title: Control ChIP-seq from whole organism (ENCLB395ALW)

description:
https://www.encodeproject.org/experiments/ENCSR896VBS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing TBX-2-eGFP fusion proteins.
experiment encode accession: ENCSR896VBS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB395ALW
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP159 (unc-119(ed3) III; wgIs159) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans tbx-2

value: whole organism

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to TBX-2

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS458HPY at ENCODE; https://www.encodeproject.org/ENCBS458HPY/


title: TF ChIP-seq from whole organism (ENCLB368ZYS)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR323LIQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F52B5.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR323LIQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR329VYL
encode release date: 2016-10-11
lab: Valerie Reinke, Yale
library encode accession: ENCLB368ZYS
fragmentation methods: sonication (generic microtip)

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F52B5.7

tag: antibody

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F52B5.7

tag: Sex

value: pooled male and female

tag: dev stage

value: young adult

tag: age

tag: lab

tag: source

tag: worm synchronization stage

value: L1 larva starved after bleaching

tag: post synchronization time

tag: post synchronization time units

tag: link

value: ENCBS920OLK at ENCODE; https://www.encodeproject.org/ENCBS920OLK/


title: Control ChIP-seq from whole organism (ENCLB500ZUI)

description:
https://www.encodeproject.org/experiments/ENCSR163EWH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10274-eGFP fusion proteins.
experiment encode accession: ENCSR163EWH
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB500ZUI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain CG10274-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10274

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10274

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS955ZAA at ENCODE; https://www.encodeproject.org/ENCBS955ZAA/


title: TF ChIP-seq from whole organism (ENCLB180DJA)

description:
https://www.encodeproject.org/experiments/ENCSR164WWJ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fd64A-eGFP fusion proteins.
experiment encode accession: ENCSR164WWJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR638MNR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB180DJA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd64A-GFP mixed sex embryo (8-14 hours) insertion targeting D. melanogaster FoxL1

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd64A

value: ENCBS457VEU at ENCODE; https://www.encodeproject.org/ENCBS457VEU/


title: TF ChIP-seq from whole organism (ENCLB236VZM)

description:
https://www.encodeproject.org/experiments/ENCSR891WMQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-90-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR891WMQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR934KWG
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB236VZM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP210 (unc-119(ed3) III; wgIs210) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-90

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-90

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS135PPM at ENCODE; https://www.encodeproject.org/ENCBS135PPM/


title: Control ChIP-seq from whole organism (ENCLB749WKN)

description:
https://www.encodeproject.org/experiments/ENCSR044YAD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR044YAD
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB749WKN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG33017 male adult insertion targeting D. melanogaster CG33017

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG33017

value: male

value: adult

value: ENCBS747SMU at ENCODE; https://www.encodeproject.org/ENCBS747SMU/


title: Control ChIP-seq from whole organism (ENCLB207IMR)

description:
https://www.encodeproject.org/experiments/ENCSR709XYX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing SWSN-7-eGFP fusion proteins.
experiment encode accession: ENCSR709XYX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB207IMR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP512 (unc-119(tm4063) III; wgIs512) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans swsn-7

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SWSN-7

value: L1 larva starved after bleaching

value: ENCBS815EEN at ENCODE; https://www.encodeproject.org/ENCBS815EEN/


title: TF ChIP-seq from whole organism (ENCLB100HBA)

description:
https://www.encodeproject.org/experiments/ENCSR154LSU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing akir-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR154LSU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR990RKL
encode release date: 2018-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB100HBA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain IG1654 (frSi12[pNP157(akir-1p::AKIR-1::GFP)]II) mixed sex young adult (70 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans akir-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to AKIR-1.

value: pooled male and female

value: young adult

value: 70 hour

value: ENCBS847YWI at ENCODE; https://www.encodeproject.org/ENCBS847YWI/


title: Control ChIP-seq from whole organism (ENCLB814WEO)

description:
https://www.encodeproject.org/experiments/ENCSR884LDO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HMG-11-eGFP fusion proteins.
experiment encode accession: ENCSR884LDO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB814WEO
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain TH184 ( unc-119(ed3) III; ddIs101) hermaphrodite L3 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hmg-11

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMG-11

value: hermaphrodite

value: L3 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS540RGU at ENCODE; https://www.encodeproject.org/ENCBS540RGU/


title: TF ChIP-seq from whole organism (ENCLB733POB)

description:
https://www.encodeproject.org/experiments/ENCSR154LSU/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing akir-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR154LSU
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR990RKL
encode release date: 2018-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB733POB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: ENCBS066PNQ at ENCODE; https://www.encodeproject.org/ENCBS066PNQ/


title: TF ChIP-seq from whole organism (ENCLB746ZMO)

description:
https://www.encodeproject.org/experiments/ENCSR891WMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing CEH-90-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR891WMQ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR934KWG
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB746ZMO
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-90

value: L1 larva

value: L1 larva starved after bleaching

value: ENCBS570XVF at ENCODE; https://www.encodeproject.org/ENCBS570XVF/


title: Control ChIP-seq from whole organism (ENCLB917EKX)

description:
https://www.encodeproject.org/experiments/ENCSR225LWH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MLS-2-eGFP fusion proteins.
experiment encode accession: ENCSR225LWH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB917EKX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP645 (unc-119(tm4063) III; wgIs645) mixed sex mixed stage (embryo) 2 hours post synchronization using egg bleaching insertion targeting C. elegans mls-2

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MLS-2

value: pooled male and female

value: mixed stage (embryonic)

value: egg bleaching

value: ENCBS799OEL at ENCODE; https://www.encodeproject.org/ENCBS799OEL/


title: Control ChIP-seq from whole organism (ENCLB960ONG)

description:
https://www.encodeproject.org/experiments/ENCSR149QOO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-43-eGFP fusion proteins.
experiment encode accession: ENCSR149QOO
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB960ONG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP699 (unc-119(tm4063); wgIs699 [ceh-43::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (3 hours) using egg bleaching insertion targeting C. elegans ceh-43

