title: In vivo human muscle [C537]

description: human skeletal muscle


title: In vivo human muscle [C525]

status: Public on Jul 31 2018

type: RNA

city: Stirling

first: James

last: Timmons

address: Bridge of Allan

country: United Kingdom

institute: Augur Precision Medicine LTD

description: human skeletal muscle

hyb_protocol: Arrays were washed, stained and scanned following Affymetrix standard procedures.

scan_protocol: Affymetrix Gene Chip Scanner

data_processing: The data was analyzed with a transcript level custom CDF. The CDF file is available on the platform record. We have used aroma.affymetrix to normalise our data (RMA)

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: In vivo human muscle

label_protocol: Ambions WT expression kit to produce cDNA. The cDNA was fragmented and labeled with GeneChip WT Terminal labeling kit (Affymetrix). The hybridization of cDNA to exon array was 16h at 45 degrees. The arrays were washed in Affymetrix FS450 wash stations

extract_protocol: Total RNA was isolated by TRIzol (Invitrogen) according to the manufacturers protocol. RNA was dissolved in 20ul of RNAse-free water and quantified using a Nanodrop 2000 (NanoDrop technologies).

tag: tissue

value: vastus lateralis

tag: developmental stage

value: middle aged adult


title: In vivo human muscle [C522]

description: human skeletal muscle


title: In vivo human muscle [C552]

description: human skeletal muscle

value: young adult


title: In vivo human muscle [A56]

description: human skeletal muscle


title: In vivo human muscle [C519]

description: human skeletal muscle

value: older adult


title: In vivo human muscle [A26]

description: human skeletal muscle


title: In vivo human muscle [C555]

description: human skeletal muscle


title: In vivo human muscle [A41]

description: human skeletal muscle


title: In vivo human muscle [A20]

description: human skeletal muscle


title: In vivo human muscle [C507]

description: human skeletal muscle


title: E15 immobilized tibia rep 2

status: Public on Dec 31 2016

description:
E15_T_DMB_F09
Decamethonium bromide treated

hyb_protocol: Arrays were washed, stained and scanned following Affymetrix standard procedures, using an Affymetrix 3000 7G scanner and Affymetrix 450 wash station. A visual inspection of each array was carried out.

data_processing: The data was analyzed with the affy package from Bioconductor using the RMA algorithm. The expression measure is given in log base 2 scale

organism: Gallus gallus

source_name: E15 immobilized tibia

label_protocol: Ambion’s WT expression kit to produce cDNA. The cDNA was fragmented and labeled with GeneChip WT Terminal labeling kit (Affymetrix). The hybridization of cDNA to exon array was 16h at 45 degrees. The arrays were washed in Affymetrix FS450 wash stations

extract_protocol: Growth plate cartilage samples from each age/treatment group were immersed in QIAzol (Qiagen, Manchester, UK) and homogenised using a plastic pestle. Total RNA was isolated using a Mini Kit (Qiagen) according to the manufacturer's instructions.

tag: agent

value: Decamethonium bromide

tag: age

value: 15 days

value: Proximal tibia growth plate cartilage


title: In vivo human muscle [A14]

description: human skeletal muscle


title: E15 control tibia rep 2

description:
E15_T_S_A09
Vehicle treated control

source_name: E15 control tibia

value: control


title: E15 immobilized femur rep 1

description:
E15_F_DMB_C05
Decamethonium bromide treated

source_name: E15 immobilized femur

value: Distal femur growth plate cartilage


title: E15 immobilized tibia rep 1

description:
E15_T_DMB_D07
Decamethonium bromide treated


title: E13 control tibia rep 2

description:
E13_T_S_E09
Vehicle treated control

source_name: E13 control tibia

value: 13 days


title: E15 control femur rep 1

description:
E15_F_S_E05
Vehicle treated control

source_name: E15 control femur


title: E15 immobilized femur rep 2

description:
E15_F_DMB_F05
Decamethonium bromide treated


title: E15 immobilized tibia rep 3

description:
E15_T_DMB_H09
Decamethonium bromide treated


title: E13 control femur rep 3

description:
E13_F_S_E07
Vehicle treated control

source_name: E13 control femur


title: E15 control tibia rep 3

description:
E15_T_S_A07
Vehicle treated control


title: E15 immobilized femur rep 3

description:
E15_F_DMB_B05
Decamethonium bromide treated


title: E13 control tibia rep 1

description:
E13_T_S_D09
Vehicle treated control


title: E12 control femur rep 1

description:
E12_F_S_A05
Vehicle treated control

source_name: E12 control femur

value: 12 days


title: E15 control tibia rep 1

description:
E15_T_S_C07
Vehicle treated control


title: E12 control tibia rep 3

description:
E12_T_S_C09
Vehicle treated control

source_name: E12 control tibia


title: E13 control tibia rep 3

description:
E13_T_S_F07
Vehicle treated control


title: E12 control tibia rep 1

description:
E12_T_S_G07
Vehicle treated control


title: E12 control femur rep 3

description:
E12_F_S_B09
Vehicle treated control


title: E13 control femur rep 1

description:
E13_F_S_B07
Vehicle treated control


title: E13 control femur rep 2

description:
E13_F_S_H07
Vehicle treated control


title: E12 control tibia rep 2

description:
E12_T_S_H05
Vehicle treated control


title: E12 control femur rep 2

description:
E12_F_S_D05
Vehicle treated control


title: In vivo human muscle [C516]

description: human skeletal muscle


title: TW-57 Pre-Adipose c3353

status: Public on Aug 05 2016

hyb_protocol: Illumina Human HT-12 v4 (BD-103-0604).

scan_protocol: Illumina BeadArray Scanner.

data_processing: Quantile normalisation was done on the log2 non-normalised data using LIMMA R package.

source_name: Adipose, APMD diet, pre-diet

label_protocol: Illumina® TotalPrep™-96 RNA Amplification Kit (Life Technologies 4393543).

extract_protocol: Agencourt RNAdvance Tissue Kit (Beckman Coulter A32646).

value: adipose

tag: diet group

value: adequate protein, moderate dairy (APMD)

tag: time point

value: pre-diet

tag: individual


title: WB-66 Pre-Adipose c3361

source_name: Adipose, HPHD diet, pre-diet

value: high protein, high dairy (HPHD)


title: VA-94 Post-Adipose c3355

source_name: Adipose, APLD diet, post-diet

value: adequate protein, low dairy (APLD)

