title: TF ChIP-seq from whole organism (ENCLB633IUX)

description:
https://www.encodeproject.org/experiments/ENCSR631PLV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fru-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR631PLV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR117DPS
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB633IUX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: fru

value: whole organisms

value: D. mel line contraining an intronic eGFP exon to create a fru-GFP fusion gene

value: wandering third instar larva

value: Hugo Bellen

value: ENCBS529BVW at ENCODE; https://www.encodeproject.org/ENCBS529BVW/


title: Control ChIP-seq from whole organism (ENCLB494GAK)

status: Public on Feb 27 2024

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR626UBE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Myb-eGFP fusion proteins.
experiment encode accession: ENCSR626UBE
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB494GAK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Drosophila melanogaster

source_name: Drosophila melanogaster strain Myb-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Myb

value: whole organism

tag: biosample encode accession

tag: collection date

value: not applicable

tag: geographic location

tag: encode accession

tag: note

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Myb

tag: Sex

value: pooled male and female

tag: dev stage

value: embryonic

tag: age

value: 0-24 hour

tag: lab

value: Kevin White, UChicago

tag: source

value: Kevin White

tag: link

value: ENCBS209UHZ at ENCODE; https://www.encodeproject.org/ENCBS209UHZ/


title: TF ChIP-seq from whole organism (ENCLB686VTM)

description:
https://www.encodeproject.org/experiments/ENCSR795MVJ/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing B-H2-eGFP fusion proteins.
experiment encode accession: ENCSR795MVJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR051HCW
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB686VTM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain B-H2-GFP mixed sex embryo (6-22 hours) insertion targeting D. melanogaster B-H2

tag: antibody

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to B-H2

value: ENCBS807TYL at ENCODE; https://www.encodeproject.org/ENCBS807TYL/


title: Control ChIP-seq from whole organism (ENCLB456SIM)

description:
https://www.encodeproject.org/experiments/ENCSR625AVD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Pif1A-eGFP fusion proteins.
experiment encode accession: ENCSR625AVD
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB456SIM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pif1A-GFP mixed sex pupa insertion targeting D. melanogaster Pif1A

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pif1A

value: pupa

value: unknown

value: ENCBS221MWA at ENCODE; https://www.encodeproject.org/ENCBS221MWA/


title: TF ChIP-seq from whole organism (ENCLB937MCE)

description:
https://www.encodeproject.org/experiments/ENCSR965XSS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG9437-eGFP fusion proteins.
experiment encode accession: ENCSR965XSS
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR529PRD
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB937MCE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9437-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster hng1

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9437

value: 0-16 hour

value: ENCBS456ZXA at ENCODE; https://www.encodeproject.org/ENCBS456ZXA/


title: TF ChIP-seq from whole organism (ENCLB903TCA)

description:
https://www.encodeproject.org/experiments/ENCSR795MVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing B-H2-eGFP fusion proteins.
experiment encode accession: ENCSR795MVJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR051HCW
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB903TCA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: not applicable

value: ENCBS947OUZ at ENCODE; https://www.encodeproject.org/ENCBS947OUZ/


title: TF ChIP-seq from whole organism (ENCLB375EBN)

description:
https://www.encodeproject.org/experiments/ENCSR796JXT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11723-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR796JXT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR720HML
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB375EBN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11723-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG11723

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11723

value: pooled male and female

value: embryonic

value: ENCBS218FJP at ENCODE; https://www.encodeproject.org/ENCBS218FJP/


title: TF ChIP-seq from whole organism (ENCLB556MZO)

description:
https://www.encodeproject.org/experiments/ENCSR631PLV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fru-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR631PLV
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR117DPS
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB556MZO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fru-MiMIC-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster fru

value: fru

value: D. mel line contraining an intronic eGFP exon to create a fru-GFP fusion gene

value: wandering third instar larva

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS160QHX at ENCODE; https://www.encodeproject.org/ENCBS160QHX/


title: TF ChIP-seq from whole organism (ENCLB038KZD)

description:
https://www.encodeproject.org/experiments/ENCSR796JXT/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG11723-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR796JXT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR720HML
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB038KZD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Kevin White

value: ENCBS480BTZ at ENCODE; https://www.encodeproject.org/ENCBS480BTZ/


title: TF ChIP-seq from whole organism (ENCLB065GVI)

description:
https://www.encodeproject.org/experiments/ENCSR055MVE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-sma-9 in L2 larva worms.
experiment encode accession: ENCSR055MVE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR247VJA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB065GVI
size range: 150-350

organism: Caenorhabditis elegans

source_name: Caenorhabditis elegans strain OP130 (unc-119(ed3) III; wgIs130) mixed sex L2 larva insertion targeting C. elegans sma-9

extract_protocol: not provided

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS707FXG at ENCODE; https://www.encodeproject.org/ENCBS707FXG/


title: TF ChIP-seq from whole organism (ENCLB319NCA)

description:
https://www.encodeproject.org/experiments/ENCSR968GUV/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG10669-eGFP fusion proteins.
experiment encode accession: ENCSR968GUV
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR283MGP
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB319NCA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10669-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster CG10669

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10669

value: pooled male and female

value: prepupa

value: 24 day

value: ENCBS435VYB at ENCODE; https://www.encodeproject.org/ENCBS435VYB/


title: TF ChIP-seq from whole organism (ENCLB349PVQ)

description:
https://www.encodeproject.org/experiments/ENCSR794HZG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing HmgZ-eGFP fusion proteins.
experiment encode accession: ENCSR794HZG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR827FFL
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB349PVQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HmgZ mixed sex embryo (4-24 hours) insertion targeting D. melanogaster HmgZ

value: HmgZ

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgZ

value: embryonic

value: Kevin White, UChicago

value: ENCBS324UGN at ENCODE; https://www.encodeproject.org/ENCBS324UGN/


title: TF ChIP-seq from whole organism (ENCLB261OED)

description:
https://www.encodeproject.org/experiments/ENCSR796DJB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR796DJB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR527STB
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB261OED
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fd96Cb embryo (0-24 hours) insertion targeting D. melanogaster fd96Cb

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd96Cb

value: not collected

value: 0-24 hour

value: Kevin White

value: ENCBS902PVK at ENCODE; https://www.encodeproject.org/ENCBS902PVK/


title: TF ChIP-seq from whole organism (ENCLB358LWO)

description:
https://www.encodeproject.org/experiments/ENCSR055MVE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-sma-9 in L2 larva worms.
experiment encode accession: ENCSR055MVE
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR247VJA
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB358LWO
size range: 150-350

value: whole organism

value: not applicable

value: L2 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS861RZG at ENCODE; https://www.encodeproject.org/ENCBS861RZG/


title: Control ChIP-seq from whole organism (ENCLB748PXA)

description:
https://www.encodeproject.org/experiments/ENCSR334LDM/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR334LDM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB748PXA
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP318 (unc-119(ed3) III; wgIs318) mixed sex L1 larva insertion targeting C. elegans nhr-12