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-43.

value: 3 hour

value: Valerie Reinke, Yale

value: ENCBS058LTC at ENCODE; https://www.encodeproject.org/ENCBS058LTC/


title: TF ChIP-seq from whole organism (ENCLB149DJF)

description:
https://www.encodeproject.org/experiments/ENCSR164WWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fd64A-eGFP fusion proteins.
experiment encode accession: ENCSR164WWJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR638MNR
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB149DJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd64A

value: embryonic

value: Kevin White, UChicago

value: Kevin White

value: ENCBS041NKI at ENCODE; https://www.encodeproject.org/ENCBS041NKI/


title: TF ChIP-seq from whole organism (ENCLB011VCB)

description:
https://www.encodeproject.org/experiments/ENCSR161YRO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17181-eGFP fusion proteins.
experiment encode accession: ENCSR161YRO
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR664RUV
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB011VCB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain kah-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster Kah

value: kah

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to kah

value: 0-16 hour

value: ENCBS300GPD at ENCODE; https://www.encodeproject.org/ENCBS300GPD/


title: TF ChIP-seq from whole organism (ENCLB015IHK)

description:
https://www.encodeproject.org/experiments/ENCSR167BID/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bcd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR167BID
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR674PHY
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB015IHK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain 1T-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster bcd

value: bcd

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to bcd

value: pooled male and female

value: 0-24 hour

value: ENCBS952BGS at ENCODE; https://www.encodeproject.org/ENCBS952BGS/


title: TF ChIP-seq from whole organism (ENCLB619BOI)

description:
https://www.encodeproject.org/experiments/ENCSR167BID/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bcd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR167BID
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR674PHY
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB619BOI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS952CGK at ENCODE; https://www.encodeproject.org/ENCBS952CGK/


title: Control ChIP-seq from whole organism (ENCLB195CEF)

description:
https://www.encodeproject.org/experiments/ENCSR161QIN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG7056-eGFP fusion proteins.
experiment encode accession: ENCSR161QIN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB195CEF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7056-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster HHEX

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7056

value: embryonic

value: ENCBS967MPT at ENCODE; https://www.encodeproject.org/ENCBS967MPT/


title: TF ChIP-seq from whole organism (ENCLB273JWK)

description:
https://www.encodeproject.org/experiments/ENCSR698RXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F55B11.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR698RXJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR276KDH
encode release date: 2016-07-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB273JWK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP385 (unc-119(tm4063) III; wgIs385) hermaphrodite young adult 65 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F55B11.4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F55B11.4

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS560ZME at ENCODE; https://www.encodeproject.org/ENCBS560ZME/


title: Control ChIP-seq from whole organism (ENCLB704SWH)

description:
https://www.encodeproject.org/experiments/ENCSR223SII/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F13C5.2-eGFP fusion proteins.
experiment encode accession: ENCSR223SII
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB704SWH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP605 (unc-119(tm4063) III; wgIs605) mixed sex early embryo 1 hour post synchronization using egg bleaching insertion targeting C. elegans F13C5.2

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F13C5.2

value: pooled male and female

value: early embryonic

value: egg bleaching

value: ENCBS300JLH at ENCODE; https://www.encodeproject.org/ENCBS300JLH/


title: TF ChIP-seq from whole organism (ENCLB813WMH)

description:
https://www.encodeproject.org/experiments/ENCSR698RXJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F55B11.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR698RXJ
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR276KDH
encode release date: 2016-07-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB813WMH
fragmentation methods: sonication (generic microtip)

value: whole organism

value: ENCBS314GUZ at ENCODE; https://www.encodeproject.org/ENCBS314GUZ/


title: TF ChIP-seq from whole organism (ENCLB810XDB)

description:
https://www.encodeproject.org/experiments/ENCSR161OBF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR161OBF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR840VLX
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB810XDB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG15479-GFP mixed sex embryo (0-4 hours) insertion targeting D. melanogaster Mabi

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mabi

value: embryonic

value: 0-4 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS954OCX at ENCODE; https://www.encodeproject.org/ENCBS954OCX/


title: Control ChIP-seq from whole organism (ENCLB685KUD)

description:
https://www.encodeproject.org/experiments/ENCSR223SII/
***************
biological replicate number: 3
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F13C5.2-eGFP fusion proteins.
experiment encode accession: ENCSR223SII
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB685KUD
fragmentation methods: sonication (generic microtip)

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS166UNV at ENCODE; https://www.encodeproject.org/ENCBS166UNV/


title: Control ChIP-seq from whole organism (ENCLB390XJL)

description:
https://www.encodeproject.org/experiments/ENCSR568HWW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing RBR-2-eGFP fusion proteins.
experiment encode accession: ENCSR568HWW
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB390XJL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP195 hermaphrodite L4 larva 56 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rbr-2

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RBR-2

value: hermaphrodite

value: L4 larva

value: L1 larva starved after bleaching

value: ENCBS783LMX at ENCODE; https://www.encodeproject.org/ENCBS783LMX/


title: TF ChIP-seq from whole organism (ENCLB825VNG)

description:
https://www.encodeproject.org/experiments/ENCSR161OBF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR161OBF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR840VLX
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB825VNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mabi

value: pooled male and female

value: embryonic

value: ENCBS672EAK at ENCODE; https://www.encodeproject.org/ENCBS672EAK/


title: Control ChIP-seq from whole organism (ENCLB589XHH)

description:
https://www.encodeproject.org/experiments/ENCSR866EST/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing LIN-40-eGFP fusion proteins.
experiment encode accession: ENCSR866EST
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB589XHH
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP485 hermaphrodite young adult 57.25 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans lin-40

