title: SVZ_Glast_G9_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: snf6Δ, rep2

status: Public on Jun 11 2024

type: SRA

city: Shenzhen

first: Changbin

last: Sun

address: Dapeng

department: Agricultural Genomics Institute at Shenzhen

country: China

institute: Chinese Academy of Agricultural Sciences

library_source: transcriptomic

data_processing:
Basecalls were performed using bcl2fastq v2.17 for Novaseq output.
Raw reads with low quality and adaptor contamination were trimmed, and short reads less than 50 pb were filtered by Trim Galore (version 0.6.7)
After trimmingl, clean reads were aligned to the sacCer3 genome by using Bowtie 2 (version 2.2.5) with default parameters.
Raw counts for the feature of genes were extracted by featureCounts (version 2.0.3).
Assembly: sacCer3
Supplementary files format and content: tab-delimited text files include raw counts for each Sample

molecule: polyA RNA

organism: Saccharomyces cerevisiae

extract_protocol:
2 ml mid-log-phase cells were collected by centrifugation and resuspended in 400 µl TE solution. Add 400 µl acid phenol (CHCl3) to the cells and vortexed vigorously for 10 s. Incubate for 60 min at 65°C, vortexing every 15 min. Then,  place on ice for 5 min and spin at 16,000 × g for 10 min at 4°C. Transfer the supernatant to a new tube , add 400 µl CHCl3 and vortex vigorously for 10 s, and then spin at 16,000 × g for 10 min at 4°C. Transfer the supernatant to a new tube, add a 1/10 volume of 3 M NaAc, pH 5.2, and 2.5 volumes EtOH. Put the tube at  -80°C for 60 min and centrifugate at 16,000 × g for 10 min at 4°C. Wash the pellet twice with 80% EtOH and dry by air. DNase I treatment was performed at 37°C to remove potential gDNA contamination.
cDNA  were synthesized by ProtoScript® II Reverse Transcriptase with d(T)23VN primer according to the manufacturer’s manual. Synthesized cDNA hybrids were sonicated to 250 bp using ME220 (Covaris, 70 W, 20% Duty factor, 1000 cycles per burst, 130 s, at 4 – 20°C). Denaturation was performed by heating at 95°C for 2 minutes followed by immediately cooling on ice for 2 minutes. Then,the tailing and single-strand ligation method was used for library preparation used as mDRIP-seq Input library construction.

tag: cell line

tag: genotype

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 snf6{delta}


title: snf6Δ, rep1


title: P7,Pos,KB0010,J3

city: St. Louis

first: Kia

middle: Marie

last: Barclay

email: kbarclay@wustl.edu, qingyunli@wustl.edu

state: MO

address: 4370 Duncan Ave

department: Neuroscience

country: USA

institute: Washington University in St. Louis

data_processing:
Prinseq (version 0.20.4) was first used to filter sequencing reads shorter than 30 bp (-min_len 30), trim the first 10 bp at the 5’-end (-trim_left 10) of the reads, trim reads with low quality from the 3’-end (-trim_qual_right 25) and remove low complexity reads (-lc_method entropy, -lc_threshold 65).
Trim Galore (version 0.4.3) was applied to trimmed the Nextera adapters (--stringency 1).
The remaining reads were aligned to the mm10 genome by calling STAR (version 2.5.3a) with the following options: --outFilterType BySJout, --outFilterMultimapNmax 20, --alignSJoverhangMin 8, --alignSJDBoverhangMin 1, --outFilterMismatchNmax 999, --outFilterMismatchNoverLmax 0.04, --alignIntronMin 20, --alignIntronMax 1000000, --alignMatesGapMax 1000000, --outSAMstrandField intronMotif.
Picard was then used to remove the duplicate reads (VALIDATION_STRINGENCY=LENIENT, REMOVE_DUPLICATES=true).
The aligned reads were converted to counts for each gene by using HTSeq (-m intersection-nonempty, -s no)
Assembly: mm10
Supplementary files format and content: Common delimited file (csv) containing all 2634 cells and mapped gene counts

molecule: total RNA

organism: Mus musculus

source_name: Corpus Callosum and Cerebellum

extract_protocol:
Microglia (myeloid cells) extraction was carried out on ice following a published protocol (Bennett et al. PNAS. 2016) through douncing, MACS myelin removal and FACS staining. Single live cells in the CD45lowCD11b+ (microglia) gate were sorted into 96-well plates for library preparation.
Sorted microglia plates were prepared for scRNA-sequencing following the previously published Smart-seq2 protocol (Zhou et al 2019). Plates were thawed and primer annealing was performed at 72°C for 3 minutes.  Reverse transcription was performed by adding 6uL of reverse transcription mixture (95U SMARTScribe Reverse Transcriptase (100U/uL, Clontech 639538), 10U RNase inhibitor (40U/uL), 1XFirst-Strand buffer, 5mM DTT, 1M Betaine, 6mM MgCl2, 1uM TSO (Rnase free HPLC purified) to each well (PCR protocol - at 42°C for 90 min, followed by 70°C, 5 min). DNA preamplification was done by adding 15 uL of PCR amplification mix (1X KAPA HIFI Hotstart Master Mix (Kapa Biosciences KK2602), 0.1uM ISPCR Oligo (AAGCAGTGGTATCAACGCAGAGT), 0.56U Lambda Exonuclease (5U/uL, New England BioLabs M0262S) to each well (PCR protocol - (1) 37°C 30 min; (2)95°C 3 min; (3) 23 cycles of 98°C 20 s, 67°C 15 s, 72°C 4 min; (4) 72°C 5 min). cDNA was cleaned using PCRClean DX beads (0.7:1 ratio, Aline C-1003-50) and resuspended in 20uL EB buffer. Nextera XT DNA Sample Prep Kit (Illumina FC-131-1096) was used at 1/10 of recommendation volume, with the help of a Mosquito HTS robot for liquid transfer. Specifically, tagmentation was done in 1.6uL (1.2uL Tagment enzyme mix, 0.4uL cDNA) at 55°C, 10 min. To stop the reaction, neutralization buffer was added 0.4uL per well and incubated at room temperature for 5 min. Then 0.8uL Illumina 10-bp dual indexes (0.4uL each, 5uM) and 1.2uL PCR master mix were added to amplify whole transcriptomes using the following program: (1) 72°C 3 min; (2) 95°C 30 s; (3) 10 cycles of 95°C 10 s, 55°C 30 s, 72°C 1 min; (4) 72°C 5 min. Libraries from a single 384 plate were pooled together in an Eppendorf tube and purified twice with PCRClean DX beads. The quality and concentrations of the final mixed libraries were measured with Bioanalyzer and Qubit, respectively, before Illumina Nova sequencing. To maximize PCR amplification efficiency for cuprizone demyelination samples, biotinylated-oligo-dT30VN oligo and biotinylated-TSO oligo were used in place of Oligo-dT30VN and TSO respectively, as described in an enhanced Smart-seq2 protocol (Gardeux et al 2022).

