937UNQ at ENCODE; https://www.encodeproject.org/ENCBS937UNQ/


title: TF ChIP-seq from whole organism (ENCLB832HZA)

description:
https://www.encodeproject.org/experiments/ENCSR295GRP/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR295GRP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR641HBT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB832HZA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: br

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RE

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS873QPK at ENCODE; https://www.encodeproject.org/ENCBS873QPK/


title: Control ChIP-seq from whole organism (ENCLB276IPI)

description:
https://www.encodeproject.org/experiments/ENCSR196QUU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR196QUU
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB276IPI
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-3

value: pooled male and female

value: L3 larva

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS230DLM at ENCODE; https://www.encodeproject.org/ENCBS230DLM/


title: TF ChIP-seq from whole organism (ENCLB018UJK)

description:
https://www.encodeproject.org/experiments/ENCSR900TNL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing cwo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR900TNL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR929IRK
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB018UJK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain cwo-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster cwo

value: cwo

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to cwo

value: embryonic

value: ENCBS240MME at ENCODE; https://www.encodeproject.org/ENCBS240MME/


title: Control ChIP-seq from whole organism (ENCLB995PYB)

description:
https://www.encodeproject.org/experiments/ENCSR287RHD/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR287RHD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB995PYB
size range: 150-350

source_name: Caenorhabditis elegans strain OP239 (unc-119(ed3) III; wgIs239) mixed sex L4 larva insertion targeting C. elegans nhr-10

value: whole organisms

value: L4 larva

value: unknown

value: CGC

value: ENCBS775AZH at ENCODE; https://www.encodeproject.org/ENCBS775AZH/


title: Control ChIP-seq from whole organism (ENCLB023TXN)

description:
https://www.encodeproject.org/experiments/ENCSR130XZA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Rel-eGFP fusion proteins.
experiment encode accession: ENCSR130XZA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB023TXN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Rel-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Rel

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Rel

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS700AJB at ENCODE; https://www.encodeproject.org/ENCBS700AJB/


title: Control ChIP-seq from whole organism (ENCLB938ZBS)

description:
https://www.encodeproject.org/experiments/ENCSR294UCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing lbe-eGFP fusion proteins.
experiment encode accession: ENCSR294UCJ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB938ZBS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain lbe-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster lbe

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to lbe

value: pooled male and female

value: 0-24 hour

value: ENCBS245YKF at ENCODE; https://www.encodeproject.org/ENCBS245YKF/


title: TF ChIP-seq from whole organism (ENCLB222XIV)

description:
https://www.encodeproject.org/experiments/ENCSR266SPL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-71-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR266SPL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR942UFE
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB222XIV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP480 (unc-119(tm4063) III; wgIs480) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-71

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-71

value: hermaphrodite

value: L1 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS139TRV at ENCODE; https://www.encodeproject.org/ENCBS139TRV/


title: Control ChIP-seq from whole organism (ENCLB063YCS)

description:
https://www.encodeproject.org/experiments/ENCSR287RHD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR287RHD
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB063YCS
size range: 150-350

value: whole organisms

value: not applicable

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS478LSI at ENCODE; https://www.encodeproject.org/ENCBS478LSI/


title: Control ChIP-seq from whole organism (ENCLB263VDN)

description:
https://www.encodeproject.org/experiments/ENCSR356KYP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing FKH-6-eGFP fusion proteins.
experiment encode accession: ENCSR356KYP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB263VDN
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP78 (unc-119(ed3) III; wgIs78) hermaphrodite late embryo 5.5 hours post synchronization using egg bleaching insertion targeting C. elegans fkh-6

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-6

value: late embryonic

value: egg bleaching

value: ENCBS040JXM at ENCODE; https://www.encodeproject.org/ENCBS040JXM/


title: TF ChIP-seq from whole organism (ENCLB546TCF)

description:
https://www.encodeproject.org/experiments/ENCSR709YEU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR709YEU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR782KIM
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB546TCF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2678

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS870PCX at ENCODE; https://www.encodeproject.org/ENCBS870PCX/


title: Control ChIP-seq from whole organism (ENCLB511YCN)

description:
https://www.encodeproject.org/experiments/ENCSR707UNX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR707UNX
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB511YCN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox102F-GFP embryo (12-14 hours) insertion targeting D. melanogaster Sox102F