value: post-diet


title: ZT-61 Pre-Adipose c3369


title: ZT-61 Post-Adipose c3367

source_name: Adipose, HPHD diet, post-diet


title: TW-57 Post-Adipose c3351

source_name: Adipose, APMD diet, post-diet


title: TR-01 Pre-Adipose c3349


title: VA-94 Pre-Adipose c3357

source_name: Adipose, APLD diet, pre-diet


title: WL-30 Pre-Adipose c3365


title: WB-66 Post-Adipose c3359


title: TK-84 Pre-Adipose c3341


title: TR-01 Post-Adipose c3347


title: TN-69 Pre-Adipose c3345


title: TN-69 Post-Adipose c3343


title: TJ-43 Pre-Adipose c3338


title: TJ-43 Post-Adipose c3337


title: E15 control femur rep 2

description:
E15_F_S_G05
Vehicle treated control


title: SW-39 Pre-Adipose c3331


title: SW-39 Post-Adipose c3329


title: TH-45 Post-Adipose c3333


title: TH-45 Pre-Adipose c3335


title: SS-40 Pre-Adipose c3325


title: SS-54 Pre-Adipose c3328


title: SS-54 Post-Adipose c3327


title: TK-84 Post-Adipose c3339


title: SP-81 Pre-Adipose c3321


title: SS-40 Post-Adipose c3323


title: SM-89 Pre-Adipose c3317


title: SM-12 Pre-Adipose c3313


title: SM-89 Post-Adipose c3315


title: SM-12 Post-Adipose c3311


title: SK-53 Post-Adipose c3307


title: SC-13 Post-Adipose c3293


title: RS-16 Pre-Adipose c3283


title: SK-53 Pre-Adipose c3309


title: SC-13 Pre-Adipose c3294


title: SP-81 Post-Adipose c3319


title: RM-15 Post-Adipose c3273


title: RS-21 Post-Adipose c3285


title: SB-47 Post-Adipose c3289


title: SD-05 Pre-Adipose c3297


title: RM-15 Pre-Adipose c3275


title: RA-92 Pre-Adipose c3271


title: SK-52 Post-Adipose c3303


title: SE-85 Pre-Adipose c3301


title: SD-05 Post-Adipose c3295


title: SB-47 Pre-Adipose c3291


title: RS-21 Pre-Adipose c3287


title: SK-52 Pre-Adipose c3305


title: RS-16 Post-Adipose c3281


title: RN-11 Pre-Adipose c3279


title: RN-11 Post-Adipose c3277


title: SE-85 Post-Adipose c3299


title: PD-75 Post-Adipose c3265


title: PC-41 Pre-Adipose c3263


title: WL-30 Post-Adipose c3363


title: NS-44 Pre-Adipose c3259


title: NM-91 Post-Adipose c3253


title: MZ-80 Post-Adipose c3245


title: MR-90 Pre-Adipose c3239


title: NM-91 Pre-Adipose c3255


title: MR-90 Post-Adipose c3237


title: ND-33 Post-Adipose c3249


title: LW-25 Post-Adipose c3213


title: PC-41 Post-Adipose c3261


title: ME-27 Pre-Adipose c3235


title: MB-83 Post-Adipose c3229


title: MT-58 Post-Adipose c3241


title: MZ-80 Pre-Adipose c3247


title: ND-33 Pre-Adipose c3251


title: LW-56 Post-Adipose c3221


title: NS-44 Post-Adipose c3257


title: MT-58 Pre-Adipose c3243


title: LS-76 Pre-Adipose c3211


title: ME-27 Post-Adipose c3233


title: MB-34 Post-Adipose c3225


title: LW-25 Pre-Adipose c3215


title: LW-42 Pre-Adipose c3219


title: PD-75 Pre-Adipose c3267


title: MB-83 Pre-Adipose c3231


title: MB-34 Pre-Adipose c3227


title: LW-42 Post-Adipose c3217


title: LW-56 Pre-Adipose c3223


title: LS-26 Pre-Adipose c3207


title: LD-35 Post-Adipose c3197


title: LS-26 Post-Adipose c3205


title: KT-60 Pre-Adipose c3191


title: KR-74 Pre-Adipose c3187


title: LD-35 Pre-Adipose c3199


title: LE-29 Pre-Adipose c3203


title: KK-73 Pre-Adipose c3175


title: KR-74 Post-Adipose c3185


title: LE-29 Post-Adipose c3201


title: KP-48 Post-Adipose c3181


title: KH-78 Pre-Adipose c3172


title: KH-09 Pre-Adipose c3169


title: KT-60 Post-Adipose c3189


title: KM-82 Pre-Adipose c3179


title: KW-37 Pre-Adipose c3195


title: KD-59 Post-Adipose c3159


title: KW-37 Post-Adipose c3193


title: KH-78 Post-Adipose c3171


title: LS-76 Post-Adipose c3209


title: KM-82 Post-Adipose c3177


title: KH-09 Post-Adipose c3167


title: KB-18 Pre-Adipose c3153


title: KC-07 Pre-Adipose c3157


title: KC-07 Post-Adipose c3155


title: KP-48 Pre-Adipose c3183


title: KK-73 Post-Adipose c3173


title: KF-64 Pre-Adipose c3165


title: KF-64 Post-Adipose c3163


title: KD-59 Pre-Adipose c3161


title: KB-18 Post-Adipose c3151


title: JT-06 Post-Adipose c3147


title: JP-86 Pre-Adipose c3146


title: JT-06 Pre-Adipose c3149


title: RA-92 Post-Adipose c3269


title: JP-86 Post-Adipose c3145


title: JB-24 Pre-Adipose c3131


title: JB-31 Pre-Adipose c3135


title: JD-22 Pre-Adipose c3139


title: JH-70 Pre-Adipose c3143


title: JB-24 Post-Adipose c3129


title: JD-22 Post-Adipose c3137


title: JH-70 Post-Adipose c3141


title: IY-68 Post-Adipose c3125


title: JB-31 Post-Adipose c3133


title: HG-93 Pre-Adipose c3119


title: HS-77 Pre-Adipose c3123


title: FC-87 Post-Adipose c3107


title: FD-10 Post-Adipose c3111


title: EZ-72 Pre-Adipose c3105


title: FD-10 Pre-Adipose c3113


title: EZ-72 Post-Adipose c3103


title: ER-67 Pre-Adipose c3101


title: IY-68 Pre-Adipose c3127


title: ED-79 Post-Adipose c3095


title: FC-87 Pre-Adipose c3109


title: HS-77 Post-Adipose c3121


title: ER-67 Post-Adipose c3099


title: HG-93 Post-Adipose c3117


title: ED-79 Pre-Adipose c3097


title: ED-28 Post-Adipose c3091


title: ED-28 Pre-Adipose c3093


title: DG-65 Post-Adipose c3087


title: CK-20 Post-Adipose c3071


title: CS-62 Pre-Adipose c3081


title: CS-51 Pre-Adipose c3077


title: CW-36 Post-Adipose c3083


title: DG-65 Pre-Adipose c3089


title: CS-51 Post-Adipose c3075


title: AM-19 Pre-Adipose c3061


title: AR-71 Post-Adipose c3063


title: CW-36 Pre-Adipose c3085


title: AT-04 Pre-Adipose c3069


title: AR-71 Pre-Adipose c3065


title: AT-04 Post-Adipose c3067


title: CS-62 Post-Adipose c3079


title: AK-03 Post-Adipose c3055


title: AK-03 Pre-Adipose c3057


title: AM-19 Post-Adipose c3059


title: AH-38 Post-Adipose c3051


title: CK-20 Pre-Adipose c3073


title: AB-08 Pre-Adipose c3045


title: AE-63 Post-Adipose c3047


title: AA-55 Pre-Adipose c3040


title: AA-55 Post-Adipose c3039


title: 137450_Muscle

status: Public on Apr 20 2016

description: fresh frozen tissue biopsy

hyb_protocol: Hybridized overnight according to the Affymetrix protocol

scan_protocol: GCS3000 (Affymetrix)

data_processing: The data was analyzed with the aroma.affymetrix package from Bioconductor using the RMA algorithm. The expression measure is given at gene level using Brainarray ENSG version 19 cdf annotations

source_name: twin ID 118669

label_protocol: cRNA was biotinylated according to the standard Affymetrix protocol

extract_protocol: Total RNA was extracted using Trizol followed by purification on a Qiagen RNeasy column

value: Muscle


title: AH-38 Pre-Adipose c3053


title: 137451_Muscle

description: fresh frozen tissue biopsy


title: AE-63 Pre-Adipose c3049


title: AB-08 Post-Adipose c3043


title: 136983_Muscle

description: fresh frozen tissue biopsy

source_name: twin ID 118436


title: 136984_Muscle

description: fresh frozen tissue biopsy


title: 128938_Muscle

description: fresh frozen tissue biopsy

source_name: twin ID 114428


title: 137451_Adipose

description: fresh frozen tissue biopsy

value: Adipose


title: 106416_Muscle

description: fresh frozen tissue biopsy

source_name: twin ID 103205


title: 137450_Adipose

description: fresh frozen tissue biopsy


title: 130816_Adipose

description: fresh frozen tissue biopsy

source_name: twin ID 115362


title: 136984_Adipose

description: fresh frozen tissue biopsy


title: 117606_Muscle

description: fresh frozen tissue biopsy

source_name: twin ID 108775


title: 119466_Muscle

description: fresh frozen tissue biopsy

source_name: twin ID 109699


title: 130816_Muscle

description: fresh frozen tissue biopsy


title: 130815_Muscle

description: fresh frozen tissue biopsy


title: 128937_Muscle

description: fresh frozen tissue biopsy


title: 117607_Muscle

description: fresh frozen tissue biopsy


title: 106417_Muscle

description: fresh frozen tissue biopsy


title: 136983_Adipose

description: fresh frozen tissue biopsy


title: 128938_Adipose

description: fresh frozen tissue biopsy


title: 119466_Adipose

description: fresh frozen tissue biopsy


title: 119467_Muscle

description: fresh frozen tissue biopsy


title: 117607_Adipose

description: fresh frozen tissue biopsy


title: 106417_Adipose

description: fresh frozen tissue biopsy


title: 117606_Adipose

description: fresh frozen tissue biopsy


title: 145247_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 122544

value: Blood


title: 130815_Adipose

description: fresh frozen tissue biopsy


title: 106416_Adipose

description: fresh frozen tissue biopsy


title: 144739_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 122290


title: 145248_Blood

description: fresh frozen tissue biopsy


title: 144738_Blood

description: fresh frozen tissue biopsy


title: 137451_Blood

description: fresh frozen tissue biopsy


title: 136984_Blood

description: fresh frozen tissue biopsy


title: 137450_Blood

description: fresh frozen tissue biopsy


title: 130815_Blood

description: fresh frozen tissue biopsy


title: 128938_Blood

description: fresh frozen tissue biopsy


title: 130816_Blood

description: fresh frozen tissue biopsy


title: 125896_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 112909


title: 136983_Blood

description: fresh frozen tissue biopsy


title: 128937_Blood

description: fresh frozen tissue biopsy


title: 118483_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 109211


title: 119466_Blood

description: fresh frozen tissue biopsy


title: 117607_Blood

description: fresh frozen tissue biopsy


title: 110290_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 105133


title: 115223_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 107588


title: 118482_Blood

description: fresh frozen tissue biopsy


title: 115224_Blood

description: fresh frozen tissue biopsy


title: 119467_Blood

description: fresh frozen tissue biopsy


title: 116335_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 108142


title: 116336_Blood

description: fresh frozen tissue biopsy


title: 109765_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 104872


title: 110670_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 105323


title: 110197_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 105087


title: 109766_Blood

description: fresh frozen tissue biopsy


title: 125895_Blood

description: fresh frozen tissue biopsy


title: 106417_Blood

description: fresh frozen tissue biopsy


title: 103399_Blood

description: fresh frozen tissue biopsy

source_name: twin ID 101700


title: 106416_Blood

description: fresh frozen tissue biopsy


title: 110289_Blood

description: fresh frozen tissue biopsy


title: 103398_Blood

description: fresh frozen tissue biopsy


title: 110671_Blood

description: fresh frozen tissue biopsy


title: 117606_Blood

description: fresh frozen tissue biopsy


title: 7BLNE6

data_processing: The data was analyzed with affymetrix power tools using the RMA algorithm. The expression measure is given in log base 2 scale

organism: Mus musculus

source_name: Cultured iWAT

growth_protocol: After isolation from inguinal subcutaneous tissue white adipocyte precursors were cultured in growth medium containing DMEM with 10% (vol/vol) newborn calf serum (Invitrogen), 2.4 nM insulin, 25 ug/ml sodium ascorbate, 10 mM HEPES 4mM glutamine, 50 U/ml penicillin, and 50ug/ml streptomycin. The cells were differentiated and cultured at 37°C in an atmosphere of 5% CO2 in air with 80% humidity

extract_protocol: Total RNA was isolated by TRIzol (Invitrogen) according to the manufacturer’s protocol. RNA was dissolved in 20ul of RNAse-free water and quantified using a Nanodrop 2000 (NanoDrop technologies).

