title: SS2_Exp2_WT_Infected_M6_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M6_B112477_B007853


title: SS2_Exp2_WT_Infected_M3_B112476_B007852

status: Public on Apr 20 2024

type: SRA

city: San Francisco

first: Leah

last: Dorman

state: CA

address: 499 Illinois St

department: Data Science

country: USA

institute: CZBiohub

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M3_B112476_B007852

library_source: transcriptomic single cell

data_processing:
De-multiplexed using bcl2fastq version 2.20 and aligned with Gencode v.M19 annotations using STAR version 2.5.2b with parameters TK
Assembly: mm10
Supplementary files format and content: h5ad: Processed complete data object from scanpy
Supplementary files format and content: csv: normalized counts and metadata table

molecule: polyA RNA

organism: Mus musculus

source_name: Lung

extract_protocol:
For in vivo, 28 days post infection mice were sacrificed and single cell lung suspension stained for flow cytometry (see manuscript protocol for details).
For SmartSeq2, cells were sorted directly into 384 well plates containing gently lysis buffer and processed according to Picelli 2014 protocol.
scRNASeq (Smartseq2)

treatment_protocol: For in vivo mouse: mice were aerosol infected with H37Rv (50CFU) or H37Rv-deltaEccD (500CFU) and left for 28 days prior to sacrifice

tag: tissue

value: Lung

tag: cell type

value: Cd11b+ and-or Cd11c+

tag: infection

value: Mycobacterium tuberculosis H37Rv_zsGreen aerosol infection


title: SS2_Exp2_WT_Infected_M15_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M15_B112477_B007853


title: SS2_Exp2_WT_Infected_M12_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M12_B112477_B007853


title: SS2_Exp2_WT_Infected_M17_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M17_B112476_B007852


title: SS2_Exp2_WT_Infected_I19_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: I19_B112476_B007852


title: SS2_Exp2_WT_Infected_I21_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: I21_B112477_B007853


title: SS2_Exp2_WT_Infected_M13_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M13_B112476_B007852


title: SS2_Exp2_WT_Infected_L7_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: L7_B112476_B007852


title: SS2_Exp2_WT_Infected_M18_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M18_B112477_B007853


title: SS2_Exp2_WT_Infected_M4_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M4_B112476_B007852


title: SS2_Exp2_WT_Infected_M13_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M13_B112477_B007853


title: SS2_Exp2_WT_Bystander_E19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E19_B112484_B0000720


title: SS2_Exp2_WT_Infected_M14_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M14_B112476_B007852


title: SS2_Exp2_WT_Infected_M9_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M9_B112477_B007853


title: SS2_Exp2_WT_Infected_M19_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M19_B112477_B007853


title: SS2_Exp2_WT_Infected_N15_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N15_B112476_B007852


title: SS2_Exp2_WT_Infected_N18_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N18_B112476_B007852


title: SS2_Exp2_WT_Infected_N12_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N12_B112476_B007852


title: SS2_Exp2_WT_Bystander_E6_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E6_B112484_B0000720


title: SS2_Exp2_WT_Infected_N18_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N18_B112477_B007853


title: SS2_Exp2_WT_Bystander_E8_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E8_B112484_B0000720


title: SS2_Exp2_WT_Bystander_A22_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A22_B112571_B0000715


title: SS2_Exp2_WT_Bystander_E20_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E20_B112484_B0000720


title: SS2_Exp2_WT_Bystander_A22_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A22_B112484_B0000720


title: SS2_Exp2_WT_Infected_M5_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M5_B112476_B007852


title: SS2_Exp2_WT_Bystander_F14_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F14_B112481_B0000719


title: SS2_Exp2_WT_Bystander_E4_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E4_B112484_B0000720


title: SS2_Exp2_WT_Infected_N14_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N14_B112477_B007853


title: SS2_Exp2_WT_Bystander_F14_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F14_B112484_B0000720


title: SS2_Exp2_WT_Infected_M5_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M5_B112477_B007853


title: SS2_Exp2_WT_Infected_M8_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M8_B112477_B007853


title: SS2_Exp2_WT_Infected_N16_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N16_B112476_B007852


title: SS2_Exp2_WT_Infected_N12_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N12_B112477_B007853


title: SS2_Exp2_WT_Infected_N21_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N21_B112477_B007853