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox102F

value: not collected

value: ENCBS077ZXH at ENCODE; https://www.encodeproject.org/ENCBS077ZXH/


title: TF ChIP-seq from whole organism (ENCLB927FGN)

description:
https://www.encodeproject.org/experiments/ENCSR709YEU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR709YEU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR782KIM
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB927FGN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS931SEY at ENCODE; https://www.encodeproject.org/ENCBS931SEY/


title: TF ChIP-seq from whole organism (ENCLB638HBD)

description:
https://www.encodeproject.org/experiments/ENCSR266SPL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-71-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR266SPL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR942UFE
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB638HBD
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-71

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS099JUP at ENCODE; https://www.encodeproject.org/ENCBS099JUP/


title: TF ChIP-seq from whole organism (ENCLB855FHQ)

description:
https://www.encodeproject.org/experiments/ENCSR021FJA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing NK7.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR021FJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR195OCT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB855FHQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain NK7.1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster NK7.1

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NK7.1

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS073JOT at ENCODE; https://www.encodeproject.org/ENCBS073JOT/


title: Control ChIP-seq from whole organism (ENCLB322FQN)

description:
https://www.encodeproject.org/experiments/ENCSR195VRA/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR195VRA
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB322FQN
size range: 150-350

value: whole organisms

value: not applicable

value: Michael Snyder, Stanford

value: CGC

value: ENCBS524WTO at ENCODE; https://www.encodeproject.org/ENCBS524WTO/


title: TF ChIP-seq from whole organism (ENCLB798DPA)

description:
https://www.encodeproject.org/experiments/ENCSR119ZYX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in 4 day young adult worms.
experiment encode accession: ENCSR119ZYX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR758JFY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB798DPA
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex young adult (4 days) insertion targeting C. elegans unc-62

value: young adult

value: 4 day

value: ENCBS878HNM at ENCODE; https://www.encodeproject.org/ENCBS878HNM/


title: TF ChIP-seq from whole organism (ENCLB477IWN)

description:
https://www.encodeproject.org/experiments/ENCSR119ZYX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in 4 day young adult worms.
experiment encode accession: ENCSR119ZYX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR758JFY
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB477IWN
size range: 150-350

value: ENCBS232YNZ at ENCODE; https://www.encodeproject.org/ENCBS232YNZ/


title: TF ChIP-seq from whole organism (ENCLB820EIO)

description:
https://www.encodeproject.org/experiments/ENCSR021FJA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing NK7.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR021FJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR195OCT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB820EIO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS249MHF at ENCODE; https://www.encodeproject.org/ENCBS249MHF/


title: TF ChIP-seq from whole organism (ENCLB952RJJ)

description:
https://www.encodeproject.org/experiments/ENCSR258OFT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIR-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR258OFT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR829OFH
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB952RJJ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP312 (unc-119(ed3) III; wgIs312) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans lir-3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIR-3

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS690AVJ at ENCODE; https://www.encodeproject.org/ENCBS690AVJ/


title: TF ChIP-seq from whole organism (ENCLB371FUM)

description:
https://www.encodeproject.org/experiments/ENCSR894GQA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR894GQA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR125WOY
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB371FUM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain D-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster D

value: D

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS243ZAA at ENCODE; https://www.encodeproject.org/ENCBS243ZAA/


title: TF ChIP-seq from whole organism (ENCLB350BKB)

description:
https://www.encodeproject.org/experiments/ENCSR021FJA/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing NK7.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR021FJA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR195OCT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB350BKB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to NK7.1

value: 0-24 hour

value: ENCBS670TJM at ENCODE; https://www.encodeproject.org/ENCBS670TJM/


title: TF ChIP-seq from whole organism (ENCLB602LRG)

description:
https://www.encodeproject.org/experiments/ENCSR258OFT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing LIR-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR258OFT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR829OFH
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB602LRG
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIR-3