treatment_protocol: Treated with 1 uM rosiglitazone maleate (EnzoLifeSciences) and 1 uM norepinephrine (NE; Sigma-Aldrich) from the first day of culture.

tag: strain

tag: cell culture duration (in days)

tag: treatment

value: Norepinephrine


title: 6BL7d6


title: 1SV3d6


title: 7BL6NE5


title: 3SVNE6


title: 4SVR4

value: Rosiglitazone


title: 5BL3d4


title: 6BL7d4


title: 2SV7d6


title: 1SV3d5


title: 5BL3d6


title: 2SV7d5


title: 8BLR3


title: 3SVNE5


title: 4SVR6


title: 4SVR3


title: 5BL3d3


title: 8BLR4


title: 6BL7d3


title: 1SV3d3


title: 2SV7d4


title: 8BLR2


title: BLNE3


title: 7BL6NE4


title: 5BL3d2


title: 6BL7d2


title: 4SVR2


title: 3SVNE4


title: 3SVNE2


title: 3SVNE1


title: 2SV7d1


title: 8BLR6


title: 4SVR1


title: 1SV3d1


title: 7BLNE1


title: 7196843069_L

status: Public on Aug 05 2015

hyb_protocol: cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.

scan_protocol: Illumina Beadarray Scanner

data_processing: Using LUMI package in R

source_name: Blood

label_protocol: TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol

extract_protocol: RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions

tag: status

value: AD

tag: ethnicity

tag: gender

value: Male

tag: included in case -control study

value: no

value: blood


title: 7348931013_B

value: MCI

value: unkown but she's white and speaks english with a slight south african accent

value: Female


title: 7348931013_I

value: Western European


title: 7196843069_F


title: 7348931013_C


title: 7196843069_I


title: 7348931013_J

value: CTL


title: 7196843069_D

value: British


title: 7348931013_G


title: 7348931013_D


title: 7196843069_K


title: 7348931013_L


title: 7196843069_B


title: 7196843069_A


title: 7196843069_C


title: 7196843069_E


title: 7196843069_H


title: 7348931013_H


title: 7196843076_K


title: 7196843076_E


title: 7196843076_C


title: 7196843076_B


title: 7196843076_A


title: 7196843076_I


title: 7348931007_I


title: 7348931007_F


title: 7348931007_H


title: 7348931007_C

value: Other Caucasian


title: 7348931007_G


title: 7943280008_C

value: British English


title: 7348931014_G


title: 7348931014_D


title: 7943280008_H


title: 7943280008_A


title: 7943280008_I


title: 7348931007_D


title: 7348931014_C


title: 7943280008_B


title: 7348931014_F

value: Caribbean


title: 7348931007_J


title: 7196835071_J

value: borderline MCI

value: Irish


title: 7196835071_K


title: 7196835071_I


title: 7348931014_B


title: 7943280008_K


title: 7964814064_K


title: 7943280008_J


title: 7196835071_E


title: 7348931007_E


title: 7964814064_I


title: 7196835071_F


title: 7964814064_J


title: 7196835071_L


title: 7964814064_G


title: 7964814064_B


title: 7964814064_D


title: 7964814064_E


title: 7964814064_F


title: 7196843091_L


title: 7964814064_A


title: 7196843091_E


title: 7196843091_D


title: 7196843091_I


title: 7196843007_D


title: 7196843007_K


title: 7196843007_C


title: 7196843091_K


title: 7196843007_I


title: 7348931005_K


title: 7196843007_H


title: 7348931015_I


title: 7196843007_B


title: 7348931005_C


title: 7196843091_G


title: 7348931015_B


title: 7348931015_K


title: 7348931005_G


title: 7196843065_K


title: 7348931015_J


title: 7348931015_G


title: 7348931005_B


title: 7348931015_D


title: 7348931015_C


title: 7196843091_C


title: 7196843065_J


title: 7196843065_G


title: 7196843065_H


title: 7196843065_I


title: 7196843065_E


title: 7196843065_B


title: 7196843065_A


title: 7196843054_I


title: 7196843054_G


title: 7196843054_E


title: 7196843054_K


title: 7964814028_L


title: 7196843036_L


title: 7196843054_C


title: 7196843036_E


title: 7196843036_G


title: 7964814028_K


title: 7964814028_J


title: 7196843036_H


title: 7196843065_D


title: 7196843036_J


title: 7964814028_B


title: 7196843054_L


title: 7964814028_C


title: 7196843036_B


title: 7964814028_E


title: 7196843054_F


title: 7964814028_F

value: MCI to CTL


title: 7964814028_A


title: 7196835090_J


title: 7196835090_F

value: CTL to AD


title: 7196835090_K


title: 7196835090_I


title: 7196843062_K

value: AD


title: 7196835090_E


title: 7196843068_L

value: Male


title: 7196843068_J

value: OTHER

value: no


title: 7196843062_C

value: blood


title: 7196843062_D


title: 7196843062_F

value: MCI


title: 7196843068_F


title: 7196843068_H

value: Female


title: 7196843068_G


title: 7196843068_E


title: 7196843068_K


title: 7196843062_H


title: 7196835090_G


title: 7196843068_A

value: Western European


title: 7196835090_C

value: CTL


title: 7964814041_L


title: 7196843062_J


title: 7943280031_F


title: 7943280031_E


title: 7943280031_I


title: 7196843068_C


title: 7943280031_G


title: 7943280031_K


title: 7196843062_L


title: 7964814041_K


title: 7964814041_J


title: 7964814041_I


title: 7964814041_H


title: 7964814041_D


title: 7964814041_C


title: 7964814041_E


title: 7964814041_G


title: 7964814041_A


title: 7964814041_F


title: 7964814041_B


title: 7348931019_I


title: 7348931019_C


title: 7348931019_B


title: 7196843063_G


title: 7196843032_L


title: 7196843063_E


title: 7196843063_F


title: 7196843063_I


title: 7348931019_F


title: 7196843032_E


title: 7348931019_G


title: 7196843032_J


title: 7348931019_L

value: Indian


title: 7196843032_D

value: Other Caucasian


title: 7196843032_C

value: British


title: 7196843032_B


title: 7196843032_K


title: 7196843063_H


title: 7196843032_A


title: 7196843032_F

value: Caribbean


title: 7196843073_L


title: 7196843063_D


title: 7196843073_K


title: 7196843073_I


title: 7196843073_J


title: 7196843073_F


title: 7196843073_E


title: 7196843053_K


title: 7196843073_H


title: 7196843072_J


title: 7196843053_G


title: 7348931018_K


title: 7348931018_J


title: 7348931018_D


title: 7196843073_A


title: 7196843053_C


title: 7196843053_F


title: 7196843072_G


title: 7196843072_I


title: 7348931018_H


title: 7196843053_J


title: 7348931018_G


title: 7348931018_F


title: 7348931018_A


title: 7196843053_I


title: 7196843072_D


title: 7196843053_E


title: 7196843035_G


title: 7196843035_J


title: 7196843035_E


title: 7196843035_H


title: 7196843035_D


title: 7348931018_B


title: 7196843035_F


title: 7196843035_K


title: 7196843035_A


title: 7196843066_L


title: 7196843066_G


title: 7196843066_D


title: 7196843066_F


title: 7196843090_F


title: 7196843090_G


title: 7196843090_D


title: 7196843035_C


title: 7196843066_E


title: 7196843090_H


title: 7196843066_I


title: 7964814051_H


title: 7964814051_J


title: 7196843052_K

value: Asian


title: 7196843052_J


title: 7964814051_I


title: 7196843066_A


title: 7196843090_J


title: 7196843090_A


title: 7196843052_E


title: 7196843052_D

value: Irish


title: 7196843052_A


title: 7964814051_G


title: 7196843052_G


title: 7196843090_K


title: 7196843081_I


title: 7196843081_K


title: 7196843052_I


title: 7196843052_H


title: 7196843081_L


title: 7196843052_F


title: 7196843081_C


title: 7196843081_D


title: 7196843036_I

value: yes


title: 7196843072_K


title: 7964814064_H


title: 7348931007_L


title: 7196843007_A


title: 7196843081_B


title: 7348931005_H


title: 7196843052_L


title: 7196835071_H


title: 7196843081_G


title: 7196843062_E


title: 7196843053_D


title: 7196843081_E


title: 7943280008_E


title: 7196843072_L


title: 7196843069_J


title: 7196843081_H


title: 7196843036_D


title: 7196843072_A


title: 7196843007_L


title: 7196843091_A


title: 7964814051_F


title: 7196843073_C


title: 7196843081_A


title: 7196835071_B


title: 7196843007_G


title: 7196843052_C


title: 7196843065_C


title: 7196835090_A


title: 7348931015_A


title: 7348931018_E


title: 7348931015_F


title: 7348931019_A


title: 7348931019_H


title: 124-SP11-MRC-Ulsam-1631

description:
Sample name: 124
baseline biopsy sample

data_processing:
The data was analyzed with the affy package from Bioconductor using the RMA algorithm. The expression measure is given in log base 2 scale
The Cel files were analyzed with Affymetrix power tools with the RMA algorithm. A custom mps file which was generated using xps metaProbesets function.  The analysis was limited to the core probe sets designated by Affymetrix, i.e. those with the best mapping to known genes.
HuEx-1_0-st-v2.r2.pgf
Ulsam_core.mps