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-40

value: young adult

value: unknown

value: ENCBS573EXY at ENCODE; https://www.encodeproject.org/ENCBS573EXY/


title: TF ChIP-seq from whole organism (ENCLB702PXB)

description:
https://www.encodeproject.org/experiments/ENCSR161OBF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR161OBF
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR840VLX
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB702PXB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: 0-4 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS276HWW at ENCODE; https://www.encodeproject.org/ENCBS276HWW/


title: TF ChIP-seq from whole organism (ENCLB657OCR)

description:
https://www.encodeproject.org/experiments/ENCSR693VPE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-86-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR693VPE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR481GBB
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB657OCR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP476 (unc-119(tm4063) III; wgIs476) hermaphrodite late embryo 3.5 hours post synchronization using egg bleaching insertion targeting C. elegans unc-86

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-86

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS582ABT at ENCODE; https://www.encodeproject.org/ENCBS582ABT/


title: Control ChIP-seq from whole organism (ENCLB264HOL)

description:
https://www.encodeproject.org/experiments/ENCSR318RVX/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing HMBX-1-eGFP fusion proteins.
experiment encode accession: ENCSR318RVX
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB264HOL
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP656 (unc-119 (tm4063) III; wgIs656) mixed sex early embryo 45 minutes post synchronization using egg bleaching insertion targeting C. elegans hmbx-1

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMBX-1

value: pooled male and female

value: early embryonic

value: minute

value: ENCBS335RPL at ENCODE; https://www.encodeproject.org/ENCBS335RPL/


title: Control ChIP-seq from whole organism (ENCLB391FIA)

description:
https://www.encodeproject.org/experiments/ENCSR233YTV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG7928-eGFP fusion proteins.
experiment encode accession: ENCSR233YTV
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB391FIA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7928-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ZIPIC

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7928

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS334UDK at ENCODE; https://www.encodeproject.org/ENCBS334UDK/


title: TF ChIP-seq from whole organism (ENCLB998BIT)

description:
https://www.encodeproject.org/experiments/ENCSR161YRO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG17181-eGFP fusion proteins.
experiment encode accession: ENCSR161YRO
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR664RUV
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB998BIT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: kah

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to kah

value: 0-16 hour

value: ENCBS794EFS at ENCODE; https://www.encodeproject.org/ENCBS794EFS/


title: Control ChIP-seq from whole organism (ENCLB909EXD)

description:
https://www.encodeproject.org/experiments/ENCSR219MAS/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing gei-8-eGFP fusion proteins.
experiment encode accession: ENCSR219MAS
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB909EXD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP589 (unc-119(tm4063); wgIs589 [gei-8::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans gei-8

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to GEI-8.

value: L4 larva

value: 48 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS502AQO at ENCODE; https://www.encodeproject.org/ENCBS502AQO/


title: TF ChIP-seq from whole organism (ENCLB329ZBR)

description:
https://www.encodeproject.org/experiments/ENCSR233UXG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6254-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR233UXG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR411JGG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB329ZBR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6254-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG6254

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6254

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: ENCBS000EJW at ENCODE; https://www.encodeproject.org/ENCBS000EJW/


title: TF ChIP-seq from whole organism (ENCLB113TZM)

description:
https://www.encodeproject.org/experiments/ENCSR316ASH/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing B0261.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR316ASH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR911LPA
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB113TZM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP662 (unc-119(tm4063) III; wgIs662) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans B0261.1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to B0261.1

value: young adult

value: unknown

value: hour

value: ENCBS422IXH at ENCODE; https://www.encodeproject.org/ENCBS422IXH/


title: Control ChIP-seq from whole organism (ENCLB543HJE)

description:
https://www.encodeproject.org/experiments/ENCSR561ULE/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ELT-2-eGFP fusion proteins.
experiment encode accession: ENCSR561ULE
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB543HJE
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans elt-2

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: L3 larva

value: Valerie Reinke, Yale

value: ENCBS903GFU at ENCODE; https://www.encodeproject.org/ENCBS903GFU/


title: TF ChIP-seq from whole organism (ENCLB707XJC)

description:
https://www.encodeproject.org/experiments/ENCSR316ASH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing B0261.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR316ASH
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR911LPA
encode release date: 2016-10-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB707XJC
fragmentation methods: sonication (generic microtip)

value: pooled male and female

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS322CWZ at ENCODE; https://www.encodeproject.org/ENCBS322CWZ/


title: TF ChIP-seq from whole organism (ENCLB836KKT)

description:
https://www.encodeproject.org/experiments/ENCSR233UXG/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6254-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR233UXG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR411JGG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB836KKT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6254

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS726UYA at ENCODE; https://www.encodeproject.org/ENCBS726UYA/


title: TF ChIP-seq from whole organism (ENCLB712WLP)

description:
https://www.encodeproject.org/experiments/ENCSR693VPE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing UNC-86-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR693VPE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR481GBB
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB712WLP
fragmentation methods: sonication (generic microtip)

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-86

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS384PDK at ENCODE; https://www.encodeproject.org/ENCBS384PDK/


title: Control ChIP-seq from whole organism (ENCLB154TBU)

description:
https://www.encodeproject.org/experiments/ENCSR158HVZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing E(spl)m5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR158HVZ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB154TBU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain E(spl)m5-GFP mixed sex embryo (0-12 hours) insertion targeting D. melanogaster E(spl)m5-HLH

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to E(spl)m5

value: pooled male and female

value: 0-12 hour

value: ENCBS842YWE at ENCODE; https://www.encodeproject.org/ENCBS842YWE/


title: Control ChIP-seq from whole organism (ENCLB758PXV)

description:
https://www.encodeproject.org/experiments/ENCSR143RMG/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing MEL-28-eGFP fusion proteins.
experiment encode accession: ENCSR143RMG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB758PXV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP646 (unc-119(tm4063) III; wgIs646) mixed sex young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans mel-28