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS238JBN at ENCODE; https://www.encodeproject.org/ENCBS238JBN/


title: TF ChIP-seq from whole organism (ENCLB350DOB)

description:
https://www.encodeproject.org/experiments/ENCSR295GRP/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR295GRP
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR641HBT
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB350DOB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster br

value: br

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to br-RE

value: pooled male and female

value: wandering third instar larva

value: ENCBS610GTT at ENCODE; https://www.encodeproject.org/ENCBS610GTT/


title: Control ChIP-seq from whole organism (ENCLB280MNO)

description:
https://www.encodeproject.org/experiments/ENCSR116MEY/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR116MEY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB280MNO
size range: 150-350

source_name: Caenorhabditis elegans strain OP49 (unc119(ed3);wgIs49(lin-13::TY1 EGFP FLAG;unc119)) mixed sex L2 larva insertion targeting C. elegans lin-13

value: whole organism

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS501VYS at ENCODE; https://www.encodeproject.org/ENCBS501VYS/


title: Control ChIP-seq from whole organism (ENCLB866VVJ)

description:
https://www.encodeproject.org/experiments/ENCSR020BSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing sage-eGFP fusion proteins.
experiment encode accession: ENCSR020BSJ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB866VVJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain sage-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster sage

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to sage

value: unknown

value: Kevin White, UChicago

value: Kevin White

value: ENCBS585VPB at ENCODE; https://www.encodeproject.org/ENCBS585VPB/


title: TF ChIP-seq from whole organism (ENCLB204LFJ)

description:
https://www.encodeproject.org/experiments/ENCSR894GQA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR894GQA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR125WOY
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB204LFJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: D

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to D

value: embryonic

value: 0-14 hour

value: ENCBS660QJS at ENCODE; https://www.encodeproject.org/ENCBS660QJS/


title: TF ChIP-seq from whole organism (ENCLB593QJF)

description:
https://www.encodeproject.org/experiments/ENCSR894GQA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing D-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR894GQA
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR125WOY
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB593QJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: pooled male and female

value: ENCBS672FNS at ENCODE; https://www.encodeproject.org/ENCBS672FNS/


title: TF ChIP-seq from whole organism (ENCLB903STI)

description:
https://www.encodeproject.org/experiments/ENCSR256CRR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SPR-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR256CRR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR616DAV
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB903STI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP521 (unc-119(tm4063) III; wgIs521) hermaphrodite L4 larva 50 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans spr-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SPR-1

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS959QHX at ENCODE; https://www.encodeproject.org/ENCBS959QHX/


title: Control ChIP-seq from whole organism (ENCLB166XMW)

description:
https://www.encodeproject.org/experiments/ENCSR117DIE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR117DIE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB166XMW
size range: 150-350

source_name: Caenorhabditis elegans strain OP179 (unc-119(ed3) III; wgIs179) mixed sex L1 larva insertion targeting C. elegans snpc-4

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS028XVH at ENCODE; https://www.encodeproject.org/ENCBS028XVH/


title: Control ChIP-seq from whole organism (ENCLB034TDP)

description:
https://www.encodeproject.org/experiments/ENCSR116BMC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NFYA-1-eGFP fusion proteins.
experiment encode accession: ENCSR116BMC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB034TDP
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP404 (unc-119(tm4063) III; wgIs404) hermaphrodite young adult insertion targeting C. elegans nfya-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: young adult

value: ENCBS297QTD at ENCODE; https://www.encodeproject.org/ENCBS297QTD/


title: TF ChIP-seq from whole organism (ENCLB916EEP)

description:
https://www.encodeproject.org/experiments/ENCSR291KUB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Rel-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR291KUB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR130XZA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB916EEP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Rel

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Rel

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: Kevin White

value: ENCBS853AJH at ENCODE; https://www.encodeproject.org/ENCBS853AJH/


title: TF ChIP-seq from whole organism (ENCLB146SRJ)

description:
https://www.encodeproject.org/experiments/ENCSR291KUB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Rel-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR291KUB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR130XZA
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB146SRJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: unknown

value: ENCBS079KXG at ENCODE; https://www.encodeproject.org/ENCBS079KXG/


title: TF ChIP-seq from whole organism (ENCLB652FIE)

description:
https://www.encodeproject.org/experiments/ENCSR291ZDB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4424-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR291ZDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR656YMX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB652FIE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Drosophila melanogaster strain CG4424-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG4424

