title: kidney cell 3567, Lean, 11 weeks

description:
kidney cell 3567
1051s_F11


title: kidney cell 3566, Lean, 11 weeks

status: Public on May 01 2024

type: SRA

city: Uppsala

first: L.

last: He

address: Dag Hammarskjölds Väg 20

country: Sweden

institute: Uppsala University

description:
kidney cell 3566
1051s_F1

library_source: transcriptomic

data_processing:
The sequencing reads were first aligned to the mouse reference genome GRCm38 (mm10) with tophat (version 2.1.1). The duplicated reads were removed using samtools software (version 0.1.18). The raw read counts for each gene were then calculated using featureCounts function from the Subread package (version 1.4.6-p5)
Genome_build: GRCm38
Supplementary_files_format_and_content: tab-delimited text file includes raw counts values for each sample

molecule: total RNA

organism: Mus musculus

source_name: Kidney

extract_protocol:
For labelling of EC and live cells, the kidney cell suspension was incubated with APC-conjugated anti-CD31 antibody (1:100, 551262, BD Biosciences) and Calcein AM (2 µM, C3099, Thermo Fisher Scientific) for 20 min at RT, then centrifugated as above, supernatant removed, and the cell pellet resuspended in FACS buffer and placed on ice. The SmartSeq2 methodology was used for the generation and sequencing of full length polyadenylated cDNAs
Libraries for RNA-seq were prepared by using SMART-seq2 methodology