title: SS2_Exp2_WT_Infected_M21_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M21_B112476_B007852


title: SS2_Exp2_WT_Infected_N11_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N11_B112476_B007852


title: SS2_Exp2_WT_Bystander_F15_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F15_B112484_B0000720


title: SS2_Exp2_WT_Infected_N19_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N19_B112477_B007853


title: SS2_Exp2_WT_Bystander_F13_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F13_B112571_B0000715


title: SS2_Exp2_WT_Infected_M2_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M2_B112476_B007852


title: SS2_Exp2_WT_Infected_M8_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M8_B112476_B007852


title: SS2_Exp2_WT_Bystander_F13_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F13_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H17_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H17_B112571_B0000715


title: SS2_Exp2_WT_Bystander_H4_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H4_B112481_B0000719


title: SS2_Exp2_WT_Bystander_F16_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F16_B112571_B0000715


title: SS2_Exp2_WT_Bystander_H3_B112492_B0000716

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H3_B112492_B0000716


title: SS2_Exp2_WT_Bystander_H21_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H21_B112571_B0000715


title: SS2_Exp2_WT_Bystander_F14_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F14_B112571_B0000715


title: SS2_Exp2_WT_Bystander_H2_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H2_B112484_B0000720


title: SS2_Exp2_WT_Bystander_F18_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F18_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H18_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H18_B112481_B0000719


title: SS2_Exp2_WT_Bystander_K3_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K3_B112484_B0000720


title: SS2_Exp2_WT_Infected_N14_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: N14_B112476_B007852


title: SS2_Exp2_WT_Bystander_K22_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K22_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H18_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H18_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K17_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K17_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H18_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H18_B112571_B0000715


title: SS2_Exp2_WT_Bystander_K20_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K20_B112571_B0000715


title: SS2_Exp2_WT_Bystander_B10_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: B10_B112481_B0000719


title: SS2_Exp2_WT_Bystander_H8_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H8_B112571_B0000715


title: SS2_Exp2_WT_Bystander_K21_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K21_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K2_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K2_B112484_B0000720


title: SS2_Exp2_WT_Bystander_B19_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: B19_B112571_B0000715


title: SS2_Exp2_WT_Bystander_F12_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F12_B112481_B0000719


title: SS2_Exp2_WT_Bystander_H19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H19_B112484_B0000720


title: SS2_Exp2_WT_Infected_M16_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: M16_B112477_B007853


title: SS2_Exp2_WT_Bystander_H15_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H15_B112571_B0000715


title: SS2_Exp2_WT_Bystander_K5_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K5_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K7_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K7_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K19_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K19_B112571_B0000715


title: SS2_Exp2_WT_Bystander_H16_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H16_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H17_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H17_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H22_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H22_B112571_B0000715


title: SS2_Exp2_WT_Bystander_K1_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K1_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K19_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K8_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K8_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H21_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H21_B112484_B0000720


title: SS2_Exp2_WT_Bystander_B10_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: B10_B112484_B0000720


title: SS2_Exp2_WT_Bystander_B3_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: B3_B112481_B0000719


title: SS2_Exp2_WT_Bystander_M1_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M1_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M18_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M18_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M19_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M4_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M4_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M5_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M5_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H19_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H19_B112571_B0000715


title: SS2_Exp2_WT_Bystander_A10_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A10_B112484_B0000720


title: SS2_Exp2_WT_Bystander_O7_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O7_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K6_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K6_B112571_B0000715


title: SS2_Exp2_WT_Bystander_B19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: B19_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M21_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M21_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M3_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M3_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M19_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M19_B112571_B0000715


title: SS2_Exp2_WT_Bystander_K22_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K22_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P11_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P11_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K20_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K20_B112484_B0000720


title: SS2_Exp2_WT_Bystander_O5_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O5_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M20_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M20_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M17_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M17_B112484_B0000720


title: SS2_Exp2_WT_Bystander_O9_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O9_B112484_B0000720


title: SS2_Exp2_WT_Bystander_P12_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P12_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K6_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K6_B112484_B0000720


title: SS2_Exp2_WT_Bystander_K18_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K18_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M6_B112492_B0000716