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4424

value: embryonic

value: 0-16 hour

value: ENCBS630VWY at ENCODE; https://www.encodeproject.org/ENCBS630VWY/


title: TF ChIP-seq from whole organism (ENCLB273VPK)

description:
https://www.encodeproject.org/experiments/ENCSR252OVI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR252OVI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR291MSY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB273VPK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP533 (unc-119(tm4063) III; wgIs533) hermaphrodite late embryo 3 hours post synchronization using egg bleaching insertion targeting C. elegans ceh-18

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-18

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS520NQU at ENCODE; https://www.encodeproject.org/ENCBS520NQU/


title: TF ChIP-seq from whole organism (ENCLB722IQL)

description:
https://www.encodeproject.org/experiments/ENCSR893CTZ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ss-RB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR893CTZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR054LVI
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB722IQL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ss-GFP mixed sex prepupa (24 hours) insertion targeting D. melanogaster ss

value: ss

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ss-RB

value: pooled male and female

value: prepupa

value: 24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS575NOH at ENCODE; https://www.encodeproject.org/ENCBS575NOH/


title: Control ChIP-seq from whole organism (ENCLB964IFT)

description:
https://www.encodeproject.org/experiments/ENCSR117DIE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR117DIE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB964IFT
size range: 150-350

value: whole organisms

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS679YZS at ENCODE; https://www.encodeproject.org/ENCBS679YZS/


title: TF ChIP-seq from whole organism (ENCLB389BOB)

description:
https://www.encodeproject.org/experiments/ENCSR256CRR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SPR-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR256CRR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR616DAV
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB389BOB
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SPR-1

value: hermaphrodite

value: L4 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS193MSR at ENCODE; https://www.encodeproject.org/ENCBS193MSR/


title: TF ChIP-seq from whole organism (ENCLB293GZX)

description:
https://www.encodeproject.org/experiments/ENCSR291ZDB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG4424-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR291ZDB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR656YMX
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB293GZX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG4424

value: pooled male and female

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS032AMN at ENCODE; https://www.encodeproject.org/ENCBS032AMN/


title: TF ChIP-seq from whole organism (ENCLB078RLY)

description:
https://www.encodeproject.org/experiments/ENCSR196VPW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR196VPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR608LKO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB078RLY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hr4-GFP mixed sex prepupa (48 days) at white prepupa stage insertion targeting D. melanogaster Hr4

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr4

value: prepupa

value: 48 day

value: white prepupa

value: ENCBS158JTI at ENCODE; https://www.encodeproject.org/ENCBS158JTI/


title: TF ChIP-seq from whole organism (ENCLB476BOS)

description:
https://www.encodeproject.org/experiments/ENCSR252OVI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-18-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR252OVI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR291MSY
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB476BOS
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-18

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS934ZZY at ENCODE; https://www.encodeproject.org/ENCBS934ZZY/


title: Control ChIP-seq from whole organism (ENCLB055OXT)

description:
https://www.encodeproject.org/experiments/ENCSR116MEY/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L2 larva worms.
experiment encode accession: ENCSR116MEY
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB055OXT
size range: 150-350

value: whole organism

value: pooled male and female

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS583RXE at ENCODE; https://www.encodeproject.org/ENCBS583RXE/


title: TF ChIP-seq from whole organism (ENCLB981HTS)

description:
https://www.encodeproject.org/experiments/ENCSR344UEX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing TBX-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR344UEX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR335VJF
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB981HTS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP159 (unc-119(ed3) III; wgIs159) hermaphrodite L3 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans tbx-2

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-2

value: L3 larva

value: L1 larva starved after bleaching

value: ENCBS677AHB at ENCODE; https://www.encodeproject.org/ENCBS677AHB/


title: Control ChIP-seq from whole organism (ENCLB143JFY)

description:
https://www.encodeproject.org/experiments/ENCSR595LMX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13775-eGFP fusion proteins.
experiment encode accession: ENCSR595LMX
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB143JFY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13775-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG13775