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-12

value: pooled male and female

value: L1 larva

value: Michael Snyder

value: ENCBS609IRP at ENCODE; https://www.encodeproject.org/ENCBS609IRP/


title: TF ChIP-seq from whole organism (ENCLB396PAP)

description:
https://www.encodeproject.org/experiments/ENCSR964YKJ/
***************
biological replicate number: 7
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR964YKJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR941FHT
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB396PAP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG12769 mixed sex embryo (10-24 hours) insertion targeting D. melanogaster CG12769

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12769

value: embryonic

value: Kevin White, UChicago

value: ENCBS935HCK at ENCODE; https://www.encodeproject.org/ENCBS935HCK/


title: Control ChIP-seq from whole organism (ENCLB895SFY)

description:
https://www.encodeproject.org/experiments/ENCSR334LDM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR334LDM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB895SFY
fragmentation methods: sonication (generic microtip)

value: whole organism

value: ENCBS791GDR at ENCODE; https://www.encodeproject.org/ENCBS791GDR/


title: TF ChIP-seq from whole organism (ENCLB413MEK)

description:
https://www.encodeproject.org/experiments/ENCSR796DJB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR796DJB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR527STB
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB413MEK
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fd96Cb

value: not collected

value: 0-24 hour

value: Kevin White

value: ENCBS410RIB at ENCODE; https://www.encodeproject.org/ENCBS410RIB/


title: Control ChIP-seq from whole organism (ENCLB579PEU)

description:
https://www.encodeproject.org/experiments/ENCSR239PCG/
***************
biological replicate number: 3
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR239PCG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB579PEU
size range: 150-350

source_name: Caenorhabditis elegans strain MT10430 (lin-35(n745) I) mixed sex L1 larva whole organism

value: pooled male and female

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS497KZB at ENCODE; https://www.encodeproject.org/ENCBS497KZB/


title: Control ChIP-seq from whole organism (ENCLB178NOR)

description:
https://www.encodeproject.org/experiments/ENCSR792YVU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR792YVU
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB178NOR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG11504 mixed sex embryo (0-18 hours) insertion targeting D. melanogaster CG11504

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG11504

value: 0-18 hour

value: ENCBS402LFO at ENCODE; https://www.encodeproject.org/ENCBS402LFO/


title: Control ChIP-seq from whole organism (ENCLB198AJW)

description:
https://www.encodeproject.org/experiments/ENCSR239PCG/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR239PCG
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB198AJW
size range: 150-350

value: whole organism

value: L1 larva

value: ENCBS465HPX at ENCODE; https://www.encodeproject.org/ENCBS465HPX/


title: TF ChIP-seq from whole organism (ENCLB917LEH)

description:
https://www.encodeproject.org/experiments/ENCSR741KZZ/
***************
biological replicate number: 4
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ftz-f1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR741KZZ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR576JSM
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB917LEH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ftz-f1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster ftz-f1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ftz-f1

value: embryonic

value: Kevin White, UChicago

value: ENCBS241YWP at ENCODE; https://www.encodeproject.org/ENCBS241YWP/


title: TF ChIP-seq from whole organism (ENCLB724GTR)

description:
https://www.encodeproject.org/experiments/ENCSR745UIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR745UIJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR398PIP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB724GTR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Sox14-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster Sox14

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox14

value: pooled male and female

value: prepupa

value: Kevin White

tag: fly synchronization stage

value: white prepupa

value: ENCBS217AKE at ENCODE; https://www.encodeproject.org/ENCBS217AKE/


title: TF ChIP-seq from whole organism (ENCLB739JXI)

description:
https://www.encodeproject.org/experiments/ENCSR964YKJ/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR964YKJ
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR941FHT
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB739JXI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG12769

value: ENCBS647FMP at ENCODE; https://www.encodeproject.org/ENCBS647FMP/


title: Control ChIP-seq from whole organism (ENCLB726OIT)

description:
https://www.encodeproject.org/experiments/ENCSR964CND/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG6683-eGFP fusion proteins.
experiment encode accession: ENCSR964CND
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-12-13
lab: Kevin White, UChicago
library encode accession: ENCLB726OIT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6683-GFP mixed sex embryo (6-24 hours) insertion targeting D. melanogaster CG6683

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6683

value: ENCBS813KMP at ENCODE; https://www.encodeproject.org/ENCBS813KMP/


title: Control ChIP-seq from whole organism (ENCLB365OSH)

description:
https://www.encodeproject.org/experiments/ENCSR962NZG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG17912-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR962NZG
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB365OSH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG17912-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster BuGZ

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG17912

value: 0-16 hour

value: ENCBS458XET at ENCODE; https://www.encodeproject.org/ENCBS458XET/


title: Control ChIP-seq from whole organism (ENCLB052TCG)

description:
https://www.encodeproject.org/experiments/ENCSR962PQM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Pita-eGFP fusion proteins.
experiment encode accession: ENCSR962PQM
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB052TCG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Pita-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster pita

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Pita

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS269QQB at ENCODE; https://www.encodeproject.org/ENCBS269QQB/


title: Control ChIP-seq from whole organism (ENCLB625MPP)

description:
https://www.encodeproject.org/experiments/ENCSR049ZVB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR049ZVB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB625MPP
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L1 larva insertion targeting C. elegans unc-62

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS275VQB at ENCODE; https://www.encodeproject.org/ENCBS275VQB/


title: TF ChIP-seq from whole organism (ENCLB852ZEQ)

description:
https://www.encodeproject.org/experiments/ENCSR745UIJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR745UIJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR398PIP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB852ZEQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox14

value: prepupa

value: Kevin White

value: white prepupa

value: ENCBS629UXL at ENCODE; https://www.encodeproject.org/ENCBS629UXL/


title: TF ChIP-seq from whole organism (ENCLB150VZE)

description:
https://www.encodeproject.org/experiments/ENCSR792RAL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR792RAL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR333QIL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB150VZE
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG9817 embryo (10-24 hours) insertion targeting D. melanogaster CG43347