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M6_B112492_B0000716


title: SS2_Exp2_WT_Bystander_M6_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M6_B112571_B0000715


title: SS2_Exp2_WT_Bystander_A13_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A13_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M3_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M3_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M7_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M7_B112484_B0000720


title: SS2_Exp2_WT_Bystander_P13_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P13_B112484_B0000720


title: SS2_Exp2_WT_Bystander_P10_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P10_B112484_B0000720


title: SS2_Exp2_WT_Bystander_P10_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P10_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M18_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M18_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M20_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M20_B112484_B0000720


title: SS2_Exp2_WT_Bystander_P14_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P14_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P16_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P16_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P17_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P17_B112571_B0000715


title: SS2_Exp2_WT_Bystander_M21_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M21_B112484_B0000720


title: SS2_Exp2_WT_Bystander_M6_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M6_B112484_B0000720


title: SS2_Exp2_WT_Bystander_H1_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H1_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P11_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P11_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P16_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P16_B112484_B0000720


title: SS2_Exp2_WT_Infected_E7_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E7_B001939_B001941


title: SS2_Exp2_WT_Bystander_P19_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P19_B112484_B0000720


title: SS2_Exp2_WT_Bystander_O5_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O5_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P18_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P18_B112481_B0000719


title: SS2_Exp2_WT_Bystander_C17_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: C17_B112481_B0000719


title: SS2_Exp2_WT_Bystander_C20_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: C20_B112571_B0000715


title: SS2_Exp2_WT_Infected_F1_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F1_B001939_B001941


title: SS2_Exp2_WT_Bystander_K1_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K1_B112571_B0000715


title: SS2_Exp2_WT_Bystander_C20_B112492_B0000716

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: C20_B112492_B0000716


title: SS2_Exp2_WT_Bystander_O3_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O3_B112571_B0000715


title: SS2_Exp2_WT_Infected_G14_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G14_B001939_B001941


title: SS2_Exp2_WT_Bystander_M22_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M22_B112571_B0000715


title: SS2_Exp2_WT_Infected_F17_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F17_B001939_B001941


title: SS2_Exp2_WT_Infected_F22_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F22_B001939_B001941


title: SS2_Exp2_WT_Bystander_O4_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O4_B112481_B0000719


title: SS2_Exp2_WT_Bystander_H19_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H19_B112481_B0000719


title: SS2_Exp2_WT_Bystander_P18_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P18_B112571_B0000715


title: SS2_Exp2_WT_Bystander_P13_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P13_B112571_B0000715


title: SS2_Exp2_WT_Infected_F5_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F5_B001939_B001941


title: SS2_Exp2_WT_Infected_G5_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G5_B001939_B001941


title: SS2_Exp2_WT_Bystander_C16_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: C16_B112484_B0000720


title: SS2_Exp2_WT_Bystander_O7_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: O7_B112571_B0000715


title: SS2_Exp2_WT_Infected_A19_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A19_B112477_B007853


title: SS2_Exp2_WT_Bystander_P19_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: P19_B112571_B0000715


title: SS2_Exp2_WT_Infected_G19_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G19_B001939_B001941


title: SS2_Exp2_WT_Infected_G18_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G18_B001939_B001941


title: SS2_Exp2_WT_Infected_F20_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F20_B001939_B001941


title: SS2_Exp2_WT_Infected_G20_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G20_B001939_B001941


title: SS2_Exp2_WT_Infected_A1_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A1_B112477_B007853


title: SS2_Exp2_WT_Infected_A6_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A6_B112476_B007852


title: SS2_Exp2_WT_Infected_G12_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G12_B001939_B001941


title: SS2_Exp2_WT_Bystander_A19_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A19_B112481_B0000719


title: SS2_Exp2_WT_Infected_A22_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A22_B112476_B007852


title: SS2_Exp2_WT_Infected_F16_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F16_B001939_B001941


title: SS2_Exp2_WT_Infected_A5_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A5_B112476_B007852


title: SS2_Exp2_WT_Infected_A4_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A4_B112477_B007853


title: SS2_Exp2_WT_Infected_A3_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A3_B112476_B007852


title: SS2_Exp2_WT_Infected_G10_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G10_B001939_B001941


title: SS2_Exp2_WT_Infected_D6_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D6_B112477_B007853


title: SS2_Exp2_WT_Infected_D7_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D7_B112476_B007852


title: SS2_Exp2_WT_Infected_A3_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A3_B112477_B007853