tag: strain

tag: tissue

value: kidney

tag: genotype

value: Lean

tag: disease state

value: control

tag: age

value: 11 weeks


title: kidney cell 3565, Lean, 11 weeks

description:
kidney cell 3565
1051s_E9


title: kidney cell 3559, Lean, 11 weeks

description:
kidney cell 3559
1051s_E3


title: kidney cell 3560, Lean, 11 weeks

description:
kidney cell 3560
1051s_E4


title: kidney cell 3564, Lean, 11 weeks

description:
kidney cell 3564
1051s_E8


title: kidney cell 3555, Lean, 11 weeks

description:
kidney cell 3555
1051s_E20


title: kidney cell 3563, Lean, 11 weeks

description:
kidney cell 3563
1051s_E7


title: kidney cell 3561, Lean, 11 weeks

description:
kidney cell 3561
1051s_E5


title: kidney cell 3553, Lean, 11 weeks

description:
kidney cell 3553
1051s_E19


title: kidney cell 3585, Lean, 11 weeks

description:
kidney cell 3585
1051s_G10


title: kidney cell 3554, Lean, 11 weeks

description:
kidney cell 3554
1051s_E2


title: kidney cell 3556, Lean, 11 weeks

description:
kidney cell 3556
1051s_E21


title: kidney cell 3550, Lean, 11 weeks

description:
kidney cell 3550
1051s_E16


title: kidney cell 3562, Lean, 11 weeks

description:
kidney cell 3562
1051s_E6


title: kidney cell 3551, Lean, 11 weeks

description:
kidney cell 3551
1051s_E17


title: kidney cell 3552, Lean, 11 weeks

description:
kidney cell 3552
1051s_E18


title: kidney cell 3549, Lean, 11 weeks

description:
kidney cell 3549
1051s_E15


title: kidney cell 3546, Lean, 11 weeks

description:
kidney cell 3546
1051s_E11


title: kidney cell 3545, Lean, 11 weeks

description:
kidney cell 3545
1051s_E10


title: kidney cell 3543, Lean, 11 weeks

description:
kidney cell 3543
1051s_D9


title: kidney cell 3544, Lean, 11 weeks

description:
kidney cell 3544
1051s_E1


title: kidney cell 3542, Lean, 11 weeks

description:
kidney cell 3542
1051s_D8


title: kidney cell 3540, Lean, 11 weeks

description:
kidney cell 3540
1051s_D6


title: kidney cell 3568, Lean, 11 weeks

description:
kidney cell 3568
1051s_F13


title: kidney cell 3539, Lean, 11 weeks

description:
kidney cell 3539
1051s_D5


title: kidney cell 3538, Lean, 11 weeks

description:
kidney cell 3538
1051s_D4


title: kidney cell 3558, Lean, 11 weeks

description:
kidney cell 3558
1051s_E24


title: kidney cell 3557, Lean, 11 weeks

description:
kidney cell 3557
1051s_E23


title: kidney cell 3535, Lean, 11 weeks

description:
kidney cell 3535
1051s_D21


title: kidney cell 3532, Lean, 11 weeks

description:
kidney cell 3532
1051s_D19


title: kidney cell 3534, Lean, 11 weeks

description:
kidney cell 3534
1051s_D20


title: kidney cell 3547, Lean, 11 weeks

description:
kidney cell 3547
1051s_E12


title: kidney cell 3529, Lean, 11 weeks

description:
kidney cell 3529
1051s_D15


title: kidney cell 3531, Lean, 11 weeks

description:
kidney cell 3531
1051s_D17


title: kidney cell 3548, Lean, 11 weeks

description:
kidney cell 3548
1051s_E13


title: kidney cell 3536, Lean, 11 weeks

description:
kidney cell 3536
1051s_D22


title: kidney cell 3528, Lean, 11 weeks

description:
kidney cell 3528
1051s_D14


title: kidney cell 3526, Lean, 11 weeks

description:
kidney cell 3526
1051s_D12


title: kidney cell 3530, Lean, 11 weeks

description:
kidney cell 3530
1051s_D16


title: kidney cell 3522, Lean, 11 weeks

description:
kidney cell 3522
1051s_C9


title: kidney cell 3527, Lean, 11 weeks

description:
kidney cell 3527
1051s_D13


title: kidney cell 3533, Lean, 11 weeks

description:
kidney cell 3533
1051s_D2


title: kidney cell 3523, Lean, 11 weeks

description:
kidney cell 3523
1051s_D1


title: kidney cell 3524, Lean, 11 weeks

description:
kidney cell 3524
1051s_D10


title: kidney cell 3521, Lean, 11 weeks

description:
kidney cell 3521
1051s_C7


title: kidney cell 3520, Lean, 11 weeks

description:
kidney cell 3520
1051s_C6


title: kidney cell 3525, Lean, 11 weeks

description:
kidney cell 3525
1051s_D11


title: kidney cell 3541, Lean, 11 weeks

description:
kidney cell 3541
1051s_D7


title: kidney cell 3518, Lean, 11 weeks

description:
kidney cell 3518
1051s_C4


title: kidney cell 3517, Lean, 11 weeks

description:
kidney cell 3517
1051s_C22


title: kidney cell 3514, Lean, 11 weeks

description:
kidney cell 3514
1051s_C2


title: kidney cell 3515, Lean, 11 weeks

description:
kidney cell 3515
1051s_C20


title: kidney cell 3516, Lean, 11 weeks

description:
kidney cell 3516
1051s_C21


title: kidney cell 3513, Lean, 11 weeks

description:
kidney cell 3513
1051s_C19


title: kidney cell 3537, Lean, 11 weeks

description:
kidney cell 3537
1051s_D23


title: kidney cell 3511, Lean, 11 weeks

description:
kidney cell 3511
1051s_C16


title: kidney cell 3512, Lean, 11 weeks

description:
kidney cell 3512
1051s_C17


title: kidney cell 3510, Lean, 11 weeks

description:
kidney cell 3510
1051s_C14


title: kidney cell 3508, Lean, 11 weeks

description:
kidney cell 3508
1051s_C12


title: kidney cell 3509, Lean, 11 weeks

description:
kidney cell 3509
1051s_C13


title: kidney cell 3505, Lean, 11 weeks

description:
kidney cell 3505
1051s_C1


title: kidney cell 3507, Lean, 11 weeks

description:
kidney cell 3507
1051s_C11


title: kidney cell 3501, Lean, 11 weeks

description:
kidney cell 3501
1051s_B5


title: kidney cell 3506, Lean, 11 weeks

description:
kidney cell 3506
1051s_C10


title: kidney cell 3504, Lean, 11 weeks

description:
kidney cell 3504
1051s_B9


title: kidney cell 3499, Lean, 11 weeks

description:
kidney cell 3499
1051s_B3


title: kidney cell 3519, Lean, 11 weeks

description:
kidney cell 3519
1051s_C5


title: kidney cell 3502, Lean, 11 weeks

description:
kidney cell 3502
1051s_B6


title: kidney cell 3497, Lean, 11 weeks

description:
kidney cell 3497
1051s_B23


title: kidney cell 3500, Lean, 11 weeks

description:
kidney cell 3500
1051s_B4


title: kidney cell 3490, Lean, 11 weeks

description:
kidney cell 3490
1051s_B12


title: kidney cell 3496, Lean, 11 weeks

description:
kidney cell 3496
1051s_B2


title: kidney cell 3494, Lean, 11 weeks

description:
kidney cell 3494
1051s_B16


title: kidney cell 3491, Lean, 11 weeks

description:
kidney cell 3491
1051s_B13


title: kidney cell 3489, Lean, 11 weeks

description:
kidney cell 3489
1051s_B11


title: kidney cell 3492, Lean, 11 weeks

description:
kidney cell 3492
1051s_B14


title: kidney cell 3487, Lean, 11 weeks

description:
kidney cell 3487
1051s_A2


title: kidney cell 3486, Lean, 11 weeks

description:
kidney cell 3486
1051s_A19


title: kidney cell 3483, Lean, 11 weeks

description:
kidney cell 3483
1050s_P6


title: kidney cell 3485, Lean, 11 weeks

description:
kidney cell 3485
1051s_A1


title: kidney cell 3488, Lean, 11 weeks

description:
kidney cell 3488
1051s_B1


title: kidney cell 3484, Lean, 11 weeks

description:
kidney cell 3484
1050s_P9


title: kidney cell 3482, Lean, 11 weeks

description:
kidney cell 3482
1050s_P5


title: kidney cell 3503, Lean, 11 weeks

description:
kidney cell 3503
1051s_B7


title: kidney cell 3479, Lean, 11 weeks

description:
kidney cell 3479
1050s_P12


title: kidney cell 3480, Lean, 11 weeks

description:
kidney cell 3480
1050s_P14


title: kidney cell 3493, Lean, 11 weeks

description:
kidney cell 3493
1051s_B15


title: kidney cell 3495, Lean, 11 weeks

description:
kidney cell 3495
1051s_B19


title: kidney cell 3498, Lean, 11 weeks

description:
kidney cell 3498
1051s_B24


title: kidney cell 3481, Lean, 11 weeks

description:
kidney cell 3481
1050s_P19


title: kidney cell 3471, Lean, 11 weeks

description:
kidney cell 3471
1050s_O21


title: kidney cell 3470, Lean, 11 weeks

description:
kidney cell 3470
1050s_O20


title: kidney cell 3473, Lean, 11 weeks

description:
kidney cell 3473
1050s_O24


title: kidney cell 3469, Lean, 11 weeks

description:
kidney cell 3469
1050s_O2


title: kidney cell 3474, Lean, 11 weeks

description:
kidney cell 3474
1050s_O6


title: kidney cell 3477, Lean, 11 weeks

description:
kidney cell 3477
1050s_P10


title: kidney cell 3476, Lean, 11 weeks

description:
kidney cell 3476
1050s_P1


title: kidney cell 3475, Lean, 11 weeks

description:
kidney cell 3475
1050s_O7


title: kidney cell 3478, Lean, 11 weeks

description:
kidney cell 3478
1050s_P11


title: kidney cell 3465, Lean, 11 weeks

description:
kidney cell 3465
1050s_O11


title: kidney cell 3472, Lean, 11 weeks

description:
kidney cell 3472
1050s_O23


title: kidney cell 3468, Lean, 11 weeks

description:
kidney cell 3468
1050s_O15


title: kidney cell 3463, Lean, 11 weeks

description:
kidney cell 3463
1050s_O1


title: kidney cell 3464, Lean, 11 weeks

description:
kidney cell 3464
1050s_O10


title: kidney cell 3466, Lean, 11 weeks

description:
kidney cell 3466
1050s_O12


title: kidney cell 3462, Lean, 11 weeks

description:
kidney cell 3462
1050s_N9


title: kidney cell 3461, Lean, 11 weeks

description:
kidney cell 3461
1050s_N8


title: kidney cell 3458, Lean, 11 weeks

description:
kidney cell 3458
1050s_N3


title: kidney cell 3459, Lean, 11 weeks

description:
kidney cell 3459
1050s_N6


title: kidney cell 3457, Lean, 11 weeks

description:
kidney cell 3457
1050s_N23


title: kidney cell 3460, Lean, 11 weeks

description:
kidney cell 3460
1050s_N7


title: kidney cell 3456, Lean, 11 weeks

description:
kidney cell 3456
1050s_N21


title: kidney cell 3455, Lean, 11 weeks

description:
kidney cell 3455
1050s_N20


title: kidney cell 3453, Lean, 11 weeks

description:
kidney cell 3453
1050s_N19


title: kidney cell 3451, Lean, 11 weeks

description:
kidney cell 3451
1050s_N17


title: kidney cell 3467, Lean, 11 weeks

description:
kidney cell 3467
1050s_O13


title: kidney cell 3452, Lean, 11 weeks

description:
kidney cell 3452
1050s_N18


title: kidney cell 3448, Lean, 11 weeks

description:
kidney cell 3448
1050s_N11


title: kidney cell 3449, Lean, 11 weeks

description:
kidney cell 3449
1050s_N13


title: kidney cell 3444, Lean, 11 weeks

description:
kidney cell 3444
1050s_M8


title: kidney cell 3447, Lean, 11 weeks

description:
kidney cell 3447
1050s_N10


title: kidney cell 3440, Lean, 11 weeks

description:
kidney cell 3440
1050s_M4


title: kidney cell 3450, Lean, 11 weeks

description:
kidney cell 3450
1050s_N15


title: kidney cell 3445, Lean, 11 weeks

description:
kidney cell 3445
1050s_M9


title: kidney cell 3443, Lean, 11 weeks

description:
kidney cell 3443
1050s_M7


title: kidney cell 3442, Lean, 11 weeks

description:
kidney cell 3442
1050s_M6


title: kidney cell 3439, Lean, 11 weeks

description:
kidney cell 3439
1050s_M3


title: kidney cell 3441, Lean, 11 weeks

description:
kidney cell 3441
1050s_M5


title: kidney cell 3437, Lean, 11 weeks

description:
kidney cell 3437
1050s_M23


title: kidney cell 3446, Lean, 11 weeks

description:
kidney cell 3446
1050s_N1


title: kidney cell 3436, Lean, 11 weeks

description:
kidney cell 3436
1050s_M21


title: kidney cell 3438, Lean, 11 weeks

description:
kidney cell 3438
1050s_M24


title: kidney cell 3433, Lean, 11 weeks

description:
kidney cell 3433
1050s_M19


title: kidney cell 3432, Lean, 11 weeks

description:
kidney cell 3432
1050s_M18


title: kidney cell 3428, Lean, 11 weeks

description:
kidney cell 3428
1050s_M11


title: kidney cell 3430, Lean, 11 weeks

description:
kidney cell 3430
1050s_M13


title: kidney cell 3431, Lean, 11 weeks

description:
kidney cell 3431
1050s_M17


title: kidney cell 3429, Lean, 11 weeks

description:
kidney cell 3429
1050s_M12


title: kidney cell 3427, Lean, 11 weeks

description:
kidney cell 3427
1050s_M10


title: kidney cell 3454, Lean, 11 weeks

description:
kidney cell 3454
1050s_N2


title: kidney cell 3426, Lean, 11 weeks

description:
kidney cell 3426
1050s_M1


title: kidney cell 3423, Lean, 11 weeks

description:
kidney cell 3423
1050s_L7


title: kidney cell 3425, Lean, 11 weeks

description:
kidney cell 3425
1050s_L9


title: kidney cell 3424, Lean, 11 weeks

description:
kidney cell 3424
1050s_L8


title: kidney cell 3420, Lean, 11 weeks

description:
kidney cell 3420
1050s_L3


title: kidney cell 3419, Lean, 11 weeks

description:
kidney cell 3419
1050s_L24


title: kidney cell 3434, Lean, 11 weeks

description:
kidney cell 3434
1050s_M2


title: kidney cell 3418, Lean, 11 weeks

description:
kidney cell 3418
1050s_L20


title: kidney cell 3421, Lean, 11 weeks

description:
kidney cell 3421
1050s_L4


title: kidney cell 3422, Lean, 11 weeks

description:
kidney cell 3422
1050s_L6


title: kidney cell 3417, Lean, 11 weeks

description:
kidney cell 3417
1050s_L2


title: kidney cell 3410, Lean, 11 weeks

description:
kidney cell 3410
1050s_L10


title: kidney cell 3411, Lean, 11 weeks

description:
kidney cell 3411
1050s_L11


title: kidney cell 3406, Lean, 11 weeks

description:
kidney cell 3406
1050s_K6


title: kidney cell 3414, Lean, 11 weeks

description:
kidney cell 3414
1050s_L16


title: kidney cell 3416, Lean, 11 weeks

description:
kidney cell 3416
1050s_L19


title: kidney cell 3407, Lean, 11 weeks

description:
kidney cell 3407
1050s_K7


title: kidney cell 3412, Lean, 11 weeks

description:
kidney cell 3412
1050s_L12


title: kidney cell 3415, Lean, 11 weeks

description:
kidney cell 3415
1050s_L18


title: kidney cell 3409, Lean, 11 weeks

description:
kidney cell 3409
1050s_L1


title: kidney cell 3403, Lean, 11 weeks

description:
kidney cell 3403
1050s_K24


title: kidney cell 3404, Lean, 11 weeks

description:
kidney cell 3404
1050s_K3


title: kidney cell 3401, Lean, 11 weeks

description:
kidney cell 3401
1050s_K22


title: kidney cell 3435, Lean, 11 weeks

description:
kidney cell 3435
1050s_M20


title: kidney cell 3402, Lean, 11 weeks

description:
kidney cell 3402
1050s_K23


title: kidney cell 3400, Lean, 11 weeks

description:
kidney cell 3400
1050s_K21


title: kidney cell 3405, Lean, 11 weeks

description:
kidney cell 3405
1050s_K5


title: kidney cell 3399, Lean, 11 weeks

description:
kidney cell 3399
1050s_K20


title: kidney cell 3397, Lean, 11 weeks

description:
kidney cell 3397
1050s_K19


title: kidney cell 3396, Lean, 11 weeks

description:
kidney cell 3396
1050s_K18


title: kidney cell 3398, Lean, 11 weeks

description:
kidney cell 3398
1050s_K2


title: kidney cell 3395, Lean, 11 weeks

description:
kidney cell 3395
1050s_K17


title: kidney cell 3408, Lean, 11 weeks

description:
kidney cell 3408
1050s_K8


title: kidney cell 3393, Lean, 11 weeks

description:
kidney cell 3393
1050s_K12


title: kidney cell 3394, Lean, 11 weeks

description:
kidney cell 3394
1050s_K15


title: kidney cell 3390, Lean, 11 weeks

description:
kidney cell 3390
1050s_J8


title: kidney cell 3386, Lean, 11 weeks

description:
kidney cell 3386
1050s_J3


title: kidney cell 3389, Lean, 11 weeks

description:
kidney cell 3389
1050s_J7


title: kidney cell 3392, Lean, 11 weeks

description:
kidney cell 3392
1050s_K11


title: kidney cell 3385, Lean, 11 weeks

description:
kidney cell 3385
1050s_J24


title: kidney cell 3384, Lean, 11 weeks

description:
kidney cell 3384
1050s_J22


title: kidney cell 3388, Lean, 11 weeks

description:
kidney cell 3388
1050s_J6


title: kidney cell 3380, Lean, 11 weeks

description:
kidney cell 3380
1050s_J16


title: kidney cell 3381, Lean, 11 weeks

description:
kidney cell 3381
1050s_J18


title: kidney cell 3383, Lean, 11 weeks

description:
kidney cell 3383
1050s_J21


title: kidney cell 3382, Lean, 11 weeks

description:
kidney cell 3382
1050s_J20


title: kidney cell 3379, Lean, 11 weeks

description:
kidney cell 3379
1050s_J15


title: kidney cell 3375, Lean, 11 weeks

description:
kidney cell 3375
1050s_J1


title: kidney cell 3376, Lean, 11 weeks

description:
kidney cell 3376
1050s_J10


title: kidney cell 3377, Lean, 11 weeks

description:
kidney cell 3377
1050s_J11


title: kidney cell 3373, Lean, 11 weeks

description:
kidney cell 3373
1050s_I8


title: kidney cell 3374, Lean, 11 weeks

description:
kidney cell 3374
1050s_I9


title: kidney cell 3372, Lean, 11 weeks

description:
kidney cell 3372
1050s_I7


title: kidney cell 3371, Lean, 11 weeks

description:
kidney cell 3371
1050s_I3


title: kidney cell 3391, Lean, 11 weeks

description:
kidney cell 3391
1050s_K10


title: kidney cell 3370, Lean, 11 weeks

description:
kidney cell 3370
1050s_I24


title: kidney cell 3369, Lean, 11 weeks

description:
kidney cell 3369
1050s_I21


title: kidney cell 3368, Lean, 11 weeks

description:
kidney cell 3368
1050s_I2


title: kidney cell 3367, Lean, 11 weeks

description:
kidney cell 3367
1050s_I18


title: kidney cell 3366, Lean, 11 weeks

description:
kidney cell 3366
1050s_I15


title: kidney cell 3387, Lean, 11 weeks

description:
kidney cell 3387
1050s_J5


title: kidney cell 3365, Lean, 11 weeks

description:
kidney cell 3365
1050s_I10


title: kidney cell 3362, Lean, 11 weeks

description:
kidney cell 3362
1050s_H8


title: kidney cell 3359, Lean, 11 weeks

description:
kidney cell 3359
1050s_H4


title: kidney cell 3360, Lean, 11 weeks

description:
kidney cell 3360
1050s_H6


title: kidney cell 3361, Lean, 11 weeks

description:
kidney cell 3361
1050s_H7


title: kidney cell 3378, Lean, 11 weeks

description:
kidney cell 3378
1050s_J12


title: kidney cell 3358, Lean, 11 weeks

description:
kidney cell 3358
1050s_H3


title: kidney cell 3357, Lean, 11 weeks

description:
kidney cell 3357
1050s_H24


title: kidney cell 3356, Lean, 11 weeks

description:
kidney cell 3356
1050s_H23


title: kidney cell 3354, Lean, 11 weeks

description:
kidney cell 3354
1050s_H21


title: kidney cell 3353, Lean, 11 weeks

description:
kidney cell 3353
1050s_H20


title: kidney cell 3352, Lean, 11 weeks

description:
kidney cell 3352
1050s_H2


title: kidney cell 3355, Lean, 11 weeks

description:
kidney cell 3355
1050s_H22


title: kidney cell 3351, Lean, 11 weeks

description:
kidney cell 3351
1050s_H19


title: kidney cell 3350, Lean, 11 weeks

description:
kidney cell 3350
1050s_H18


title: kidney cell 3348, Lean, 11 weeks

description:
kidney cell 3348
1050s_H15


title: kidney cell 3347, Lean, 11 weeks

description:
kidney cell 3347
1050s_H14


title: kidney cell 3349, Lean, 11 weeks

description:
kidney cell 3349
1050s_H17


title: kidney cell 3345, Lean, 11 weeks

description:
kidney cell 3345
1050s_H11


title: kidney cell 3364, Lean, 11 weeks

description:
kidney cell 3364
1050s_I1


title: kidney cell 3363, Lean, 11 weeks

description:
kidney cell 3363
1050s_H9


title: kidney cell 3342, Lean, 11 weeks

description:
kidney cell 3342
1050s_G8


title: kidney cell 3344, Lean, 11 weeks

description:
kidney cell 3344
1050s_H10


title: kidney cell 3340, Lean, 11 weeks

description:
kidney cell 3340
1050s_G3


title: kidney cell 3343, Lean, 11 weeks

description:
kidney cell 3343
1050s_H1


title: kidney cell 3346, Lean, 11 weeks

description:
kidney cell 3346
1050s_H13


title: kidney cell 3338, Lean, 11 weeks

description:
kidney cell 3338
1050s_G20


title: kidney cell 3341, Lean, 11 weeks

description:
kidney cell 3341
1050s_G6


title: kidney cell 3339, Lean, 11 weeks

description:
kidney cell 3339
1050s_G23


title: kidney cell 3336, Lean, 11 weeks

description:
kidney cell 3336
1050s_G10


title: kidney cell 3334, Lean, 11 weeks

description:
kidney cell 3334
1050s_F9


title: kidney cell 3337, Lean, 11 weeks

description:
kidney cell 3337
1050s_G15


title: kidney cell 3335, Lean, 11 weeks

description:
kidney cell 3335
1050s_G1


title: kidney cell 3333, Lean, 11 weeks

description:
kidney cell 3333
1050s_F8


title: kidney cell 3331, Lean, 11 weeks

description:
kidney cell 3331
1050s_F6


title: kidney cell 3332, Lean, 11 weeks

description:
kidney cell 3332
1050s_F7


title: kidney cell 3329, Lean, 11 weeks

description:
kidney cell 3329
1050s_F4


title: kidney cell 3330, Lean, 11 weeks

description:
kidney cell 3330
1050s_F5


title: kidney cell 3328, Lean, 11 weeks

description:
kidney cell 3328
1050s_F3


title: kidney cell 3327, Lean, 11 weeks

description:
kidney cell 3327
1050s_F24


title: kidney cell 3325, Lean, 11 weeks

description:
kidney cell 3325
1050s_F20


title: kidney cell 3324, Lean, 11 weeks

description:
kidney cell 3324
1050s_F2


title: kidney cell 3323, Lean, 11 weeks

description:
kidney cell 3323
1050s_F19


title: kidney cell 3322, Lean, 11 weeks

description:
kidney cell 3322
1050s_F18


title: kidney cell 3320, Lean, 11 weeks

description:
kidney cell 3320
1050s_F16


title: kidney cell 3319, Lean, 11 weeks

description:
kidney cell 3319
1050s_F15


title: kidney cell 3318, Lean, 11 weeks

description:
kidney cell 3318
1050s_F13


title: kidney cell 3314, Lean, 11 weeks

description:
kidney cell 3314
1050s_F1


title: kidney cell 3315, Lean, 11 weeks

description:
kidney cell 3315
1050s_F10


title: kidney cell 3317, Lean, 11 weeks

description:
kidney cell 3317
1050s_F12


title: kidney cell 3313, Lean, 11 weeks

description:
kidney cell 3313
1050s_E9


title: kidney cell 3311, Lean, 11 weeks

description:
kidney cell 3311
1050s_E7


title: kidney cell 3310, Lean, 11 weeks

description:
kidney cell 3310
1050s_E6


title: kidney cell 3308, Lean, 11 weeks

description:
kidney cell 3308
1050s_E23


title: kidney cell 3326, Lean, 11 weeks

description:
kidney cell 3326
1050s_F21


title: kidney cell 3309, Lean, 11 weeks

description:
kidney cell 3309
1050s_E24


title: kidney cell 3307, Lean, 11 weeks

description:
kidney cell 3307
1050s_E21


title: kidney cell 3305, Lean, 11 weeks

description:
kidney cell 3305
1050s_E2


title: kidney cell 3306, Lean, 11 weeks

description:
kidney cell 3306
1050s_E20


title: kidney cell 3304, Lean, 11 weeks

description:
kidney cell 3304
1050s_E19


title: kidney cell 3303, Lean, 11 weeks

description:
kidney cell 3303
1050s_E18


title: kidney cell 3302, Lean, 11 weeks

description:
kidney cell 3302
1050s_E17


title: kidney cell 3301, Lean, 11 weeks

description:
kidney cell 3301
1050s_E16


title: kidney cell 3300, Lean, 11 weeks

description:
kidney cell 3300
1050s_E15


title: kidney cell 3299, Lean, 11 weeks

description:
kidney cell 3299
1050s_E14


title: kidney cell 3321, Lean, 11 weeks

description:
kidney cell 3321
1050s_F17


title: kidney cell 3298, Lean, 11 weeks

description:
kidney cell 3298
1050s_E12


title: kidney cell 3296, Lean, 11 weeks

description:
kidney cell 3296
1050s_E10


title: kidney cell 3297, Lean, 11 weeks

description:
kidney cell 3297
1050s_E11


title: LM5

city: Durham

first: Christopher

middle: L

last: Holley

state: NC

address: 2301 Erwin Rd

country: USA

institute: Duke University

description:
LM_raw_counts.txt
LM_riboxi_score_mean.txt

data_processing:
Library strategy: RibOxi-seq
Paired end reads are first merged into single reads using bbmerge (v38.86) with a correction step (bbmerge-auto.sh ecco=t mix=t) before actual merging(bbmerge-auto.sh minoverlap=6 mininsert=20 mininsert0=20).
Partial 3' adapter is removed using cutadapt v2.10 (cutadapt --discard-untrimmed --minimum-length 20 -a CTGTAGGCACCATCAATGAC  -e 0.1 ), followed by moving the 5' random quadruplemer to read identifier line using move-umi.py from the riboxi-seq pipeline (move_umi.py -l 4 -i ATCACG -a ATCACGCTGTAGGCACCATCAATGAC -m 'pipeline'). Finally, cutadapt is used once again to remove reads that does not contain a fixed barcode at 3' end (cutadapt --discard-untrimmed --minimum-length 20 -a ATCACG -e 0.01 ).
Leishmania major strain Friedlin rRNA and small RNA transcript sequences were used to build STAR index (STAR version 2.7.5c). The Alignment was then done with STAR (STAR --outMultimapperOrder Random --outFilterMismatchNoverLmax 0.1 --alignEndsType EndToEnd --outSAMtype BAM SortedByCoordinate)
samtools is then used to index the resulting bam files before running umi_tools v1.01 to deduplicate aligned reads.
bedtools v2.29.2 was used with bamtobed option to generate bed files for each sample. The bedfiles were then loaded in R and all rows with "-" strands were removed. Reads 3' counts were calculated by summing up all rows that have the same "end" positions. Mean riboxi score for each position is then calculated by first calculating score per position for each sample (position/(average(position-1, position+1)+1)) followed by average each position across all samples.
Genome_build: Leishmania major strain Friedlin
Supplementary_files_format_and_content: Raw 3' end counts
Supplementary_files_format_and_content: Mean riboxi scores

organism: Leishmania major

source_name: Leishmania cells

growth_protocol: Leishmania major parasites were grown in M199 media supplemented with 10% FBS at 27oC.