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9817

value: not collected

value: embryonic

value: ENCBS806FVL at ENCODE; https://www.encodeproject.org/ENCBS806FVL/


title: TF ChIP-seq from whole organism (ENCLB572KIO)

description:
https://www.encodeproject.org/experiments/ENCSR416MJQ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing da-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR416MJQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR515BLI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB572KIO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain da-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster da

value: da

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to da

value: pooled male and female

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS610TLP at ENCODE; https://www.encodeproject.org/ENCBS610TLP/


title: TF ChIP-seq from whole organism (ENCLB924LCX)

description:
https://www.encodeproject.org/experiments/ENCSR792RAL/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR792RAL
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR333QIL
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB924LCX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: ENCBS618FMY at ENCODE; https://www.encodeproject.org/ENCBS618FMY/


title: TF ChIP-seq from whole organism (ENCLB883ZOF)

description:
https://www.encodeproject.org/experiments/ENCSR418YJE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3919-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR418YJE
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR810HCI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB883ZOF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Drosophila melanogaster strain CG3919-GFP mixed sex prepupa insertion targeting D. melanogaster CG3919

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3919

value: prepupa

value: unknown

value: Kevin White

value: ENCBS228GZC at ENCODE; https://www.encodeproject.org/ENCBS228GZC/


title: TF ChIP-seq from whole organism (ENCLB746QUQ)

description:
https://www.encodeproject.org/experiments/ENCSR660AYK/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6854-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR660AYK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR431JLY
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB746QUQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6854-GFP mixed sex prepupa insertion targeting D. melanogaster CTPsyn

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6854

value: ENCBS424UQZ at ENCODE; https://www.encodeproject.org/ENCBS424UQZ/


title: Control ChIP-seq from whole organism (ENCLB566QUE)

description:
https://www.encodeproject.org/experiments/ENCSR333PLH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR333PLH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB566QUE
size range: 150-350

source_name: Caenorhabditis elegans strain OP70 (unc-119(ed3) III; wgIs70) mixed sex mixed stage (embryo) insertion targeting C. elegans mep-1

value: mixed stage (embryonic)

value: Michael Snyder, Stanford

value: CGC

value: ENCBS918DSF at ENCODE; https://www.encodeproject.org/ENCBS918DSF/


title: TF ChIP-seq from whole organism (ENCLB485TUI)

description:
https://www.encodeproject.org/experiments/ENCSR609RLI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mio-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR609RLI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR855KRW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB485TUI
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Mio-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Mondo

value: Mio

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mio

value: pooled male and female

value: wandering third instar larva

value: Kevin White, UChicago

value: ENCBS725WWE at ENCODE; https://www.encodeproject.org/ENCBS725WWE/


title: TF ChIP-seq from whole organism (ENCLB065GGD)

description:
https://www.encodeproject.org/experiments/ENCSR660AYK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6854-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR660AYK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR431JLY
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB065GGD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: whole organisms

value: prepupa

value: ENCBS445JLD at ENCODE; https://www.encodeproject.org/ENCBS445JLD/


title: Control ChIP-seq from whole organism (ENCLB368KCS)

description:
https://www.encodeproject.org/experiments/ENCSR728LLK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hr51-eGFP fusion proteins.
experiment encode accession: ENCSR728LLK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB368KCS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Dhr51-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Hr51

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr51

value: embryonic

value: 0-24 hour

value: Kevin White

value: ENCBS080SGK at ENCODE; https://www.encodeproject.org/ENCBS080SGK/


title: TF ChIP-seq from whole organism (ENCLB087JRO)

description:
https://www.encodeproject.org/experiments/ENCSR788JUU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR788JUU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR978EBX
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB087JRO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Spps embryo (0-12 hours) insertion targeting D. melanogaster Spps

value: Spps

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Spps

value: not collected

value: 0-12 hour

value: ENCBS245PTJ at ENCODE; https://www.encodeproject.org/ENCBS245PTJ/


title: TF ChIP-seq from whole organism (ENCLB130AYL)

description:
https://www.encodeproject.org/experiments/ENCSR788JUU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR788JUU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR978EBX
encode release date: 2018-09-26
lab: Kevin White, UChicago
library encode accession: ENCLB130AYL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Kevin White, UChicago

value: ENCBS885IQX at ENCODE; https://www.encodeproject.org/ENCBS885IQX/


title: TF ChIP-seq from whole organism (ENCLB792YGV)

description:
https://www.encodeproject.org/experiments/ENCSR330VDT/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L1 larva worms.
experiment encode accession: ENCSR330VDT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR049ZVB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB792YGV
size range: 150-350

value: whole organism

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS275VQB at ENCODE; https://www.encodeproject.org/ENCBS275VQB/


title: TF ChIP-seq from whole organism (ENCLB310XCD)

description:
https://www.encodeproject.org/experiments/ENCSR794HZG/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing HmgZ-eGFP fusion proteins.
experiment encode accession: ENCSR794HZG
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR827FFL
encode release date: 2018-06-12
lab: Kevin White, UChicago
library encode accession: ENCLB310XCD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain HmgZ mixed sex embryo (4-24 hours) insertion targeting D. melanogaster HmgZ

value: HmgZ

value: whole organisms

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to HmgZ

value: embryonic

value: ENCBS322NVE at ENCODE; https://www.encodeproject.org/ENCBS322NVE/


title: TF ChIP-seq from whole organism (ENCLB101CRZ)

description:
https://www.encodeproject.org/experiments/ENCSR790NPU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8159-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR790NPU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR825QUN
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB101CRZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster mixed sex pupa (24 hours) insertion targeting D. melanogaster CG8159

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8159

value: pupa

value: 24 hour

value: Kevin White

value: ENCBS051NEV at ENCODE; https://www.encodeproject.org/ENCBS051NEV/


title: TF ChIP-seq from whole organism (ENCLB331CXX)

description:
https://www.encodeproject.org/experiments/ENCSR790NPU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8159-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR790NPU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR825QUN
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB331CXX
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: pooled male and female

value: Kevin White, UChicago

value: ENCBS249ZPA at ENCODE; https://www.encodeproject.org/ENCBS249ZPA/


title: TF ChIP-seq from whole organism (ENCLB227NCB)

description:
https://www.encodeproject.org/experiments/ENCSR745UIJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Sox14-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR745UIJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR398PIP
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB227NCB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Sox14

value: prepupa

value: unknown

value: white prepupa

value: ENCBS865EWM at ENCODE; https://www.encodeproject.org/ENCBS865EWM/


title: Control ChIP-seq from whole organism (ENCLB417WMI)

description:
https://www.encodeproject.org/experiments/ENCSR049ZVB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR049ZVB
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB417WMI
size range: 150-350

value: whole organisms

value: not applicable

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS261DIL at ENCODE; https://www.encodeproject.org/ENCBS261DIL/


title: TF ChIP-seq from whole organism (ENCLB191VPN)

description:
https://www.encodeproject.org/experiments/ENCSR786ALB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fkh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR786ALB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR153GHW
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB191VPN
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain fkh-GFP mixed sex prepupa (24 days) insertion targeting D. melanogaster fkh

value: fkh

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fkh

value: 24 day

value: Kevin White

value: ENCBS438UVS at ENCODE; https://www.encodeproject.org/ENCBS438UVS/


title: TF ChIP-seq from whole organism (ENCLB679DXP)