title: SS2_Exp2_WT_Infected_A6_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A6_B112477_B007853


title: SS2_Exp2_WT_Bystander_F17_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F17_B112484_B0000720


title: SS2_Exp2_WT_Infected_A8_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A8_B112477_B007853


title: SS2_Exp2_WT_Bystander_D14_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D14_B112481_B0000719


title: SS2_Exp2_WT_Bystander_D19_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D19_B112481_B0000719


title: SS2_Exp2_WT_Infected_D8_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D8_B112476_B007852


title: SS2_Exp2_WT_Bystander_M16_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M16_B112571_B0000715


title: SS2_Exp2_WT_Infected_B11_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B11_B112476_B007852


title: SS2_Exp2_WT_Infected_D4_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D4_B112477_B007853


title: SS2_Exp2_WT_Infected_G13_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G13_B001939_B001941


title: SS2_Exp2_WT_Bystander_C21_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: C21_B112484_B0000720


title: SS2_Exp2_WT_Infected_A20_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A20_B112477_B007853


title: SS2_Exp2_WT_Infected_A9_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A9_B112476_B007852


title: SS2_Exp2_WT_Infected_E10_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E10_B112476_B007852


title: SS2_Exp2_WT_Infected_A21_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A21_B112476_B007852


title: SS2_Exp2_WT_Bystander_D13_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D13_B112484_B0000720


title: SS2_Exp2_WT_Infected_D6_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D6_B112476_B007852


title: SS2_Exp2_WT_Infected_B10_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B10_B112477_B007853


title: SS2_Exp2_WT_Infected_B13_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B13_B112477_B007853


title: SS2_Exp2_WT_Infected_D5_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D5_B112477_B007853


title: SS2_Exp2_WT_Infected_A8_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: A8_B112476_B007852


title: SS2_Exp2_WT_Infected_D7_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D7_B112477_B007853


title: SS2_Exp2_WT_Infected_D8_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D8_B112477_B007853


title: SS2_Exp2_WT_Infected_B11_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B11_B112477_B007853


title: RNA sequencing of Bacillus sp. CL-3 at 8% salt stress ( 1)

city: Noida

first: Rajnish

middle: Prakash

last: Singh

address: A 10, A Block, Block A, Industrial Area, Sector 62, Noida

country: India

institute: Jaypee Institute of Information Technology

library_source: transcriptomic

data_processing:
Sequenced reads were trimmed for adaptor sequence/low-quality sequence using trimgalore (Phred score threshold of 20)
Trimmed sequence reads were mapped to reference genome using Bowtie2 aligner.
Read count extraction was done using featureCounts and normalization and DEG identification was done using DESeq2.
Assembly: GCF_002220285.1
Supplementary files format and content: tab delimited text file includes normalized counts for each sample

molecule: total RNA

organism: Bacillus sp. (in: firmicutes)

source_name: bacterial cell

extract_protocol:
The bacterial cells were lysed using Qiagen bacterial lysis buffer, the lysate containing RNA was passed to silica membrane of Qiagen RNeasy spin column, and the total RNA was eluted using nuclease free water. The quality of the RNA was analysed through Agilent Bioanalyzer.
QIAseqFastSelect – 5S/16S/23S Kit for Bacterial Ribodepletion and QIAseq Stranded RNA Library Kit for Library preparation following manufacturer's protocols.

value: bacterial cell

tag: stress

value: with 8% salt stress


title: RNA sequencing of Bacillus sp. CL-3 at 8% salt stress ( 2)


title: RNA sequencing of Bacillus sp. CL-3 without salt stress ( 1)

value: without salt stress


title: RNA sequencing of Vibrio natriegens CL-2 at 8% salt stress ( 2)

data_processing:
Sequenced reads were trimmed for adaptor sequence/low-quality sequence using trimgalore (Phred score threshold of 20)
Trimmed sequence reads were mapped to reference genome using Bowtie2 aligner.
Read count extraction was done using featureCounts and normalization and DEG identification was done using DESeq2.
Assembly: GCF_001456255.1,  GCF_002220285.1
Supplementary files format and content: tab delimited text file include normalized counts for each sample

organism: Vibrio natriegens


title: RNA sequencing of Vibrio natriegens CL-2 at 8% salt stress ( 1)