source_name: skeletal muscle

extract_protocol: RNA from muscle tissue taken from 130 subjects, when they were aged ~70yr and characterised as disease-free was extracted. Out of which 108 samples yielded RNA of sufficient quality

treatment_protocol: Subjects were physiologically assessed at baseline

tag: disease-free

value: disease-free

tag: age(approx)

value: 70 yr

value: skeletal muscle biopsy (baseline)

tag: survival

value: Hosp

tag: patient id


title: 7196843090_I

value: AD

tag: tissue


title: 7196843063_L

value: blood


title: 7196843063_J


title: 7348931019_K


title: 7196843091_J


title: 7196843069_G


title: 125-SP11-MRC-Ulsam-1638

description:
Sample name: 125
baseline biopsy sample


title: 7196843068_I


title: 7196843090_L

value: Male


title: 7964814028_D


title: 7943280031_H

value: Female


title: 129-SP11-MRC-Ulsam-1670

description:
Sample name: 129
baseline biopsy sample


title: 7348931015_H

value: Western European


title: 7348931005_J

value: CTL


title: 7196843063_C


title: 128-SP11-MRC-Ulsam-1661

description:
Sample name: 128
baseline biopsy sample


title: 7196843036_C


title: 7196843081_J


title: 122-SP11-MRC-Ulsam-1609

description:
Sample name: 122
baseline biopsy sample


title: 123-SP11-MRC-Ulsam-1617

description:
Sample name: 123
baseline biopsy sample

value: Death


title: 7964814028_G


title: 127-SP11-MRC-Ulsam-1655

description:
Sample name: 127
baseline biopsy sample


title: 126-SP11-MRC-Ulsam-1649

description:
Sample name: 126
baseline biopsy sample


title: 121-SP11-MRC-Ulsam-1597

description:
Sample name: 121
baseline biopsy sample


title: 118-SP11-MRC-Ulsam-1569

description:
Sample name: 118
baseline biopsy sample


title: 115-SP11-MRC-Ulsam-1529

description:
Sample name: 115
baseline biopsy sample


title: 7348931018_L


title: 114-SP11-MRC-Ulsam-1507

description:
Sample name: 114
baseline biopsy sample


title: 7348931013_K


title: 117-SP11-MRC-Ulsam-1565

description:
Sample name: 117
baseline biopsy sample


title: 7348931007_K

value: Other Caucasian


title: 7196843062_A


title: 7196843054_H


title: 120-SP11-MRC-Ulsam-1573

description:
Sample name: 120
baseline biopsy sample


title: 7964814051_C


title: 7943280008_F


title: 7196843032_G


title: 7196843054_J


title: 109-SP11-MRC-Ulsam-1435

description:
Sample name: 109
baseline biopsy sample


title: 110-SP11-MRC-Ulsam-1460

description:
Sample name: 110
baseline biopsy sample


title: 108-SP11-MRC-Ulsam-1434

description:
Sample name: 108
baseline biopsy sample


title: 111-SP11-MRC-Ulsam-1483

description:
Sample name: 111
baseline biopsy sample


title: 106-SP11-MRC-Ulsam-1406

description:
Sample name: 106
baseline biopsy sample


title: 7196843090_E


title: 116-SP11-MRC-Ulsam-1531

description:
Sample name: 116
baseline biopsy sample


title: 119-SP11-MRC-Ulsam-1571

description:
Sample name: 119
baseline biopsy sample


title: 107-SP11-MRC-Ulsam-1412

description:
Sample name: 107
baseline biopsy sample


title: 103-SP11-MRC-Ulsam-1374

description:
Sample name: 103
baseline biopsy sample


title: 7943280031_A


title: 7196843053_H


title: 7964814051_A


title: 7196843081_F


title: 102-SP11-MRC-Ulsam-1364

description:
Sample name: 102
baseline biopsy sample


title: 7348931005_F


title: 101-SP11-MRC-Ulsam-1344

description:
Sample name: 101
baseline biopsy sample


title: 100-SP11-MRC-Ulsam-1330

description:
Sample name: 100
baseline biopsy sample


title: 7196843068_D


title: 98-SP11-MRC-Ulsam-1303

description:
Sample name: 98
baseline biopsy sample


title: 7196835071_G


title: 99-SP11-MRC-Ulsam-1324

description:
Sample name: 99
baseline biopsy sample


title: 97-SP11-MRC-Ulsam-1289

description:
Sample name: 97
baseline biopsy sample


title: 7964814051_L


title: 93-SP11-MRC-Ulsam-1237

description:
Sample name: 93
baseline biopsy sample


title: 7196843091_F


title: 7196843062_I


title: 90-SP11-MRC-Ulsam-1222

description:
Sample name: 90
baseline biopsy sample


title: 7348931007_A


title: 7196843091_B


title: 7196843076_L


title: 92-SP11-MRC-Ulsam-1235

description:
Sample name: 92
baseline biopsy sample


title: 7196843076_J


title: 7964814051_B


title: 7196843053_B


title: 84-SP11-MRC-Ulsam-1182

description:
Sample name: 84
baseline biopsy sample


title: 86-SP11-MRC-Ulsam-1197

description:
Sample name: 86
baseline biopsy sample


title: 88-SP11-MRC-Ulsam-1208

description:
Sample name: 88
baseline biopsy sample


title: 7196843073_G


title: 83-SP11-MRC-Ulsam-1181

description:
Sample name: 83
baseline biopsy sample


title: 7196843073_B


title: 7196835071_A


title: 95-SP11-MRC-Ulsam-1264

description:
Sample name: 95
baseline biopsy sample


title: 82-SP11-MRC-Ulsam-1159

description:
Sample name: 82
baseline biopsy sample


title: 96-SP11-MRC-Ulsam-1277

description:
Sample name: 96
baseline biopsy sample


title: 81-SP11-MRC-Ulsam-1155

description:
Sample name: 81
baseline biopsy sample


title: 7348931019_D


title: 80-SP11-MRC-Ulsam-1131

description:
Sample name: 80
baseline biopsy sample


title: 76-SP11-MRC-Ulsam-1107

description:
Sample name: 76
baseline biopsy sample


title: 79-SP11-MRC-Ulsam-1127

description:
Sample name: 79
baseline biopsy sample


title: 77-SP11-MRC-Ulsam-1114

description:
Sample name: 77
baseline biopsy sample


title: 75-SP11-MRC-Ulsam-1091

description:
Sample name: 75
baseline biopsy sample


title: 7964814064_C


title: 68-SP11-MRC-Ulsam-1054

description:
Sample name: 68
baseline biopsy sample


title: 7196843036_A


title: 7964814064_L


title: 7196843035_L


title: 69-SP11-MRC-Ulsam-1060

description:
Sample name: 69
baseline biopsy sample


title: 66-SP11-MRC-Ulsam-1035

description:
Sample name: 66
baseline biopsy sample


title: 70-SP11-MRC-Ulsam-1062

description:
Sample name: 70
baseline biopsy sample


title: 7196843073_D


title: 7196843091_H


title: 71-SP11-MRC-Ulsam-1066

description:
Sample name: 71
baseline biopsy sample


title: 7348931015_L


title: 74-SP11-MRC-Ulsam-1088

description:
Sample name: 74
baseline biopsy sample


title: 72-SP11-MRC-Ulsam-1073

description:
Sample name: 72
baseline biopsy sample


title: 7348931007_B


title: 65-SP11-MRC-Ulsam-1034

description:
Sample name: 65
baseline biopsy sample


title: 73-SP11-MRC-Ulsam-1076

description:
Sample name: 73
baseline biopsy sample


title: 63-SP11-MRC-Ulsam-1026

description:
Sample name: 63
baseline biopsy sample


title: 7196843036_K


title: 7348931005_E


title: 7196843032_H


title: 7196843090_C


title: 7943280008_L


title: 7964814028_I


title: 62-SP11-MRC-Ulsam-1013

description:
Sample name: 62
baseline biopsy sample


title: 59-SP11-MRC-Ulsam-964

description:
Sample name: 59
baseline biopsy sample


title: 7196835090_B


title: 61-SP11-MRC-Ulsam-984

description:
Sample name: 61
baseline biopsy sample


title: 54-SP11-MRC-Ulsam-901

description:
Sample name: 54
baseline biopsy sample


title: 55-SP11-MRC-Ulsam-923

description:
Sample name: 55
baseline biopsy sample


title: 53-SP11-MRC-Ulsam-897

description:
Sample name: 53
baseline biopsy sample


title: 56-SP11-MRC-Ulsam-934

description:
Sample name: 56
baseline biopsy sample


title: 60-SP11-MRC-Ulsam-969

description:
Sample name: 60
baseline biopsy sample


title: 51-SP11-MRC-Ulsam-873

description:
Sample name: 51
baseline biopsy sample


title: 58-SP11-MRC-Ulsam-942

description:
Sample name: 58
baseline biopsy sample


title: 7964814051_D


title: 52-SP11-MRC-Ulsam-895

description:
Sample name: 52
baseline biopsy sample


title: 7196835071_C


title: 48-SP11-MRC-Ulsam-812

description:
Sample name: 48
baseline biopsy sample


title: 50-SP11-MRC-Ulsam-861

description:
Sample name: 50
baseline biopsy sample


title: 49-SP11-MRC-Ulsam-817

description:
Sample name: 49
baseline biopsy sample


title: 57-SP11-MRC-Ulsam-936

description:
Sample name: 57
baseline biopsy sample


title: 7348931019_E


title: 7196843066_B


title: 46-SP11-MRC-Ulsam-777

description:
Sample name: 46
baseline biopsy sample


title: 44-SP11-MRC-Ulsam-755

description:
Sample name: 44
baseline biopsy sample