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MEL-28

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS686LDP at ENCODE; https://www.encodeproject.org/ENCBS686LDP/


title: Control ChIP-seq from whole organism (ENCLB060XOZ)

description:
https://www.encodeproject.org/experiments/ENCSR314YMV/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F10E7.11-eGFP fusion proteins.
experiment encode accession: ENCSR314YMV
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-22
lab: Valerie Reinke, Yale
library encode accession: ENCLB060XOZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP658 (unc-119(tm4063) III; wgIs658) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F10E7.11

value: whole organism

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F10E7.11

value: ENCBS075TJY at ENCODE; https://www.encodeproject.org/ENCBS075TJY/


title: TF ChIP-seq from whole organism (ENCLB031SQX)

description:
https://www.encodeproject.org/experiments/ENCSR557ZYT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-80-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR557ZYT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR654ODD
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB031SQX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP460 (unc-119(tm4063) III; wgIs460) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-80

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-80

value: hermaphrodite

value: unknown

value: hour

value: ENCBS547GQH at ENCODE; https://www.encodeproject.org/ENCBS547GQH/


title: TF ChIP-seq from whole organism (ENCLB535GUJ)

description:
https://www.encodeproject.org/experiments/ENCSR557ZYT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing NHR-80-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR557ZYT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR654ODD
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB535GUJ
fragmentation methods: sonication (generic microtip)

value: ENCBS044GYH at ENCODE; https://www.encodeproject.org/ENCBS044GYH/


title: Control ChIP-seq from whole organism (ENCLB947VWI)

description:
https://www.encodeproject.org/experiments/ENCSR157XVL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Clk-eGFP fusion proteins.
experiment encode accession: ENCSR157XVL
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB947VWI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Clk-GFP male adult insertion targeting D. melanogaster Clk

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Clk

value: male

value: adult

value: Kevin White, UChicago

value: Kevin White

value: ENCBS000UXH at ENCODE; https://www.encodeproject.org/ENCBS000UXH/


title: TF ChIP-seq from whole organism (ENCLB358ZGN)

description:
https://www.encodeproject.org/experiments/ENCSR209ZYI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing EFL-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR209ZYI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR335QVI
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB358ZGN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP344 (unc-119(tm4063); wgIs344 [F49E12.6::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans efl-3

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-3.

value: pooled male and female

value: L1 larva

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS770AMN at ENCODE; https://www.encodeproject.org/ENCBS770AMN/


title: TF ChIP-seq from whole organism (ENCLB331UAE)

description:
https://www.encodeproject.org/experiments/ENCSR233UXG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6254-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR233UXG
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR411JGG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB331UAE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6254

value: embryonic

value: 0-14 hour

value: ENCBS985TNA at ENCODE; https://www.encodeproject.org/ENCBS985TNA/


title: TF ChIP-seq from whole organism (ENCLB928GCT)

description:
https://www.encodeproject.org/experiments/ENCSR379UPR/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DMD-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR379UPR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR931UUY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB928GCT
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP418 (unc-119(tm4063) III; wgIs418) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans dmd-4

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DMD-4

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS158TKJ at ENCODE; https://www.encodeproject.org/ENCBS158TKJ/


title: Control ChIP-seq from whole organism (ENCLB192DDX)

description:
https://www.encodeproject.org/experiments/ENCSR215YKL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ceh-83-eGFP fusion proteins.
experiment encode accession: ENCSR215YKL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB192DDX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP727 (unc-119(tm4063); wgIs727 [ceh-83::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (1 hour) using egg bleaching insertion targeting C. elegans ceh-83

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-83.

value: pooled male and female

value: mixed stage (embryonic)

value: 1 hour

value: Valerie Reinke, Yale

value: ENCBS658ZCH at ENCODE; https://www.encodeproject.org/ENCBS658ZCH/


title: TF ChIP-seq from whole organism (ENCLB302OHD)

description:
https://www.encodeproject.org/experiments/ENCSR379UPR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing DMD-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR379UPR
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR931UUY
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB302OHD
fragmentation methods: sonication (generic microtip)

value: not applicable

value: Valerie Reinke

value: ENCBS905BQB at ENCODE; https://www.encodeproject.org/ENCBS905BQB/


title: TF ChIP-seq from whole organism (ENCLB982KHX)

description:
https://www.encodeproject.org/experiments/ENCSR209ZYI/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing EFL-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR209ZYI
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR335QVI
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB982KHX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to EFL-3.

value: L1 larva

value: 6 hour

value: L1 larva starved after bleaching

value: ENCBS980YFX at ENCODE; https://www.encodeproject.org/ENCBS980YFX/


title: TF ChIP-seq from whole organism (ENCLB832WTY)

description:
https://www.encodeproject.org/experiments/ENCSR156QJC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Kr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR156QJC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR641PEJ
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB832WTY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Kr-GFP mixed sex embryo (0-10 hours) insertion targeting D. melanogaster Kr

value: Kr

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Kr

value: embryonic

value: 0-10 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS994ZSF at ENCODE; https://www.encodeproject.org/ENCBS994ZSF/


title: TF ChIP-seq from whole organism (ENCLB666XGD)

description:
https://www.encodeproject.org/experiments/ENCSR042FCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7556-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR042FCJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR561OFJ
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB666XGD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG7556-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG7556

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7556

value: pooled male and female

value: 0-24 hour

value: ENCBS929ALG at ENCODE; https://www.encodeproject.org/ENCBS929ALG/


title: TF ChIP-seq from whole organism (ENCLB923ZYV)

description:
https://www.encodeproject.org/experiments/ENCSR686FKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZIP-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR686FKU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR821PFS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB923ZYV
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP544 (unc-119(tm4063) III; wgIs544) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans zip-5