title: SS2_Exp2_WT_Infected_B13_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B13_B112476_B007852


title: SS2_Exp2_WT_Infected_E13_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E13_B112476_B007852


title: SS2_Exp2_WT_Infected_D5_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D5_B112476_B007852


title: RNA sequencing of Vibrio natriegens CL-2 without salt stress ( 2)


title: SS2_Exp2_WT_Infected_G21_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G21_B001939_B001941


title: RNA sequencing of Vibrio natriegens CL-2 without salt stress ( 1)


title: SS2_Exp2_WT_Bystander_D1_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D1_B112484_B0000720


title: SS2_Exp1_Uninfected_G8_B000009_Uninfected_S536

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: G8_B000009_Uninfected_S536

value: Control


title: SS2_Exp2_WT_Infected_E11_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E11_B112477_B007853


title: SS2_Exp2_WT_Infected_G5_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G5_B112476_B007852


title: SS2_Exp1_Uninfected_I20_B000009_Uninfected_S596

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I20_B000009_Uninfected_S596


title: SS2_Exp1_Uninfected_K15_B000009_Uninfected_S639

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K15_B000009_Uninfected_S639


title: SS2_Exp1_Uninfected_G9_B000010_Uninfected_S921

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: G9_B000010_Uninfected_S921


title: SS2_Exp2_WT_Infected_E16_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E16_B112477_B007853


title: SS2_Exp2_WT_Infected_D9_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: D9_B112476_B007852


title: SS2_Exp2_WT_Infected_E17_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E17_B112476_B007852


title: SS2_Exp2_WT_Bystander_F11_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F11_B112484_B0000720


title: RNA sequencing of Bacillus sp. CL-3 without salt stress ( 2)


title: SS2_Exp1_Uninfected_K16_B000010_Uninfected_S1024

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K16_B000010_Uninfected_S1024


title: SS2_Exp1_Uninfected_I1_B000010_Uninfected_S961

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I1_B000010_Uninfected_S961


title: SS2_Exp1_Uninfected_K18_B000008_Uninfected_S258

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K18_B000008_Uninfected_S258


title: SS2_Exp1_Uninfected_K18_B000009_Uninfected_S642

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K18_B000009_Uninfected_S642


title: SS2_Exp1_Uninfected_B5_B000008_Uninfected_S29

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: B5_B000008_Uninfected_S29


title: SS2_Exp2_WT_Bystander_F11_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F11_B112571_B0000715


title: SS2_Exp1_Uninfected_K16_B000009_Uninfected_S640

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K16_B000009_Uninfected_S640


title: SS2_Exp1_Uninfected_I3_B000010_Uninfected_S963

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I3_B000010_Uninfected_S963


title: SS2_Exp2_WT_Bystander_D4_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D4_B112484_B0000720


title: SS2_Exp2_WT_Infected_E12_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E12_B112477_B007853


title: SS2_Exp1_Uninfected_K14_B000009_Uninfected_S638

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K14_B000009_Uninfected_S638


title: SS2_Exp2_WT_Infected_E12_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E12_B112476_B007852


title: SS2_Exp1_Uninfected_B8_B000010_Uninfected_S800

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: B8_B000010_Uninfected_S800


title: SS2_Exp2_WT_Infected_E15_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E15_B112477_B007853


title: SS2_Exp1_Uninfected_I21_B000009_Uninfected_S597

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I21_B000009_Uninfected_S597


title: SS2_Exp1_Uninfected_K19_B000009_Uninfected_S643

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K19_B000009_Uninfected_S643


title: SS2_Exp2_WT_Infected_G8_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G8_B112476_B007852


title: SS2_Exp2_WT_Infected_H17_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H17_B112476_B007852


title: SS2_Exp1_Uninfected_B9_B000009_Uninfected_S417

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: B9_B000009_Uninfected_S417


title: SS2_Exp1_Uninfected_B10_B000008_Uninfected_S34

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: B10_B000008_Uninfected_S34


title: SS2_Exp2_WT_Bystander_D6_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D6_B112484_B0000720


title: SS2_Exp2_WT_Infected_H15_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H15_B112476_B007852


title: SS2_Exp1_Uninfected_K18_B000010_Uninfected_S1026

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K18_B000010_Uninfected_S1026