tag: tissue

value: Corpus Callosum and Cerebellum

value: Isolated Microglia

tag: cell type

value: Early Postnatal Homeostatic

tag: condition

tag: age

tag: tdtom

value: Pos


title: RCS_2KO_SCR_3

city: Pozzuoli

first: Rossella

last: De Cegli

address: Via Campi Flegrei 34

country: Italy

institute: Tigem

description: Transcriptome profile of RCS TFEB/3 DKO , biological rep3

data_processing:
Illumina NovaSeq 6000 base call (BCL) files were converted in fastq file through bcl2fastq; Trimming and cleaning with bbduk;Alignment was performed with STAR 2.6.0a The expression levels of genes were determined with HTseq-counts 0.9.1
Assembly: rn6
Supplementary files format and content: tab-delimited text files include raw counts for each Sample

organism: Rattus norvegicus

source_name: Rat chondrosarcoma TFEB/3DKO cells scramble

growth_protocol: Cells were cultured in DMEM 10% FBS and 1% P/S at 37°C in 5% CO2.

extract_protocol:
Cells were harvested for RNA extraction using RNAeasy Mini Kit (Qiagen) accorging to manifacturer's instuctions. RNA extracted from MOCK cells was used as a control. RNA extracted was quantified and mixed at 50 ng/ul.
NEGEDIA Digital mRNA-seq research grade sequencing service (Next Generation Diagnostic srl)

treatment_protocol: Cells were reverse-transfected with mCHERRY-COL2R789C plasmid using Lipofectamine LTX and Plus reagent (Invitrogen) accorging to manifacturer's instuctions.

value: chondrocytes, bone derived cell line

tag: gender

value: unknown


title: P7,Pos,KB0010,P3

value: Divding


title: SVZ_Glast_G8_isch pJ [scNOME-seq]

city: Heidelberg

first: Ana

last: Martin-Villalba

address: Im Neuenheimer Feld 280

department: Molecular Neurobiology

country: Germany

institute: German Cancer Research Center

description:
single-cell NOMe-seq
meth_mfrac_promoter.csv.gz
meth_shrunkResid_promoter.csv.gz
meth_mfrac_VMR.csv.gz
meth_shrunkResid_VMR.csv.gz
meth_coverage_VMR.csv.gz
acc_mfrac_promoter.csv.gz
acc_shrunkResid_promoter.csv.gz
acc_mfrac_VMR.csv.gz
acc_shrunkResid_VMR.csv.gz

library_source: genomic

data_processing:
read trimming and adapter removal
Bisulfite-aware read mapping
quantification of CpG and GpC methylation
Assembly: GRCm38 (mm10)
Supplementary files format and content: .csv.gz files: cell x region methylation matrices in gzip-compressed csv (comma-separated values) format. acc: chromatin accessibility (=GpC methylation). meth: DNA (=CpG) methylation. VMR: variably methylated regions identified with the ‘MethSCAn’ software. mfrac: fraction of methylated sites. shrunkResid: shrunken mean of residuals quantified with ‘MethSCAn’.
Supplementary files format and content: .cov.gz files: gzip-compressed tab-separated files produced by Bismark with the following columns: chromosome, start position, end position, methylation percentage, number of methylated cytosines, number of unmethylated cytosines.
Library strategy: Single-cell NOMe-seq

molecule: genomic DNA

source_name: striatum & ventricular-subventricular zone

extract_protocol:
For the ischemia experiment, the vSVZ and striatum were isolated. For the naïve experiments, vSVZ, striatum, and olfactory bulb were isolated. Depending on the plate, individual or pooled mice were used to sort cells on plate. Tissues were processed and sorted in a BD FACSAria II at the DKFZ Flow Cytometry Facility. Cells were stained with the following antibodies (all conditions and tissues together): O4-APC and O4-APC-Vio770 (Miltenyi; diluted 1:50), Ter119-APC-Cy7 (Biolegend; 1:100), CD45-APC-Cy7 (BD; 1:200), GLAST (ACSA-1)-PE (Miltenyi: 1:20), PSA-NCAM-PE-Vio770 (Miltenyi; 1:75), Prominin1-A488 (eBioscience; 1:75), and Sytox Blue (Life Technologies, 1:1000), CD9-eFluo450 (eBioscience, 1:300).
For profiling the transcriptome and epigenome of single cells we developed and implemented a miniaturized and higher throughput version of the scNMT-seq protocol (Clark et al., 2018). On this new version, the Smart-seq3 (Hagemann-Jensen et al., 2020) method and specific normalization steps were implemented. A detailed version of the protocol is described in Cerrizuela et al., (2022).The samples listed here represent the epigenomic portion of this multi-omic data set, i.e. DNA methylation and chromatin accessibility assessed with single-cell NOMe-seq.

treatment_protocol: Two months old TiCY mice were intraperitoneally injected with tamoxifen. In these mice, tamoxifen-induced Cre recombination takes place in neural stem cells in the vSVZ, which express Tlx (Nr2e1) and will stably activate the production of enhanced YFP, labeling NSCs and their progeny. Two weeks after injection, an injury by bilateral carotid artery occlusion (BCCAO) was performed as described (Llorens-Bobadilla et al., 2015). The animals were sacrificed for single cell sorting either 48 h or 3 weeks after ischemia. WT mice were not subjected to tamoxifen or ischemia.

value: neuroblast

value: TiCY-IFN(A/G)R KO

tag: treatment


title: P7,Pos,KB0012,F24

value: PAM


title: P7,Pos,KB0011,E24


title: SVZ_Glast_G6_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,Pos,KB0011,O24


title: P7,Pos,KB0012,N24


title: P7,Pos,KB0011,A24


title: SVZ_Glast_G5_isch pJ [scNOME-seq]


title: snf5Δ, rep1

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 snf5{delta}


title: P7,Pos,KB0012,D24


title: SVZ_Glast_G1_isch pJ [scNOME-seq]

value: vSVZ astrocyte


title: P7,Pos,KB0012,B24

value: Adult Spinal Cord Homeostatic


title: SVZ_Glast_G18_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,L24


title: P7,Pos,KB0011,G24


title: P7,Pos,KB0011,I24


title: P7,Pos,KB0012,P24


title: SVZ_Glast_G17_isch pJ [scNOME-seq]


title: P7,Pos,KB0011,C24


title: rad51Δ, rep2

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 rad51{delta}


title: P7,Pos,KB0012,H14


title: nam7Δ, rep2

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 nam7{delta}


title: SVZ_Glast_G16_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: SVZ_Glast_G14_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,F14

value: Corpus Callosum and Cerebellum


title: P7,Pos,KB0012,N14

value: Isolated Microglia


title: P7,Pos,KB0012,D14


title: SVZ_Glast_G15_isch pJ [scNOME-seq]


title: rad51Δ, rep1


title: snf5Δ, rep2


title: SVZ_Glast_G13_isch pJ [scNOME-seq]