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZIP-5

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS307NHL at ENCODE; https://www.encodeproject.org/ENCBS307NHL/


title: TF ChIP-seq from whole organism (ENCLB430OST)

description:
https://www.encodeproject.org/experiments/ENCSR306UKE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing HMG-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR306UKE
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR231AGR
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB430OST
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (0 hours) using egg bleaching insertion targeting C. elegans hmg-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMG-4.

value: early embryonic

value: 0 hour

value: ENCBS789RYF at ENCODE; https://www.encodeproject.org/ENCBS789RYF/


title: TF ChIP-seq from whole organism (ENCLB158JOR)

description:
https://www.encodeproject.org/experiments/ENCSR306UKE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing HMG-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR306UKE
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR231AGR
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB158JOR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: pooled male and female

value: ENCBS943VYN at ENCODE; https://www.encodeproject.org/ENCBS943VYN/


title: TF ChIP-seq from whole organism (ENCLB160BSC)

description:
https://www.encodeproject.org/experiments/ENCSR324QVN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hmr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR324QVN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR349TJN
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB160BSC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hmr-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hmr

value: Hmr

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hmr

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS346VOR at ENCODE; https://www.encodeproject.org/ENCBS346VOR/


title: TF ChIP-seq from whole organism (ENCLB799QST)

description:
https://www.encodeproject.org/experiments/ENCSR204WOO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing SOX-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR204WOO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR745QHO
encode release date: 2017-11-06
lab: Valerie Reinke, Yale
library encode accession: ENCLB799QST
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2000

source_name: Caenorhabditis elegans strain OP517 (unc-119(tm4063) III; wgIs517) mixed sex late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans sox-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SOX-4

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS133PPJ at ENCODE; https://www.encodeproject.org/ENCBS133PPJ/


title: Control ChIP-seq from whole organism (ENCLB502ZAO)

description:
https://www.encodeproject.org/experiments/ENCSR545DXH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NHR-85-eGFP fusion proteins.
experiment encode accession: ENCSR545DXH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB502ZAO
fragmentation methods: sonication (generic microtip)
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Caenorhabditis elegans strain OP539 (unc-119(tm4063) III; wgIs539) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-85

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-85

value: hermaphrodite

value: L1 larva

value: L1 larva starved after bleaching

value: ENCBS495ZOS at ENCODE; https://www.encodeproject.org/ENCBS495ZOS/


title: TF ChIP-seq from whole organism (ENCLB360UJZ)

description:
https://www.encodeproject.org/experiments/ENCSR376OYD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HMG-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR376OYD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR884LDO
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB360UJZ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain TH184 ( unc-119(ed3) III; ddIs101) hermaphrodite L3 larva 52 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans hmg-11

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMG-11

value: L3 larva

value: ENCBS138PFS at ENCODE; https://www.encodeproject.org/ENCBS138PFS/


title: TF ChIP-seq from whole organism (ENCLB672XXJ)

description:
https://www.encodeproject.org/experiments/ENCSR042FCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG7556-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR042FCJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR561OFJ
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB672XXJ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG7556

value: pooled male and female

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS002HKQ at ENCODE; https://www.encodeproject.org/ENCBS002HKQ/


title: Control ChIP-seq from whole organism (ENCLB191IHI)

description:
https://www.encodeproject.org/experiments/ENCSR559HIP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing UNC-130-eGFP fusion proteins.
experiment encode accession: ENCSR559HIP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB191IHI
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain AGK541 ((armSi1[Pmex5::UNC-130::GFP::tbb-2 3'UTR; cb-unc-119(+)II]; unc-119(ed3)III; niDf199IV)) hermaphrodite L4 larva 48 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elega...

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to UNC-130

value: L4 larva

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: hour

value: ENCBS353AIQ at ENCODE; https://www.encodeproject.org/ENCBS353AIQ/


title: TF ChIP-seq from whole organism (ENCLB478HNW)

description:
https://www.encodeproject.org/experiments/ENCSR296BKT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing cnd-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR296BKT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR609PJK
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB478HNW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP349 (unc-119(ed3) III; wgIs349) mixed sex mixed stage (embryo) (3 hours) using egg bleaching insertion targeting C. elegans cnd-1

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CND-1.

value: mixed stage (embryonic)

value: 3 hour

value: egg bleaching

value: ENCBS211QEF at ENCODE; https://www.encodeproject.org/ENCBS211QEF/


title: TF ChIP-seq from whole organism (ENCLB182FYR)

description:
https://www.encodeproject.org/experiments/ENCSR376OYD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing HMG-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR376OYD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR884LDO
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB182FYR
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to HMG-11

value: hermaphrodite

value: L3 larva

value: L1 larva starved after bleaching

value: ENCBS198TYO at ENCODE; https://www.encodeproject.org/ENCBS198TYO/


title: TF ChIP-seq from whole organism (ENCLB826SQB)

description:
https://www.encodeproject.org/experiments/ENCSR296BKT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing cnd-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR296BKT
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR609PJK
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB826SQB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: pooled male and female

value: ENCBS624XNK at ENCODE; https://www.encodeproject.org/ENCBS624XNK/


title: TF ChIP-seq from whole organism (ENCLB674CRM)

description:
https://www.encodeproject.org/experiments/ENCSR324QVN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hmr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR324QVN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR349TJN
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB674CRM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Hmr

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hmr

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS290AOU at ENCODE; https://www.encodeproject.org/ENCBS290AOU/


title: TF ChIP-seq from whole organism (ENCLB913NLQ)

description:
https://www.encodeproject.org/experiments/ENCSR686FKU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ZIP-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR686FKU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR821PFS
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB913NLQ
fragmentation methods: sonication (generic microtip)