title: SS2_Exp1_Uninfected_I1_B000009_Uninfected_S577

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I1_B000009_Uninfected_S577


title: SS2_Exp2_WT_Infected_G7_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G7_B112476_B007852


title: SS2_Exp1_Uninfected_L6_B000009_Uninfected_S654

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L6_B000009_Uninfected_S654


title: SS2_Exp2_WT_Bystander_A20_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A20_B112484_B0000720


title: SS2_Exp2_WT_Bystander_D8_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: D8_B112484_B0000720


title: SS2_Exp2_WT_Infected_E11_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E11_B112476_B007852


title: SS2_Exp1_Uninfected_L6_B000010_Uninfected_S1038

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L6_B000010_Uninfected_S1038


title: SS2_Exp1_Uninfected_I4_B000009_Uninfected_S580

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I4_B000009_Uninfected_S580


title: SS2_Exp2_WT_Infected_G8_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G8_B112477_B007853


title: SS2_Exp1_Uninfected_I22_B000009_Uninfected_S598

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I22_B000009_Uninfected_S598


title: SS2_Exp1_Uninfected_I6_B000009_Uninfected_S582

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I6_B000009_Uninfected_S582


title: SS2_Exp2_WT_Infected_H14_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H14_B112477_B007853


title: SS2_Exp1_Uninfected_I20_B000010_Uninfected_S980

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I20_B000010_Uninfected_S980


title: SS2_Exp1_Uninfected_L7_B000010_Uninfected_S1039

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L7_B000010_Uninfected_S1039


title: SS2_Exp2_WT_Infected_H10_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H10_B112476_B007852


title: SS2_Exp1_Uninfected_I3_B000009_Uninfected_S579

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I3_B000009_Uninfected_S579


title: SS2_Exp2_WT_Infected_G6_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G6_B112476_B007852


title: SS2_Exp2_WT_Infected_E10_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E10_B112477_B007853


title: SS2_Exp1_Uninfected_K1_B000008_Uninfected_S241

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K1_B000008_Uninfected_S241


title: SS2_Exp2_WT_Infected_J6_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J6_B112477_B007853


title: SS2_Exp2_WT_Infected_H19_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H19_B112476_B007852


title: SS2_Exp2_WT_Infected_J3_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J3_B112477_B007853


title: SS2_Exp2_WT_Infected_J9_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J9_B112476_B007852


title: SS2_Exp1_Uninfected_I1_B000008_Uninfected_S193

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I1_B000008_Uninfected_S193


title: SS2_Exp1_Uninfected_M10_B000010_Uninfected_S1066

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M10_B000010_Uninfected_S1066


title: SS2_Exp1_Uninfected_M10_B000009_Uninfected_S682

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M10_B000009_Uninfected_S682


title: SS2_Exp1_Uninfected_M11_B000009_Uninfected_S683

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M11_B000009_Uninfected_S683


title: SS2_Exp2_WT_Infected_H12_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H12_B112476_B007852


title: SS2_Exp2_WT_Infected_H14_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H14_B112476_B007852


title: SS2_Exp2_WT_Infected_K13_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K13_B112476_B007852


title: SS2_Exp1_Uninfected_I19_B000009_Uninfected_S595

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I19_B000009_Uninfected_S595


title: SS2_Exp2_WT_Infected_E14_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: E14_B112477_B007853


title: SS2_Exp2_WT_Bystander_K7_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K7_B112571_B0000715


title: SS2_Exp1_Uninfected_L7_B000008_Uninfected_S271

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L7_B000008_Uninfected_S271


title: SS2_Exp2_WT_Infected_H16_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H16_B112477_B007853


title: SS2_Exp1_Uninfected_I2_B000010_Uninfected_S962

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I2_B000010_Uninfected_S962


title: SS2_Exp2_WT_Infected_J4_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J4_B112476_B007852


title: SS2_Exp1_Uninfected_M13_B000009_Uninfected_S685

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M13_B000009_Uninfected_S685


title: SS2_Exp2_WT_Infected_H20_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H20_B112477_B007853


title: SS2_Exp2_WT_Infected_J8_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J8_B112477_B007853


title: SS2_Exp2_WT_Infected_G9_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: G9_B112477_B007853


title: SS2_Exp1_Uninfected_C12_B000009_Uninfected_S444

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: C12_B000009_Uninfected_S444