description:
https://www.encodeproject.org/experiments/ENCSR790NPU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8159-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR790NPU
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR825QUN
encode release date: 2018-12-21
lab: Kevin White, UChicago
library encode accession: ENCLB679DXP
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8159

value: pooled male and female

value: pupa

value: 24 hour

value: Kevin White, UChicago

value: ENCBS942WZG at ENCODE; https://www.encodeproject.org/ENCBS942WZG/


title: TF ChIP-seq from whole organism (ENCLB846RTT)

description:
https://www.encodeproject.org/experiments/ENCSR786ALB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fkh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR786ALB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR153GHW
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB846RTT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: not applicable

value: prepupa

value: ENCBS481AEY at ENCODE; https://www.encodeproject.org/ENCBS481AEY/


title: TF ChIP-seq from whole organism (ENCLB017LSD)

description:
https://www.encodeproject.org/experiments/ENCSR416MJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing da-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR416MJQ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR515BLI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB017LSD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: da

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to da

value: embryonic

value: 0-24 hour

value: ENCBS917PXN at ENCODE; https://www.encodeproject.org/ENCBS917PXN/


title: TF ChIP-seq from whole organism (ENCLB514DWA)

description:
https://www.encodeproject.org/experiments/ENCSR658VWK/
***************
biological replicate number: 4
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing scrt-eGFP fusion proteins.
experiment encode accession: ENCSR658VWK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR470WSI
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB514DWA
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain scrt-GFP mixed sex embryo (4-24 hours) insertion targeting D. melanogaster scrt

value: scrt

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to scrt

value: Kevin White

value: ENCBS390BBC at ENCODE; https://www.encodeproject.org/ENCBS390BBC/


title: TF ChIP-seq from whole organism (ENCLB688MSV)

description:
https://www.encodeproject.org/experiments/ENCSR789TLW/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13296-eGFP fusion proteins.
experiment encode accession: ENCSR789TLW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR402PIT
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB688MSV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG13296-GFP mixed sex embryo (6-18 hours) insertion targeting D. melanogaster CG13296

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13296

value: pooled male and female

value: ENCBS774FTA at ENCODE; https://www.encodeproject.org/ENCBS774FTA/


title: Control ChIP-seq from whole organism (ENCLB894DLG)

description:
https://www.encodeproject.org/experiments/ENCSR603RRK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins.
experiment encode accession: ENCSR603RRK
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2018-02-15
lab: Kevin White, UChicago
library encode accession: ENCLB894DLG
fragmentation methods: sonication (Bioruptor generic)
size range: 175-250

source_name: Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster psq

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: wandering third instar larva

value: unknown

value: Kevin White, UChicago

value: ENCBS884YKV at ENCODE; https://www.encodeproject.org/ENCBS884YKV/


title: TF ChIP-seq from whole organism (ENCLB216XHM)

description:
https://www.encodeproject.org/experiments/ENCSR789TLW/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13296-eGFP fusion proteins.
experiment encode accession: ENCSR789TLW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR402PIT
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB216XHM
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: embryonic

value: ENCBS475KBM at ENCODE; https://www.encodeproject.org/ENCBS475KBM/


title: TF ChIP-seq from whole organism (ENCLB516TEP)

description:
https://www.encodeproject.org/experiments/ENCSR239JQU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-129 in L2 larva worms.
experiment encode accession: ENCSR239JQU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR767NKE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB516TEP
size range: 150-350

source_name: Caenorhabditis elegans strain OP339 (unc-119(ed3) III; wgIs339) mixed sex L2 larva insertion targeting C. elegans nhr-129

value: L2 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS751DFH at ENCODE; https://www.encodeproject.org/ENCBS751DFH/


title: Control ChIP-seq from whole organism (ENCLB675LMS)

description:
https://www.encodeproject.org/experiments/ENCSR333PLH/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in mixed stage (embryonic) worms.
experiment encode accession: ENCSR333PLH
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB675LMS
size range: 150-350

value: whole organism

value: mixed stage (embryonic)

value: ENCBS703LWN at ENCODE; https://www.encodeproject.org/ENCBS703LWN/


title: TF ChIP-seq from whole organism (ENCLB186XAB)

description:
https://www.encodeproject.org/experiments/ENCSR789TLW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG13296-eGFP fusion proteins.
experiment encode accession: ENCSR789TLW
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR402PIT
encode release date: 2018-02-05
lab: Kevin White, UChicago
library encode accession: ENCLB186XAB
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG13296

value: pooled male and female

value: Kevin White

value: ENCBS942DJW at ENCODE; https://www.encodeproject.org/ENCBS942DJW/


title: TF ChIP-seq from whole organism (ENCLB918LBN)

description:
https://www.encodeproject.org/experiments/ENCSR239JQU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-nhr-129 in L2 larva worms.
experiment encode accession: ENCSR239JQU
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR767NKE
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB918LBN
size range: 150-350

value: whole organisms

value: unknown

value: ENCBS091KAY at ENCODE; https://www.encodeproject.org/ENCBS091KAY/


title: TF ChIP-seq from whole organism (ENCLB163XTA)

description:
https://www.encodeproject.org/experiments/ENCSR609RLI/
***************
biological replicate number: 5
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Mio-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR609RLI
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR855KRW
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB163XTA
fragmentation methods: sonication (Bioruptor generic)

value: Mio

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Mio

value: wandering third instar larva

value: Kevin White, UChicago

value: ENCBS193RYU at ENCODE; https://www.encodeproject.org/ENCBS193RYU/


title: TF ChIP-seq from whole organism (ENCLB760XCL)

description:
https://www.encodeproject.org/experiments/ENCSR237CAI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-egl-5 in L3 larva worms.
experiment encode accession: ENCSR237CAI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR443MCM
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB760XCL
size range: 150-350
instrument models: Illumina Genome Analyzer IIx,Illumina Genome Analyzer

source_name: Caenorhabditis elegans strain OP54 (unc-119(ed3) III; wgIs54) mixed sex L3 larva insertion targeting C. elegans egl-5

value: L3 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS696RBX at ENCODE; https://www.encodeproject.org/ENCBS696RBX/


title: Control ChIP-seq from whole organism (ENCLB075NLS)

description:
https://www.encodeproject.org/experiments/ENCSR655VMI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Vsx1-eGFP fusion proteins.
experiment encode accession: ENCSR655VMI
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB075NLS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Vsx1-GFP mixed sex embryo (0-18 hours) insertion targeting D. melanogaster Vsx1