title: nam7Δ, rep1


title: P7,Pos,KB0011,A14


title: P7,Pos,KB0012,B14

value: DAM 1


title: P7,Pos,KB0011,E14

value: Early Postnatal Homeostatic

value: Pos


title: med1Δ, rep2

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 med1{delta}


title: SVZ_Glast_G12_isch pJ [scNOME-seq]


title: snf2Δ, rep2

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 snf2{delta}


title: P7,Pos,KB0011,M14


title: P7,Pos,KB0011,I14


title: P7,Pos,KB0011,G14


title: SVZ_Glast_G11_isch pJ [scNOME-seq]

value: neuroblast


title: snf2Δ, rep1


title: P7,Pos,KB0011,C14


title: dhh1Δ, rep2

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 dhh1{delta}


title: P7,Pos,KB0011,K14

value: PAM


title: SVZ_Glast_G10_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY-IFN(A/G)R KO


title: P7,Pos,KB0012,J14


title: dhh1Δ, rep1


title: P7,Pos,KB0012,P14


title: SVZ_Glast_F9_isch pJ [scNOME-seq]


title: med1Δ, rep1


title: P7,Pos,KB0012,F15


title: SVZ_Glast_F8_isch pJ [scNOME-seq]


title: def1Δ, rep3

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1 def1{delta}


title: P7,Pos,KB0012,H15


title: P7,Pos,KB0011,E15

value: Divding


title: P7,Pos,KB0012,N15


title: def1Δ, rep2


title: SVZ_Glast_F6_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,D15


title: SVZ_Glast_F5_isch pJ [scNOME-seq]


title: P7,Pos,KB0011,M15


title: P7,Pos,KB0011,A15


title: P7,Pos,KB0012,B15


title: BY4741, rep3

value: MATa his3{delta}1 leu2{delta}0 met15{delta}0 ura3{delta}1


title: def1Δ, rep1


title: P7,Pos,KB0012,L15


title: SVZ_Glast_F4_isch pJ [scNOME-seq]

value: reactive astrocyte


title: P7,Pos,KB0011,G15


title: SVZ_Glast_F1_isch pJ [scNOME-seq]

value: vSVZ astrocyte

value: 2 days post ischemia


title: BY4741, rep2


title: P7,Pos,KB0011,I15

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P7,Pos,KB0011,C15


title: P7,Pos,KB0011,K15


title: P7,Pos,KB0012,J15


title: P6-mDRIP-seq-snf6Δ-Input-R2

data_processing:
Basecalls were performed using bcl2fastq v2.17 for Novaseq output.
Raw reads with low quality and adaptor contamination were trimmed, and short reads less than 50 pb were filtered by Trim Galore (version 0.6.7).
After trimming, clean reads were aligned to the genomes (BW25113 genome for E. coli, sacCer3 genome for yeast, GRCh38 genome for humans, mm10 genome for mice, TAIR10 genome for Arabidopsis, MSU version 7.0 for rice) with Bowtie 2 (version 2.2.5) using local alignment mode.
Assembly: sacCer3 genome for yeast
Supplementary files format and content: bigWig
Library strategy: mDRIP-seq

extract_protocol:
For mammal and E. coli genomic DNA extraction, cells were lysed by 0.5% SDS and digested with 0.1mg/mL proteinase K (TransGen Biotech#: GE201-01) at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method. For Arabidopsis and rice gDNA extraction, seedlings were grounded in liquid nitrogen and then lysed by 0.5% SDS and digested with 0.1 mg/mL proteinase K (TransGen Biotech#: GE201-01) at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method. For yeast gDNA extraction, cells were resuspended in TE buffer with 0.5% NP40 and equal volume glass beads (Sigma#: G8772), and beat 6 times in 30 sec at 60 Hz with 1 min pausing at 4°C to destroy cell walls. Then cells were collected, lysed by 0.5% SDS and digested with 0.1mg/mL proteinase K at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method.
For cDNA hybrids synthesis, total RNA was extracted according to the manual of TRIzol™ (ThermoFisher Scientific#:15596026) from the manufacturer. DNase I (ThermoFisher Scientific#: EN0521) treatment was performed at 37°C to remove potential gDNA contamination. cDNA hybrids were synthesized by ProtoScript® II Reverse Transcriptase with d(T)23VN primer according to the manufacturer’s manual. Then, cDNA hybrids were incubated with MBN at 30°C for 30 min to remove remaining primers and RNA while only production with DNA:RNA hybrid form can be retained.
Nucleic acid was digested with MBN at 30°C for 1 hour and purified using the phenol-chloroform nucleic acid extraction method followed by resuspending the pellet in 130 μl TE buffer. Sonication with Covaris™ ME220 (Covaris, 70 W, 20% Duty factor, 1000 cycles per burst, 130 s, at 4–20°C) was performed to fragment nucleic acid with peak size around 250 bp and quantified by Qubit™ dsDNA HS Assay Kit (ThermoFisher Scientific#:Q32851). For multiple samples that would be used as a pool for DRIP, sonicated DNA was diluted to the needed concentration and barcoded in DNA:RNA hybrids tailing and ligation reaction for each sample as above mentioned at 37°C for 1 hour with barcode adaptors (Table S2) followed by adding 2 μL 0.5 M EDTA to stop the reaction. Then, these barcoded samples were pooled together and purified using the phenol-chloroform nucleic acid extraction method. The purified nucleic acid pellet was resuspended in TE buffer followed by DRIP and library construction for sequencing as described in ssDRIP-seq.

tag: strain

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>238 snf6<delta>


title: SVZ_Glast_F17_isch pJ [scNOME-seq]

value: aNSC


title: P7,Neg,KB0015,M12

value: Neg


title: P6-mDRIP-seq-snf6Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>237 snf6<delta>


title: SVZ_Glast_F16_isch pJ [scNOME-seq]


title: SVZ_Glast_F14_isch pJ [scNOME-seq]


title: P7,Neg,KB0015,K12

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,G12


title: P6-mDRIP-seq-snf5Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>235 snf5<delta>


title: P7,Neg,KB0015,O6


title: SVZ_Glast_F13_isch pJ [scNOME-seq]

value: neuroblast


title: P7,Neg,KB0015,M6


title: SVZ_Glast_F12_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: BY4741, rep1


title: P7,Neg,KB0015,G6


title: P6-mDRIP-seq-snf2Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>233 snf2<delta>


title: P7,Neg,KB0015,K6


title: SVZ_Glast_F11_isch pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P6-mDRIP-seq-snf2Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>234 snf2<delta>


title: SVZ_Glast_F18_isch pJ [scNOME-seq]


title: SVZ_Glast_F10_isch pJ [scNOME-seq]


title: P6-mDRIP-seq-rad51-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>232 rad51


title: P7,Neg,KB0015,O12

value: PAM


title: P7,Pos,KB0012,N13

value: Pos


title: P7,Pos,KB0011,G13


title: P7,Pos,KB0011,M13


title: P6-mDRIP-seq-snf5Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>236 snf5<delta>


title: SVZ_Glast_E9_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,Pos,KB0012,L13