title: 45-SP11-MRC-Ulsam-772

description:
Sample name: 45
baseline biopsy sample


title: 7196843062_B


title: 7196843072_H


title: 7348931013_A


title: 41-SP11-MRC-Ulsam-696

description:
Sample name: 41
baseline biopsy sample


title: 39-SP11-MRC-Ulsam-675

description:
Sample name: 39
baseline biopsy sample


title: 47-SP11-MRC-Ulsam-799

description:
Sample name: 47
baseline biopsy sample


title: 40-SP11-MRC-Ulsam-681

description:
Sample name: 40
baseline biopsy sample


title: 38-SP11-MRC-Ulsam-674

description:
Sample name: 38
baseline biopsy sample


title: 7943280031_L


title: 29-SP11-MRC-Ulsam-549

description:
Sample name: 29
baseline biopsy sample


title: 42-SP11-MRC-Ulsam-708

description:
Sample name: 42
baseline biopsy sample


title: 7348931005_A

value: British English


title: 7196843066_K


title: 37-SP11-MRC-Ulsam-664

description:
Sample name: 37
baseline biopsy sample


title: 31-SP11-MRC-Ulsam-576

description:
Sample name: 31
baseline biopsy sample


title: 30-SP11-MRC-Ulsam-554

description:
Sample name: 30
baseline biopsy sample


title: 35-SP11-MRC-Ulsam-632

description:
Sample name: 35
baseline biopsy sample


title: 7348931013_F


title: 7196843052_B


title: 36-SP11-MRC-Ulsam-634

description:
Sample name: 36
baseline biopsy sample


title: 28-SP11-MRC-Ulsam-521

description:
Sample name: 28
baseline biopsy sample


title: 27-SP11-MRC-Ulsam-498

description:
Sample name: 27
baseline biopsy sample


title: 26-SP11-MRC-Ulsam-465

description:
Sample name: 26
baseline biopsy sample


title: 7348931014_I


title: 34-SP11-MRC-Ulsam-621

description:
Sample name: 34
baseline biopsy sample


title: 25-SP11-MRC-Ulsam-421

description:
Sample name: 25
baseline biopsy sample


title: 7196843076_F


title: 7348931018_C


title: 23-SP11-MRC-Ulsam-397

description:
Sample name: 23
baseline biopsy sample


title: 7348931014_E


title: 7196843053_A


title: 22-SP11-MRC-Ulsam-381

description:
Sample name: 22
baseline biopsy sample


title: 19-SP11-MRC-Ulsam-355

description:
Sample name: 19
baseline biopsy sample


title: 21-SP11-MRC-Ulsam-377

description:
Sample name: 21
baseline biopsy sample


title: 7196843072_F


title: 18-SP11-MRC-Ulsam-351

description:
Sample name: 18
baseline biopsy sample


title: 7196843072_B

value: Indian


title: 14-SP11-MRC-Ulsam-300

description:
Sample name: 14
baseline biopsy sample


title: 12-SP11-MRC-Ulsam-296

description:
Sample name: 12
baseline biopsy sample


title: 7943280031_D


title: 15-SP11-MRC-Ulsam-317

description:
Sample name: 15
baseline biopsy sample


title: 13-SP11-MRC-Ulsam-298

description:
Sample name: 13
baseline biopsy sample


title: 17-SP11-MRC-Ulsam-349

description:
Sample name: 17
baseline biopsy sample


title: 11-SP11-MRC-Ulsam-255

description:
Sample name: 11
baseline biopsy sample


title: 10-SP11-MRC-Ulsam-254

description:
Sample name: 10
baseline biopsy sample


title: 20-SP11-MRC-Ulsam-373

description:
Sample name: 20
baseline biopsy sample


title: 7964814028_H

value: MCI


title: 3-SP11-MRC-Ulsam-117

description:
Sample name: 3
baseline biopsy sample


title: 4-SP11-MRC-Ulsam-152

description:
Sample name: 4
baseline biopsy sample


title: 7943280008_G


title: 7196843090_B


title: 9-SP11-MRC-Ulsam-241

description:
Sample name: 9
baseline biopsy sample


title: 1-SP11-MRC-Ulsam-32

description:
Sample name: 1
baseline biopsy sample


title: 8-SP11-MRC-Ulsam-211

description:
Sample name: 8
baseline biopsy sample


title: 7348931005_L


title: 7348931019_J


title: 7964814051_K

value: British


title: 4856076026_H

value: no


title: 7196843007_E

value: yes


title: 4856076028_D


title: 4856050046_F


title: 4856050009_E


title: 7943280031_B


title: 4856076029_I


title: 4856076038_G


title: 4856076025_F


title: 7348931005_D


title: 4856076023_D


title: 7196835071_D


title: 4856076029_L


title: 4856076030_E


title: 7196843032_I


title: 4856076026_K


title: 4856076018_L


title: 4856076027_E


title: 4856076025_L


title: 7196843054_A

value: Irish


title: 4856076025_D


title: 4856076022_K


title: 4856076022_F


title: 7196843072_E


title: 7196843076_H


title: 7196843035_I


title: 4856076022_B


title: 4856076022_A


title: 4856076019_G


title: 7196843063_A


title: 7348931013_E

value: Caribbean


title: 4856076003_L


title: 7196843054_B


title: 4856076017_G


title: 7196843007_J


title: 4856076019_B


title: 7196843054_D


title: 4856076002_H


title: 4856076008_B


title: 4856076018_G


title: 4856050058_L


title: 4856076017_D


title: 4856076002_C


title: 4856050047_E


title: 4856050046_K

value: Unknown


title: 7196843062_G


title: 7943280031_C


title: 4856050047_H


title: 4856050007_E


title: 4856050003_H


title: 4856050046_B


title: 4856050009_J


title: 7196843066_H


title: 7943280031_J


title: 4856050048_C


title: 7196843035_B


title: 4856050003_G


title: 7196843053_L


title: 4856076040_H


title: 4856050003_C


title: 4856076030_G


title: 4856050007_D


title: 7196843065_L


title: 4856076026_B


title: 4856076038_L


title: 7196843063_B


title: 4856076026_L


title: 4856076029_C


title: 7196843076_G


title: 4856076038_A


title: 7196843065_F


title: 4856076026_A


title: 4856076022_J


title: 7196843068_B


title: 4856076022_G


title: 4856076022_L


title: 4856076028_H


title: 4856076009_C


title: 4856076019_K


title: 4856076022_E


title: 4856076007_K


title: 4856076009_H


title: 4856076018_D


title: 4856076007_D


title: 4856076003_K


title: 4856076018_E


title: 4856050059_K


title: 4856076002_J


title: 4856076003_J


title: 4856076026_D


title: 4856050059_G


title: 4856076041_B


title: 4856076041_G

value: AD


title: 4856050058_B

value: blood


title: 4856076042_B


title: 4856050008_D


title: 4856050003_L


title: 4856076042_A


title: 4856050009_D

value: Male


title: 4856076041_E

value: Female


title: 4856050046_A

value: Western European


title: 4856050009_A

value: CTL


title: 4856050008_F


title: 4856076041_F


title: 4856050007_F


title: 4856076040_L


title: 4856076038_K


title: 4856050003_B


title: 4856076029_F


title: 4856076028_A


title: 4856076038_B


title: 4856076023_K


title: 4856076028_G


title: 4856076027_C


title: 4856076018_A


title: 4856076022_C


title: 4856076009_K


title: 4856076019_J


title: 4856076008_I


title: 4856076017_A


title: 4856076008_G


title: 4856076007_C


title: 4856076028_B


title: 4856050058_I


title: 4856076008_D


title: 4856050059_H


title: 4856050048_F


title: 4856076025_C


title: 4856050058_C


title: 4856050047_L


title: 4856076019_L


title: 4856076023_A


title: 4856076008_L


title: 4856050048_A


title: 4856076017_K


title: 4856076002_A


title: 4856050048_I


title: 4856050046_E


title: 4856050009_G


title: 4856050008_K


title: 4856050007_G


title: 4856050008_B


title: 4856076041_C


title: 4856076040_J


title: 4856076038_F


title: 4856076029_H


title: 4856076028_J


title: 4856076029_E


title: 4856076029_B


title: 4856076028_E


title: 4856076026_E


title: 4856076028_F


title: 4856076030_H


title: 4856050003_J


title: 4856076025_E


title: 4856076019_I


title: 4856076023_E


title: 4856076023_C


title: 4856076040_I


title: 4856076019_D


title: 4856076022_I


title: 4856076030_J


title: 4856076019_C


title: 4856076017_L


title: 4856076017_I


title: 4856076018_I


title: 4856076019_A


title: 4856076029_K


title: 4856076017_J


title: 4856076009_B


title: 4856076003_C


title: 4856076008_F


title: 4856076017_H


title: 4856076007_B


title: 4856076009_F


title: 4856076003_I


title: 4856050059_D


title: 4856076007_E


title: 4856076002_K


title: 4856050058_H


title: 4856050058_A


title: 4856050047_G


title: 4856050048_G


title: 4856050046_C


title: 4856076003_E


title: 4856050059_J


title: 4856050009_F


title: 4856050058_F


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title: 4856076009_D


title: 4856076002_E


title: 4856050047_D


title: 4856050008_I


title: 4856076040_G


title: y4

description: no additional information

hyb_protocol: Affymetrix Standard protocol.