title: SS2_Exp1_Uninfected_K15_B000010_Uninfected_S1023

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K15_B000010_Uninfected_S1023


title: SS2_Exp2_WT_Infected_K10_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K10_B112476_B007852


title: SS2_Exp2_WT_Infected_H16_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H16_B112476_B007852


title: SS2_Exp1_Uninfected_C11_B000010_Uninfected_S827

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: C11_B000010_Uninfected_S827


title: SS2_Exp2_WT_Infected_K19_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K19_B112476_B007852


title: SS2_Exp1_Uninfected_M13_B000008_Uninfected_S301

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M13_B000008_Uninfected_S301


title: SS2_Exp1_Uninfected_K15_B000008_Uninfected_S255

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K15_B000008_Uninfected_S255


title: SS2_Exp1_Uninfected_O11_B000008_Uninfected_S347

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O11_B000008_Uninfected_S347


title: SS2_Exp2_WT_Infected_K18_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K18_B112477_B007853


title: SS2_Exp1_Uninfected_O15_B000008_Uninfected_S351

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O15_B000008_Uninfected_S351


title: SS2_Exp2_WT_Infected_K21_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K21_B112477_B007853


title: SS2_Exp1_Uninfected_L6_B000008_Uninfected_S270

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L6_B000008_Uninfected_S270


title: SS2_Exp2_WT_Bystander_E15_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: E15_B112484_B0000720


title: SS2_Exp2_WT_Bystander_F12_B112492_B0000716

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F12_B112492_B0000716


title: SS2_Exp2_WT_Infected_H11_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H11_B112477_B007853


title: SS2_Exp2_WT_Bystander_F18_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F18_B112571_B0000715


title: SS2_Exp1_Uninfected_B4_B000010_Uninfected_S796

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: B4_B000010_Uninfected_S796


title: SS2_Exp2_WT_Bystander_A23_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A23_B112571_B0000715


title: SS2_Exp2_WT_Infected_K5_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K5_B112476_B007852


title: SS2_Exp1_Uninfected_N5_B000008_Uninfected_S317

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: N5_B000008_Uninfected_S317


title: SS2_Exp1_Uninfected_G8_B000010_Uninfected_S920

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: G8_B000010_Uninfected_S920


title: SS2_Exp1_Uninfected_O11_B000009_Uninfected_S731

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O11_B000009_Uninfected_S731


title: SS2_Exp2_WT_Infected_K22_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K22_B112476_B007852


title: SS2_Exp1_Uninfected_M12_B000009_Uninfected_S684

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M12_B000009_Uninfected_S684


title: SS2_Exp2_WT_Bystander_K3_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: K3_B112571_B0000715


title: SS2_Exp2_WT_Infected_H17_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H17_B112477_B007853


title: SS2_Exp1_Uninfected_N4_B000008_Uninfected_S316

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: N4_B000008_Uninfected_S316


title: SS2_Exp1_Uninfected_M11_B000008_Uninfected_S299

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M11_B000008_Uninfected_S299


title: SS2_Exp2_WT_Bystander_F23_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F23_B112484_B0000720


title: SS2_Exp2_WT_Infected_H13_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: H13_B112476_B007852


title: SS2_Exp1_Uninfected_L8_B000010_Uninfected_S1040

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L8_B000010_Uninfected_S1040


title: SS2_Exp2_WT_Infected_K4_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K4_B112476_B007852


title: SS2_Exp2_WT_Infected_K18_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K18_B112476_B007852


title: SS2_Exp2_WT_Infected_K2_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K2_B112477_B007853


title: SS2_Exp1_Uninfected_M12_B000008_Uninfected_S300

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M12_B000008_Uninfected_S300


title: SS2_Exp2_WT_Bystander_F22_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F22_B112484_B0000720


title: SS2_Exp1_Uninfected_M12_B000010_Uninfected_S1068

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M12_B000010_Uninfected_S1068


title: SS2_Exp1_Uninfected_N22_B000010_Uninfected_S1102

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: N22_B000010_Uninfected_S1102


title: SS2_Exp2_WT_Bystander_F22_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F22_B112571_B0000715


title: SS2_Exp1_Uninfected_M13_B000010_Uninfected_S1069

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M13_B000010_Uninfected_S1069


title: SS2_Exp2_WT_Bystander_F3_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F3_B112484_B0000720