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P7,Neg,KB0015,I12

value: Divding


title: P6-mDRIP-seq-nam7Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>230 nam7<delta>


title: P7,Pos,KB0011,I13

value: Adult Spinal Cord Homeostatic


title: SVZ_Glast_E8_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,B13


title: P7,Pos,KB0011,K13


title: P7,Pos,KB0011,E13


title: P6-mDRIP-seq-nam7Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>229 nam7<delta>


title: P7,Pos,KB0012,P13


title: SVZ_Glast_E6_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,H16

value: Early Postnatal Homeostatic


title: P7,Pos,KB0012,N16


title: P6-mDRIP-seq-med1Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>227 med1<delta>


title: SVZ_Glast_E18_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: neuroblast


title: P6-mDRIP-seq-dhh1Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>226 dhh1<delta>


title: P7,Pos,KB0012,D16


title: SVZ_Glast_E4_isch pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P6-mDRIP-seq-rad51-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>231 rad51


title: P7,Pos,KB0012,B16


title: P7,Pos,KB0011,M16

value: PAM


title: P7,Pos,KB0012,L16

value: Pos


title: P6-mDRIP-seq-dhh1Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>225 dhh1<delta>


title: P7,Pos,KB0011,G16


title: P7,Pos,KB0012,J16


title: P6-mDRIP-seq-def1Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>224 def1<delta>


title: P7,Neg,KB0015,O7

value: Corpus Callosum and Cerebellum

value: Neg


title: P6-mDRIP-seq-def1Δ-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>223 def1<delta>


title: SVZ_Glast_E14_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,Pos,KB0011,E16

value: Isolated Microglia


title: SVZ_Glast_E15_isch pJ [scNOME-seq]

value: vSVZ astrocyte


title: P7,Pos,KB0011,O16

value: Early Postnatal Homeostatic


title: P6-mDRIP-seq-med1Δ-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>228 med1<delta>


title: P7,Neg,KB0015,K7


title: P6-mDRIP-seq-BY4741-Input-R4

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>222


title: P7,Neg,KB0015,C5

value: Adult Brain Homeostatic


title: SVZ_Glast_E13_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: reactive astrocyte


title: P7,Neg,KB0015,M7


title: P7,Neg,KB0015,O5


title: P7,Neg,KB0015,E5

value: Divding


title: P6-mDRIP-seq-BY4741-Input-R3

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>221


title: SVZ_Glast_D9_isch pJ [scNOME-seq]

value: TAP

value: TiCY-IFN(A/G)R KO


title: P7,Neg,KB0015,G5

value: Adult Spinal Cord Homeostatic


title: SVZ_Glast_E17_isch pJ [scNOME-seq]


title: SVZ_Glast_E16_isch pJ [scNOME-seq]

value: neuroblast


title: SVZ_Glast_E11_isch pJ [scNOME-seq]


title: P7,Neg,KB0015,K5

value: Corpus Callosum and Cerebellum

value: Neg


title: P7,Neg,KB0015,I5


title: SVZ_Glast_D8_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P6-mDRIP-seq-snf6Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>218 snf6<delta>


title: P7,Neg,KB0015,O9

value: Isolated Microglia


title: P7,Neg,KB0015,M9

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,E9


title: P7,Pos,KB0010,F4

value: Pos


title: SVZ_Glast_D2_isch pJ [scNOME-seq]


title: P6-mDRIP-seq-snf6Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>217 snf6<delta>


title: P6-mDRIP-seq-snf5Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>216 snf5<delta>


title: P7,Neg,KB0015,M5


title: SVZ_Glast_D1_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,Pos,KB0009,O4


title: P6-mDRIP-seq-snf5Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>215 snf5<delta>


title: P7,Pos,KB0009,A4


title: P7,Pos,KB0010,D4

value: Divding


title: P6-mDRIP-seq-BY4741-Input-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>220


title: P6-mDRIP-seq-BY4741-Input-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>219


title: SVZ_Glast_D17_isch pJ [scNOME-seq]

value: TAP

value: TiCY-IFN(A/G)R KO


title: P6-mDRIP-seq-snf2Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>214 snf2<delta>


title: SVZ_Glast_D16_isch pJ [scNOME-seq]

value: vSVZ astrocyte


title: P6-mDRIP-seq-snf2Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>213 snf2<delta>


title: SVZ_Glast_D15_isch pJ [scNOME-seq]

value: aNSC

value: 2 days post ischemia


title: P6-mDRIP-seq-rad51Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>212 rad51<delta>


title: P7,Pos,KB0010,P4

value: Corpus Callosum and Cerebellum

value: Isolated Microglia

value: PAM


title: SVZ_Glast_D5_isch pJ [scNOME-seq]

value: neuroblast


title: P7,Pos,KB0010,N9

value: Pos


title: P7,Pos,KB0010,J4

value: MHCII+


title: P7,Pos,KB0010,F9

value: Adult Spinal Cord Homeostatic


title: SVZ_Glast_D14_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,Pos,KB0009,O9


title: P6-mDRIP-seq-rad51Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>211 rad51<delta>


title: P7,Pos,KB0009,M9

value: Divding


title: P7,Pos,KB0010,D9

value: Early Postnatal Homeostatic


title: SVZ_Glast_D13_isch pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,Pos,KB0010,L9


title: SVZ_Glast_D12_isch pJ [scNOME-seq]


title: P6-mDRIP-seq-nam7Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>209 nam7<delta>


title: P7,Pos,KB0009,K4


title: SVZ_Glast_D11_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,P9


title: P7,Neg,KB0015,O8

value: Neg


title: P7,Pos,KB0010,J9


title: P6-mDRIP-seq-med1Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>208 med1<delta>


title: P7,Neg,KB0015,M8


title: SVZ_Glast_D10_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,Pos,KB0009,G4


title: P7,Neg,KB0015,K8


title: P6-mDRIP-seq-med1Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>207 med1<delta>


title: P7,Neg,KB0015,I8

value: Corpus Callosum and Cerebellum


title: P6-mDRIP-seq-dhh1Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>206 dhh1<delta>


title: P6-mDRIP-seq-dhh1Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>205 dhh1<delta>


title: P7,Neg,KB0015,O4

value: Isolated Microglia


title: SVZ_Glast_C8_isch pJ [scNOME-seq]

value: neuroblast


title: P6-mDRIP-seq-nam7Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>210 nam7<delta>


title: SVZ_Glast_C6_isch pJ [scNOME-seq]

value: vSVZ astrocyte


title: P7,Neg,KB0015,E4


title: P7,Neg,KB0015,G4


title: P6-mDRIP-seq-def1Δ-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>204 def1<delta>


title: P7,Pos,KB0009,C9

value: Pos


title: P7,Neg,KB0015,K4

value: Divding


title: P7,Neg,KB0015,A4

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,I4


title: SVZ_Glast_C3_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY-IFN(A/G)R KO


title: P6-mDRIP-seq-def1Δ-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>203 def1<delta>


title: P7,Pos,KB0012,N21

value: PAM


title: P6-mDRIP-seq-BY4741-R4

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>202


title: P6-mDRIP-seq-BY4741-R3

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>201


title: P7,Pos,KB0011,O21

value: Corpus Callosum and Cerebellum


title: P7,Pos,KB0012,B21


title: P7,Pos,KB0011,E21


title: P7,Pos,KB0011,M21


title: SVZ_Glast_C1_isch pJ [scNOME-seq]