scan_protocol: Affymetrix Standard protocol.

data_processing: The data was analyzed with the affy package from Bioconductor using the RMA algorithm.

source_name: resting skeletal muscle

label_protocol: Affymetrix Standard protocol.

growth_protocol: Not applicable

extract_protocol: TRIzol

tag: group

value: young

tag: aerobic fitness

value: male

value: skeletal muscle


title: y7

description: no additional information

tag: age


title: y11

description: no additional information


title: y1

description: no additional information


title: y8

description: no additional information


title: y10

description: no additional information


title: y12

description: no additional information


title: y3

description: no additional information


title: y15

description: no additional information


title: y2

description: no additional information


title: y14

description: no additional information


title: o3

description: no additional information

value: old


title: y9

description: no additional information


title: y13

description: no additional information


title: y6

description: no additional information


title: o1

description: no additional information


title: o4

description: no additional information


title: o13

description: no additional information


title: y5

description: no additional information


title: o12

description: no additional information


title: o14

description: no additional information


title: o2

description: no additional information


title: o6

description: no additional information


title: o11

description: no additional information


title: o8

description: no additional information


title: o7

description: no additional information


title: o10

description: no additional information


title: o5

description: no additional information


title: o15

description: no additional information


title: o9

description: no additional information


title: 411

description: pre-training

scan_protocol: Affymetrix Gene ChIP Scanner 3000 7G

label_protocol: Reverse transcription of RNA was carried out using the Affymetrix 3′ IVT express kit. 100 ng of total RNA was reverse transcribed as per manufacturer's protocol, and quantified using a Nanodrop ND-1000 instrument. aRNA was fragmented and labeled as per manufacturers protocol and hybridized to Affymetrix U133+2 arrays (Affymetrix, USA).

growth_protocol: not applicable

extract_protocol: Total RNA was isolated from muscle biopsies taken before training by chloroform-phenol based extraction. ~20 mg each were processed simultaneously in 1 mL TRIzol (Invitrogen) using a Mini-Beadbeater-8 (Biospec Inc.) for 15 sec on the “homogenize” setting. After 5 min of incubation at room temperature, 200 µL of chloroform (Sigma-Aldrich) was added and samples shaken vigorously by hand. Samples were briefly incubated on ice prior to centrifugation at 12,000 g for 15 min. The supernatant was removed and mixed with isopropanol (Sigma-Aldrich) and spun once more at 12,000 g for 10 min, after 10 min of incubation. After a single washing step with 75% EtOH RNA pellets were re-suspended in 40 µL DEPC-treated water (Ambion) and quantified using a NanoDrop Spectrophotometer (NanoDrop Technologies).

treatment_protocol: Pre-training samples prior to a fully supervised exercise programme

tag: patientid

tag: time

value: pre-training

value: skeletal muscle biopsy


title: 483

description: pre-training


title: 371

description: pre-training


title: 304

description: pre-training


title: 415

description: pre-training


title: 457

description: pre-training


title: 464

description: pre-training


title: 366

description: pre-training


title: 455

description: pre-training


title: 476

description: pre-training


title: 372

description: pre-training


title: 314

description: pre-training


title: 484

description: pre-training


title: 413

description: pre-training


title: 401

description: pre-training


title: 704

description: pre-training


title: 350

description: pre-training


title: 742

description: pre-training


title: 319

description: pre-training


title: 357

description: pre-training


title: 726

description: pre-training


title: 423

description: pre-training


title: 444

description: pre-training


title: 458

description: pre-training


title: 414

description: pre-training


title: 446

description: pre-training


title: 437

description: pre-training


title: 374

description: pre-training


title: 740

description: pre-training


title: 382

description: pre-training


title: 329

description: pre-training


title: 482

description: pre-training


title: 421

description: pre-training


title: 485

description: pre-training


title: 406

description: pre-training


title: 376

description: pre-training


title: 456

description: pre-training


title: 430

description: pre-training


title: 703

description: pre-training


title: 308

description: pre-training


title: 460

description: pre-training


title: 715

description: pre-training


title: 404

description: pre-training


title: 354

description: pre-training


title: 387

description: pre-training


title: 331

description: pre-training


title: 375

description: pre-training


title: 417

description: pre-training


title: 473

description: pre-training


title: 403

description: pre-training


title: 386

description: pre-training


title: 731

description: pre-training


title: 335

description: pre-training


title: 379

description: pre-training


title: 361

description: pre-training


title: 360

description: pre-training


title: 434

description: pre-training


title: 743

description: pre-training


title: 481

description: pre-training


title: 340

description: pre-training


title: 336

description: pre-training


title: 333

description: pre-training


title: 318

description: pre-training


title: 309

description: pre-training


title: 448

description: pre-training


title: 312

description: pre-training


title: 463

description: pre-training


title: 465

description: pre-training


title: 488

description: pre-training


title: 317

description: pre-training


title: 330

description: pre-training


title: 389

description: pre-training


title: 356

description: pre-training


title: 418

description: pre-training


title: 311

description: pre-training


title: 749

description: pre-training


title: 445

description: pre-training


title: 754

description: pre-training


title: 724

description: pre-training


title: 709

description: pre-training


title: 334

description: pre-training


title: 739

description: pre-training


title: 738

description: pre-training


title: 367

description: pre-training


title: 313

description: pre-training


title: 753

description: pre-training


title: 435

description: pre-training


title: 750

description: pre-training


title: 385

description: pre-training


title: 301

description: pre-training


title: 492

description: pre-training


title: 393

description: pre-training


title: 708

description: pre-training


title: 453

description: pre-training


title: 705

description: pre-training


title: 359

description: pre-training


title: 439

description: pre-training


title: 447

description: pre-training


title: 701

description: pre-training


title: 711

description: pre-training


title: 433

description: pre-training


title: 466

description: pre-training


title: 718

description: pre-training


title: 351

description: pre-training


title: 717

description: pre-training


title: 707

description: pre-training


title: 741

description: pre-training


title: 475

description: pre-training


title: 720

description: pre-training


title: HIC021

status: Public on Dec 11 2014

type: SRA

city: Houston

first: Suhas

last: Rao

state: TX

address: 1 Baylor Plaza

department: Molecular and Human Genetics

country: USA

institute: Baylor College of Medicine

library_source: genomic

data_processing:
library strategy: HiC-Seq
The paired end reads were aligned separately using BWA against the b37 human build or the mm9 mouse build
PCR duplicates, low mapping quality and unligated reads were removed using an in-house Hi-C analysis pipeline (see Rao, Huntley, et al)
Contact matrices were constructed at various resolutions and normalized using an in-house Hi-C analysis pipeline (see Rao, Huntley, et al)
loops were annotated using HiCCUPS (see Rao, Huntley, et al), domains were annotated using Arrowhead (see Rao, Huntley, et al), subcompartments were annotated using a Gaussian HMM (see Rao, Huntley, et al)
Genome_build: b37 (human), mm9 (mouse)
Supplementary_files_format_and_content: HiCCUPS_looplist.txt files contain loop calls generated via HiCCUPS; first three fields represent the locus participating in the loop closer to the p-end of the chromosome; fields 4-6 represent the locus participating in the loop closer to the q-end of the chromosome; field 7 represents the color used to display the feature in Juicebox (a Hi-C data visualization software, see www.aidenlab.org/juicebox); field 8 represents the observed number of counts at the loop; fields 9-12 represent the expected number of counts at the loop using four different expected models; fields 13-16 are the q-values over each of the expected values; field 17 is the number of enriched pixels that was clustered into a particular loop; field 18-19 are the centroid of the loop; field 20 is the radius of the loop
Supplementary_files_format_and_content: Arrowhead_domainlist.txt files contain domain calls generated via Arrowhead; first 6 fields represent the boundaries of the domain; field 7 represents the color used to display the feature in Juicebox (a Hi-C data visualization software, see www.aidenlab.org/juicebox); field 8 is the corner score for the domain (see Rao, Huntley, et al); fields 9-12 are the component scores used in the Arrowhead algorithm (see Rao, Huntley, et al)
Supplementary_files_format_and_content: the subcompartment bed file contains the coordinates of the 6 nuclear subcompartments identified in Rao, Huntley, et al.
Supplementary_files_format_and_content: HIC*_merged_nodups.txt files specify each Hi-C read pair (i.e., the mapping locations of each individual read pair).

molecule: genomic DNA

source_name: B-lymphoblastoids

growth_protocol: Cell lines were cultured according to manufacturer's instructions

extract_protocol:
Cells were crosslinked and then lysed with nuclei permeabilized but still intact. DNA was then restricted and the overhangs filled in incorporating a biotinylated base. Free ends were then ligated together in situ. Crosslinks were reversed, the DNA was sheared to 300-500bp and then biotinylated ligation junctions were recovered with streptavidin beads.
standard Illumina library construction protocol, Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3’ end. After adapter ligation DNA was PCR amplified with Illumina primers for 8-12 cycles and library fragments of 400-600 bp (insert plus adaptor and PCR primer sequences) were purified using SPRI beads. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the MiSeq/HiSeq2000/HiSeq2500 following the manufacturer's protocols

tag: cell line

tag: protocol

value: in situ Hi-C


title: HIC019

value: tethered in situ Hi-C


title: HIC023


title: HIC024


title: HIC025


title: HIC020


title: HIC027


title: 735

description: pre-training


title: 305

description: pre-training


title: 364

description: pre-training


title: HIC014


title: 706

description: pre-training


title: HIC015


title: 380

description: pre-training


title: HIC026


title: 384

description: pre-training


title: 339

description: pre-training


title: 486

description: pre-training


title: 316

description: pre-training


title: 352

description: pre-training


title: 491

description: pre-training


title: 410

description: pre-training


title: HIC022


title: 436

description: pre-training


title: 449

description: pre-training


title: 355

description: pre-training


title: 425

description: pre-training


title: HIC007


title: HIC002


title: HIC005


title: HIC017


title: HIC018


title: HIC001


title: HIC016


title: HIC012


title: HIC006


title: HIC003


title: HIC009


title: HIC029


title: HIC011


title: HIC028


title: HIC013


title: HIC010


title: HIC004


title: HIC008


title: SB063_pre-training

status: Public on Jun 12 2013

description:
pre-training
D41_SB063F

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.