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Vsx1

value: embryonic

value: 0-18 hour

value: ENCBS473MME at ENCODE; https://www.encodeproject.org/ENCBS473MME/


title: Control ChIP-seq from whole organism (ENCLB947HNG)

description:
https://www.encodeproject.org/experiments/ENCSR782KIM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR782KIM
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-23
lab: Kevin White, UChicago
library encode accession: ENCLB947HNG
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG2678 mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG2678

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG2678

value: pooled male and female

value: 0-24 hour

value: Kevin White

value: ENCBS258QXV at ENCODE; https://www.encodeproject.org/ENCBS258QXV/


title: Control ChIP-seq from whole organism (ENCLB425OYQ)

description:
https://www.encodeproject.org/experiments/ENCSR608LKO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Hr4-eGFP fusion proteins.
experiment encode accession: ENCSR608LKO
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB425OYQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Hr4-GFP mixed sex prepupa (48 days) at white prepupa stage insertion targeting D. melanogaster Hr4

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Hr4

value: prepupa

value: 48 day

value: Kevin White, UChicago

value: white prepupa

value: ENCBS661LPL at ENCODE; https://www.encodeproject.org/ENCBS661LPL/


title: Control ChIP-seq from whole organism (ENCLB103NDW)

description:
https://www.encodeproject.org/experiments/ENCSR653VKU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG16779-eGFP fusion proteins.
experiment encode accession: ENCSR653VKU
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB103NDW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG16779-MiMIC mixed sex prepupa insertion targeting D. melanogaster CG16779

value: whole organism

value: D. mel line contraining an intronic eGFP exon to create a CG16779-GFP fusion gene

value: unknown

value: Hugo Bellen

value: ENCBS743DZW at ENCODE; https://www.encodeproject.org/ENCBS743DZW/


title: Control ChIP-seq from whole organism (ENCLB506VFD)

description:
https://www.encodeproject.org/experiments/ENCSR167WDQ/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing F23B12.7-eGFP fusion proteins.
experiment encode accession: ENCSR167WDQ
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB506VFD
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP429 (unc-119(tm4063) III; wgIs429) hermaphrodite young adult insertion targeting C. elegans F23B12.7

value: whole organisms

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to F23B12-7

value: hermaphrodite

value: young adult

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS932XOS at ENCODE; https://www.encodeproject.org/ENCBS932XOS/


title: TF ChIP-seq from whole organism (ENCLB204DZV)

description:
https://www.encodeproject.org/experiments/ENCSR786ALB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing fkh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR786ALB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR153GHW
encode release date: 2017-01-11
lab: Kevin White, UChicago
library encode accession: ENCLB204DZV
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: fkh

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to fkh

value: pooled male and female

value: prepupa

value: 24 day

value: Kevin White

value: ENCBS417QFJ at ENCODE; https://www.encodeproject.org/ENCBS417QFJ/


title: TF ChIP-seq from whole organism (ENCLB711CAH)

description:
https://www.encodeproject.org/experiments/ENCSR330VDT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-unc-62 in L1 larva worms.
experiment encode accession: ENCSR330VDT
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR049ZVB
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB711CAH
size range: 150-350

source_name: Caenorhabditis elegans strain OP600 (unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)) mixed sex L1 larva insertion targeting C. elegans unc-62

value: whole organism

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS261DIL at ENCODE; https://www.encodeproject.org/ENCBS261DIL/


title: Control ChIP-seq from whole organism (ENCLB225XFR)

description:
https://www.encodeproject.org/experiments/ENCSR605LPC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing CG18476-eGFP fusion proteins.
experiment encode accession: ENCSR605LPC
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB225XFR
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG18476-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG18476

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG18476

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS230JTL at ENCODE; https://www.encodeproject.org/ENCBS230JTL/


title: Control ChIP-seq from whole organism (ENCLB937OQT)

description:
https://www.encodeproject.org/experiments/ENCSR785TKF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR785TKF
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB937OQT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain pros-GFP mixed sex embryo (2-18 hours) insertion targeting D. melanogaster pros

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to pros

value: pooled male and female

value: ENCBS891KML at ENCODE; https://www.encodeproject.org/ENCBS891KML/


title: TF ChIP-seq from whole organism (ENCLB076WKF)

description:
https://www.encodeproject.org/experiments/ENCSR658VWK/
***************
biological replicate number: 3
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing scrt-eGFP fusion proteins.
experiment encode accession: ENCSR658VWK
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR470WSI
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB076WKF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: scrt

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to scrt

value: Kevin White

value: ENCBS874JVA at ENCODE; https://www.encodeproject.org/ENCBS874JVA/


title: TF ChIP-seq from whole organism (ENCLB099FXC)

description:
https://www.encodeproject.org/experiments/ENCSR167DJO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against NHR-76 in embryonic worms.
experiment encode accession: ENCSR167DJO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR487JHP
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB099FXC
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP203 (unc-119(ed3) III; wgIs203) mixed sex mixed stage (embryo) insertion targeting C. elegans nhr-76

value: whole organism

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-76

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS030FYZ at ENCODE; https://www.encodeproject.org/ENCBS030FYZ/


title: TF ChIP-seq from whole organism (ENCLB088EID)

description:
https://www.encodeproject.org/experiments/ENCSR603QIJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing emc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603QIJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR961MTI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB088EID
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain emc-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster emc

value: emc

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to emc

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS609FGG at ENCODE; https://www.encodeproject.org/ENCBS609FGG/


title: Control ChIP-seq from whole organism (ENCLB342EZI)

description:
https://www.encodeproject.org/experiments/ENCSR602FMN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing esn-eGFP fusion proteins.
experiment encode accession: ENCSR602FMN
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB342EZI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain esn-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster esn

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to esn

value: pooled male and female

value: prepupa

value: white prepupa

value: ENCBS058YCA at ENCODE; https://www.encodeproject.org/ENCBS058YCA/


title: TF ChIP-seq from whole organism (ENCLB272UJF)

description:
https://www.encodeproject.org/experiments/ENCSR603QIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing emc-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR603QIJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR961MTI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB272UJF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Kevin White

value: ENCBS258EJI at ENCODE; https://www.encodeproject.org/ENCBS258EJI/


title: TF ChIP-seq from whole organism (ENCLB993HUV)

description:
https://www.encodeproject.org/experiments/ENCSR167DJO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against NHR-76 in embryonic worms.
experiment encode accession: ENCSR167DJO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR487JHP
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB993HUV
fragmentation methods: sonication (generic microtip)