extract_protocol:
Total RNA was extracted from Leishmania cells using TRI-reagent as per manufactures protocol.
Libraries were created following the updated RibOxi-seq protocol (https://link.springer.com/protocol/10.1007%2F978-1-0716-1851-6_22). Specifically using the rRNA protocol with 1ug total RNA input for each sample

treatment_protocol: Total RNA was subjected to fragmentation using Benzonase and several steps of oxidation, β-elimination, and dephosphorylation, thus allowing the enrichment of Nm at 3'-end of fragmented RNAs.

value: Leishmania major strain Friedlin

tag: developmental stage

value: Promastigote

tag: molecule

value: Ribosomal RNA


title: LM1


title: LM4


title: kidney cell 3316, Lean, 11 weeks

description:
kidney cell 3316
1050s_F11


title: kidney cell 3312, Lean, 11 weeks

description:
kidney cell 3312
1050s_E8


title: kidney cell 2612, Obese, 6 weeks

description:
kidney cell 2612
062s_D5

value: Obese

value: diabetic nephropathy

value: 6 weeks


title: kidney cell 2613, Obese, 6 weeks

description:
kidney cell 2613
062s_D8


title: kidney cell 2610, Obese, 6 weeks

description:
kidney cell 2610
062s_D24


title: kidney cell 2608, Obese, 6 weeks

description:
kidney cell 2608
062s_D22


title: kidney cell 2611, Obese, 6 weeks

description:
kidney cell 2611
062s_D4


title: kidney cell 2609, Obese, 6 weeks

description:
kidney cell 2609
062s_D23


title: kidney cell 2607, Obese, 6 weeks

description:
kidney cell 2607
062s_D21


title: kidney cell 2604, Obese, 6 weeks

description:
kidney cell 2604
062s_D19


title: kidney cell 2605, Obese, 6 weeks

description:
kidney cell 2605
062s_D2


title: kidney cell 2602, Obese, 6 weeks

description:
kidney cell 2602
062s_D17


title: kidney cell 2603, Obese, 6 weeks

description:
kidney cell 2603
062s_D18


title: kidney cell 2599, Obese, 6 weeks

description:
kidney cell 2599
062s_D13


title: kidney cell 2598, Obese, 6 weeks

description:
kidney cell 2598
062s_D12


title: kidney cell 2594, Obese, 6 weeks

description:
kidney cell 2594
062s_C6


title: kidney cell 2606, Obese, 6 weeks

description:
kidney cell 2606
062s_D20


title: kidney cell 2600, Obese, 6 weeks

description:
kidney cell 2600
062s_D15


title: kidney cell 2592, Obese, 6 weeks

description:
kidney cell 2592
062s_C3


title: kidney cell 2591, Obese, 6 weeks

description:
kidney cell 2591
062s_C24


title: kidney cell 2601, Obese, 6 weeks

description:
kidney cell 2601
062s_D16


title: kidney cell 2593, Obese, 6 weeks

description:
kidney cell 2593
062s_C4


title: kidney cell 2589, Obese, 6 weeks

description:
kidney cell 2589
062s_C21


title: kidney cell 2590, Obese, 6 weeks

description:
kidney cell 2590
062s_C23


title: kidney cell 2588, Obese, 6 weeks

description:
kidney cell 2588
062s_C20


title: kidney cell 2597, Obese, 6 weeks

description:
kidney cell 2597
062s_D11


title: kidney cell 2585, Obese, 6 weeks

description:
kidney cell 2585
062s_C17


title: kidney cell 2586, Obese, 6 weeks

description:
kidney cell 2586
062s_C18


title: kidney cell 2581, Obese, 6 weeks

description:
kidney cell 2581
062s_C13


title: kidney cell 2582, Obese, 6 weeks

description:
kidney cell 2582
062s_C14


title: kidney cell 2580, Obese, 6 weeks

description:
kidney cell 2580
062s_C11


title: kidney cell 2583, Obese, 6 weeks

description:
kidney cell 2583
062s_C15


title: kidney cell 2584, Obese, 6 weeks

description:
kidney cell 2584
062s_C16


title: kidney cell 2579, Obese, 6 weeks

description:
kidney cell 2579
062s_B9


title: kidney cell 2595, Obese, 6 weeks

description:
kidney cell 2595
062s_D1


title: kidney cell 2577, Obese, 6 weeks

description:
kidney cell 2577
062s_B7


title: kidney cell 2596, Obese, 6 weeks

description:
kidney cell 2596
062s_D10


title: kidney cell 2573, Obese, 6 weeks

description:
kidney cell 2573
062s_B22


title: kidney cell 2575, Obese, 6 weeks

description:
kidney cell 2575
062s_B24


title: kidney cell 2572, Obese, 6 weeks

description:
kidney cell 2572
062s_B21


title: kidney cell 2570, Obese, 6 weeks

description:
kidney cell 2570
062s_B19


title: kidney cell 2574, Obese, 6 weeks

description:
kidney cell 2574
062s_B23


title: kidney cell 2571, Obese, 6 weeks

description:
kidney cell 2571
062s_B20


title: kidney cell 2568, Obese, 6 weeks

description:
kidney cell 2568
062s_B16


title: kidney cell 2569, Obese, 6 weeks

description:
kidney cell 2569
062s_B17


title: kidney cell 2563, Obese, 6 weeks

description:
kidney cell 2563
062s_A9


title: kidney cell 2564, Obese, 6 weeks

description:
kidney cell 2564
062s_B10


title: kidney cell 2565, Obese, 6 weeks

description:
kidney cell 2565
062s_B12


title: kidney cell 2561, Obese, 6 weeks

description:
kidney cell 2561
062s_A7


title: kidney cell 2560, Obese, 6 weeks

description:
kidney cell 2560
062s_A6


title: kidney cell 2559, Obese, 6 weeks

description:
kidney cell 2559
062s_A5


title: kidney cell 2576, Obese, 6 weeks

description:
kidney cell 2576
062s_B5


title: kidney cell 2555, Obese, 6 weeks

description:
kidney cell 2555
062s_A23


title: kidney cell 2558, Obese, 6 weeks

description:
kidney cell 2558
062s_A4


title: kidney cell 2556, Obese, 6 weeks

description:
kidney cell 2556
062s_A24


title: kidney cell 2554, Obese, 6 weeks

description:
kidney cell 2554
062s_A22


title: kidney cell 2557, Obese, 6 weeks

description:
kidney cell 2557
062s_A3


title: kidney cell 2566, Obese, 6 weeks

description:
kidney cell 2566
062s_B13


title: kidney cell 2553, Obese, 6 weeks

description:
kidney cell 2553
062s_A20


title: kidney cell 2567, Obese, 6 weeks

description:
kidney cell 2567
062s_B15


title: kidney cell 2552, Obese, 6 weeks

description:
kidney cell 2552
062s_A19


title: kidney cell 2562, Obese, 6 weeks

description:
kidney cell 2562
062s_A8


title: kidney cell 2551, Obese, 6 weeks

description:
kidney cell 2551
062s_A16


title: kidney cell 2550, Obese, 6 weeks

description:
kidney cell 2550
062s_A15


title: kidney cell 2549, Obese, 6 weeks

description:
kidney cell 2549
062s_A11


title: kidney cell 2548, Obese, 6 weeks

description:
kidney cell 2548
062s_A10


title: kidney cell 2545, Lean, 6 weeks

description:
kidney cell 2545
060s_P7


title: kidney cell 2543, Lean, 6 weeks

description:
kidney cell 2543
060s_P22


title: kidney cell 2544, Lean, 6 weeks

description:
kidney cell 2544
060s_P4


title: kidney cell 2539, Lean, 6 weeks

description:
kidney cell 2539
060s_P18


title: kidney cell 2538, Lean, 6 weeks

description:
kidney cell 2538
060s_P17


title: kidney cell 2537, Lean, 6 weeks

description:
kidney cell 2537
060s_P16


title: kidney cell 2536, Lean, 6 weeks

description:
kidney cell 2536
060s_P15


title: kidney cell 2534, Lean, 6 weeks

description:
kidney cell 2534
060s_P11


title: kidney cell 2535, Lean, 6 weeks

description:
kidney cell 2535
060s_P14


title: kidney cell 2531, Lean, 6 weeks

description:
kidney cell 2531
060s_O5


title: kidney cell 2533, Lean, 6 weeks

description:
kidney cell 2533
060s_O9


title: kidney cell 2530, Lean, 6 weeks

description:
kidney cell 2530
060s_O24


title: kidney cell 2529, Lean, 6 weeks

description:
kidney cell 2529
060s_O23


title: kidney cell 2528, Lean, 6 weeks

description:
kidney cell 2528
060s_O22


title: kidney cell 2532, Lean, 6 weeks

description:
kidney cell 2532
060s_O7


title: kidney cell 2525, Lean, 6 weeks

description:
kidney cell 2525
060s_O17


title: kidney cell 2547, Lean, 6 weeks

description:
kidney cell 2547
060s_P9


title: kidney cell 2524, Lean, 6 weeks

description:
kidney cell 2524
060s_O16


title: kidney cell 2523, Lean, 6 weeks

description:
kidney cell 2523
060s_O15


title: kidney cell 2522, Lean, 6 weeks

description:
kidney cell 2522
060s_O13


title: kidney cell 2527, Lean, 6 weeks

description:
kidney cell 2527
060s_O19


title: kidney cell 2521, Lean, 6 weeks

description:
kidney cell 2521
060s_O12


title: kidney cell 2520, Lean, 6 weeks

description:
kidney cell 2520
060s_O11


title: kidney cell 2540, Lean, 6 weeks

description:
kidney cell 2540
060s_P19


title: kidney cell 2541, Lean, 6 weeks

description:
kidney cell 2541
060s_P20


title: kidney cell 2542, Lean, 6 weeks

description:
kidney cell 2542
060s_P21


title: kidney cell 2518, Lean, 6 weeks

description:
kidney cell 2518
060s_N9


title: kidney cell 2526, Lean, 6 weeks

description:
kidney cell 2526
060s_O18


title: kidney cell 2517, Lean, 6 weeks

description:
kidney cell 2517
060s_N8


title: kidney cell 2516, Lean, 6 weeks

description:
kidney cell 2516
060s_N6


title: kidney cell 2515, Lean, 6 weeks

description:
kidney cell 2515
060s_N5


title: kidney cell 2514, Lean, 6 weeks

description:
kidney cell 2514
060s_N23


title: kidney cell 2513, Lean, 6 weeks

description:
kidney cell 2513
060s_N22


title: kidney cell 2511, Lean, 6 weeks

description:
kidney cell 2511
060s_N20


title: kidney cell 2512, Lean, 6 weeks

description:
kidney cell 2512
060s_N21


title: kidney cell 2508, Lean, 6 weeks

description:
kidney cell 2508
060s_N17


title: kidney cell 2510, Lean, 6 weeks

description:
kidney cell 2510
060s_N19


title: kidney cell 2509, Lean, 6 weeks

description:
kidney cell 2509
060s_N18


title: kidney cell 2507, Lean, 6 weeks

description:
kidney cell 2507
060s_N16


title: kidney cell 2500, Lean, 6 weeks

description:
kidney cell 2500
060s_M5


title: kidney cell 2504, Lean, 6 weeks

description:
kidney cell 2504
060s_N12


title: kidney cell 2519, Lean, 6 weeks

description:
kidney cell 2519
060s_O1


title: kidney cell 2505, Lean, 6 weeks

description:
kidney cell 2505
060s_N13


title: kidney cell 2502, Lean, 6 weeks

description:
kidney cell 2502
060s_M8


title: kidney cell 2503, Lean, 6 weeks

description:
kidney cell 2503
060s_N10


title: kidney cell 2496, Lean, 6 weeks

description:
kidney cell 2496
060s_M23


title: kidney cell 2499, Lean, 6 weeks

description:
kidney cell 2499
060s_M4


title: kidney cell 2498, Lean, 6 weeks

description:
kidney cell 2498
060s_M3


title: kidney cell 2497, Lean, 6 weeks

description:
kidney cell 2497
060s_M24


title: kidney cell 2493, Lean, 6 weeks

description:
kidney cell 2493
060s_M19


title: kidney cell 2495, Lean, 6 weeks

description:
kidney cell 2495
060s_M22


title: kidney cell 2491, Lean, 6 weeks

description:
kidney cell 2491
060s_M17


title: kidney cell 2492, Lean, 6 weeks

description:
kidney cell 2492
060s_M18


title: kidney cell 2489, Lean, 6 weeks

description:
kidney cell 2489
060s_M14


title: kidney cell 2487, Lean, 6 weeks

description:
kidney cell 2487
060s_M12


title: kidney cell 2490, Lean, 6 weeks

description:
kidney cell 2490
060s_M15


title: kidney cell 2488, Lean, 6 weeks

description:
kidney cell 2488
060s_M13


title: kidney cell 2486, Lean, 6 weeks

description:
kidney cell 2486
060s_M11


title: kidney cell 2506, Lean, 6 weeks

description:
kidney cell 2506
060s_N15


title: kidney cell 2485, Lean, 6 weeks

description:
kidney cell 2485
060s_M10


title: kidney cell 2483, Lean, 6 weeks

description:
kidney cell 2483
060s_L8


title: kidney cell 2501, Lean, 6 weeks

description:
kidney cell 2501
060s_M7


title: kidney cell 2482, Lean, 6 weeks

description:
kidney cell 2482
060s_L7


title: kidney cell 2587, Obese, 6 weeks

description:
kidney cell 2587
062s_C19


title: kidney cell 2481, Lean, 6 weeks

description:
kidney cell 2481
060s_L6


title: kidney cell 2494, Lean, 6 weeks

description:
kidney cell 2494
060s_M21


title: kidney cell 2480, Lean, 6 weeks

description:
kidney cell 2480
060s_L24


title: kidney cell 2479, Lean, 6 weeks

description:
kidney cell 2479
060s_L23


title: kidney cell 2478, Lean, 6 weeks

description:
kidney cell 2478
060s_L22


title: kidney cell 2477, Lean, 6 weeks

description:
kidney cell 2477
060s_L21


title: kidney cell 2476, Lean, 6 weeks

description:
kidney cell 2476
060s_L2


title: kidney cell 2470, Lean, 6 weeks

description:
kidney cell 2470
060s_L13


title: kidney cell 2472, Lean, 6 weeks

description:
kidney cell 2472
060s_L16


title: kidney cell 2474, Lean, 6 weeks

description:
kidney cell 2474
060s_L18


title: kidney cell 2473, Lean, 6 weeks

description:
kidney cell 2473
060s_L17


title: kidney cell 2471, Lean, 6 weeks

description:
kidney cell 2471
060s_L14


title: kidney cell 2469, Lean, 6 weeks

description:
kidney cell 2469
060s_L12


title: kidney cell 2467, Lean, 6 weeks

description:
kidney cell 2467
060s_L10


title: kidney cell 2484, Lean, 6 weeks

description:
kidney cell 2484
060s_L9


title: kidney cell 2466, Lean, 6 weeks

description:
kidney cell 2466
060s_K9


title: kidney cell 2468, Lean, 6 weeks

description:
kidney cell 2468
060s_L11


title: kidney cell 2465, Lean, 6 weeks

description:
kidney cell 2465
060s_K5


title: kidney cell 2462, Lean, 6 weeks

description:
kidney cell 2462
060s_K20


title: kidney cell 2461, Lean, 6 weeks

description:
kidney cell 2461
060s_K16


title: kidney cell 2463, Lean, 6 weeks

description:
kidney cell 2463
060s_K22


title: kidney cell 2459, Lean, 6 weeks

description:
kidney cell 2459
060s_K14


title: kidney cell 2460, Lean, 6 weeks

description:
kidney cell 2460
060s_K15


title: kidney cell 2546, Lean, 6 weeks

description:
kidney cell 2546
060s_P8


title: kidney cell 2458, Lean, 6 weeks

description:
kidney cell 2458
060s_K12


title: kidney cell 2456, Lean, 6 weeks

description:
kidney cell 2456
060s_J8


title: kidney cell 2455, Lean, 6 weeks

description:
kidney cell 2455
060s_J7


title: kidney cell 2454, Lean, 6 weeks

description:
kidney cell 2454
060s_J5


title: kidney cell 2452, Lean, 6 weeks

description:
kidney cell 2452
060s_J3


title: kidney cell 2451, Lean, 6 weeks

description:
kidney cell 2451
060s_J24