extract_protocol: Total RNA was isolated from muscle biopsies taken before and after (72 h after the final training session) RET by chloroform-phenol based extraction. In brief, paired tissue samples (obtained before and after RET) of ~20 mg each were processed simultaneously in 1 mL TRIzol (Invitrogen) using a Mini-Beadbeater-8 (Biospec Inc.) for 15 sec on the “homogenize” setting. After 5 min of incubation at room temperature, 200 µL of chloroform (Sigma-Aldrich) was added and samples shaken vigorously by hand. Samples were briefly incubated on ice prior to centrifugation at 12,000 g for 15 min. The supernatant was removed and mixed with isopropanol (Sigma-Aldrich) and spun once more at 12,000 g for 10 min, after 10 min of incubation. After a single washing step with 75% EtOH RNA pellets were re-suspended in 40 µL DEPC-treated water (Ambion) and quantified using a NanoDrop Spectrophotometer (NanoDrop Technologies).

treatment_protocol: The 20-wk fully supervised RET programme was designed to achieve skeletal muscle hypertrophy. Subjects trained three times per week, with each session lasting approximately 60 min. During four weeks of induction training (to ensure adoption and adherence to correct technique) intensity was increased from 40% to 60% 1-RM. For the remaining 16-wk of training intensity was set at 70% 1-RM with multiple sets of 12 repetitions, with two min rest between sets. 1-repetition maximum (1-RM) assessments were made every four weeks to ensure that the intensity of loading was constant. Muscle biopsies (~150 mg) were taken under fasted-non-exercised (“basal”) and optimal growth conditions (acute exercise-fed conditions, 2.5 h after a single bout of exercise) both before and after chronic-RET from the vastus lateralis muscle under local anaesthesia


title: SJ079_post-training

description:
post-training
D20_SJ079L

value: post-training


title: SH041_post-training

description:
post-training
D84_SH041L


title: TW003_post-training

description:
post-training
D22_TW003L


title: SH041_pre-training

description:
pre-training
D83_SH041F


title: RG093_pre-training

description:
pre-training
D65_RG093F


title: TW003_pre-training

description:
pre-training
D21_TW003F


title: PK029_post-training

description:
post-training
D36_PK029L


title: RP012_post-training

description:
post-training
D76_RP012L


title: RN039_post-training

description:
post-training
D32_RN039L


title: SB063_post-training

description:
post-training
D42_SB063L


title: RN039_pre-training

description:
pre-training
D31_RN039F


title: SF065_post-training

description:
post-training
D40_SF065L


title: RB020_pre-training

description:
pre-training
D81_RB020F


title: PW031_post-training

description:
post-training
D72_PW031L


title: SJ079_pre-training

description:
pre-training
D19_SJ079F


title: RB020_post-training

description:
post-training
D82_RB020L


title: RG093_post-training

description:
post-training
D66_RG093L


title: SF065_pre-training

description:
pre-training
D39_SF065F


title: PG069_pre-training

description:
pre-training
D43_PG069F


title: PW031_pre-training

description:
pre-training
D71_PW031F


title: RP012_pre-training

description:
pre-training
D75_RP012F


title: MT008_post-training

description:
post-training
D12_MT008L


title: NB021_pre-training

description:
pre-training
D13_NB021F


title: PK029_pre-training

description:
pre-training
D35_PK029F


title: PC035_pre-training

description:
pre-training
D79_PC035F


title: PC035_post-training

description:
post-training
D80_PC035L


title: MJ022_post-training

description:
post-training
D88_MJ022L


title: PG069_post-training

description:
post-training
D44_PG069L


title: MT008_pre-training

description:
pre-training
D11_MT008F


title: MH061_post-training

description:
post-training
D58_MH061L


title: MH054_pre-training

description:
pre-training
D7_MH054F


title: MH054_post-training

description:
post-training
D8_MH054L


title: KA070_pre-training

description:
pre-training
D53_KA070F


title: MJ022_pre-training

description:
pre-training
D87_MJ022F


title: JC047_post-training

description:
post-training
D18_JC047L


title: JC047_pre-training

description:
pre-training
D17_JC047F


title: JH074_post-training

description:
post-training
D46_JH074L


title: JW087_post-training

description:
post-training
D92_JW087L


title: JB038_pre-training

description:
pre-training
D5_JB038F


title: MH061_pre-training

description:
pre-training
D57_MH061F


title: HA094_post-training

description:
post-training
D68_HA094L


title: LH091_post-training

description:
post-training
D74_LH091L


title: JG040_pre-training

description:
pre-training
D2_JG040F


title: KA070_post-training

description:
post-training
D54_KA070L


title: JB038_post-training

description:
post-training
D6_JB038L


title: JOH099_post-training

description:
post-training
D90_JOH099L


title: JH074_pre-training

description:
pre-training
D45_JH074F


title: JW087_pre-training

description:
pre-training
D91_JW087F


title: JG040_post-training

description:
post-training
D1_JG040L


title: JB044_pre-training

description:
pre-training
D51_JB044F


title: IM023_pre-training

description:
pre-training
D23_IM023F


title: JC064_pre-training

description:
pre-training
D77_JC064F


title: IM023_post-training

description:
post-training
D24_IM023L


title: JA071_pre-training

description:
pre-training
D69_JA071F


title: JC064_post-training

description:
post-training
D78_JC064L


title: JA071_post-training

description:
post-training
D70_JA071L


title: JB044_post-training

description:
post-training
D52_JB044L


title: LH091_pre-training

description:
pre-training
D73_LH091F


title: HA094_pre-training

description:
pre-training
D67_HA094F


title: JOH099_pre-training

description:
pre-training
D89_JOH099F


title: GS075_pre-training

description:
pre-training
D59_GS075F


title: GJ095_post-training

description:
post-training
D62_GJ095L


title: DW097_post-training

description:
post-training
D34_DW097L


title: ED049_pre-training

description:
pre-training
D85_ED049F


title: GJ095_pre-training

description:
pre-training
D61_GJ095F


title: GS075_post-training

description:
post-training
D60_GS075L


title: ED049_post-training

description:
post-training
D86_ED049L


title: DT067_post-training

description:
post-training
D50_DT067L


title: DW097_pre-training

description:
pre-training
D33_DW097F


title: EH014_post-training

description:
post-training
D26_EH014L


title: CS066_pre-training

description:
pre-training
D29_CS066F


title: CR053_post-training

description:
post-training
D10_CR053L


title: CS066_post-training

description:
post-training
D30_CS066L


title: CP068_post-training

description:
post-training
D56_CP068L


title: DT067_pre-training

description:
pre-training
D49_DT067F


title: CP068_pre-training

description:
pre-training
D55_CP068F


title: CL046_post-training

description:
post-training
D38_CL046L


title: CR053_pre-training

description:
pre-training
D9_CR053F


title: AS060_pre-training

description:
pre-training
D47_AS060F


title: CL046_pre-training

description:
pre-training
D37_CL046F


title: CF093_pre-training

description:
pre-training
D27_CF093F


title: AC033_post-training

description:
post-training
D16_AC033L


title: AS060_post-training

description:
post-training
D48_AS060L


title: AC033_pre-training

description:
pre-training
D15_AC033F


title: BH073_pre-training

description:
pre-training
D4_BH073F


title: EH014_pre-training

description:
pre-training
D25_EH014F


title: CF093_post-training

description:
post-training
D28_CF093L


title: BH073_post-training

description:
post-training
D3_BH073L


title: 51764Pre

description:
gene expression prior to exercise training
HER_93_51764Pre

extract_protocol: Paired tissue samples (obtained before and after exercise training) of ~20 mg each were processed simultaneously in 1 mL TRIzol (Invitrogen) using a Mini-Beadbeater-8 (Biospec Inc.) for 15 sec on the homogenize setting. After 5 min of incubation at room temperature, 200 µL of chloroform (Sigma-Aldrich) was added and samples shaken vigorously by hand. Samples were briefly incubated on ice prior to centrifugation at 12,000 g for 15 min. The supernatant was removed and mixed with isopropanol (Sigma-Aldrich) and spun once more at 12,000 g for 10 min, after 10 min of incubation. After a single washing step with 75% EtOH RNA pellets were re-suspended in 40 µL DEPC-treated water (Ambion) and quantified using a NanoDrop Spectrophotometer (NanoDrop Technologies).