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NHR-76

value: mixed stage (embryonic)

value: unknown

value: Michael Snyder, Stanford

value: Michael Snyder

value: ENCBS867DQB at ENCODE; https://www.encodeproject.org/ENCBS867DQB/


title: TF ChIP-seq from whole organism (ENCLB576BQD)

description:
https://www.encodeproject.org/experiments/ENCSR776VNR/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR776VNR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR136DEQ
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB576BQD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gcm-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster gcm

value: gcm

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gcm

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: ENCBS743OXY at ENCODE; https://www.encodeproject.org/ENCBS743OXY/


title: Control ChIP-seq from whole organism (ENCLB307MUR)

description:
https://www.encodeproject.org/experiments/ENCSR328LRC/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing ELT-1-eGFP fusion proteins.
experiment encode accession: ENCSR328LRC
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB307MUR
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP354 (unc-119(tm4063) III; wgIs354) hermaphrodite mixed stage (embryo) insertion targeting C. elegans elt-1

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to ELT-1

value: hermaphrodite

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS043UBO at ENCODE; https://www.encodeproject.org/ENCBS043UBO/


title: TF ChIP-seq from whole organism (ENCLB451UTU)

description:
https://www.encodeproject.org/experiments/ENCSR450VJF/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10543-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450VJF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR606GBZ
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB451UTU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10543-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10543

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10543

value: pooled male and female

value: 0-24 hour

value: Kevin White

value: ENCBS372LOD at ENCODE; https://www.encodeproject.org/ENCBS372LOD/


title: Control ChIP-seq from whole organism (ENCLB378HHM)

description:
https://www.encodeproject.org/experiments/ENCSR165EZK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR165EZK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB378HHM
size range: 150-350

source_name: Caenorhabditis elegans strain OP105 (unc119(ed3);wgIs105(dpl-1::TY1 EGFP FLAG;unc119)) mixed sex L1 larva insertion targeting C. elegans dpl-1

value: whole organisms

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS934TYT at ENCODE; https://www.encodeproject.org/ENCBS934TYT/


title: Control ChIP-seq from whole organism (ENCLB698LWY)

description:
https://www.encodeproject.org/experiments/ENCSR657JFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing MTF-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR657JFQ
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2018-02-06
lab: Kevin White, UChicago
library encode accession: ENCLB698LWY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain MTF-1-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster MTF-1

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to MTF-1

value: embryonic

value: Kevin White, UChicago

value: ENCBS322LYH at ENCODE; https://www.encodeproject.org/ENCBS322LYH/


title: TF ChIP-seq from whole organism (ENCLB730QOF)

description:
https://www.encodeproject.org/experiments/ENCSR450HPD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bsh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450HPD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR541KJI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB730QOF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain bsh-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster bsh

value: bsh

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to bsh

value: ENCBS226CLG at ENCODE; https://www.encodeproject.org/ENCBS226CLG/


title: Control ChIP-seq from whole organism (ENCLB738WYU)

description:
https://www.encodeproject.org/experiments/ENCSR531CCR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR531CCR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-09-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB738WYU
size range: 150-350

source_name: Caenorhabditis elegans strain OP81 (unc-119(ed3) III; wgIs81) mixed sex L3 larva insertion targeting C. elegans eor-1

value: pooled male and female

value: L3 larva

value: ENCBS027ZHP at ENCODE; https://www.encodeproject.org/ENCBS027ZHP/


title: TF ChIP-seq from whole organism (ENCLB978IEW)

description:
https://www.encodeproject.org/experiments/ENCSR410UOB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Eip75B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR410UOB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR135XHQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB978IEW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Eip75B-MiMIC-GFP mixed sex prepupa insertion targeting D. melanogaster Eip75B

value: whole organisms

value: D. mel line contraining an intronic eGFP exon to create a Eip75B-GFP fusion gene

value: prepupa

value: Hugo Bellen

value: ENCBS166WBX at ENCODE; https://www.encodeproject.org/ENCBS166WBX/


title: TF ChIP-seq from whole organism (ENCLB932JQB)

description:
https://www.encodeproject.org/experiments/ENCSR048MPV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in L1 larva worms.
experiment encode accession: ENCSR048MPV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR114XOX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB932JQB
size range: 150-350

source_name: Caenorhabditis elegans strain OP102 (unc-119(tm4063) III; wgIs102) mixed sex L1 larva insertion targeting C. elegans mep-1

value: not applicable

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS851BHP at ENCODE; https://www.encodeproject.org/ENCBS851BHP/


title: TF ChIP-seq from whole organism (ENCLB862EKY)

description:
https://www.encodeproject.org/experiments/ENCSR450HPD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing bsh-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450HPD
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR541KJI
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB862EKY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: bsh

value: whole organism

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS349CWV at ENCODE; https://www.encodeproject.org/ENCBS349CWV/


title: TF ChIP-seq from whole organism (ENCLB043NVY)

description:
https://www.encodeproject.org/experiments/ENCSR410UOB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Eip75B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR410UOB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR135XHQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB043NVY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organisms

value: D. mel line contraining an intronic eGFP exon to create a Eip75B-GFP fusion gene

value: pooled male and female

value: ENCBS424OOO at ENCODE; https://www.encodeproject.org/ENCBS424OOO/


title: TF ChIP-seq from whole organism (ENCLB278JOS)

description:
https://www.encodeproject.org/experiments/ENCSR971HHI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-lin-11 in L2 larva worms.
experiment encode accession: ENCSR971HHI
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR372VPK
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB278JOS
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP62 (unc-119(ed3) III; wgIs62) mixed sex L2 larva insertion targeting C. elegans lin-11

value: not applicable

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIN-11

value: L2 larva

value: Michael Snyder

value: ENCBS522WOL at ENCODE; https://www.encodeproject.org/ENCBS522WOL/


title: TF ChIP-seq from whole organism (ENCLB457HHD)

description:
https://www.encodeproject.org/experiments/ENCSR164BYW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-hpl-2 in L1 larva worms.
experiment encode accession: ENCSR164BYW
assay title: TF ChIP-seq
possible controls: ENCSR581MER
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB457HHD
size range: 150-350

source_name: Caenorhabditis elegans strain YL416 (unc119(ed3)III; vrIs64[pGES-1::HPL-2::GFP FLAG: HPL-2 3'UTR, unc-119 (+)]) mixed sex L1 larva insertion targeting C. elegans hpl-2