title: kidney cell 2453, Lean, 6 weeks

description:
kidney cell 2453
060s_J4


title: kidney cell 2450, Lean, 6 weeks

description:
kidney cell 2450
060s_J23


title: kidney cell 2449, Lean, 6 weeks

description:
kidney cell 2449
060s_J22


title: MPRA, donor8

city: London

first: James

middle: C

last: Lee

address: The Francis Crick Institute, 1 Midland Rd

country: United Kingdom

institute: The Francis Crick Institute

data_processing:
Quality control was performed using FastQC (v0.11.9)
Barcode counts were generated using a Python script - to be counted a sequenced barcode had to be a perfect match for an oligonucleotide library barcode and be followed by at least 10 bases of the expected constant sequence (XbaI restriction site and GFP).
To be deemed a successful transfection, at least 70% of the oligonucleotide library had to be represented in the resulting count file (i.e. count >1).
Raw count data was filtered to remove barcodes with a median counts per million (cpm) < 1 in either the mRNA or DNA samples.
Barcode counts for identical constructs were collapsed (summed) and quantile normalized (normalize.quantiles function in preprocessCore package in R version 4.1.0)
Assembly: hg19
Supplementary files format and content: barcode_counts.txt is a tab-delimited text file containing the raw barcode count data for every sample; normalised_collapsed_constructs.txt is a tab delimited text file containing the filtered, quantile-normalized and collapsed count data for unique genomic constructs tested in the MPRA

organism:
Homo sapiens
synthetic construct

source_name: Inflammatory (TPP) macrophages

growth_protocol: Monocytes were positively selected using CD14 Microbeads. Macrophage differentiation was performed using conditions that model chronic inflammation (TPP): 3 days GM-CSF (50ng/mL) followed by 3 days GM-CSF, TNFa (50ng/mL), PGE2 (1mg/mL), and Pam3CSK4 (1mg/mL). All cultures were performed at 37C, 5% CO2 in antibiotic-free RPMI1640 media containing 10% FBS, GlutaMAX, and MEM Non-Essential Amino Acids. On day 6 of culture, a minimum of 2x10^7 macrophages were harvested, counted, and nucleofected with the MPRA vector library (aliquots of 5x10^6 cells nucleofected with 5µg vector in 100 uL nucleofection buffer; Human Macrophage Nucleofection Kit, Lonza) using a Nucleofector 2b (Lonza, program Y-011).

extract_protocol:
Macrophages were detached using Accutase and were lysed. RNA was extracted from cell lysates using an AllPrep DNA/RNA Mini Kit (Qiagen).
Sequencing libraries were prepared by PCR (30 cycles) using PfuUltra II polymerase (Agilent) and custom primers that annealed to a site within EGFP (F) and the universal primer site in the oligonucleotide (R). Amplified libraries were cleaned using AMPure XP beads (Beckman Coulter): 0.6×, 1.6× and 1.0×. Four sequencing libraries were made from the input MPRA plasmid library (50ng vector, 18 PCR cycles). Libraries were sequenced in pools of 6.

tag: cell type

value: Inflammatory (TPP) macrophages

tag: donor


title: MPRA, donor7


title: MPRA, donor6


title: kidney cell 2447, Lean, 6 weeks

description:
kidney cell 2447
060s_J20


title: kidney cell 2446, Lean, 6 weeks

description:
kidney cell 2446
060s_J2


title: kidney cell 2578, Obese, 6 weeks

description:
kidney cell 2578
062s_B8


title: kidney cell 2445, Lean, 6 weeks

description:
kidney cell 2445
060s_J19


title: MPRA, donor5


title: kidney cell 2464, Lean, 6 weeks

description:
kidney cell 2464
060s_K24


title: kidney cell 2457, Lean, 6 weeks

description:
kidney cell 2457
060s_J9


title: MPRA, donor4


title: kidney cell 2443, Lean, 6 weeks

description:
kidney cell 2443
060s_J17


title: MPRA, donor2


title: kidney cell 2444, Lean, 6 weeks

description:
kidney cell 2444
060s_J18


title: kidney cell 2442, Lean, 6 weeks

description:
kidney cell 2442
060s_J16


title: MPRA, donor3


title: MPRA, donor1


title: kidney cell 2475, Lean, 6 weeks

description:
kidney cell 2475
060s_L19


title: gut, D30FL3

city: Changchun

first: Yutao

last: Li

address: Jingyue Street

country: China

institute: Northeast Normal University

data_processing:
Raw sequencing data format was shown as “.fastq” and the joint sequence (adapter) was removed from the original tags using CUTADAPT 1.9. Low quality and repetitive sequences were filtered to obtain clean data. De novo splicing in TRINITY tool (Version 2.4.0) was selected to assemble the clean reads and then the software was used to perform the transcript clustering based on shared sequences contents. The longest transcript in each cluster was regarded as one Unigene. All obtained Unigenes were annotated based on known databases. Quantitative assessment for fragments per kilobase of transcript per million mapped reads (FPKM) of each Unigene was executed with the SALMON package.
Assembly: mm10
Supplementary files format and content: tab-delimited text file includes FPKM values for each sample
Supplementary files format and content: Unigene assembly result

organism: Huso dauricus

source_name: kaluga sturgeon

extract_protocol:
Commercial RNA sample extraction kit (DP419, TIANGEN, China) was selected to extract the total RNA in gut tissues. 90 mg fresh intestine tissue was ground by high-speed homogenizer (DHFSTPRP-32D, LAWSON, China) with 1 mL lysis buffer RZ to obtain homogenate and then trichloromethane was added. After staying at room temperature for 6 min, the mixture was centrifuged at 12000 rpm to obtain the aqueous phase that was mixed with absolute ethyl alcohol. RD solution was used to remove residual protein impurity in RNA samples and the purified total RNA was stored at RNase-free tubes after repeated centrifugation.
When RNA integrity number > 7.0 and A260/280 > 1.8, messenger RNA (mRNA) with poly A was caught using oligo(dT) dynabeads (25-61005, THERMO FISHER, USA) and then broken into fragment with the specific kit (E6150S, NEBNEST, USA). Double-strands complementary DNA was synthesized based on the reverse transcriptase and E. coli DNA polymerase I that was provided by LIANCHUAN BIO TECHNOLOGIES Co., LTD (Hangzhou, China). Paired-ends of the complementary DNA were added with a “A” base, which could combine with the adapter sequence. After the second strand was digested, the sequencing library (150 bp) was established by amplifying the target sequences.

value: gut

tag: treatment

value: stock enhancement for 30 d


title: kidney cell 2441, Lean, 6 weeks

description:
kidney cell 2441
060s_J15


title: kidney cell 2448, Lean, 6 weeks

description:
kidney cell 2448
060s_J21


title: kidney cell 2440, Lean, 6 weeks

description:
kidney cell 2440
060s_J14


title: kidney cell 2439, Lean, 6 weeks

description:
kidney cell 2439
060s_J12


title: gut, D30FL2


title: kidney cell 2438, Lean, 6 weeks

description:
kidney cell 2438
060s_J11


title: gut, D30FL1


title: gut, D14FL3

value: stock enhancement for 14 d


title: kidney cell 2436, Lean, 6 weeks

description:
kidney cell 2436
060s_J1


title: gut, D14FL2


title: kidney cell 2435, Lean, 6 weeks

description:
kidney cell 2435
060s_I9


title: gut, Ori3

value: stock enhancement for 0 d


title: kidney cell 2437, Lean, 6 weeks

description:
kidney cell 2437
060s_J10


title: kidney cell 2432, Lean, 6 weeks

description:
kidney cell 2432
060s_I4


title: gut, Ori1


title: kidney cell 2434, Lean, 6 weeks

description:
kidney cell 2434
060s_I8


title: kidney cell 2433, Lean, 6 weeks

description:
kidney cell 2433
060s_I6


title: TOQX_3

city: Guangzhou

first: Honghua

last: Chen

address: Haizhu District - 6-7/F, Xinhai Building, No. 231 Xingang West Road

institute: Chinese Academy of Fishery Sciences

data_processing:
clean data (clean reads) were obtained by trimming reads containing adapter, ploy-N or with low quality from raw data
Index of the reference genome was built using hisat2-2.0.4 and paired-end clean reads were mapped to the reference genome.
Stringtie-1.3.3b was used to count the read numbers mapped to each gene. And then FPKM was calculated.It normalizes for both sequencing depth and genome size
Assembly: 173339
Supplementary files format and content: tab-delimited text files include FPKM values for each Sample.

organism: Trachinotus ovatus

source_name: testes

extract_protocol:
RNA was harvested using Trizol reagent. 0.4 ug of total RNA was used for the construction of sequencing libraries
RNA libraries were prepared for sequencing using standard Illumina

value: testes

value: TOQX

value: Remove testicular tissue


title: kidney cell 2430, Lean, 6 weeks

description:
kidney cell 2430
060s_I24

value: kidney

value: Lean


title: TOQX_1


title: TOQX_2


title: kidney cell 2429, Lean, 6 weeks

description:
kidney cell 2429
060s_I23

value: control


title: TOQC_3

source_name: ovaries

value: ovaries

value: TOQC

value: Remove ovarian tissue


title: TOQC_2


title: kidney cell 2427, Lean, 6 weeks

description:
kidney cell 2427
060s_I20


title: gut, Ori2


title: kidney cell 2431, Lean, 6 weeks

description:
kidney cell 2431
060s_I3


title: kidney cell 2425, Lean, 6 weeks

description:
kidney cell 2425
060s_I19


title: ΔB11 + pPb11-B11 R2

city: Shanghai

first: Chuan

last: Wang

address: 131 # Dong An Road

institute: Fudan University

description: B11-deletion M.marinum M strain plus pSMT3  carring B11 under its native own promoter

data_processing:
RNA-seq was performed by BGI Group, Shenzhen, Guangdong, China. Briefly, a strand-specific cDNA library was constructed for each sample to keep the direction of RNA transcription. The obtained cDNA libraries were sequenced on an Illumina HiSeq 4000 machine.
SOAP (v2.21, -m 0 -x 1000 -s 28 -l 32 -v 5 -r 1 -p 3).The rest reads with adaptor，or with unknown bases more than 5%  ,or with more than 20% low-quality bases were cleared by a software developed by BGI group. After, clear reads were mapped to reference genome with Bowtie2： v2.2.5 -q --phred64 --sensitive --dpad 0 --gbar 99999999 --mp 1,1 --np 1 --score-min L,0,-0.1 -I 1 -X 1000 --), and expression value was caculated  (http://deweylab.biostat.wisc.edu/RSEM）
Assembly: Mycobacterium marinum M strain (NC_010612.1) Chromosome (https://www.ncbi.nlm.nih.gov/nuccore/NC_010612.1) and plasmid (https://www.ncbi.nlm.nih.gov/nuccore/NC_010604.1)
Supplementary files format and content: tab-delimited text files include RPKM values for each Sample

organism: Mycobacterium marinum

source_name: bacterial cultures

growth_protocol: 7H9 broth plus 10% OADC

extract_protocol:
Bacterial cultures (4 mL) were mixed with 0.2 volumes of stop solution (95% ethanol and 5% phenol) and immediately frozen in liquid nitrogen. Total RNA was isolated using the Trizol method, wherein cells were resuspended in 1 mL Trizol (Invitrogen) and 0.2 mL 0.1mm Zirconium/Silica beads (Biospec) for lysis. Bacterial lysis was achieved using a Precellys 24 homogenizer (4500 rpm, 3 cycles of 30 seconds, separated by 5-minute intervals on ice). After addition of 400 μL chloroform and centrifugation in a Phase Lock Gel tube (TIANGEN Biotech) at 13,000 rpm for 15 min, 500 μL of the aqueous phase was mixed with 450 μL isopropanol and precipitated at room temperature for 30 min. The RNA pellets were then washed with 80% ethanol, dissolved in ultra-pure water (Thermo Fisher Scientific), and the RNA concentration was determined using a NanoDrop 2000 (Thermo Fisher Scientific).
Ribosomal RNAs was removed by Biotin-labeled rRNA probe. RNA was fragmented with BGI fragmentation buffer and was reverse transcribed with random hexamer. Double chain cDNA was then blunted and phosphorylated for the 5’ end, and overhang A base in the 3’ end and ligated with T-overhang adapter. After PCR application, samples were sequenced in BGISeq-500 platform

value: M

value: bacterial cultures


title: ΔB11 + pPb11-B11 R1

value: pSMT3  carring B11 under its native own promoter


title: kidney cell 2424, Lean, 6 weeks

description:
kidney cell 2424
060s_I18

value: 6 weeks


title: kidney cell 2426, Lean, 6 weeks

description:
kidney cell 2426
060s_I2


title: ΔB11 + pCtr R2

description: sRNA B11-deleted  M.marinum M strain plus pSMT3 control empty plasmid

value: sRNA B11-deleted

value: pSMT3 control empty plasmid


title: gut, D14FL1

value: gut

value: stock enhancement for 14 d


title: kidney cell 2423, Lean, 6 weeks

description:
kidney cell 2423
060s_I17


title: ΔB11 + pCtr R1


title: kidney cell 2422, Lean, 6 weeks

description:
kidney cell 2422
060s_I16


title: WT + pCtr R1

description: Wild-type M.marinum M strain plus pSMT3 control empty plasmid

value: wild type


title: kidney cell 2420, Lean, 6 weeks

description:
kidney cell 2420
060s_I14


title: kidney cell 2419, Lean, 6 weeks

description:
kidney cell 2419
060s_I13


title: kidney cell 2421, Lean, 6 weeks

description:
kidney cell 2421
060s_I15


title: kidney cell 2428, Lean, 6 weeks

description:
kidney cell 2428
060s_I22


title: kidney cell 2418, Lean, 6 weeks

description:
kidney cell 2418
060s_I12


title: 5iLA_to_AXGY_OSKLH_3

type: genomic

city: San Francisco

first: Akira

last: Kunitomi

state: CA

address: 1650 Owens Street

institute: The J. David Gladstone Institutes

description: Naive induced pluripotent stem cells derived from human dermal fibroblasts

hyb_protocol: The Genomic DNA was hybridized onto the Infinium OmniExpress24 v1.4 DNA Analysis Kit (Illumina)

scan_protocol: Using Illumina iScan according to recommended scanner setting

data_processing:
GenomeStudio (2.0.4)
Log R ratio

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: Human induced pluripotent stem cells

label_protocol: Standard Illumina Protocol

growth_protocol: Naive PSCs were cultured on iMEFs and maintained in the naive medium.