value: aNSC

value: 2 days post ischemia


title: SVZ_Glast_C9_isch pJ [scNOME-seq]


title: P6-mDRIP-seq-BY4741-R2

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>200


title: P7,Pos,KB0011,I21

value: Isolated Microglia


title: P7,Pos,KB0011,G21


title: SVZ_Glast_C7_isch pJ [scNOME-seq]


title: P6-mDRIP-seq-BY4741-R1

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>199


title: P7,Pos,KB0011,C21

value: DAM 1


title: P7,Neg,KB0015,M4

value: Neg


title: SVZ_Glast_C17_isch pJ [scNOME-seq]

value: neuroblast


title: SVZ_Glast_C18_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,H12

value: Divding

value: Pos


title: P7,Pos,KB0012,J21


title: P7,Pos,KB0012,P21

value: Early Postnatal Homeostatic


title: SVZ_Glast_C15_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY-IFN(A/G)R KO


title: P5-mDRIP-seq-set2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>197 set2<delta>


title: P7,Pos,KB0010,N12


title: P5-mDRIP-seq-ypl277cΔ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>198 ypl277c<delta>


title: P7,Pos,KB0010,D12

value: PAM


title: SVZ_Glast_C2_isch pJ [scNOME-seq]

value: TAP


title: SVZ_Glast_C14_isch pJ [scNOME-seq]


title: P5-mDRIP-seq-sei1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>196 sei1<delta>


title: P7,Pos,KB0010,B12

value: Corpus Callosum and Cerebellum


title: P7,Pos,KB0010,L12


title: SVZ_Glast_C13_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P5-mDRIP-seq-sas3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>195 sas3<delta>


title: P5-mDRIP-seq-rtt102Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>194 rtt102<delta>


title: SVZ_Glast_C12_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,J12

value: Isolated Microglia


title: P7,Pos,KB0010,P12


title: SVZ_Glast_C11_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,F2

value: Adult Spinal Cord Homeostatic


title: P7,Pos,KB0010,N2

value: DAM 1


title: P7,Pos,KB0010,H2

value: Divding


title: SVZ_Glast_B9_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,D2

value: Pos


title: SVZ_Glast_B8_isch pJ [scNOME-seq]

value: aNSC


title: P7,Pos,KB0010,J2

value: Early Postnatal Homeostatic


title: P7,Pos,KB0010,P2


title: SVZ_Glast_B7_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY-IFN(A/G)R KO


title: P5-mDRIP-seq-kap120Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>190 kap120<delta>


title: P5-mDRIP-seq-rbp4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>191 rbp4<delta>


title: P7,Pos,KB0009,K2


title: P7,Pos,KB0010,F10


title: P7,Pos,KB0010,H10

value: PAM


title: P5-mDRIP-seq-jhd2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>189 jhd2<delta>


title: P7,Pos,KB0010,N10

value: Corpus Callosum and Cerebellum


title: SVZ_Glast_B6_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,Pos,KB0009,I12


title: SVZ_Glast_B1_isch pJ [scNOME-seq]


title: SVZ_Glast_B18_isch pJ [scNOME-seq]

value: neuroblast


title: P5-mDRIP-seq-jhd1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>188 jhd1<delta>


title: P7,Pos,KB0010,D10

value: Isolated Microglia


title: P5-mDRIP-seq-rsc2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>193 rsc2<delta>


title: P7,Pos,KB0010,L10


title: P7,Pos,KB0009,I10


title: P7,Pos,KB0010,J10


title: P5-mDRIP-seq-rph1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>192 rph1<delta>


title: P5-mDRIP-seq-isw2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>187 isw2<delta>


title: SVZ_Glast_B17_isch pJ [scNOME-seq]


title: P5-mDRIP-seq-hos2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>186 hos2<delta>


title: P7,Pos,KB0010,N7

value: Pos


title: SVZ_Glast_B15_isch pJ [scNOME-seq]


title: P7,Pos,KB0010,H7

value: Early Postnatal Homeostatic


title: P7,Pos,KB0010,D7


title: P5-mDRIP-seq-hos1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>185 hos1<delta>


title: SVZ_Glast_B14_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: reactive astrocyte

value: TiCY-IFN(A/G)R KO


title: P7,Pos,KB0010,B7

value: DAM 1


title: P5-mDRIP-seq-had2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>182 had2<delta>


title: P5-mDRIP-seq-hda3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>184 hda3<delta>


title: P7,Pos,KB0009,E1

value: Corpus Callosum and Cerebellum

value: PAM


title: P7,Pos,KB0009,O10


title: P7,Pos,KB0010,P7


title: SVZ_Glast_B12_isch pJ [scNOME-seq]

value: TAP

value: 2 days post ischemia


title: P7,Pos,KB0010,N1

value: Isolated Microglia

value: MHCII+


title: P5-mDRIP-seq-hda1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>183 hda1<delta>


title: P7,Pos,KB0010,L7


title: SVZ_Glast_A9_isch pJ [scNOME-seq]

value: neuroblast


title: P7,Pos,KB0010,L1

value: Pos


title: P7,Pos,KB0009,M1

value: Divding


title: P7,Pos,KB0009,K1


title: SVZ_Glast_B13_isch pJ [scNOME-seq]


title: P5-mDRIP-seq-BY4741-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>180


title: SVZ_Glast_B11_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: aNSC


title: P7,Pos,KB0010,D1


title: P5-mDRIP-seq-gis1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>181 gis1<delta>


title: SVZ_Glast_A7_isch pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,Pos,KB0009,G7


title: P7,Pos,KB0010,P1


title: P7,Pos,KB0009,C1

value: Early Postnatal Homeostatic


title: P5-mDRIP-seq-ypl277cΔ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>178 ypl277c<delta>


title: P7,Pos,KB0011,E18

value: Corpus Callosum and Cerebellum


title: P5-mDRIP-seq-arp5Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>179 arp5<delta>


title: SVZ_Glast_A8_isch pJ [scNOME-seq]

value: vSVZ astrocyte


title: P7,Pos,KB0010,J1


title: SVZ_Glast_A6_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,Pos,KB0011,O18

value: Isolated Microglia


title: P5-mDRIP-seq-set2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>177 set2<delta>


title: P7,Pos,KB0011,A18

value: PAM


title: SVZ_Glast_A5_isch pJ [scNOME-seq]

value: neuroblast


title: P7,Pos,KB0012,D18

value: Pos


title: P5-mDRIP-seq-sei1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>176 sei1<delta>


title: P7,Pos,KB0012,B18


title: P7,Pos,KB0012,L18


title: SVZ_Glast_A2_isch pJ [scNOME-seq]


title: P7,Pos,KB0012,J18


title: SVZ_Glast_A1_isch pJ [scNOME-seq]


title: SVZ_Glast_A18_isch pJ [scNOME-seq]