tag: subject

value: prior to exercise training


title: 51761Pre

description:
gene expression prior to exercise training
HER_89_51761Pre


title: 51746Pre

description:
gene expression prior to exercise training
HER_108_51746Pre


title: 51685Pre

description:
gene expression prior to exercise training
HER_83_51685Pre


title: 51762Pre

description:
gene expression prior to exercise training
HER_91_51762Pre


title: 51576Pre

description:
gene expression prior to exercise training
HER_104_51576Pre


title: 51573Pre

description:
gene expression prior to exercise training
HER_99_51573Pre


title: 51725Pre

description:
gene expression prior to exercise training
HER_110_51725Pre


title: 51765Pre

description:
gene expression prior to exercise training
HER_95_51765Pre


title: 51684Pre

description:
gene expression prior to exercise training
HER_81_51684Pre


title: 51483Pre

description:
gene expression prior to exercise training
HER_66_51483Pre


title: 51575Pre

description:
gene expression prior to exercise training
HER_103_51575Pre


title: 51686Pre

description:
gene expression prior to exercise training
HER_85_51686Pre


title: 51571Pre

description:
gene expression prior to exercise training
HER_97_51571Pre


title: 51745Pre

description:
gene expression prior to exercise training
HER_106_51745Pre


title: 51465Pre

description:
gene expression prior to exercise training
HER_62_51465Pre


title: 51463Pre

description:
gene expression prior to exercise training
HER_60_51463Pre


title: 51545Pre

description:
gene expression prior to exercise training
HER_75_51545Pre


title: 51721Pre

description:
gene expression prior to exercise training
HER_87_51721Pre


title: 51484Pre

description:
gene expression prior to exercise training
HER_68_51484Pre


title: 51574Pre

description:
gene expression prior to exercise training
HER_101_51574Pre


title: 51681Pre

description:
gene expression prior to exercise training
HER_79_51681Pre


title: 51244Pre

description:
gene expression prior to exercise training
HER_56_51244Pre


title: 51242Pre

description:
gene expression prior to exercise training
HER_53_51242Pre


title: 51243Pre

description:
gene expression prior to exercise training
HER_55_51243Pre


title: 51241Pre

description:
gene expression prior to exercise training
HER_51_51241Pre


title: 51223Pre

description:
gene expression prior to exercise training
HER_45_51223Pre


title: 51221Pre

description:
gene expression prior to exercise training
HER_41_51221Pre


title: 51222Pre

description:
gene expression prior to exercise training
HER_43_51222Pre


title: 50953Pre

description:
gene expression prior to exercise training
HER_32_50953Pre


title: 50966Pre

description:
gene expression prior to exercise training
HER_29_50966Pre


title: 50954Pre

description:
gene expression prior to exercise training
HER_34_50954Pre


title: 51464Pre

description:
gene expression prior to exercise training
HER_49_51464Pre


title: 51461Pre

description:
gene expression prior to exercise training
HER_47_51461Pre


title: 51201Pre

description:
gene expression prior to exercise training
HER_38_51201Pre


title: 51204Pre

description:
gene expression prior to exercise training
HER_40_51204Pre


title: 50955Pre

description:
gene expression prior to exercise training
HER_36_50955Pre


title: 50963Pre

description:
gene expression prior to exercise training
HER_26_50963Pre


title: 50905Pre

description:
gene expression prior to exercise training
HER_14_50905Pre


title: 50904Pre

description:
gene expression prior to exercise training
HER_12_50904Pre


title: 50926Pre

description:
gene expression prior to exercise training
HER_22_50926Pre


title: 50925Pre

description:
gene expression prior to exercise training
HER_20_50925Pre


title: 50673Pre

description:
gene expression prior to exercise training
HER_3_50673Pre


title: 50672Pre

description:
gene expression prior to exercise training
HER_1_50672Pre


title: 50961Pre

description:
gene expression prior to exercise training
HER_24_50961Pre


title: 50921Pre

description:
gene expression prior to exercise training
HER_16_50921Pre


title: 50902Pre

description:
gene expression prior to exercise training
HER_10_50902Pre


title: 50704Pre

description:
gene expression prior to exercise training
HER_8_50704Pre


title: 50924Pre

description:
gene expression prior to exercise training
HER_18_50924Pre


title: 50702Pre

description:
gene expression prior to exercise training
HER_7_50702Pre


title: 50701Pre

description:
gene expression prior to exercise training
HER_5_50701Pre


title: 50903Pre

description:
gene expression prior to exercise training
HER_30_50903Pre


title: baseline sample Grp1_p46

status: Public on Feb 10 2012

scan_protocol: Affymetrix Standard protocol

data_processing: All array data were normalized using the Microarray Suite version 5.0 (MAS 5.0) algorithm to a global scaling intensity of 100. Data were filtered using present/absent calls. Probes called absent by MAS 5.0 across all arrays were discarded

source_name: Resting human skeletal muscle after endurance training

label_protocol: Affymetrix Standard protocol

growth_protocol: skeletal muscle post 6 weeks of endurance exercise training

extract_protocol: Muscle was homogenised in Trizol with Polytron motor driven homogeniser and RNA extraction carried out using Trizol protocol (Invitrogen). Hybridization, washing, staining and scanning of the arrays were performed according to manufacturer’s instructions (Affymetrix)

value: Resting skeletal muscle sample after to endurance training

tag: heart rate (bpm)

tag: vo2 (l/min)

tag: rer

tag: ve (l/min)

tag: duration (mins)

tag: max work (watts)

tag: end borg

tag: end hr (bpm)

tag: vo2 end (l/min)

tag: body mass

tag: vo2max per kg

tag: rer end

tag: ve end (l/min)

tag: rr end (breaths/min)


title: baseline sample Grp1_p44

tag: gender


title: baseline sample Grp1_p48

tag: protocol


title: baseline sample Grp1_p34


title: baseline sample Grp1_p26


title: baseline sample Grp1_p20


title: baseline sample Grp1_p36


title: baseline sample Grp1_p22


title: baseline sample Grp1_p40


title: baseline sample Grp1_p24


title: baseline sample Grp1_p28


title: baseline sample Grp1_p38


title: baseline sample Grp1_p18


title: baseline sample Grp1_p30


title: baseline sample Grp1_p42


title: baseline sample Grp1_p32


title: baseline sample Grp1_p14


title: baseline sample Grp1_p10


title: baseline sample Grp1_p16


title: baseline sample Grp2_22614

status: Public on Feb 04 2010

description: no additional information

data_processing: MAS5 Custom CDF from Michigan Brain Group version 10 (all absent calls removed)

value: Resting skeletal muscle sample prior to endurance training


title: baseline sample Grp2_22821

description: no additional information


title: baseline sample Grp2_22847

description: no additional information


title: baseline sample Grp2_20951

description: no additional information


title: baseline sample Grp2_22640

description: no additional information


title: baseline sample Grp1_p2


title: baseline sample Grp1_p6


title: baseline sample Grp1_p4


title: baseline sample Grp2_20615

description: no additional information


title: baseline sample Grp2_20821

description: no additional information


title: baseline sample Grp1_p47

description: no additional information


title: baseline sample Grp1_p45

description: no additional information


title: baseline sample Grp2_22666

description: no additional information


title: baseline sample Grp2_22354

description: no additional information


title: baseline sample Grp2_20667

description: no additional information


title: baseline sample Grp1_p12


title: baseline sample Grp2_25082

description: no additional information


title: baseline sample Grp2_22432

description: no additional information


title: baseline sample Grp1_p8


title: baseline sample Grp2_22954

description: no additional information


title: baseline sample Grp2_22692

description: no additional information


title: baseline sample Grp1_p39

description: no additional information


title: baseline sample Grp1_p41

description: no additional information


title: baseline sample Grp2_22744

description: no additional information


title: baseline sample Grp2_20899

description: no additional information


title: baseline sample Grp1_p33

description: no additional information


title: baseline sample Grp1_p43

description: no additional information


title: baseline sample Grp1_p37

description: no additional information


title: baseline sample Grp1_p21

description: no additional information


title: baseline sample Grp1_p27

description: no additional information


title: baseline sample Grp1_p25

description: no additional information


title: baseline sample Grp2_22536

description: no additional information


title: baseline sample Grp1_p35

description: no additional information


title: baseline sample Grp1_p7

description: no additional information


title: baseline sample Grp1_p9

description: no additional information


title: baseline sample Grp1_p11

description: no additional information


title: baseline sample Grp1_p31

description: no additional information


title: baseline sample Grp1_p5

description: no additional information


title: Electroporation 3

status: Public on Sep 11 2009

hyb_protocol: standard Affymetrix protocol

scan_protocol: standard Affymetrix protocol

data_processing: MAS 5

source_name: electroporation

label_protocol: standard Affymetrix protocol

extract_protocol: standard Affymetrix protocol

tag: strain

tag: tissue

value: skin


title: baseline sample Grp1_p1

description: no additional information

tag: heart rate (bpm)

tag: vo2 (l/min)


title: baseline sample Grp1_p29

description: no additional information

tag: rer

tag: ve (l/min)


title: Control 2

source_name: untreated control


title: baseline sample Grp1_p23

description: no additional information

tag: duration (mins)

tag: max work (watts)


title: baseline sample Grp1_p19

description: no additional information

tag: end borg

tag: end hr (bpm)


title: baseline sample Grp1_p17

description: no additional information

tag: vo2 end (l/min)

tag: body mass


title: baseline sample Grp1_p15

description: no additional information

tag: vo2max per kg

tag: rer end


title: baseline sample Grp1_p13

description: no additional information

tag: ve end (l/min)

tag: rr end (breaths/min)


title: baseline sample Grp1_p3

description: no additional information

tag: gender

tag: protocol


title: Electroporation 1

tag: strain

tag: tissue


title: Electroporation 2


title: Control 4


title: Control 1


title: Control 3