extract_protocol: Genomic DNA were extracted from cell lysates using the AllPrep DNA/RNA Mini Kit (QIAGEN)

value: Naive induced pluripotent stem cells

tag: gender

value: Female


title: 5iLA_to_AXGY_OSKL_3


title: 5iLA_to_AXGY_OSKL_2


title: 5iLA_to_AXGY_OSKLH_1


title: kidney cell 2416, Lean, 6 weeks

description:
kidney cell 2416
060s_H8

value: kidney


title: TOQC_1


title: kidney cell 2415, Lean, 6 weeks

description:
kidney cell 2415
060s_H6

value: Lean


title: kidney cell 2414, Lean, 6 weeks

description:
kidney cell 2414
060s_H5

value: control


title: t2iLGö+Y_to_AXGY_OSKLH_3


title: kidney cell 2417, Lean, 6 weeks

description:
kidney cell 2417
060s_I11


title: t2iLGö+Y_to_AXGY_OSKLH_2


title: kidney cell 2413, Lean, 6 weeks

description:
kidney cell 2413
060s_H4


title: t2iLGö+Y_to_AXGY_OSKLH_1


title: kidney cell 2411, Lean, 6 weeks

description:
kidney cell 2411
060s_H23


title: kidney cell 2412, Lean, 6 weeks

description:
kidney cell 2412
060s_H24


title: WT + pCtr R2


title: kidney cell 2410, Lean, 6 weeks

description:
kidney cell 2410
060s_H22


title: t2iLGö+Y_to_AXGY_OSKL_3


title: t2iLGö+Y_to_AXGY_OSKL_2


title: kidney cell 2409, Lean, 6 weeks

description:
kidney cell 2409
060s_H21


title: t2iLGö+Y_to_AXGY_OSKL_1


title: 5iLA_to_AXGY_OSKLH_2


title: t2iLGö+Y_to_PXGLY_OSKLH_3


title: kidney cell 2408, Lean, 6 weeks

description:
kidney cell 2408
060s_H20


title: kidney cell 2407, Lean, 6 weeks

description:
kidney cell 2407
060s_H2


title: t2iLGö+Y_to_PXGLY_OSKLH_2


title: kidney cell 2406, Lean, 6 weeks

description:
kidney cell 2406
060s_H19


title: t2iLGö+Y_to_PXGLY OSKLH_1


title: t2iLGö+Y_to_PXGLY_OSKL_3


title: t2iLGö+Y_to_PXGLY_OSKL_2


title: kidney cell 2405, Lean, 6 weeks

description:
kidney cell 2405
060s_H18


title: kidney cell 2404, Lean, 6 weeks

description:
kidney cell 2404
060s_H17


title: kidney cell 2403, Lean, 6 weeks

description:
kidney cell 2403
060s_H16


title: 5iLA_to_AXGY_OSKL_1


title: PXGLY_OSKLH_3


title: kidney cell 2401, Lean, 6 weeks

description:
kidney cell 2401
060s_H13


title: PXGLY_OSKLH_2


title: kidney cell 2400, Lean, 6 weeks

description:
kidney cell 2400
060s_H11


title: kidney cell 2402, Lean, 6 weeks

description:
kidney cell 2402
060s_H15


title: kidney cell 2398, Lean, 6 weeks

description:
kidney cell 2398
060s_H1


title: PXGLY_OSKLH_1


title: kidney cell 2399, Lean, 6 weeks

description:
kidney cell 2399
060s_H10


title: t2iLGö+Y_to_PXGLY_OSKL_1


title: kidney cell 2396, Lean, 6 weeks

description:
kidney cell 2396
060s_G8


title: kidney cell 2397, Lean, 6 weeks

description:
kidney cell 2397
060s_G9


title: PXGLY_OSKL_2


title: t2iLGö+Y_OSKLH_3


title: PXGLY_OSKL_1


title: t2iLGö+Y_OSKLH_2


title: PXGLY_OSKL_3


title: kidney cell 2394, Lean, 6 weeks

description:
kidney cell 2394
060s_G6


title: kidney cell 2395, Lean, 6 weeks

description:
kidney cell 2395
060s_G7


title: t2iLGö+Y_OSKL_3


title: kidney cell 2392, Lean, 6 weeks

description:
kidney cell 2392
060s_G4


title: t2iLGö+Y_OSKL_2


title: kidney cell 2391, Lean, 6 weeks

description:
kidney cell 2391
060s_G3


title: t2iLGö+Y_OSKL_1


title: kidney cell 2388, Lean, 6 weeks

description:
kidney cell 2388
060s_G22


title: kidney cell 2390, Lean, 6 weeks

description:
kidney cell 2390
060s_G24


title: BWH20-P4-H12, Smart-seq2

city: Charlestown

first: Masashi

last: Nomura

state: MA

address: 149 13th street

department: Pathology

institute: Massachusetts General Hospital

data_processing:
We processed Smart-seq2 data from raw reads to gene expression matrices as previously described in Neftel et al, 2019. We used bcl2fastq to generate demultiplexed FASTQ files, and aligned the resulting paired-end scRNA-seq reads to the reference transcriptome using Bowtie (v0.12.7). Statistical analysis was done using R version 4.0.1. We merged the gene expression levels which were calculated by RSEM48 for MGH170 and MGH229 with the ones calculated for the reference samples from Tirosh 2016 (downloaded from https://singlecell.broadinstitute.org/single_cell). Analysis was done mainly using the R package scandal which is freely available at https://github.com/dravishays/scandal.  Gene expression levels were quantified as TPM (transcript-per-million reads).
Assembly: GRCh38 for Homo sapiens, mm10 for Mus musculus
Supplementary files format and content: tsv

molecule: polyA RNA

source_name: Astrocytoma single cell, BWH20

extract_protocol:
Fresh specimens were mechanically dissociated with a disposable, sterile scalpel and further enzymatically dissociated into single cell suspensions using the enzymatic brain dissociation kit (papain-based) from Miltenyi Biotec as previously reported. Tumor cells were blocked in 1% bovine serum albumin in phosphate-buffered saline solution (1% BSA / PBS). Cell suspensions were subsequently stained for flow cytometry for 30 min at 4 °C using antibodies specific for CD45 [REA747]-VioBlue and CD3 [BW264/56]-PE from Miltenyi Biotec. Cells were washed with cold PBS, and then incubated for 15 min in 1.5 mL of 1% BSA / PBS containing 1 uM calcein AM (Life Technologies) and 0.33 uM TO-PRO-3 iodide (Life Technologies). Sorting was performed with the FACS Aria Fusion Special Order System (Becton Dickinson) using 488 nm (calcein AM, 530/30 filter; CD3-PE, 585/42 filter), 640nm (TO-PRO-3, 670/14 filter), and 405 nm (CD45-VioBlue, 450/50 filter) lasers. Standard, strict forward scatter height versus area criteria were used to discriminate doublets and gate only singleton cells. Viable cells were identified by staining positive with calcein AM but negative for TO-PRO-3. We sorted individual, viable, CD45+CD3- and CD45+CD3+ immune, and CD45- non-immune single cells into 96-well plates containing cold TCL buffer (QIAGEN) with 1% beta-mercaptoethanol. Plates were frozen on dry ice immediately after sorting and stored at -80 °C prior to whole transcriptome amplification, library preparation and sequencing. Frozen tumor tissue (approximately 5mm x 5mm x 5mm) was placed into a well of a 6-well plate (Corning, Cat. No. CLS3516-50EA) containing 1 ml of CST buffer and processed on ice. Tumor tissue was chopped for 10 minutes using Noyes Spring Scissors (Fine Science Tools, Cat. No. 15514-12). The sample was then filtered through a 40 um cell strainer (Fisher Scientific, Cat. No. 22363547) and the well and filter were washed with an additional 1 ml of CST buffer. The total volume was then brought up to 5 ml with 3 ml of ST buffer and the sample was centrifuged in a 15 ml conical tube at 4°C for 5 minutes at 500 g. The supernatant was removed and the pellet was resuspended in 100 ul ST buffer. The sample was then filtered through a 35 um cell strainer (Falcon, Cat. No. 352235). Nuclei suspension was counted using disposable C-Chip Hemocytometers (INCYTO, Cat. No. DHCN012). Single-nuclei were loaded on 10x genomics or stained by Ruby (ThermoFisher, V10309) and sorted into 96 well plates. IdhR132H mouse glioma cells were cultured in the presence of 1 μM AG-881or vehicle (DMSO control) for > 2 weeks.  The treated cells were washed with cold PBS and then stained with 1 uM calcein AM (Life Technologies) and 0.33 uM TO-PRO-3 iodide (Life Technologies) for 30 min at 4°C. Sorting was performed with the FACS Aria Fusion Special Order System (Becton Dickinson) using 488 nm (calcein AM, 530/30 filter) and  640nm (TO-PRO-3, 670/14 filter). Side scatter (SSC) width versus forward scatter (FSC) area, and Trigger Pulse Width versus FSC criteria were used to discriminate doublets. Calcein AM positive and TO-PRO-3 negative live cells were sorted into 96 wells containing TCL buffer (QIAGEN) for the single-cell multi-omics experiment.
RNA from single cells or single nucleus was first purified with Agencourt RNAClean XP beads (Beckman Coulter). B65Libraries from isolated single cells were generated based on the Smart-seq2 protocol (Picelli 2014) with the following modifications.oligo-dT were used to prime reverse transcription with Maxima reverse transcriptase and locked TSO oligonucleotide, which was followed by 20 cycle PCR amplification using KAPA HiFi HotStart ReadyMix (KAPA Biosystems) with subsequent Agencourt AMPure XP bead purification as described. Libraries were tagmented using the Nextera XT Library Prep kit (Illumina) with custom barcode adapters (sequences available upon request). Libraries from 768 cells with unique barcodes were combined and sequenced using a NextSeq sequencer (Illumina). Multi-omics library (DNA methylome and transcriptome) was generated based on the Smart-RRBS protocol (Chaligne et al, 2021).

value: Astrocytoma single cell, BWH20

tag: treatment (idhi)