title: P7,Pos,KB0011,K18


title: P5-mDRIP-seq-sas3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>175 sas3<delta>


title: P5-mDRIP-seq-rtt102Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>174 rtt102<delta>


title: P7,Neg,KB0015,M11

value: Divding

value: Neg


title: P7,Neg,KB0015,O11


title: P5-mDRIP-seq-rsc2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>173 rsc2<delta>


title: SVZ_Glast_A17_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: aNSC

value: TiCY-IFN(A/G)R KO


title: P5-mDRIP-seq-rbp4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>171 rbp4<delta>


title: P7,Neg,KB0015,K11

value: Corpus Callosum and Cerebellum

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,I11

value: Isolated Microglia

value: Adult Spinal Cord Homeostatic


title: P5-mDRIP-seq-rph1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>172 rph1<delta>


title: P7,Neg,KB0015,C2

value: IEG+


title: SVZ_Glast_A15_isch pJ [scNOME-seq]

value: vSVZ astrocyte

value: 2 days post ischemia


title: P7,Neg,KB0015,O2


title: P5-mDRIP-seq-kap120Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>170 kap120<delta>


title: P7,Neg,KB0015,A2

value: PAM


title: P7,Pos,KB0011,C18

value: DAM 1

value: Pos


title: SVZ_Glast_A14_isch pJ [scNOME-seq]


title: P7,Neg,KB0015,M2

value: Divding

value: Neg


title: P7,Pos,KB0012,P18


title: SVZ_Glast_A13_isch pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: neuroblast


title: P7,Neg,KB0015,E2


title: P5-mDRIP-seq-jhd1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>168 jhd1<delta>


title: SVZ_Glast_A16_isch pJ [scNOME-seq]

value: TAP

value: TiCY-IFN(A/G)R KO


title: P7,Neg,KB0015,G2

value: Corpus Callosum and Cerebellum

value: Isolated Microglia

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,K2


title: P7,Neg,KB0015,I2


title: P5-mDRIP-seq-isw2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>167 isw2<delta>


title: P5-mDRIP-seq-jhd2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>169 jhd2<delta>


title: P7,Pos,KB0012,H19


title: SVZ_Glast_A12_isch pJ [scNOME-seq]

value: 2 days post ischemia


title: SVZ_Glast_A11_isch pJ [scNOME-seq]


title: Str_Glast_P9_naive pJ [scNOME-seq]

value: astrocyte (striatum)

value: IFN(A/G)R KO

value: naive


title: P5-mDRIP-seq-hos2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>166 hos2<delta>


title: P7,Pos,KB0012,N19

value: Divding

value: Pos


title: P7,Pos,KB0011,E19


title: P5-mDRIP-seq-hos1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>165 hos1<delta>


title: Str_Glast_P18_naive pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,Pos,KB0011,M19


title: P7,Pos,KB0011,O19

value: PAM


title: P5-mDRIP-seq-hda3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>164 hda3<delta>


title: P7,Pos,KB0011,G19


title: P7,Pos,KB0012,L19

value: Adult Spinal Cord Homeostatic


title: Str_Glast_P17_naive pJ [scNOME-seq]


title: P5-mDRIP-seq-hda1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>163 hda1<delta>


title: P7,Pos,KB0012,F19

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P7,Pos,KB0012,J19


title: Str_Glast_P15_naive pJ [scNOME-seq]


title: P7,Pos,KB0009,E8

value: Early Postnatal Homeostatic


title: P7,Neg,KB0015,G7

value: Neg


title: P7,Pos,KB0011,C19


title: Str_Glast_P11_naive pJ [scNOME-seq]


title: Str_Glast_P16_naive pJ [scNOME-seq]


title: P7,Pos,KB0011,K19


title: P4-mDRIP-seq-top3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>158 top3<delta>


title: P7,Pos,KB0010,H8


title: P5-mDRIP-seq-had2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>162 had2<delta>


title: P7,Pos,KB0010,N8


title: P5-mDRIP-seq-BY4741

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>160


title: P7,Pos,KB0012,N20


title: P5-mDRIP-seq-gis1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>161 gis1<delta>


title: P7,Pos,KB0009,O8


title: P7,Pos,KB0011,O20


title: P4-mDRIP-seq-set3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>156 set3<delta>


title: P7,Pos,KB0010,L8


title: P7,Pos,KB0010,B8


title: P5-mDRIP-seq-arp5Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>159 arp5<delta>


title: P7,Pos,KB0012,D20

value: Pos


title: P7,Pos,KB0012,F20


title: P4-mDRIP-seq-sac3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>155 sac3<delta>


title: P7,Pos,KB0012,B20


title: P7,Pos,KB0011,M20


title: Str_Glast_O8_naive pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)

value: IFN(A/G)R KO

value: naive


title: P7,Pos,KB0011,E20


title: P7,Pos,KB0011,G20

value: PAM


title: P4-mDRIP-seq-sin3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>157 sin3<delta>


title: Str_Glast_O7_naive pJ [scNOME-seq]


title: Str_Glast_O15_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-rad52Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>153 rad52<delta>


title: Str_Glast_O18_naive pJ [scNOME-seq]


title: Str_Glast_P13_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-rad51Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>152 rad51<delta>


title: Str_Glast_O11_naive pJ [scNOME-seq]


title: P7,Pos,KB0010,D8

value: Corpus Callosum and Cerebellum

value: Isolated Microglia

value: Early Postnatal Homeostatic


title: P4-mDRIP-seq-rtf1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>154 rtf1<delta>


title: P7,Pos,KB0011,A20


title: Str_Glast_O17_naive pJ [scNOME-seq]


title: Str_Glast_O9_naive pJ [scNOME-seq]


title: P7,Pos,KB0011,G22


title: P7,Pos,KB0012,D22


title: P4-mDRIP-seq-met2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>149 met2<delta>


title: Str_Glast_O16_naive pJ [scNOME-seq]


title: P7,Pos,KB0011,I22


title: P7,Pos,KB0011,M22


title: Str_Glast_N8_naive pJ [scNOME-seq]


title: P7,Pos,KB0012,L22


title: P7,Pos,KB0012,F22


title: P7,Pos,KB0011,I20


title: P7,Pos,KB0012,L20


title: P7,Pos,KB0012,H22


title: P4-mDRIP-seq-mrh4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>150 mrh4<delta>


title: Str_Glast_O10_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-maf1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>148 maf1<delta>


title: P7,Pos,KB0010,B6

value: Pos


title: P7,Pos,KB0012,J20


title: P4-mDRIP-seq-ies6Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>145 ies6<delta>


title: P4-mDRIP-seq-pdr11Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>151 pdr11<delta>


title: P7,Pos,KB0011,O22


title: Str_Glast_O14_naive pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)


title: P7,Pos,KB0009,G6

value: Divding


title: P4-mDRIP-seq-ies3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>144 ies3<delta>


title: P7,Pos,KB0011,C22

value: PAM


title: Str_Glast_N7_naive pJ [scNOME-seq]