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13775

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS355WFT at ENCODE; https://www.encodeproject.org/ENCBS355WFT/


title: Control ChIP-seq from whole organism (ENCLB953YJN)

description:
https://www.encodeproject.org/experiments/ENCSR114XOX/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR114XOX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB953YJN
size range: 150-350

source_name: Caenorhabditis elegans strain OP102 (unc-119(tm4063) III; wgIs102) mixed sex L1 larva insertion targeting C. elegans mep-1

value: whole organism

value: pooled male and female

value: L1 larva

value: unknown

value: ENCBS851BHP at ENCODE; https://www.encodeproject.org/ENCBS851BHP/


title: Control ChIP-seq from whole organism (ENCLB799YHN)

description:
https://www.encodeproject.org/experiments/ENCSR095HSC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F13H6.1-eGFP fusion proteins.
experiment encode accession: ENCSR095HSC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB799YHN
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Caenorhabditis elegans strain OP471 (unc-119(tm4063) III; wgIs471) hermaphrodite L2 larva 22 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans bcl-11

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F13H6.1

value: hermaphrodite

value: L2 larva

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS104FNU at ENCODE; https://www.encodeproject.org/ENCBS104FNU/


title: TF ChIP-seq from whole organism (ENCLB821KUD)

description:
https://www.encodeproject.org/experiments/ENCSR893CTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ss-RB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR893CTZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR054LVI
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB821KUD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ss

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ss-RB

value: prepupa

value: 24 hour

value: ENCBS250KJV at ENCODE; https://www.encodeproject.org/ENCBS250KJV/


title: TF ChIP-seq from whole organism (ENCLB617MCZ)

description:
https://www.encodeproject.org/experiments/ENCSR196VPW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR196VPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR608LKO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB617MCZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr4

value: pooled male and female

value: 48 day

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS747LOH at ENCODE; https://www.encodeproject.org/ENCBS747LOH/


title: TF ChIP-seq from whole organism (ENCLB847ZGG)

description:
https://www.encodeproject.org/experiments/ENCSR893CTZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ss-RB-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR893CTZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR054LVI
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB847ZGG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: ENCBS640XOC at ENCODE; https://www.encodeproject.org/ENCBS640XOC/


title: Control ChIP-seq from whole organism (ENCLB156ITB)

description:
https://www.encodeproject.org/experiments/ENCSR113XNT/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HLH-30-eGFP fusion proteins.
experiment encode accession: ENCSR113XNT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB156ITB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP433 (unc-119(tm4063) III; wgIs433) hermaphrodite L4 larva insertion targeting C. elegans hlh-30

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HLH-30

value: hermaphrodite

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS538AVO at ENCODE; https://www.encodeproject.org/ENCBS538AVO/


title: TF ChIP-seq from whole organism (ENCLB542JIN)

description:
https://www.encodeproject.org/experiments/ENCSR344UEX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing TBX-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR344UEX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR335VJF
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB542JIN
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-2

value: L3 larva

value: L1 larva starved after bleaching

value: hour

value: ENCBS207EEK at ENCODE; https://www.encodeproject.org/ENCBS207EEK/


title: Control ChIP-seq from whole organism (ENCLB721ASI)

description:
https://www.encodeproject.org/experiments/ENCSR114XOX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR114XOX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB721ASI
size range: 150-350

value: pooled male and female

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS847FYS at ENCODE; https://www.encodeproject.org/ENCBS847FYS/


title: TF ChIP-seq from whole organism (ENCLB721NTH)

description:
https://www.encodeproject.org/experiments/ENCSR890AWM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR890AWM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR840JKR
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB721NTH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17359 embryo (0-14 hours) insertion targeting D. melanogaster CG17359

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17359

value: not collected

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS022KHY at ENCODE; https://www.encodeproject.org/ENCBS022KHY/


title: Control ChIP-seq from whole organism (ENCLB724IBQ)

description:
https://www.encodeproject.org/experiments/ENCSR083MKO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing POP-1-eGFP fusion proteins.
experiment encode accession: ENCSR083MKO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB724IBQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP560 (unc-119(tm4063) III; wgIs560) mixed sex early embryo 2.5 hours post synchronization using egg bleaching insertion targeting C. elegans pop-1

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to POP-1

value: early embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: ENCBS810BZR at ENCODE; https://www.encodeproject.org/ENCBS810BZR/


title: TF ChIP-seq from whole organism (ENCLB129JWT)

description:
https://www.encodeproject.org/experiments/ENCSR120TCW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Atf3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR120TCW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR437TND
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB129JWT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain A3-3-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Atf3