value: Yes


title: kidney cell 2389, Lean, 6 weeks

description:
kidney cell 2389
060s_G23


title: BWH20-P4-H09, Smart-seq2


title: BWH20-P4-H11, Smart-seq2


title: kidney cell 2386, Lean, 6 weeks

description:
kidney cell 2386
060s_G2


title: BWH20-P4-H07, Smart-seq2


title: kidney cell 2384, Lean, 6 weeks

description:
kidney cell 2384
060s_G18


title: kidney cell 2385, Lean, 6 weeks

description:
kidney cell 2385
060s_G19


title: BWH20-P4-H05, Smart-seq2


title: kidney cell 2382, Lean, 6 weeks

description:
kidney cell 2382
060s_G16


title: BWH20-P4-H06, Smart-seq2


title: BWH20-P4-H08, Smart-seq2


title: kidney cell 2383, Lean, 6 weeks

description:
kidney cell 2383
060s_G17


title: kidney cell 2381, Lean, 6 weeks

description:
kidney cell 2381
060s_G15


title: kidney cell 2393, Lean, 6 weeks

description:
kidney cell 2393
060s_G5


title: kidney cell 2380, Lean, 6 weeks

description:
kidney cell 2380
060s_G14


title: BWH20-P4-H04, Smart-seq2


title: BWH20-P4-H03, Smart-seq2


title: BWH20-P4-H02, Smart-seq2


title: t2iLGö+Y_OSKLH_1


title: BWH20-P4-H10, Smart-seq2


title: BWH20-P4-H01, Smart-seq2


title: BWH20-P4-G12, Smart-seq2


title: kidney cell 2387, Lean, 6 weeks

description:
kidney cell 2387
060s_G21


title: kidney cell 2379, Lean, 6 weeks

description:
kidney cell 2379
060s_G13


title: kidney cell 2378, Lean, 6 weeks

description:
kidney cell 2378
060s_G12


title: kidney cell 2377, Lean, 6 weeks

description:
kidney cell 2377
060s_G11


title: BWH20-P4-G10, Smart-seq2


title: BWH20-P4-G09, Smart-seq2


title: kidney cell 2375, Lean, 6 weeks

description:
kidney cell 2375
060s_F9


title: kidney cell 2374, Lean, 6 weeks

description:
kidney cell 2374
060s_F8


title: kidney cell 2376, Lean, 6 weeks

description:
kidney cell 2376
060s_G1


title: BWH20-P4-G08, Smart-seq2


title: BWH20-P4-G07, Smart-seq2


title: BWH20-P4-G06, Smart-seq2


title: kidney cell 2372, Lean, 6 weeks

description:
kidney cell 2372
060s_F6


title: kidney cell 2370, Lean, 6 weeks

description:
kidney cell 2370
060s_F4


title: BWH20-P4-G05, Smart-seq2


title: BWH20-P4-G04, Smart-seq2


title: kidney cell 2366, Lean, 6 weeks

description:
kidney cell 2366
060s_F22


title: kidney cell 2369, Lean, 6 weeks

description:
kidney cell 2369
060s_F3


title: kidney cell 2367, Lean, 6 weeks

description:
kidney cell 2367
060s_F23


title: BWH20-P4-G03, Smart-seq2


title: kidney cell 2371, Lean, 6 weeks

description:
kidney cell 2371
060s_F5


title: BWH20-P4-G01, Smart-seq2


title: BWH20-P4-G02, Smart-seq2


title: kidney cell 2368, Lean, 6 weeks

description:
kidney cell 2368
060s_F24


title: BWH20-P4-F12, Smart-seq2


title: BWH20-P4-G11, Smart-seq2


title: kidney cell 2365, Lean, 6 weeks

description:
kidney cell 2365
060s_F21


title: kidney cell 2364, Lean, 6 weeks

description:
kidney cell 2364
060s_F20


title: kidney cell 2363, Lean, 6 weeks

description:
kidney cell 2363
060s_F2


title: BWH20-P4-F07, Smart-seq2


title: kidney cell 2373, Lean, 6 weeks

description:
kidney cell 2373
060s_F7


title: kidney cell 2362, Lean, 6 weeks

description:
kidney cell 2362
060s_F18


title: kidney cell 2361, Lean, 6 weeks

description:
kidney cell 2361
060s_F17


title: BWH20-P4-F06, Smart-seq2


title: kidney cell 2360, Lean, 6 weeks

description:
kidney cell 2360
060s_F16


title: BWH20-P4-F05, Smart-seq2


title: kidney cell 2359, Lean, 6 weeks

description:
kidney cell 2359
060s_F15


title: kidney cell 2358, Lean, 6 weeks

description:
kidney cell 2358
060s_F14


title: kidney cell 2356, Lean, 6 weeks

description:
kidney cell 2356
060s_F12


title: kidney cell 2357, Lean, 6 weeks

description:
kidney cell 2357
060s_F13


title: BWH20-P4-F04, Smart-seq2


title: BWH20-P4-F03, Smart-seq2


title: BWH20-P4-E12, Smart-seq2


title: BWH20-P4-F11, Smart-seq2


title: kidney cell 2355, Lean, 6 weeks

description:
kidney cell 2355
060s_F11


title: BWH20-P4-F02, Smart-seq2


title: BWH20-P4-F10, Smart-seq2


title: kidney cell 2354, Lean, 6 weeks

description:
kidney cell 2354
060s_F10


title: BWH20-P4-F01, Smart-seq2


title: kidney cell 2352, Lean, 6 weeks

description:
kidney cell 2352
060s_E8


title: BWH20-P4-F09, Smart-seq2


title: BWH20-P4-E10, Smart-seq2


title: BWH20-P4-E09, Smart-seq2


title: BWH20-P4-F08, Smart-seq2


title: kidney cell 2351, Lean, 6 weeks

description:
kidney cell 2351
060s_E6


title: BWH20-P4-E08, Smart-seq2


title: BWH20-P4-E03, Smart-seq2


title: BWH20-P4-E04, Smart-seq2


title: kidney cell 2349, Lean, 6 weeks

description:
kidney cell 2349
060s_E4


title: BWH20-P4-E02, Smart-seq2


title: BWH20-P4-E01, Smart-seq2


title: kidney cell 2348, Lean, 6 weeks

description:
kidney cell 2348
060s_E21


title: kidney cell 2346, Lean, 6 weeks

description:
kidney cell 2346
060s_E15


title: kidney cell 2350, Lean, 6 weeks

description:
kidney cell 2350
060s_E5


title: kidney cell 2347, Lean, 6 weeks

description:
kidney cell 2347
060s_E16


title: BWH20-P4-D10, Smart-seq2


title: kidney cell 2345, Lean, 6 weeks

description:
kidney cell 2345
060s_E12


title: kidney cell 2344, Lean, 6 weeks

description:
kidney cell 2344
060s_E11


title: BWH20-P4-D11, Smart-seq2


title: BWH20-P4-D08, Smart-seq2


title: kidney cell 2342, Lean, 6 weeks

description:
kidney cell 2342
060s_D9


title: kidney cell 2341, Lean, 6 weeks

description:
kidney cell 2341
060s_D6


title: kidney cell 2353, Lean, 6 weeks

description:
kidney cell 2353
060s_F1


title: BWH20-P4-D09, Smart-seq2


title: BWH20-P4-D06, Smart-seq2


title: BWH20-P4-D04, Smart-seq2


title: kidney cell 2339, Lean, 6 weeks

description:
kidney cell 2339
060s_D4


title: kidney cell 2340, Lean, 6 weeks

description:
kidney cell 2340
060s_D5


title: BWH20-P4-D03, Smart-seq2


title: BWH20-P4-D02, Smart-seq2


title: BWH20-P4-D01, Smart-seq2


title: kidney cell 2335, Lean, 6 weeks

description:
kidney cell 2335
060s_D22


title: kidney cell 2337, Lean, 6 weeks

description:
kidney cell 2337
060s_D24


title: BWH20-P4-C12, Smart-seq2


title: kidney cell 2336, Lean, 6 weeks

description:
kidney cell 2336
060s_D23


title: kidney cell 2334, Lean, 6 weeks

description:
kidney cell 2334
060s_D20


title: BWH20-P4-C10, Smart-seq2


title: BWH20-P4-D12, Smart-seq2


title: kidney cell 2333, Lean, 6 weeks

description:
kidney cell 2333
060s_D2


title: BWH20-P4-C09, Smart-seq2


title: kidney cell 2332, Lean, 6 weeks

description:
kidney cell 2332
060s_D19


title: BWH20-P4-C08, Smart-seq2


title: kidney cell 2343, Lean, 6 weeks

description:
kidney cell 2343
060s_E1


title: BWH20-P4-C07, Smart-seq2


title: BWH20-P4-C06, Smart-seq2


title: BWH20-P4-D07, Smart-seq2


title: kidney cell 2331, Lean, 6 weeks

description:
kidney cell 2331
060s_D18


title: BWH20-P4-C05, Smart-seq2


title: kidney cell 2338, Lean, 6 weeks

description:
kidney cell 2338
060s_D3


title: kidney cell 2329, Lean, 6 weeks

description:
kidney cell 2329
060s_D16


title: kidney cell 2328, Lean, 6 weeks

description:
kidney cell 2328
060s_D15


title: BWH20-P4-C03, Smart-seq2


title: BWH20-P4-C04, Smart-seq2


title: BWH20-P4-C01, Smart-seq2


title: kidney cell 2327, Lean, 6 weeks

description:
kidney cell 2327
060s_D13


title: BWH20-P4-B12, Smart-seq2


title: kidney cell 2326, Lean, 6 weeks

description:
kidney cell 2326
060s_D11


title: kidney cell 2324, Lean, 6 weeks

description:
kidney cell 2324
060s_C8


title: BWH20-P4-B11, Smart-seq2


title: kidney cell 2325, Lean, 6 weeks

description:
kidney cell 2325
060s_D1


title: kidney cell 2323, Lean, 6 weeks

description:
kidney cell 2323
060s_C6


title: BWH20-P4-B08, Smart-seq2


title: BWH20-P4-B06, Smart-seq2


title: BWH20-P4-B07, Smart-seq2


title: kidney cell 2320, Lean, 6 weeks

description:
kidney cell 2320
060s_C3


title: kidney cell 2330, Lean, 6 weeks

description:
kidney cell 2330
060s_D17


title: kidney cell 2319, Lean, 6 weeks

description:
kidney cell 2319
060s_C24


title: BWH20-P4-B05, Smart-seq2


title: kidney cell 2318, Lean, 6 weeks

description:
kidney cell 2318
060s_C23


title: BWH20-P4-B03, Smart-seq2


title: kidney cell 2317, Lean, 6 weeks

description:
kidney cell 2317
060s_C22


title: BWH20-P4-B02, Smart-seq2


title: kidney cell 2315, Lean, 6 weeks

description:
kidney cell 2315
060s_C20


title: kidney cell 2316, Lean, 6 weeks

description:
kidney cell 2316
060s_C21


title: kidney cell 3413, Lean, 11 weeks

description:
kidney cell 3413
1050s_L15

value: 11 weeks


title: BWH20-P4-B01, Smart-seq2


title: BWH20-P4-B10, Smart-seq2


title: BWH20-P4-A12, Smart-seq2


title: BWH20-P4-A11, Smart-seq2


title: BWH20-P4-A10, Smart-seq2


title: kidney cell 2313, Lean, 6 weeks

description:
kidney cell 2313
060s_C19


title: BWH20-P4-A09, Smart-seq2


title: kidney cell 2311, Lean, 6 weeks

description:
kidney cell 2311
060s_C17


title: kidney cell 2310, Lean, 6 weeks

description:
kidney cell 2310
060s_C16


title: kidney cell 2312, Lean, 6 weeks

description:
kidney cell 2312
060s_C18


title: kidney cell 2321, Lean, 6 weeks

description:
kidney cell 2321
060s_C4


title: BWH20-P4-A08, Smart-seq2


title: BWH20-P4-A07, Smart-seq2


title: BWH20-P4-A06, Smart-seq2


title: BWH20-P4-B04, Smart-seq2


title: BWH20-P4-A05, Smart-seq2


title: kidney cell 2309, Lean, 6 weeks

description:
kidney cell 2309
060s_C15


title: kidney cell 2307, Lean, 6 weeks

description:
kidney cell 2307
060s_C13


title: kidney cell 2314, Lean, 6 weeks

description:
kidney cell 2314
060s_C2


title: BWH20-P4-A03, Smart-seq2


title: kidney cell 2305, Lean, 6 weeks

description:
kidney cell 2305
060s_C11


title: kidney cell 2322, Lean, 6 weeks

description:
kidney cell 2322
060s_C5


title: BWH20-P4-A04, Smart-seq2


title: kidney cell 2304, Lean, 6 weeks

description:
kidney cell 2304
060s_C10


title: BWH20-P4-A02, Smart-seq2


title: kidney cell 2303, Lean, 6 weeks

description:
kidney cell 2303
060s_C1


title: BWH20-P3-H12, Smart-seq2


title: kidney cell 2308, Lean, 6 weeks

description:
kidney cell 2308
060s_C14


title: kidney cell 2302, Lean, 6 weeks

description:
kidney cell 2302
060s_B9


title: BWH20-P3-H11, Smart-seq2


title: kidney cell 2300, Lean, 6 weeks

description:
kidney cell 2300
060s_B6


title: BWH20-P3-H08, Smart-seq2


title: BWH20-P3-H09, Smart-seq2


title: kidney cell 2301, Lean, 6 weeks

description:
kidney cell 2301
060s_B7


title: kidney cell 2299, Lean, 6 weeks

description:
kidney cell 2299
060s_B5


title: kidney cell 2298, Lean, 6 weeks

description:
kidney cell 2298
060s_B4


title: BWH20-P3-H06, Smart-seq2


title: BWH20-P3-H05, Smart-seq2


title: BWH20-P3-H07, Smart-seq2


title: BWH20-P3-H04, Smart-seq2


title: kidney cell 2297, Lean, 6 weeks

description:
kidney cell 2297
060s_B24


title: kidney cell 2296, Lean, 6 weeks

description:
kidney cell 2296
060s_B23


title: kidney cell 2306, Lean, 6 weeks

description:
kidney cell 2306
060s_C12


title: kidney cell 2295, Lean, 6 weeks

description:
kidney cell 2295
060s_B22


title: BWH20-P3-H03, Smart-seq2


title: BWH20-P3-H02, Smart-seq2


title: kidney cell 2294, Lean, 6 weeks

description:
kidney cell 2294
060s_B21


title: kidney cell 2293, Lean, 6 weeks

description:
kidney cell 2293
060s_B20


title: kidney cell 2292, Lean, 6 weeks

description:
kidney cell 2292
060s_B2


title: BWH20-P3-G11, Smart-seq2


title: BWH20-P3-G12, Smart-seq2


title: kidney cell 2291, Lean, 6 weeks

description:
kidney cell 2291
060s_B19


title: kidney cell 2290, Lean, 6 weeks

description:
kidney cell 2290
060s_B18


title: BWH20-P3-G10, Smart-seq2


title: BWH20-P3-H10, Smart-seq2


title: BWH20-P3-G08, Smart-seq2


title: kidney cell 2289, Lean, 6 weeks

description:
kidney cell 2289
060s_B17


title: BWH20-P3-G07, Smart-seq2


title: BWH20-P3-G06, Smart-seq2


title: kidney cell 2286, Lean, 6 weeks

description:
kidney cell 2286
060s_B13


title: BWH20-P3-G05, Smart-seq2


title: kidney cell 2285, Lean, 6 weeks

description:
kidney cell 2285
060s_B12


title: kidney cell 2284, Lean, 6 weeks

description:
kidney cell 2284
060s_B11


title: BWH20-P3-G03, Smart-seq2


title: BWH20-P3-G04, Smart-seq2


title: kidney cell 2283, Lean, 6 weeks

description:
kidney cell 2283
060s_B1


title: BWH20-P3-G02, Smart-seq2


title: kidney cell 2282, Lean, 6 weeks

description:
kidney cell 2282
060s_A9


title: BWH20-P3-F12, Smart-seq2


title: kidney cell 2281, Lean, 6 weeks

description:
kidney cell 2281
060s_A8


title: BWH20-P3-F11, Smart-seq2


title: BWH20-P3-F09, Smart-seq2


title: kidney cell 2280, Lean, 6 weeks

description:
kidney cell 2280
060s_A7