value: IFN(A/G)R KO

value: naive


title: Str_Glast_N15_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-leo1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>147 leo1<delta>


title: P7,Pos,KB0010,J6

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: Str_Glast_N13_naive pJ [scNOME-seq]


title: P7,Pos,KB0012,P22


title: P7,Pos,KB0010,P6


title: P4-mDRIP-seq-ies1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>142 ies1<delta>


title: P7,Pos,KB0010,H6

value: Early Postnatal Homeostatic


title: Str_Glast_N18_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-irc5Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>146 irc5<delta>


title: P7,Pos,KB0010,N6

value: Adult Spinal Cord Homeostatic


title: P7,Pos,KB0010,D6

value: Pos


title: Str_Glast_N17_naive pJ [scNOME-seq]


title: Str_Glast_N16_naive pJ [scNOME-seq]


title: P7,Pos,KB0009,M6


title: P7,Pos,KB0011,K22


title: P4-mDRIP-seq-ies2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>143 ies2<delta>


title: P4-mDRIP-seq-htl1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>141 htl1<delta>


title: P7,neg,Plate1,O7

description: Plate1.O7.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Neg


title: P7,neg,Plate1,O4

description: Plate1.O4.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: Str_Glast_N10_naive pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)


title: P7,neg,Plate1,O2

description: Plate1.O2.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,O9

description: Plate1.O9.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,O1

description: Plate1.O1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Divding


title: Str_Glast_M9_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-top3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>138 top3<delta>


title: Str_Glast_N12_naive pJ [scNOME-seq]

value: IFN(A/G)R KO


title: Str_Glast_M7_naive pJ [scNOME-seq]

value: naive


title: P7,Pos,KB0010,L6


title: P7,neg,Plate1,O5

description: Plate1.O5.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: PAM


title: P7,neg,Plate1,O6

description: Plate1.O6.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Corpus Callosum and Cerebellum


title: Str_Glast_N11_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-dbp7Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>140 dbp7<delta>


title: P7,neg,Plate1,M8

description: Plate1.M8.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Isolated Microglia


title: Str_Glast_M17_naive pJ [scNOME-seq]


title: P7,neg,Plate1,O3

description: Plate1.O3.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,M6

description: Plate1.M6.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: MHCII+


title: P7,neg,Plate1,O12

description: Plate1.O12.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,O11

description: Plate1.O11.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Early Postnatal Homeostatic


title: Str_Glast_M12_naive pJ [scNOME-seq]


title: P7,neg,Plate1,M1

description: Plate1.M1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-sin3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>137 sin3<delta>


title: P7,neg,Plate1,M5

description: Plate1.M5.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,M12

description: Plate1.M12.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-rad51Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>132 rad51<delta>


title: Str_Glast_M11_naive pJ [scNOME-seq]


title: P7,neg,Plate1,M7

description: Plate1.M7.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: Str_Glast_M16_naive pJ [scNOME-seq]

description:
single-cell NOMe-seq
meth_mfrac_promoter.csv.gz
meth_shrunkResid_promoter.csv.gz
meth_mfrac_VMR.csv.gz
meth_shrunkResid_VMR.csv.gz
meth_coverage_VMR.csv.gz
acc_mfrac_promoter.csv.gz
acc_shrunkResid_promoter.csv.gz
acc_mfrac_VMR.csv.gz
acc_shrunkResid_VMR.csv.gz


title: Str_Glast_M10_naive pJ [scNOME-seq]


title: P4-mDRIP-seq-sac3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>135 sac3<delta>


title: P4-mDRIP-seq-BY4741-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>139


title: Str_Glast_KO2_P9 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO

value: 2 days post ischemia


title: P7,neg,Plate1,K7

description: Plate1.K7.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Neg


title: P7,neg,Plate1,M4

description: Plate1.M4.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,M10

description: Plate1.M10.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,O10

description: Plate1.O10.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-rtf1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>134 rtf1<delta>


title: P4-mDRIP-seq-rad52Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>133 rad52<delta>


title: P7,neg,Plate1,M9

description: Plate1.M9.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-pdr11Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>131 pdr11<delta>


title: Str_Glast_KO2_P7 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)


title: P4-mDRIP-seq-maf1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>128 maf1<delta>


title: P7,neg,Plate1,M3

description: Plate1.M3.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Corpus Callosum and Cerebellum


title: P4-mDRIP-seq-mrh4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>130 mrh4<delta>


title: P7,neg,Plate1,K5

description: Plate1.K5.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Isolated Microglia

value: Adult Spinal Cord Homeostatic


title: P7,neg,Plate1,K6

description: Plate1.K6.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: PAM


title: P7,neg,Plate1,K4

description: Plate1.K4.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Early Postnatal Homeostatic


title: P7,neg,Plate1,I7

description: Plate1.I7.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-met2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>129 met2<delta>


title: P7,neg,Plate1,K2

description: Plate1.K2.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-set3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>136 set3<delta>


title: Str_Glast_KO2_P4 pJ [scNOME-seq]

value: neurogenic striatal astrocyte

value: TiCY-IFN(A/G)R KO


title: Str_Glast_M14_naive pJ [scNOME-seq]

value: IFN(A/G)R KO

value: naive


title: P7,neg,Plate1,K1

description: Plate1.K1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Neg


title: P7,neg,Plate1,K12

description: Plate1.K12.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,I8

description: Plate1.I8.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-leo1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>127 leo1<delta>


title: P7,neg,Plate1,I2

description: Plate1.I2.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: IEG+


title: Str_Glast_KO2_P12 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)

value: 2 days post ischemia


title: Str_Glast_KO2_P2 pJ [scNOME-seq]

value: reactive astrocyte


title: P7,neg,Plate1,I4

description: Plate1.I4.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P7,neg,Plate1,G7

description: Plate1.G7.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: PAM


title: Str_Glast_KO2_P11 pJ [scNOME-seq]

description:
single-cell NOMe-seq
meth_mfrac_promoter.csv.gz
meth_shrunkResid_promoter.csv.gz
meth_mfrac_VMR.csv.gz
meth_shrunkResid_VMR.csv.gz
meth_coverage_VMR.csv.gz
acc_mfrac_promoter.csv.gz
acc_shrunkResid_promoter.csv.gz
acc_mfrac_VMR.csv.gz
acc_shrunkResid_VMR.csv.gz


title: P7,neg,Plate1,G6

description: Plate1.G6.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Early Postnatal Homeostatic


title: P4-mDRIP-seq-irc5Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>126 irc5<delta>


title: P7,neg,Plate1,K8

description: Plate1.K8.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Divding


title: Str_Glast_KO2_P6 pJ [scNOME-seq]


title: P7,neg,Plate1,I5

description: Plate1.I5.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-ies3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>124 ies3<delta>


title: P7,neg,Plate1,I1

description: Plate1.I1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-ies6Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>125 ies6<delta>


title: P7,neg,Plate1,I6

description: Plate1.I6.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-ies2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>123 ies2<delta>


title: P7,neg,Plate1,G5

description: Plate1.G5.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P7,neg,Plate1,G1