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS203KDU at ENCODE; https://www.encodeproject.org/ENCBS203KDU/


title: TF ChIP-seq from whole organism (ENCLB191OOT)

description:
https://www.encodeproject.org/experiments/ENCSR450VJF/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10543-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450VJF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR606GBZ
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB191OOT
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10543

value: embryonic

value: 0-24 hour

value: Kevin White, UChicago

value: ENCBS189WMU at ENCODE; https://www.encodeproject.org/ENCBS189WMU/


title: TF ChIP-seq from whole organism (ENCLB814HRQ)

description:
https://www.encodeproject.org/experiments/ENCSR775WXN/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Meics-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR775WXN
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR552ODH
encode release date: 2017-01-10
lab: Kevin White, UChicago
library encode accession: ENCLB814HRQ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain Meics-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Meics

value: Meics

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Meics

value: pooled male and female

value: Kevin White

value: ENCBS229MTK at ENCODE; https://www.encodeproject.org/ENCBS229MTK/


title: TF ChIP-seq from whole organism (ENCLB755LZK)

description:
https://www.encodeproject.org/experiments/ENCSR903DUB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR903DUB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR603RRK
encode release date: 2018-02-15
lab: Kevin White, UChicago
library encode accession: ENCLB755LZK
fragmentation methods: sonication (Bioruptor generic)
size range: 175-250

source_name: Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster psq

value: psq

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: wandering third instar larva

value: ENCBS846YKG at ENCODE; https://www.encodeproject.org/ENCBS846YKG/


title: Control ChIP-seq from whole organism (ENCLB694JCZ)

description:
https://www.encodeproject.org/experiments/ENCSR531CCR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L3 larva worms.
experiment encode accession: ENCSR531CCR
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-09-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB694JCZ
size range: 150-350

value: whole organism

value: L3 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS634DWU at ENCODE; https://www.encodeproject.org/ENCBS634DWU/


title: Control ChIP-seq from whole organism (ENCLB931YJF)

description:
https://www.encodeproject.org/experiments/ENCSR163UWO/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing NFYA-1-eGFP fusion proteins.
experiment encode accession: ENCSR163UWO
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB931YJF
fragmentation methods: sonication (generic microtip)

source_name: Caenorhabditis elegans strain OP404 (unc-119(tm4063) III; wgIs404) hermaphrodite late embryo insertion targeting C. elegans nfya-1

value: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to NFYA-1

value: hermaphrodite

value: late embryonic

value: Valerie Reinke, Yale

value: Valerie Reinke

value: ENCBS244PVW at ENCODE; https://www.encodeproject.org/ENCBS244PVW/


title: TF ChIP-seq from whole organism (ENCLB109LWA)

description:
https://www.encodeproject.org/experiments/ENCSR048MPV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-mep-1 in L1 larva worms.
experiment encode accession: ENCSR048MPV
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR114XOX
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB109LWA
size range: 150-350

value: whole organisms

value: pooled male and female

value: L1 larva

value: ENCBS847FYS at ENCODE; https://www.encodeproject.org/ENCBS847FYS/


title: TF ChIP-seq from whole organism (ENCLB266WHS)

description:
https://www.encodeproject.org/experiments/ENCSR410UOB/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Eip75B-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR410UOB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR135XHQ
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB266WHS
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: not applicable

value: D. mel line contraining an intronic eGFP exon to create a Eip75B-GFP fusion gene

value: prepupa

value: Kevin White, UChicago

value: Hugo Bellen

value: ENCBS465JCG at ENCODE; https://www.encodeproject.org/ENCBS465JCG/


title: Control ChIP-seq from whole organism (ENCLB656ZZL)

description:
https://www.encodeproject.org/experiments/ENCSR774SAN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR774SAN
assay title: Control ChIP-seq
assembly: dm6
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB656ZZL
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG33557-GFP mixed sex embryo (4-10 hours) insertion targeting D. melanogaster CG33557

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG33557

value: embryonic

value: Kevin White

value: ENCBS664UVG at ENCODE; https://www.encodeproject.org/ENCBS664UVG/


title: TF ChIP-seq from whole organism (ENCLB431OYO)

description:
https://www.encodeproject.org/experiments/ENCSR713PDJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing insv-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR713PDJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR114JYK
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB431OYO
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain insv-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster insv

value: insv

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to insv

value: 0-24 hour

value: ENCBS476NTL at ENCODE; https://www.encodeproject.org/ENCBS476NTL/


title: TF ChIP-seq from whole organism (ENCLB821IIQ)

description:
https://www.encodeproject.org/experiments/ENCSR045OVL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-jun-1 in L1 larva worms.
experiment encode accession: ENCSR045OVL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041UOO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB821IIQ
size range: 150-350

source_name: Caenorhabditis elegans strain OP234 (unc-119(ed3) III; wgIs234) mixed sex L1 larva insertion targeting C. elegans jun-1

value: whole organisms

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: CGC

value: ENCBS316RWY at ENCODE; https://www.encodeproject.org/ENCBS316RWY/


title: Control ChIP-seq from whole organism (ENCLB483NUO)

description:
https://www.encodeproject.org/experiments/ENCSR430JDM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in late embryonic worms.
experiment encode accession: ENCSR430JDM
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB483NUO
size range: 150-350

source_name: Caenorhabditis elegans strain OP37 (unc-119(ed3) III; wgIs37) mixed sex late embryo insertion targeting C. elegans pha-4

value: not applicable

value: late embryonic

value: ENCBS280EED at ENCODE; https://www.encodeproject.org/ENCBS280EED/


title: TF ChIP-seq from whole organism (ENCLB609SPW)

description:
https://www.encodeproject.org/experiments/ENCSR987WOG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-mdl-1 in L1 larva worms.
experiment encode accession: ENCSR987WOG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR920XFN
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB609SPW
size range: 150-350

source_name: Caenorhabditis elegans strain OP106 (unc-119(ed3) III; wgIs106) mixed sex L1 larva insertion targeting C. elegans mdl-1

value: whole organism

value: ENCBS494IPJ at ENCODE; https://www.encodeproject.org/ENCBS494IPJ/


title: Control ChIP-seq from whole organism (ENCLB179ASI)

description:
https://www.encodeproject.org/experiments/ENCSR165EZK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L1 larva worms.
experiment encode accession: ENCSR165EZK
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB179ASI
size range: 150-350

value: ENCBS242RAI at ENCODE; https://www.encodeproject.org/ENCBS242RAI/


title: TF ChIP-seq from whole organism (ENCLB833UGW)

description:
https://www.encodeproject.org/experiments/ENCSR045OVL/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against eGFP-jun-1 in L1 larva worms.
experiment encode accession: ENCSR045OVL
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR041UOO
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB833UGW
size range: 150-350

value: ENCBS459ADS at ENCODE; https://www.encodeproject.org/ENCBS459ADS/


title: TF ChIP-seq from whole organism (ENCLB495ITY)

description:
https://www.encodeproject.org/experiments/ENCSR776VNR/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR776VNR
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR136DEQ
encode release date: 2019-05-16
lab: Kevin White, UChicago
library encode accession: ENCLB495ITY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain gcm-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster gcm

value: gcm

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to gcm

value: embryonic

value: 0-16 hour

value: Kevin White, UChicago

value: Kevin White

value: ENCBS517QPZ at ENCODE; https://www.encodeproject.org/ENCBS517QPZ/


title: TF ChIP-seq from whole organism (ENCLB639SRZ)