title: BWH20-P3-F08, Smart-seq2


title: BWH20-P3-F07, Smart-seq2


title: kidney cell 2279, Lean, 6 weeks

description:
kidney cell 2279
060s_A5


title: kidney cell 2288, Lean, 6 weeks

description:
kidney cell 2288
060s_B15


title: BWH20-P3-F10, Smart-seq2


title: kidney cell 2276, Lean, 6 weeks

description:
kidney cell 2276
060s_A24


title: kidney cell 2278, Lean, 6 weeks

description:
kidney cell 2278
060s_A4


title: kidney cell 2287, Lean, 6 weeks

description:
kidney cell 2287
060s_B14


title: kidney cell 2275, Lean, 6 weeks

description:
kidney cell 2275
060s_A23


title: BWH20-P3-F05, Smart-seq2


title: BWH20-P3-F06, Smart-seq2


title: BWH20-P3-F04, Smart-seq2


title: BWH20-P3-F03, Smart-seq2


title: kidney cell 2274, Lean, 6 weeks

description:
kidney cell 2274
060s_A22


title: BWH20-P3-F02, Smart-seq2


title: kidney cell 2272, Lean, 6 weeks

description:
kidney cell 2272
060s_A20


title: BWH20-P3-F01, Smart-seq2


title: kidney cell 2273, Lean, 6 weeks

description:
kidney cell 2273
060s_A21


title: kidney cell 2270, Lean, 6 weeks

description:
kidney cell 2270
060s_A19


title: BWH20-P3-E12, Smart-seq2


title: BWH20-P3-E08, Smart-seq2


title: kidney cell 2271, Lean, 6 weeks

description:
kidney cell 2271
060s_A2


title: BWH20-P3-E09, Smart-seq2


title: kidney cell 2277, Lean, 6 weeks

description:
kidney cell 2277
060s_A3


title: BWH20-P3-E07, Smart-seq2


title: kidney cell 2268, Lean, 6 weeks

description:
kidney cell 2268
060s_A17


title: kidney cell 2267, Lean, 6 weeks

description:
kidney cell 2267
060s_A16


title: kidney cell 2266, Lean, 6 weeks

description:
kidney cell 2266
060s_A15


title: BWH20-P3-E06, Smart-seq2


title: BWH20-P3-E02, Smart-seq2


title: kidney cell 2264, Lean, 6 weeks

description:
kidney cell 2264
060s_A12


title: BWH20-P3-E04, Smart-seq2


title: BWH20-P3-E01, Smart-seq2


title: kidney cell 2265, Lean, 6 weeks

description:
kidney cell 2265
060s_A14


title: BWH20-P3-D12, Smart-seq2


title: BWH20-P3-D11, Smart-seq2


title: kidney cell 2261, Lean, 6 weeks

description:
kidney cell 2261
058s_P9


title: BWH20-P3-D10, Smart-seq2


title: kidney cell 2269, Lean, 6 weeks

description:
kidney cell 2269
060s_A18


title: BWH20-P3-D09, Smart-seq2


title: BWH20-P3-D07, Smart-seq2


title: BWH20-P3-D04, Smart-seq2


title: kidney cell 2255, Lean, 6 weeks

description:
kidney cell 2255
058s_P22


title: BWH20-P3-D05, Smart-seq2


title: kidney cell 2256, Lean, 6 weeks

description:
kidney cell 2256
058s_P3


title: kidney cell 2254, Lean, 6 weeks

description:
kidney cell 2254
058s_P21


title: kidney cell 2259, Lean, 6 weeks

description:
kidney cell 2259
058s_P7


title: kidney cell 2257, Lean, 6 weeks

description:
kidney cell 2257
058s_P5


title: BWH20-P3-D02, Smart-seq2


title: kidney cell 2258, Lean, 6 weeks

description:
kidney cell 2258
058s_P6


title: kidney cell 2263, Lean, 6 weeks

description:
kidney cell 2263
060s_A11


title: BWH20-P3-C12, Smart-seq2


title: kidney cell 2252, Lean, 6 weeks

description:
kidney cell 2252
058s_P2


title: BWH20-P3-D01, Smart-seq2


title: kidney cell 2262, Lean, 6 weeks

description:
kidney cell 2262
060s_A1


title: kidney cell 2253, Lean, 6 weeks

description:
kidney cell 2253
058s_P20


title: kidney cell 2251, Lean, 6 weeks

description:
kidney cell 2251
058s_P19


title: BWH20-P3-C11, Smart-seq2


title: BWH20-P3-C09, Smart-seq2


title: kidney cell 2260, Lean, 6 weeks

description:
kidney cell 2260
058s_P8


title: kidney cell 2250, Lean, 6 weeks

description:
kidney cell 2250
058s_P18


title: kidney cell 2249, Lean, 6 weeks

description:
kidney cell 2249
058s_P17


title: BWH20-P3-C10, Smart-seq2


title: BWH20-P3-C08, Smart-seq2


title: BWH20-P3-D08, Smart-seq2


title: kidney cell 2248, Lean, 6 weeks

description:
kidney cell 2248
058s_P16


title: kidney cell 2247, Lean, 6 weeks

description:
kidney cell 2247
058s_P15


title: BWH20-P3-C06, Smart-seq2


title: kidney cell 2246, Lean, 6 weeks

description:
kidney cell 2246
058s_P14


title: BWH20-P3-C05, Smart-seq2


title: kidney cell 2245, Lean, 6 weeks

description:
kidney cell 2245
058s_P13


title: BWH20-P3-C07, Smart-seq2


title: kidney cell 2244, Lean, 6 weeks

description:
kidney cell 2244
058s_P12


title: BWH20-P3-C04, Smart-seq2


title: kidney cell 2243, Lean, 6 weeks

description:
kidney cell 2243
058s_P11


title: BWH20-P3-C03, Smart-seq2


title: BWH20-P3-C02, Smart-seq2


title: kidney cell 2242, Lean, 6 weeks

description:
kidney cell 2242
058s_P10


title: kidney cell 2241, Lean, 6 weeks

description:
kidney cell 2241
058s_P1


title: BWH20-P3-C01, Smart-seq2


title: BWH20-P3-B12, Smart-seq2


title: kidney cell 2240, Lean, 6 weeks

description:
kidney cell 2240
058s_O9


title: kidney cell 2238, Lean, 6 weeks

description:
kidney cell 2238
058s_O5


title: kidney cell 2237, Lean, 6 weeks

description:
kidney cell 2237
058s_O4


title: BWH20-P3-B10, Smart-seq2


title: kidney cell 2235, Lean, 6 weeks

description:
kidney cell 2235
058s_O24


title: BWH20-P3-B06, Smart-seq2


title: BWH20-P3-B11, Smart-seq2


title: BWH20-P3-B07, Smart-seq2


title: BWH20-P3-B09, Smart-seq2


title: BWH20-P3-B08, Smart-seq2


title: kidney cell 2232, Lean, 6 weeks

description:
kidney cell 2232
058s_O21


title: kidney cell 2236, Lean, 6 weeks

description:
kidney cell 2236
058s_O3


title: kidney cell 2233, Lean, 6 weeks

description:
kidney cell 2233
058s_O22


title: kidney cell 2239, Lean, 6 weeks

description:
kidney cell 2239
058s_O8


title: BWH20-P3-B05, Smart-seq2


title: kidney cell 2234, Lean, 6 weeks

description:
kidney cell 2234
058s_O23


title: kidney cell 2231, Lean, 6 weeks

description:
kidney cell 2231
058s_O20


title: BWH20-P3-B02, Smart-seq2


title: BWH20-P3-B01, Smart-seq2


title: kidney cell 2230, Lean, 6 weeks

description:
kidney cell 2230
058s_O18


title: BWH20-P3-A12, Smart-seq2


title: BWH20-P3-A11, Smart-seq2


title: kidney cell 2228, Lean, 6 weeks

description:
kidney cell 2228
058s_O14


title: kidney cell 2227, Lean, 6 weeks

description:
kidney cell 2227
058s_O13


title: kidney cell 2226, Lean, 6 weeks

description:
kidney cell 2226
058s_O11


title: kidney cell 2225, Lean, 6 weeks

description:
kidney cell 2225
058s_O10


title: BWH20-P3-B03, Smart-seq2


title: BWH20-P3-A07, Smart-seq2


title: BWH20-P3-A08, Smart-seq2


title: BWH20-P3-A06, Smart-seq2


title: kidney cell 2224, Lean, 6 weeks

description:
kidney cell 2224
058s_O1


title: kidney cell 2222, Lean, 6 weeks

description:
kidney cell 2222
058s_N8


title: kidney cell 2223, Lean, 6 weeks

description:
kidney cell 2223
058s_N9


title: BWH20-P3-A02, Smart-seq2


title: BWH20-P3-A05, Smart-seq2


title: kidney cell 2221, Lean, 6 weeks

description:
kidney cell 2221
058s_N7


title: kidney cell 2220, Lean, 6 weeks

description:
kidney cell 2220
058s_N6


title: BWH20-P3-A03, Smart-seq2


title: kidney cell 2219, Lean, 6 weeks

description:
kidney cell 2219
058s_N5


title: BWH20-P3-A04, Smart-seq2


title: BWH20-P3-A01, Smart-seq2


title: kidney cell 2218, Lean, 6 weeks

description:
kidney cell 2218
058s_N4


title: BWH20-P2-H12, Smart-seq2


title: BWH20-P2-H11, Smart-seq2


title: kidney cell 2217, Lean, 6 weeks

description:
kidney cell 2217
058s_N3


title: kidney cell 2229, Lean, 6 weeks

description:
kidney cell 2229
058s_O17


title: BWH20-P2-H10, Smart-seq2


title: BWH20-P3-A10, Smart-seq2


title: kidney cell 2216, Lean, 6 weeks

description:
kidney cell 2216
058s_N23


title: BWH20-P2-H09, Smart-seq2


title: kidney cell 2215, Lean, 6 weeks

description:
kidney cell 2215
058s_N22


title: kidney cell 2213, Lean, 6 weeks

description:
kidney cell 2213
058s_N20


title: BWH20-P3-A09, Smart-seq2


title: BWH20-P2-H07, Smart-seq2


title: BWH20-P2-H06, Smart-seq2


title: kidney cell 2212, Lean, 6 weeks

description:
kidney cell 2212
058s_N2


title: BWH20-P2-H05, Smart-seq2


title: kidney cell 2211, Lean, 6 weeks

description:
kidney cell 2211
058s_N19


title: kidney cell 2210, Lean, 6 weeks

description:
kidney cell 2210
058s_N18


title: BWH20-P2-H01, Smart-seq2


title: BWH20-P2-H03, Smart-seq2


title: kidney cell 2209, Lean, 6 weeks

description:
kidney cell 2209
058s_N17


title: kidney cell 2208, Lean, 6 weeks

description:
kidney cell 2208
058s_N16


title: BWH20-P2-H04, Smart-seq2


title: kidney cell 2204, Lean, 6 weeks

description:
kidney cell 2204
058s_N10


title: BWH20-P2-H02, Smart-seq2


title: BWH20-P2-G11, Smart-seq2


title: BWH20-P2-G12, Smart-seq2


title: kidney cell 2207, Lean, 6 weeks

description:
kidney cell 2207
058s_N14


title: kidney cell 2205, Lean, 6 weeks

description:
kidney cell 2205
058s_N11


title: kidney cell 2214, Lean, 6 weeks

description:
kidney cell 2214
058s_N21


title: BWH20-P2-G10, Smart-seq2


title: BWH20-P2-G08, Smart-seq2


title: BWH20-P2-G06, Smart-seq2


title: kidney cell 2203, Lean, 6 weeks

description:
kidney cell 2203
058s_N1


title: kidney cell 2200, Lean, 6 weeks

description:
kidney cell 2200
058s_M5


title: kidney cell 2202, Lean, 6 weeks

description:
kidney cell 2202
058s_M8


title: BWH20-P2-G05, Smart-seq2


title: kidney cell 2206, Lean, 6 weeks

description:
kidney cell 2206
058s_N12


title: BWH20-P2-G04, Smart-seq2


title: kidney cell 2197, Lean, 6 weeks

description:
kidney cell 2197
058s_M24


title: kidney cell 2198, Lean, 6 weeks

description:
kidney cell 2198
058s_M3


title: kidney cell 2196, Lean, 6 weeks

description:
kidney cell 2196
058s_M23


title: kidney cell 2201, Lean, 6 weeks

description:
kidney cell 2201
058s_M6


title: BWH20-P2-G01, Smart-seq2


title: BWH20-P2-G02, Smart-seq2


title: kidney cell 2193, Lean, 6 weeks

description:
kidney cell 2193
058s_M20


title: BWH20-P2-F11, Smart-seq2


title: kidney cell 2195, Lean, 6 weeks

description:
kidney cell 2195
058s_M22


title: BWH20-P2-G03, Smart-seq2


title: BWH20-P2-F09, Smart-seq2


title: kidney cell 2190, Lean, 6 weeks

description:
kidney cell 2190
058s_M18


title: BWH20-P2-F08, Smart-seq2


title: kidney cell 2194, Lean, 6 weeks

description:
kidney cell 2194
058s_M21


title: BWH20-P2-F12, Smart-seq2


title: BWH20-P2-G07, Smart-seq2


title: kidney cell 2192, Lean, 6 weeks

description:
kidney cell 2192
058s_M2


title: kidney cell 2191, Lean, 6 weeks

description:
kidney cell 2191
058s_M19


title: BWH20-P2-F06, Smart-seq2


title: kidney cell 2188, Lean, 6 weeks

description:
kidney cell 2188
058s_M16


title: BWH20-P2-F04, Smart-seq2


title: kidney cell 2189, Lean, 6 weeks

description:
kidney cell 2189
058s_M17


title: kidney cell 2199, Lean, 6 weeks

description:
kidney cell 2199
058s_M4


title: BWH20-P2-F05, Smart-seq2


title: BWH20-P2-F07, Smart-seq2


title: kidney cell 2187, Lean, 6 weeks

description:
kidney cell 2187
058s_M15


title: kidney cell 2186, Lean, 6 weeks

description:
kidney cell 2186
058s_M14


title: BWH20-P2-F10, Smart-seq2


title: BWH20-P2-F02, Smart-seq2


title: kidney cell 2185, Lean, 6 weeks

description:
kidney cell 2185
058s_M13


title: kidney cell 2184, Lean, 6 weeks

description:
kidney cell 2184
058s_M12


title: BWH20-P2-F03, Smart-seq2


title: kidney cell 2183, Lean, 6 weeks

description:
kidney cell 2183
058s_M11


title: kidney cell 2182, Lean, 6 weeks

description:
kidney cell 2182
058s_M10


title: kidney cell 2180, Lean, 6 weeks

description:
kidney cell 2180
058s_L9


title: BWH20-P2-E08, Smart-seq2


title: BWH20-P2-E09, Smart-seq2


title: BWH20-P2-E11, Smart-seq2


title: BWH20-P2-E05, Smart-seq2


title: kidney cell 2181, Lean, 6 weeks

description:
kidney cell 2181
058s_M1


title: kidney cell 2178, Lean, 6 weeks

description:
kidney cell 2178
058s_L7


title: BWH20-P2-E03, Smart-seq2


title: kidney cell 2179, Lean, 6 weeks

description:
kidney cell 2179
058s_L8


title: kidney cell 2177, Lean, 6 weeks

description:
kidney cell 2177
058s_L6


title: BWH20-P2-E01, Smart-seq2


title: kidney cell 2175, Lean, 6 weeks

description:
kidney cell 2175
058s_L4


title: BWH20-P2-D11, Smart-seq2


title: BWH20-P2-D12, Smart-seq2


title: kidney cell 2174, Lean, 6 weeks

description:
kidney cell 2174
058s_L3


title: kidney cell 2172, Lean, 6 weeks

description:
kidney cell 2172
058s_L22


title: BWH20-P2-F01, Smart-seq2


title: BWH20-P2-E12, Smart-seq2


title: BWH20-P2-D10, Smart-seq2


title: kidney cell 2171, Lean, 6 weeks

description:
kidney cell 2171
058s_L21


title: BWH20-P2-D07, Smart-seq2


title: BWH20-P2-D06, Smart-seq2


title: kidney cell 2170, Lean, 6 weeks

description:
kidney cell 2170
058s_L2


title: kidney cell 2169, Lean, 6 weeks

description:
kidney cell 2169