title: SS2_Exp2_WT_Bystander_F1_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F1_B112571_B0000715


title: SS2_Exp1_Uninfected_O13_B000009_Uninfected_S733

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O13_B000009_Uninfected_S733


title: SS2_Exp1_Uninfected_M10_B000008_Uninfected_S298

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: M10_B000008_Uninfected_S298


title: SS2_Exp2_WT_Bystander_H16_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: H16_B112571_B0000715


title: SS2_Exp2_WT_Bystander_A2_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: A2_B112484_B0000720


title: SS2_Exp1_Uninfected_K20_B000010_Uninfected_S1028

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K20_B000010_Uninfected_S1028


title: SS2_Exp1_Uninfected_I19_B000010_Uninfected_S979

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I19_B000010_Uninfected_S979


title: SS2_Exp2_WT_Infected_F12_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F12_B001939_B001941


title: SS2_Exp2_WT_Infected_K6_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K6_B112476_B007852


title: SS2_Exp1_Uninfected_N3_B000008_Uninfected_S315

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: N3_B000008_Uninfected_S315


title: SS2_Exp1_Uninfected_O14_B000010_Uninfected_S1118

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O14_B000010_Uninfected_S1118


title: SS2_Exp1_Uninfected_K17_B000009_Uninfected_S641

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K17_B000009_Uninfected_S641


title: SS2_Exp1_Uninfected_L9_B000008_Uninfected_S273

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L9_B000008_Uninfected_S273


title: SS2_Exp1_Uninfected_O12_B000009_Uninfected_S732

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O12_B000009_Uninfected_S732


title: SS2_Exp2_WT_Infected_K7_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K7_B112477_B007853


title: SS2_Exp2_WT_Infected_K16_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K16_B112476_B007852


title: SS2_Exp1_Uninfected_O15_B000010_Uninfected_S1119

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O15_B000010_Uninfected_S1119


title: SS2_Exp1_Uninfected_K14_B000008_Uninfected_S254

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K14_B000008_Uninfected_S254


title: SS2_Exp1_Uninfected_G6_B000010_Uninfected_S918

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: G6_B000010_Uninfected_S918


title: SS2_Exp1_Uninfected_L9_B000010_Uninfected_S1041

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: L9_B000010_Uninfected_S1041


title: SS2_Exp1_Uninfected_O15_B000009_Uninfected_S735

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: O15_B000009_Uninfected_S735


title: SS2_Exp1_Uninfected_I6_B000008_Uninfected_S198

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I6_B000008_Uninfected_S198


title: SS2_Exp2_WT_Bystander_F4_B112484_B0000720

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F4_B112484_B0000720


title: SS2_Exp2_WT_Infected_J7_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: J7_B112476_B007852


title: SS2_Exp1_Uninfected_I4_B000008_Uninfected_S196

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: I4_B000008_Uninfected_S196


title: SS2_Exp2_WT_Bystander_F13_B112492_B0000716

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F13_B112492_B0000716


title: SS2_Exp2_WT_Infected_F10_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F10_B001939_B001941


title: SS2_Exp2_WT_Bystander_M17_B112481_B0000719

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: M17_B112481_B0000719


title: SS2_Exp2_WT_Bystander_F20_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F20_B112571_B0000715


title: SS2_Exp2_WT_Infected_B10_B112476_B007852

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: B10_B112476_B007852


title: SS2_Exp2_WT_Bystander_F21_B112571_B0000715

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen negative bystanders Cell ID: F21_B112571_B0000715


title: SS2_Exp2_WT_Infected_F6_B001939_B001941

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: F6_B001939_B001941


title: SS2_Exp2_WT_Infected_K4_B112477_B007853

description:
Illumina NovaSeq 6000
Smartseq2 scRNAseq of  mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells
Smartseq2 scRNAseq of mouse lung myeloid cells: MTB-H37rv-zsGreen positive infected cells Cell ID: K4_B112477_B007853


title: SS2_Exp1_Uninfected_K14_B000010_Uninfected_S1022

description:
Illumina NextSeq 2000
Smartseq2 scRNAseq of  mouse lung myeloid cells: Control
Smartseq2 scRNAseq of mouse lung myeloid cells: Control Cell ID: K14_B000010_Uninfected_S1022