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZIP-5

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS773ZSD at ENCODE; https://www.encodeproject.org/ENCBS773ZSD/


title: TF ChIP-seq from whole organism (ENCLB304BBG)

description:
https://www.encodeproject.org/experiments/ENCSR324QVN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Hmr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR324QVN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR349TJN
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB304BBG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Hmr

value: whole organism

value: pooled male and female

value: ENCBS581ETV at ENCODE; https://www.encodeproject.org/ENCBS581ETV/


title: Control ChIP-seq from whole organism (ENCLB956NDA)

description:
https://www.encodeproject.org/experiments/ENCSR028XNW/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing drap-1-eGFP fusion proteins.
experiment encode accession: ENCSR028XNW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB956NDA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP700 (wgIs700(drap-1::TY1 EGFP 3xFLAG(p_wTRG5_insertion_c_0086_1E01);unc-119(+));unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching insertion targeting C. elegans drap-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DRAP-1.

value: mixed stage (embryonic)

value: 3 hour

value: ENCBS879FCF at ENCODE; https://www.encodeproject.org/ENCBS879FCF/


title: Control ChIP-seq from whole organism (ENCLB371HYX)

description:
https://www.encodeproject.org/experiments/ENCSR231WZH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing schlank-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR231WZH
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB371HYX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain schlank mixed sex embryo (0-24 hours) insertion targeting D. melanogaster schlank

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to schlank

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS900PNY at ENCODE; https://www.encodeproject.org/ENCBS900PNY/


title: Control ChIP-seq from whole organism (ENCLB794DGM)

description:
https://www.encodeproject.org/experiments/ENCSR276KDH/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F55B11.4-eGFP fusion proteins.
experiment encode accession: ENCSR276KDH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB794DGM
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP385 (unc-119(tm4063) III; wgIs385) hermaphrodite young adult 65 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans F55B11.4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F55B11.4

value: hermaphrodite

value: young adult

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: hour

value: ENCBS694QPO at ENCODE; https://www.encodeproject.org/ENCBS694QPO/


title: TF ChIP-seq from whole organism (ENCLB827JFD)

description:
https://www.encodeproject.org/experiments/ENCSR156QJC/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Kr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR156QJC
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR641PEJ
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB827JFD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kr

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Kr

value: pooled male and female

value: 0-10 hour

value: ENCBS252MJY at ENCODE; https://www.encodeproject.org/ENCBS252MJY/


title: TF ChIP-seq from whole organism (ENCLB777GLK)

description:
https://www.encodeproject.org/experiments/ENCSR274WQG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RBR-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR274WQG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR568HWW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB777GLK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP195 hermaphrodite L4 larva 56 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans rbr-2

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RBR-2

value: L4 larva

value: ENCBS795UNE at ENCODE; https://www.encodeproject.org/ENCBS795UNE/


title: Control ChIP-seq from whole organism (ENCLB343FYP)

description:
https://www.encodeproject.org/experiments/ENCSR028XNW/
***************
biological replicate number: 2
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing drap-1-eGFP fusion proteins.
experiment encode accession: ENCSR028XNW
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB343FYP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to DRAP-1.

value: mixed stage (embryonic)

value: 3 hour

value: egg bleaching

value: ENCBS947USY at ENCODE; https://www.encodeproject.org/ENCBS947USY/


title: Control ChIP-seq from whole organism (ENCLB780JSQ)

description:
https://www.encodeproject.org/experiments/ENCSR127CDI/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lsl-1-eGFP fusion proteins.
experiment encode accession: ENCSR127CDI
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB780JSQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP720 (unc-119(tm4063); wgIs720 [lsl-1::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex young adult (69 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans lsl-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LSL-1.

value: young adult

value: 69 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS898UHX at ENCODE; https://www.encodeproject.org/ENCBS898UHX/


title: TF ChIP-seq from whole organism (ENCLB697LDE)

description:
https://www.encodeproject.org/experiments/ENCSR155UQM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10979-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR155UQM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR808XII
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB697LDE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex embryo (0-14 hours) insertion targeting D. melanogaster CG10979

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10979

value: pooled male and female

value: embryonic

value: 0-14 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS121RDJ at ENCODE; https://www.encodeproject.org/ENCBS121RDJ/


title: TF ChIP-seq from whole organism (ENCLB450VKZ)

description:
https://www.encodeproject.org/experiments/ENCSR155UQM/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10979-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR155UQM
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR808XII
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB450VKZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: ENCBS445SMH at ENCODE; https://www.encodeproject.org/ENCBS445SMH/


title: TF ChIP-seq from whole organism (ENCLB438FRA)

description:
https://www.encodeproject.org/experiments/ENCSR371DPT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FKH-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR371DPT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR975BES
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB438FRA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP100 (unc-119(tm4063) III; wgIs100) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans fkh-4

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-4

value: hermaphrodite

value: L1 larva

value: unknown

value: hour

value: ENCBS733JOI at ENCODE; https://www.encodeproject.org/ENCBS733JOI/


title: Control ChIP-seq from whole organism (ENCLB202FRN)

description:
https://www.encodeproject.org/experiments/ENCSR292LDA/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing zip-4-eGFP fusion proteins.
experiment encode accession: ENCSR292LDA
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB202FRN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP590 (unc-119(tm4063); wgIs590 [zip-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans zip-4

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ZIP-4.

value: 6 hour

value: Valerie Reinke, Yale

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS334PXE at ENCODE; https://www.encodeproject.org/ENCBS334PXE/


title: Control ChIP-seq from whole organism (ENCLB022AFK)

description:
https://www.encodeproject.org/experiments/ENCSR124ARF/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CEH-8-eGFP fusion proteins.
experiment encode accession: ENCSR124ARF
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-09-19
lab: Kevin White, UChicago
library encode accession: ENCLB022AFK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP760 (unc-119(tm4063); wgIs760 [ceh-8::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L1 larva (6 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans ceh-8

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CEH-8.