058s_L19


title: kidney cell 2176, Lean, 6 weeks

description:
kidney cell 2176
058s_L5


title: BWH20-P2-D03, Smart-seq2


title: BWH20-P2-D04, Smart-seq2


title: BWH20-P2-E02, Smart-seq2


title: kidney cell 2168, Lean, 6 weeks

description:
kidney cell 2168
058s_L18


title: BWH20-P2-D02, Smart-seq2


title: kidney cell 2167, Lean, 6 weeks

description:
kidney cell 2167
058s_L16


title: BWH20-P2-D01, Smart-seq2


title: BWH20-P2-C09, Smart-seq2


title: kidney cell 2165, Lean, 6 weeks

description:
kidney cell 2165
058s_L14


title: kidney cell 2163, Lean, 6 weeks

description:
kidney cell 2163
058s_L12


title: kidney cell 2173, Lean, 6 weeks

description:
kidney cell 2173
058s_L23


title: BWH20-P2-E07, Smart-seq2


title: kidney cell 2166, Lean, 6 weeks

description:
kidney cell 2166
058s_L15


title: BWH20-P2-C11, Smart-seq2


title: BWH20-P2-C08, Smart-seq2


title: kidney cell 2164, Lean, 6 weeks

description:
kidney cell 2164
058s_L13


title: BWH20-P2-C07, Smart-seq2


title: BWH20-P2-C06, Smart-seq2


title: kidney cell 2161, Lean, 6 weeks

description:
kidney cell 2161
058s_L10


title: BWH20-P2-D08, Smart-seq2


title: kidney cell 2159, Lean, 6 weeks

description:
kidney cell 2159
058s_K9


title: BWH20-P2-C04, Smart-seq2


title: kidney cell 2158, Lean, 6 weeks

description:
kidney cell 2158
058s_K8


title: BWH20-P2-C03, Smart-seq2


title: kidney cell 2157, Lean, 6 weeks

description:
kidney cell 2157
058s_K7


title: kidney cell 2156, Lean, 6 weeks

description:
kidney cell 2156
058s_K6


title: BWH20-P2-B12, Smart-seq2


title: kidney cell 2154, Lean, 6 weeks

description:
kidney cell 2154
058s_K4


title: BWH20-P2-C02, Smart-seq2


title: kidney cell 2162, Lean, 6 weeks

description:
kidney cell 2162
058s_L11


title: BWH20-P2-B07, Smart-seq2


title: kidney cell 2155, Lean, 6 weeks

description:
kidney cell 2155
058s_K5


title: BWH20-P2-B09, Smart-seq2


title: BWH20-P2-B11, Smart-seq2


title: kidney cell 2149, Lean, 6 weeks

description:
kidney cell 2149
058s_K18


title: kidney cell 2151, Lean, 6 weeks

description:
kidney cell 2151
058s_K22


title: BWH20-P2-B10, Smart-seq2


title: BWH20-P2-B06, Smart-seq2


title: kidney cell 2160, Lean, 6 weeks

description:
kidney cell 2160
058s_L1


title: BWH20-P2-B08, Smart-seq2


title: BWH20-P2-C05, Smart-seq2


title: kidney cell 2152, Lean, 6 weeks

description:
kidney cell 2152
058s_K24


title: kidney cell 2153, Lean, 6 weeks

description:
kidney cell 2153
058s_K3


title: BWH20-P2-B04, Smart-seq2


title: kidney cell 2148, Lean, 6 weeks

description:
kidney cell 2148
058s_K17


title: BWH20-P2-B03, Smart-seq2


title: kidney cell 2150, Lean, 6 weeks

description:
kidney cell 2150
058s_K21


title: kidney cell 2145, Lean, 6 weeks

description:
kidney cell 2145
058s_K13


title: kidney cell 2146, Lean, 6 weeks

description:
kidney cell 2146
058s_K15


title: kidney cell 2147, Lean, 6 weeks

description:
kidney cell 2147
058s_K16


title: BWH20-P2-B02, Smart-seq2


title: kidney cell 2144, Lean, 6 weeks

description:
kidney cell 2144
058s_K1


title: BWH20-P2-B01, Smart-seq2


title: kidney cell 2143, Lean, 6 weeks

description:
kidney cell 2143
058s_J9


title: BWH20-P2-A11, Smart-seq2


title: kidney cell 2142, Lean, 6 weeks

description:
kidney cell 2142
058s_J8


title: BWH20-P2-B05, Smart-seq2


title: BWH20-P2-A09, Smart-seq2


title: BWH20-P2-A08, Smart-seq2


title: kidney cell 2141, Lean, 6 weeks

description:
kidney cell 2141
058s_J7


title: BWH20-P2-A10, Smart-seq2


title: BWH20-P2-A07, Smart-seq2


title: kidney cell 2139, Lean, 6 weeks

description:
kidney cell 2139
058s_J5


title: BWH20-P2-A06, Smart-seq2


title: kidney cell 2137, Lean, 6 weeks

description:
kidney cell 2137
058s_J3


title: kidney cell 2138, Lean, 6 weeks

description:
kidney cell 2138
058s_J4


title: kidney cell 2136, Lean, 6 weeks

description:
kidney cell 2136
058s_J24


title: BWH20-P2-A05, Smart-seq2


title: BWH20-P2-A04, Smart-seq2


title: BWH20-P2-A02, Smart-seq2


title: kidney cell 2135, Lean, 6 weeks

description:
kidney cell 2135
058s_J23


title: kidney cell 2133, Lean, 6 weeks

description:
kidney cell 2133
058s_J21


title: BWH20-P2-A01, Smart-seq2


title: kidney cell 2132, Lean, 6 weeks

description:
kidney cell 2132
058s_J20


title: BWH20-P1-H12, Smart-seq2


title: BWH20-P1-H11, Smart-seq2


title: kidney cell 2131, Lean, 6 weeks

description:
kidney cell 2131
058s_J2


title: BWH20-P1-H08, Smart-seq2


title: kidney cell 2129, Lean, 6 weeks

description:
kidney cell 2129
058s_J18


title: BWH20-P1-H10, Smart-seq2


title: kidney cell 2130, Lean, 6 weeks

description:
kidney cell 2130
058s_J19


title: BWH20-P1-H07, Smart-seq2


title: kidney cell 2127, Lean, 6 weeks

description:
kidney cell 2127
058s_J16


title: kidney cell 2140, Lean, 6 weeks

description:
kidney cell 2140
058s_J6


title: BWH20-P2-A03, Smart-seq2


title: BWH20-P1-H05, Smart-seq2


title: kidney cell 2128, Lean, 6 weeks

description:
kidney cell 2128
058s_J17


title: BWH20-P1-H04, Smart-seq2


title: BWH20-P1-H06, Smart-seq2


title: BWH20-P1-H03, Smart-seq2


title: kidney cell 2126, Lean, 6 weeks

description:
kidney cell 2126
058s_J15


title: kidney cell 2125, Lean, 6 weeks

description:
kidney cell 2125
058s_J14


title: kidney cell 2134, Lean, 6 weeks

description:
kidney cell 2134
058s_J22


title: kidney cell 2124, Lean, 6 weeks

description:
kidney cell 2124
058s_J13


title: BWH20-P1-H02, Smart-seq2


title: kidney cell 2122, Lean, 6 weeks

description:
kidney cell 2122
058s_J10


title: BWH20-P1-G11, Smart-seq2


title: kidney cell 2121, Lean, 6 weeks

description:
kidney cell 2121
058s_J1


title: kidney cell 2120, Lean, 6 weeks

description:
kidney cell 2120
058s_I9


title: BWH20-P1-G10, Smart-seq2


title: BWH20-P1-G07, Smart-seq2


title: BWH20-P1-G05, Smart-seq2


title: BWH20-P1-G08, Smart-seq2


title: kidney cell 2119, Lean, 6 weeks

description:
kidney cell 2119
058s_I8


title: kidney cell 2117, Lean, 6 weeks

description:
kidney cell 2117
058s_I6


title: BWH20-P1-G04, Smart-seq2


title: kidney cell 2114, Lean, 6 weeks

description:
kidney cell 2114
058s_I3


title: BWH20-P1-G01, Smart-seq2


title: BWH20-P1-G03, Smart-seq2


title: BWH20-P1-G02, Smart-seq2


title: kidney cell 2108, Lean, 6 weeks

description:
kidney cell 2108
058s_I19


title: kidney cell 2123, Lean, 6 weeks

description:
kidney cell 2123
058s_J12


title: kidney cell 2116, Lean, 6 weeks

description:
kidney cell 2116
058s_I5


title: BWH20-P1-G12, Smart-seq2


title: BWH20-P1-F10, Smart-seq2


title: kidney cell 2118, Lean, 6 weeks

description:
kidney cell 2118
058s_I7


title: kidney cell 2110, Lean, 6 weeks

description:
kidney cell 2110
058s_I20


title: kidney cell 2112, Lean, 6 weeks

description:
kidney cell 2112
058s_I23


title: BWH20-P1-F11, Smart-seq2


title: BWH20-P1-F08, Smart-seq2


title: kidney cell 2109, Lean, 6 weeks

description:
kidney cell 2109
058s_I2


title: BWH20-P1-F12, Smart-seq2


title: BWH20-P1-F07, Smart-seq2


title: BWH20-P1-F06, Smart-seq2


title: kidney cell 2107, Lean, 6 weeks

description:
kidney cell 2107
058s_I18


title: kidney cell 2111, Lean, 6 weeks

description:
kidney cell 2111
058s_I21


title: kidney cell 2115, Lean, 6 weeks

description:
kidney cell 2115
058s_I4


title: kidney cell 2106, Lean, 6 weeks

description:
kidney cell 2106
058s_I16


title: BWH20-P1-F04, Smart-seq2


title: kidney cell 2104, Lean, 6 weeks

description:
kidney cell 2104
058s_I14


title: kidney cell 2103, Lean, 6 weeks

description:
kidney cell 2103
058s_I13


title: BWH20-P1-F02, Smart-seq2


title: BWH20-P1-F03, Smart-seq2


title: BWH20-P1-E11, Smart-seq2


title: BWH20-P1-F05, Smart-seq2


title: BWH20-P1-F01, Smart-seq2


title: BWH20-P1-E12, Smart-seq2


title: BWH20-P1-E10, Smart-seq2


title: BWH20-P1-E09, Smart-seq2


title: kidney cell 2098, Lean, 6 weeks

description:
kidney cell 2098
058s_H9


title: BWH20-P1-E07, Smart-seq2


title: BWH20-P1-E05, Smart-seq2


title: kidney cell 2094, Lean, 6 weeks

description:
kidney cell 2094
058s_H4


title: BWH20-P1-E03, Smart-seq2


title: kidney cell 2095, Lean, 6 weeks

description:
kidney cell 2095
058s_H6


title: BWH20-P1-E02, Smart-seq2


title: kidney cell 2105, Lean, 6 weeks

description:
kidney cell 2105
058s_I15


title: kidney cell 2093, Lean, 6 weeks

description:
kidney cell 2093
058s_H3


title: kidney cell 2092, Lean, 6 weeks

description:
kidney cell 2092
058s_H24


title: BWH20-P1-E01, Smart-seq2


title: kidney cell 2091, Lean, 6 weeks

description:
kidney cell 2091
058s_H23


title: BWH20-P1-D12, Smart-seq2


title: kidney cell 2100, Lean, 6 weeks

description:
kidney cell 2100
058s_I10


title: kidney cell 2090, Lean, 6 weeks

description:
kidney cell 2090
058s_H22


title: kidney cell 2102, Lean, 6 weeks

description:
kidney cell 2102
058s_I12


title: kidney cell 2089, Lean, 6 weeks

description:
kidney cell 2089
058s_H21


title: BWH20-P1-D11, Smart-seq2


title: kidney cell 2096, Lean, 6 weeks

description:
kidney cell 2096
058s_H7


title: BWH20-P1-D10, Smart-seq2


title: kidney cell 2101, Lean, 6 weeks

description:
kidney cell 2101
058s_I11


title: kidney cell 2097, Lean, 6 weeks

description:
kidney cell 2097
058s_H8


title: BWH20-P1-E04, Smart-seq2


title: kidney cell 2099, Lean, 6 weeks

description:
kidney cell 2099
058s_I1


title: kidney cell 2088, Lean, 6 weeks

description:
kidney cell 2088
058s_H20


title: BWH20-P1-D09, Smart-seq2


title: BWH20-P1-D07, Smart-seq2


title: kidney cell 2086, Lean, 6 weeks

description:
kidney cell 2086
058s_H19


title: kidney cell 2087, Lean, 6 weeks

description:
kidney cell 2087
058s_H2


title: kidney cell 2085, Lean, 6 weeks

description:
kidney cell 2085
058s_H18


title: BWH20-P1-D08, Smart-seq2


title: BWH20-P1-D06, Smart-seq2


title: BWH20-P1-D05, Smart-seq2


title: kidney cell 2084, Lean, 6 weeks

description:
kidney cell 2084
058s_H17


title: BWH20-P1-D04, Smart-seq2


title: kidney cell 2083, Lean, 6 weeks

description:
kidney cell 2083
058s_H16


title: kidney cell 2082, Lean, 6 weeks

description:
kidney cell 2082
058s_H15


title: BWH20-P1-D03, Smart-seq2


title: kidney cell 2081, Lean, 6 weeks

description:
kidney cell 2081
058s_H14


title: BWH20-P1-D02, Smart-seq2


title: BWH20-P1-C12, Smart-seq2


title: kidney cell 2080, Lean, 6 weeks

description:
kidney cell 2080
058s_H13


title: kidney cell 2079, Lean, 6 weeks

description:
kidney cell 2079
058s_H12


title: BWH20-P1-C11, Smart-seq2


title: kidney cell 2078, Lean, 6 weeks

description:
kidney cell 2078
058s_H11


title: BWH20-P1-C10, Smart-seq2


title: kidney cell 2077, Lean, 6 weeks

description:
kidney cell 2077
058s_H10


title: BWH20-P1-C09, Smart-seq2


title: kidney cell 2076, Lean, 6 weeks

description:
kidney cell 2076
058s_H1


title: BWH20-P1-C08, Smart-seq2


title: BWH20-P1-C06, Smart-seq2


title: kidney cell 2073, Lean, 6 weeks

description:
kidney cell 2073
058s_G7


title: BWH20-P1-C02, Smart-seq2


title: kidney cell 2074, Lean, 6 weeks

description:
kidney cell 2074
058s_G8


title: BWH20-P1-C07, Smart-seq2


title: BWH20-P1-C03, Smart-seq2


title: kidney cell 2075, Lean, 6 weeks

description:
kidney cell 2075
058s_G9


title: kidney cell 2072, Lean, 6 weeks

description:
kidney cell 2072
058s_G6


title: BWH20-P1-C04, Smart-seq2


title: BWH20-P1-B12, Smart-seq2


title: kidney cell 2071, Lean, 6 weeks

description:
kidney cell 2071
058s_G5


title: BWH20-P1-B11, Smart-seq2


title: BWH20-P1-B10, Smart-seq2


title: kidney cell 2068, Lean, 6 weeks

description:
kidney cell 2068
058s_G24


title: kidney cell 2069, Lean, 6 weeks

description:
kidney cell 2069
058s_G3


title: BWH20-P1-B08, Smart-seq2


title: kidney cell 2067, Lean, 6 weeks

description:
kidney cell 2067
058s_G23


title: BWH20-P1-B09, Smart-seq2


title: kidney cell 2066, Lean, 6 weeks

description:
kidney cell 2066
058s_G22


title: BWH20-P1-B06, Smart-seq2


title: kidney cell 2070, Lean, 6 weeks

description:
kidney cell 2070
058s_G4


title: BWH20-P1-B03, Smart-seq2


title: kidney cell 2064, Lean, 6 weeks

description:
kidney cell 2064
058s_G20


title: BWH20-P1-B05, Smart-seq2


title: kidney cell 2063, Lean, 6 weeks

description:
kidney cell 2063
058s_G2


title: kidney cell 2062, Lean, 6 weeks

description:
kidney cell 2062
058s_G19


title: BWH20-P1-B02, Smart-seq2


title: BWH20-P1-B01, Smart-seq2


title: BWH20-P1-A11, Smart-seq2


title: BWH20-P1-A12, Smart-seq2


title: BWH20-P1-A10, Smart-seq2


title: kidney cell 2058, Lean, 6 weeks

description:
kidney cell 2058
058s_G15