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Atf3

value: pooled male and female

value: 0-24 hour

value: ENCBS303MZL at ENCODE; https://www.encodeproject.org/ENCBS303MZL/


title: TF ChIP-seq from whole organism (ENCLB733QQW)

description:
https://www.encodeproject.org/experiments/ENCSR196VPW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hr4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR196VPW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR608LKO
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB733QQW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr4

value: prepupa

value: 48 day

value: Kevin White, UChicago

value: white prepupa

value: ENCBS933EQR at ENCODE; https://www.encodeproject.org/ENCBS933EQR/


title: TF ChIP-seq from whole organism (ENCLB640FPU)

description:
https://www.encodeproject.org/experiments/ENCSR890AWM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR890AWM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR840JKR
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB640FPU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17359

value: not collected

value: embryonic

value: 0-14 hour

value: Kevin White

value: ENCBS022SLW at ENCODE; https://www.encodeproject.org/ENCBS022SLW/


title: TF ChIP-seq from whole organism (ENCLB044DFM)

description:
https://www.encodeproject.org/experiments/ENCSR246TDY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR246TDY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR543SCG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB044DFM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP578 (unc-119(tm4063) III; wgIs578) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans unc-3

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-3

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS431ERN at ENCODE; https://www.encodeproject.org/ENCBS431ERN/


title: TF ChIP-seq from whole organism (ENCLB263UCG)

description:
https://www.encodeproject.org/experiments/ENCSR888UWA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR888UWA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR530FXD
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB263UCG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bab1-RA (bab1-s)-GFP female adult insertion targeting D. melanogaster bab1

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bab1

value: female

value: adult

value: Kevin White, UChicago

value: ENCBS875LHP at ENCODE; https://www.encodeproject.org/ENCBS875LHP/


title: TF ChIP-seq from whole organism (ENCLB034RMN)

description:
https://www.encodeproject.org/experiments/ENCSR112URX/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mab-5 in mixed stage (embryonic) worms.
experiment encode accession: ENCSR112URX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR452WHZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB034RMN
size range: 150-350

source_name: Caenorhabditis elegans strain OP27 (unc-119(ed3) III; wgIs27) mixed sex mixed stage (embryo) insertion targeting C. elegans mab-5

value: whole organisms

value: pooled male and female

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS210RUX at ENCODE; https://www.encodeproject.org/ENCBS210RUX/


title: TF ChIP-seq from whole organism (ENCLB730DMF)

description:
https://www.encodeproject.org/experiments/ENCSR192NDP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F08F3.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR192NDP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR191TAJ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB730DMF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain YL485 hermaphrodite young adult insertion targeting C. elegans snpc-1.3

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F08F3.9

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS002TTF at ENCODE; https://www.encodeproject.org/ENCBS002TTF/


title: TF ChIP-seq from whole organism (ENCLB706XAE)

description:
https://www.encodeproject.org/experiments/ENCSR246TDY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR246TDY
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR543SCG
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB706XAE
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-3

value: late embryonic

value: egg bleaching

value: hour

value: ENCBS045VXR at ENCODE; https://www.encodeproject.org/ENCBS045VXR/


title: TF ChIP-seq from whole organism (ENCLB736MEG)

description:
https://www.encodeproject.org/experiments/ENCSR192NDP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F08F3.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR192NDP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR191TAJ
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB736MEG
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: ENCBS769NFD at ENCODE; https://www.encodeproject.org/ENCBS769NFD/


title: TF ChIP-seq from whole organism (ENCLB222NEN)

description:
https://www.encodeproject.org/experiments/ENCSR888UWA/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR888UWA
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR530FXD
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB222NEN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Bab1

value: female

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS261EXQ at ENCODE; https://www.encodeproject.org/ENCBS261EXQ/


title: Control ChIP-seq from whole organism (ENCLB073TVJ)

description:
https://www.encodeproject.org/experiments/ENCSR112GYX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in late-embryonic stage worms.
experiment encode accession: ENCSR112GYX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB073TVJ
size range: 150-350

source_name: Caenorhabditis elegans strain OP117 (unc-119(ed3) III; wgIs117) mixed sex late embryo insertion targeting C. elegans pax-1

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS607ZZD at ENCODE; https://www.encodeproject.org/ENCBS607ZZD/