description:
https://www.encodeproject.org/experiments/ENCSR045NJD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-tlp-1 in L1 larva worms.
experiment encode accession: ENCSR045NJD
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR917RGN
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB639SRZ
size range: 150-350

source_name: Caenorhabditis elegans strain OP321 (unc-119(tm4063) III; wgIs321) mixed sex L1 larva insertion targeting C. elegans tlp-1

value: whole organisms

value: pooled male and female

value: L1 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS805JKC at ENCODE; https://www.encodeproject.org/ENCBS805JKC/


title: TF ChIP-seq from whole organism (ENCLB134RYU)

description:
https://www.encodeproject.org/experiments/ENCSR987WOG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-mdl-1 in L1 larva worms.
experiment encode accession: ENCSR987WOG
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR920XFN
encode release date: 2017-11-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB134RYU
size range: 150-350

value: whole organism

value: not applicable

value: CGC

value: ENCBS230HBA at ENCODE; https://www.encodeproject.org/ENCBS230HBA/


title: Control ChIP-seq from whole organism (ENCLB419RHF)

description:
https://www.encodeproject.org/experiments/ENCSR708SDJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Vsx2-eGFP fusion proteins.
experiment encode accession: ENCSR708SDJ
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2022-12-19
lab: Kevin White, UChicago
library encode accession: ENCLB419RHF
fragmentation methods: sonication (Bioruptor generic)
size range: 200-275

source_name: Drosophila melanogaster strain Vsx2-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Vsx2

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Vsx2

value: wandering third instar larva

value: ENCBS137YTY at ENCODE; https://www.encodeproject.org/ENCBS137YTY/


title: TF ChIP-seq from whole organism (ENCLB229FFZ)

description:
https://www.encodeproject.org/experiments/ENCSR652KCU/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG6813-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR652KCU
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR431TEW
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB229FFZ
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG6813-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG6813

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG6813

value: embryonic

value: 0-24 hour

value: ENCBS280YSK at ENCODE; https://www.encodeproject.org/ENCBS280YSK/


title: TF ChIP-seq from whole organism (ENCLB197CWC)

description:
https://www.encodeproject.org/experiments/ENCSR896OQW/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8632-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR896OQW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR826RWT
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB197CWC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG8632-GFP mixed sex prepupa at white prepupa stage insertion targeting D. melanogaster ZnT49B

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8632

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS732KZV at ENCODE; https://www.encodeproject.org/ENCBS732KZV/


title: Control ChIP-seq from whole organism (ENCLB571LBI)

description:
https://www.encodeproject.org/experiments/ENCSR908EFA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control for ChIP-seq on transgenic flies expressing Jra-eGFP fusion proteins.
experiment encode accession: ENCSR908EFA
assay title: Control ChIP-seq
assembly: dm6, dm3
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB571LBI
fragmentation methods: sonication (Bioruptor generic)

source_name: Drosophila melanogaster strain Jra-GFP mixed sex wandering third instar larva insertion targeting D. melanogaster Jra

value: whole organism

value: not applicable

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to Jra

value: pooled male and female

value: unknown

value: ENCBS595JSC at ENCODE; https://www.encodeproject.org/ENCBS595JSC/


title: TF ChIP-seq from whole organism (ENCLB739KNM)

description:
https://www.encodeproject.org/experiments/ENCSR164BYW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-hpl-2 in L1 larva worms.
experiment encode accession: ENCSR164BYW
assay title: TF ChIP-seq
possible controls: ENCSR581MER
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB739KNM
size range: 150-350

value: L1 larva

value: Michael Snyder, Stanford

value: CGC

value: ENCBS767OFK at ENCODE; https://www.encodeproject.org/ENCBS767OFK/


title: TF ChIP-seq from whole organism (ENCLB051VVY)

description:
https://www.encodeproject.org/experiments/ENCSR903DUB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR903DUB
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR603RRK
encode release date: 2018-02-15
lab: Kevin White, UChicago
library encode accession: ENCLB051VVY
fragmentation methods: sonication (Bioruptor generic)
size range: 200-300

value: psq

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to psq

value: wandering third instar larva

value: ENCBS353CBQ at ENCODE; https://www.encodeproject.org/ENCBS353CBQ/


title: TF ChIP-seq from whole organism (ENCLB713TAX)

description:
https://www.encodeproject.org/experiments/ENCSR791QVO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-eor-1 in L3 larva worms.
experiment encode accession: ENCSR791QVO
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR531CCR
encode release date: 2018-02-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB713TAX
size range: 150-350

source_name: Caenorhabditis elegans strain OP81 (unc-119(ed3) III; wgIs81) mixed sex L3 larva insertion targeting C. elegans eor-1

value: L3 larva

value: ENCBS634DWU at ENCODE; https://www.encodeproject.org/ENCBS634DWU/


title: TF ChIP-seq from whole organism (ENCLB410VLC)

description:
https://www.encodeproject.org/experiments/ENCSR896OQW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8632-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR896OQW
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR826RWT
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB410VLC
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8632

value: prepupa

value: Kevin White, UChicago

value: Kevin White

value: white prepupa

value: ENCBS621MYQ at ENCODE; https://www.encodeproject.org/ENCBS621MYQ/


title: Control ChIP-seq from whole organism (ENCLB218QRY)

description:
https://www.encodeproject.org/experiments/ENCSR626WON/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR626WON
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB218QRY
size range: 150-350

source_name: Caenorhabditis elegans strain N2 (C. elegans wild isolate) mixed sex L4 larva whole organism

value: not applicable

value: pooled male and female

value: L4 larva

value: unknown

value: Michael Snyder, Stanford

value: ENCBS935OYG at ENCODE; https://www.encodeproject.org/ENCBS935OYG/


title: TF ChIP-seq from whole organism (ENCLB539CYD)

description:
https://www.encodeproject.org/experiments/ENCSR450VJF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG10543-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR450VJF
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR606GBZ
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB539CYD
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain CG10543-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG10543

value: whole organisms

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG10543

value: embryonic

value: 0-24 hour

value: ENCBS040JSO at ENCODE; https://www.encodeproject.org/ENCBS040JSO/


title: TF ChIP-seq from whole organism (ENCLB699IVW)

description:
https://www.encodeproject.org/experiments/ENCSR444JKK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ewg-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR444JKK
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR256ESG
encode release date: 2017-11-22
lab: Kevin White, UChicago
library encode accession: ENCLB699IVW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800

source_name: Drosophila melanogaster strain ewg-GFP mixed sex embryo (0-14 hours) insertion targeting D. melanogaster ewg

value: ewg

value: whole organism

value: Transgenic D. mel line, stably expressing a C-terminal GFP fused to ewg

value: 0-14 hour

value: ENCBS030HTT at ENCODE; https://www.encodeproject.org/ENCBS030HTT/