value: pooled male and female

value: ENCBS911EAY at ENCODE; https://www.encodeproject.org/ENCBS911EAY/


title: TF ChIP-seq from whole organism (ENCLB189UZF)

description:
https://www.encodeproject.org/experiments/ENCSR321YHE/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1233-eGFP fusion proteins.
experiment encode accession: ENCSR321YHE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR239LBE
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB189UZF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG1233-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG1233

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1233

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS058HHA at ENCODE; https://www.encodeproject.org/ENCBS058HHA/


title: TF ChIP-seq from whole organism (ENCLB696MEE)

description:
https://www.encodeproject.org/experiments/ENCSR321YHE/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1233-eGFP fusion proteins.
experiment encode accession: ENCSR321YHE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR239LBE
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB696MEE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: ENCBS164DUW at ENCODE; https://www.encodeproject.org/ENCBS164DUW/


title: TF ChIP-seq from whole organism (ENCLB740IUK)

description:
https://www.encodeproject.org/experiments/ENCSR371DPT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing FKH-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR371DPT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR975BES
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB740IUK
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to FKH-4

value: hermaphrodite

value: L1 larva

value: unknown

value: Valerie Reinke, Yale

value: hour

value: ENCBS335TTS at ENCODE; https://www.encodeproject.org/ENCBS335TTS/


title: TF ChIP-seq from whole organism (ENCLB116EKX)

description:
https://www.encodeproject.org/experiments/ENCSR321YHE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1233-eGFP fusion proteins.
experiment encode accession: ENCSR321YHE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR239LBE
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB116EKX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: pooled male and female

value: ENCBS092IYY at ENCODE; https://www.encodeproject.org/ENCBS092IYY/


title: TF ChIP-seq from whole organism (ENCLB706PSW)

description:
https://www.encodeproject.org/experiments/ENCSR122TLF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing sdz-12-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR122TLF
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR742BIV
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB706PSW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP670 (unc-119(tm4063); wgIs670 [sdz-12::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L4 larva (71 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans sdz-12

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to SDZ-12.

value: L4 larva

value: 71 hour

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS588TIJ at ENCODE; https://www.encodeproject.org/ENCBS588TIJ/


title: TF ChIP-seq from whole organism (ENCLB395AMU)

description:
https://www.encodeproject.org/experiments/ENCSR321YHE/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG1233-eGFP fusion proteins.
experiment encode accession: ENCSR321YHE
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR239LBE
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB395AMU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG1233

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS578GTG at ENCODE; https://www.encodeproject.org/ENCBS578GTG/


title: Control ChIP-seq from whole organism (ENCLB579IOY)

description:
https://www.encodeproject.org/experiments/ENCSR016AZO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing nhr-111-eGFP fusion proteins.
experiment encode accession: ENCSR016AZO
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB579IOY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP569 (unc-119(tm4063); wgIs569 [nhr-111::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex L4 larva (48 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans nhr-111

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-111.

value: 48 hour

value: Valerie Reinke, Yale

value: ENCBS644PXF at ENCODE; https://www.encodeproject.org/ENCBS644PXF/


title: TF ChIP-seq from whole organism (ENCLB230BMB)

description:
https://www.encodeproject.org/experiments/ENCSR266NAT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR266NAT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR091ZYU
encode release date: 2016-09-29
lab: Valerie Reinke, Yale
library encode accession: ENCLB230BMB
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite late embryo 4 hours post synchronization using egg bleaching insertion targeting C. elegans elt-2

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-2

value: hermaphrodite

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS702JLF at ENCODE; https://www.encodeproject.org/ENCBS702JLF/


title: Control ChIP-seq from whole organism (ENCLB536IMF)

description:
https://www.encodeproject.org/experiments/ENCSR195UEL/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing lin-54-eGFP fusion proteins.
experiment encode accession: ENCSR195UEL
assay title: Control ChIP-seq
assembly: ce11
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB536IMF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Caenorhabditis elegans strain OP743 (unc-119(tm4063); wgIs743 [lin-54::TY1::EGFP::3xFLAG(Fosmid: lin-54) + unc-119(+)]) mixed sex young adult (65 hours) at L1 larva starved after bleaching stage insertion targeting C. elegans lin-54

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-54.

value: pooled male and female

value: young adult

value: 65 hour

value: Valerie Reinke

value: L1 larva starved after bleaching

value: ENCBS223PCD at ENCODE; https://www.encodeproject.org/ENCBS223PCD/


title: TF ChIP-seq from whole organism (ENCLB772SXX)

description:
https://www.encodeproject.org/experiments/ENCSR264JKE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MXL-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264JKE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041BTW
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB772SXX
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP537 (unc-119(tm4063) III; wgIs537) hermaphrodite young adult 67 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans mxl-1

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to MXL-1

value: Valerie Reinke, Yale

value: ENCBS845ZJB at ENCODE; https://www.encodeproject.org/ENCBS845ZJB/


title: TF ChIP-seq from whole organism (ENCLB124YUE)

description:
https://www.encodeproject.org/experiments/ENCSR264JKE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing MXL-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR264JKE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041BTW
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB124YUE
fragmentation methods: sonication (generic microtip)

value: not applicable

value: hermaphrodite

value: ENCBS823OIK at ENCODE; https://www.encodeproject.org/ENCBS823OIK/


title: Control ChIP-seq from whole organism (ENCLB350YXI)

description:
https://www.encodeproject.org/experiments/ENCSR153GHW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing fkh-eGFP fusion proteins.
experiment encode accession: ENCSR153GHW
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB350YXI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fkh-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster fkh

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fkh

value: prepupa

value: 24 day

value: Kevin White, UChicago

value: Kevin White

value: ENCBS811KVH at ENCODE; https://www.encodeproject.org/ENCBS811KVH/


title: Mint-ChIP-seq from HCT116 (ENCLB716SBS)

description:
https://www.encodeproject.org/experiments/ENCSR821OKM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR821OKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508TCS
encode release date: 2022-07-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB716SBS

organism: Homo sapiens

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

tag: line

value: cell line

value: 48 year

value: male

tag: health state

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

tag: treatments

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS271TPC at ENCODE; https://www.encodeproject.org/ENCBS271TPC/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: TF ChIP-seq from whole organism (ENCLB800BRQ)

description:
https://www.encodeproject.org/experiments/ENCSR260GEE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ETS-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR260GEE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR187HHD
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB800BRQ
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP509 (unc-119(tm4063) III; wgIs509) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans ets-4

tag: antibody

value: whole organism

value: whole organisms

tag: biosample encode accession

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ETS-4

value: hermaphrodite

value: late embryonic

value: unknown

value: Valerie Reinke, Yale

value: Valerie Reinke

value: egg bleaching

value: hour

value: ENCBS371OLO at ENCODE; https://www.encodeproject.org/ENCBS371OLO/


title: TF ChIP-seq from whole organism (ENCLB911ZRS)

description:
https://www.encodeproject.org/experiments/ENCSR117TRB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-54-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR117TRB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR195UEL
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB911ZRS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

tag: collection date

tag: geographic location

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-54.

value: pooled male and female

value: young adult

value: 65 hour

value: L1 larva starved after bleaching

value: ENCBS915NTC at ENCODE; https://www.encodeproject.org/ENCBS915NTC/


title: Mint-ChIP-seq from HCT116 (ENCLB729GRS)

description:
https://www.encodeproject.org/experiments/ENCSR821OKM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR821OKM
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR508TCS
encode release date: 2022-07-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB729GRS

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS271TPC at ENCODE; https://www.encodeproject.org/ENCBS271TPC/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: TF ChIP-seq from whole organism (ENCLB122OYU)

description:
https://www.encodeproject.org/experiments/ENCSR117TRB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic worms expressing lin-54-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR117TRB
assay title: TF ChIP-seq
assembly: ce11
possible controls: ENCSR195UEL
encode release date: 2018-03-01
lab: Kevin White, UChicago
library encode accession: ENCLB122OYU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: not applicable

tag: encode accession

tag: note

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS628IZZ at ENCODE; https://www.encodeproject.org/ENCBS628IZZ/


title: TF ChIP-seq from whole organism (ENCLB914EEF)

description:
https://www.encodeproject.org/experiments/ENCSR260GEE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing ETS-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR260GEE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR187HHD
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB914EEF
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ETS-4

tag: Sex

value: hermaphrodite

tag: dev stage

value: late embryonic

value: unknown

value: egg bleaching

value: hour

value: ENCBS733BXL at ENCODE; https://www.encodeproject.org/ENCBS733BXL/


title: TF ChIP-seq from whole organism (ENCLB106FYF)

description:
https://www.encodeproject.org/experiments/ENCSR227BSJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR227BSJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR792YVU
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB106FYF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11504 mixed sex embryo (0-18 hours) insertion targeting D. melanogaster CG11504

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11504

value: pooled male and female

value: embryonic

tag: age

value: 0-18 hour

tag: lab

value: Kevin White, UChicago

value: Kevin White

value: ENCBS278ARV at ENCODE; https://www.encodeproject.org/ENCBS278ARV/


title: TF ChIP-seq from whole organism (ENCLB728ECF)

description:
https://www.encodeproject.org/experiments/ENCSR274WQG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing RBR-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR274WQG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR568HWW
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB728ECF
fragmentation methods: sonication (generic microtip)

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to RBR-2

value: L4 larva

value: Valerie Reinke, Yale

tag: source

tag: worm synchronization stage

value: L1 larva starved after bleaching

value: ENCBS228JVJ at ENCODE; https://www.encodeproject.org/ENCBS228JVJ/


title: TF ChIP-seq from whole organism (ENCLB006WOS)

description:
https://www.encodeproject.org/experiments/ENCSR227BSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR227BSJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR792YVU
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB006WOS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: ENCBS555YLS at ENCODE; https://www.encodeproject.org/ENCBS555YLS/


title: Mint-ChIP-seq from HCT116 (ENCLB602PQN)

description:
https://www.encodeproject.org/experiments/ENCSR790WQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR790WQH
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR873HRN
encode release date: 2022-07-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB602PQN

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: male

value: colorectal carcinoma

value: adult

value: Bradley Bernstein, Broad

value: Erez Aiden

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS403YHB at ENCODE; https://www.encodeproject.org/ENCBS403YHB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: TF ChIP-seq from whole organism (ENCLB548QZK)

description:
https://www.encodeproject.org/experiments/ENCSR359GJP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing F13H6.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR359GJP
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR095HSC
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB548QZK
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP471 (unc-119(tm4063) III; wgIs471) hermaphrodite L2 larva 22 hours post synchronization at L1 larva starved after bleaching stage insertion targeting C. elegans bcl-11

value: whole organism

value: whole organisms

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F13H6.1

value: hermaphrodite

value: L2 larva

value: unknown

value: Valerie Reinke

tag: post synchronization time

tag: post synchronization time units

value: hour

value: ENCBS273FQH at ENCODE; https://www.encodeproject.org/ENCBS273FQH/


title: Control ChIP-seq from whole organism (ENCLB111YFG)

description:
https://www.encodeproject.org/experiments/ENCSR010TRT/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing CHE-1-eGFP fusion proteins.
experiment encode accession: ENCSR010TRT
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-10-27
lab: Valerie Reinke, Yale
library encode accession: ENCLB111YFG
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP677 (unc-119(tm4063) III; wgIs677) mixed sex late embryo 6 hours post synchronization using egg bleaching insertion targeting C. elegans che-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to CHE-1

value: pooled male and female

value: late embryonic

value: Valerie Reinke, Yale

value: egg bleaching

tag: link

value: ENCBS766MBN at ENCODE; https://www.encodeproject.org/ENCBS766MBN/