description: Plate1.G1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: P4-mDRIP-seq-htl1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>121 htl1<delta>


title: Str_Glast_KO2_P8 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,neg,Plate1,C1

description: Plate1.C1.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Neg


title: Str_Glast_KO2_P10 pJ [scNOME-seq]


title: P7,neg,Plate1,G2

description: Plate1.G2.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none


title: Str_Glast_KO2_O8 pJ [scNOME-seq]


title: P4-mDRIP-seq-dbp7Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>120 dbp7<delta>


title: Str_Glast_KO2_O6 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P4-mDRIP-seq-ies1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>122 ies1<delta>


title: P4-mDRIP-seq-BY4741

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>119


title: P7,rep1,Neg,Plate2,H9


title: P3-mDRIP-seq-yng2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>118 yng2<delta>


title: Str_Glast_KO2_O4 pJ [scNOME-seq]

value: astrocyte (striatum)

value: 2 days post ischemia


title: Str_Glast_KO2_O3 pJ [scNOME-seq]


title: P7,neg,Plate1,G4

description: Plate1.G4.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P3-mDRIP-seq-swm2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>117 swm2<delta>


title: P7,rep1,Neg,Plate2,H3

value: Early Postnatal Homeostatic


title: P7,neg,Plate1,G12

description: Plate1.G12.tdTneg.none.none.none.TMP4.Brain.P7.PAM.none

value: PAM


title: P7,rep1,Neg,Plate2,H4


title: P7,rep1,Neg,Plate2,H8


title: P7,rep1,Neg,Plate2,H5


title: P7,rep1,Neg,Plate2,H11


title: Str_Glast_KO2_N12 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,H2


title: P7,rep1,Neg,Plate2,H7

value: Divding


title: Str_Glast_KO2_N2 pJ [scNOME-seq]


title: P3-mDRIP-seq-suv3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>116 suv3<delta>


title: P7,rep1,Neg,Plate2,H10


title: P3-mDRIP-seq-sgs1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>115 sgs1<delta>


title: Str_Glast_KO2_N11 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate2,H6

value: Neg


title: P7,rep1,Neg,Plate2,H1


title: Str_Glast_KO2_N10 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,G8


title: P7,rep1,Neg,Plate2,G9


title: P3-mDRIP-seq-rpa34Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>114 rpa34<delta>


title: P7,rep1,Neg,Plate2,G5

value: Adult Brain Homeostatic


title: Str_Glast_KO2_O11 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,rep1,Neg,Plate2,G6

value: Adult Spinal Cord Homeostatic


title: P7,rep1,Neg,Plate2,G3


title: P7,rep1,Neg,Plate2,G7


title: P3-mDRIP-seq-rpa12Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>113 rpa12<delta>


title: Str_Glast_KO2_N1 pJ [scNOME-seq]

value: reactive astrocyte


title: P7,rep1,Neg,Plate2,H12


title: P3-mDRIP-seq-rdr1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>112 rdr1<delta>


title: P7,rep1,Neg,Plate2,G12

value: Corpus Callosum and Cerebellum


title: P7,rep1,Neg,Plate2,G10

value: Isolated Microglia


title: Str_Glast_KO2_M4 pJ [scNOME-seq]

value: astrocyte (striatum)

value: 2 days post ischemia


title: Str_Glast_KO2_M8 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,G4

value: Early Postnatal Homeostatic


title: P3-mDRIP-seq-rbs1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>111 rbs1<delta>


title: P7,rep1,Neg,Plate2,F9


title: Str_Glast_KO2_M3 pJ [scNOME-seq]


title: Str_Glast_KO2_M7 pJ [scNOME-seq]


title: P3-mDRIP-seq-rad51Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>110 rad51<delta>


title: Str_Glast_KO2_M6 pJ [scNOME-seq]


title: P3-mDRIP-seq-rad1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>109 rad1<delta>


title: P7,rep1,Neg,Plate2,G11


title: Str_Glast_KO2_M12 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate2,F4

value: Neg


title: P3-mDRIP-seq-npl6Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>108 npl6<delta>


title: Str_Glast_KO2_L9 pJ [scNOME-seq]


title: P3-mDRIP-seq-itc1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>106 itc1<delta>


title: P7,rep1,Neg,Plate2,F2


title: P3-mDRIP-seq-ime4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>105 ime4<delta>


title: P7,rep1,Neg,Plate2,F3


title: P7,rep1,Neg,Plate2,G2


title: P7,rep1,Neg,Plate2,F12

value: Adult Spinal Cord Homeostatic


title: P3-mDRIP-seq-ela1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>103 ela1<delta>


title: P7,rep1,Neg,Plate2,F8


title: P7,rep1,Neg,Plate2,F7


title: P3-mDRIP-seq-ldb7Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>107 ldb7<delta>


title: P3-mDRIP-seq-est1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>104 est1<delta>


title: P7,rep1,Neg,Plate2,F10

value: Corpus Callosum and Cerebellum


title: P7,rep1,Neg,Plate2,F6

value: Isolated Microglia


title: P7,rep1,Neg,Plate2,F11

value: IEG+


title: P7,rep1,Neg,Plate2,F5


title: Str_Glast_KO2_L5 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: astrocyte (striatum)

value: 2 days post ischemia


title: Str_Glast_KO2_M1 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,G1

value: Early Postnatal Homeostatic


title: Str_Glast_KO2_L8 pJ [scNOME-seq]

value: reactive astrocyte


title: P7,rep1,Neg,Plate2,E9


title: P7,rep1,Neg,Plate2,E8


title: P7,rep1,Neg,Plate2,E7


title: P7,rep1,Neg,Plate2,E5

value: Divding


title: P3-mDRIP-seq-BY4741-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>100


title: P7,rep1,Neg,Plate2,E3

value: Neg


title: P7,rep1,Neg,Plate2,E6


title: Str_Glast_KO2_L3 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate2,E4


title: P3-mDRIP-seq-ber1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>99 ber1<delta>


title: Str_Glast_KO2_L12 pJ [scNOME-seq]


title: Str_Glast_KO2_L10 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,E12


title: P7,rep1,Neg,Plate2,E2


title: P7,rep1,Neg,Plate2,F1


title: P3-mDRIP-seq-dbp3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>101 dbp3<delta>


title: P7,rep1,Neg,Plate2,E11


title: P3-mDRIP-seq-def1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>102 def1<delta>


title: P3-mDRIP-seq-swm2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>97 swm2<delta>


title: Str_Glast_KO2_K8 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,E1


title: P3-mDRIP-seq-yng2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>98 yng2<delta>


title: P7,rep1,Neg,Plate2,E10

value: Corpus Callosum and Cerebellum


title: P3-mDRIP-seq-suv3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>96 suv3<delta>


title: P7,rep1,Neg,Plate2,D9

value: Isolated Microglia


title: Str_Glast_KO2_L4 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,rep1,Neg,Plate2,D8


title: P3-mDRIP-seq-sgs1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>95 sgs1<delta>


title: Str_Glast_KO2_K3 pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,rep1,Neg,Plate2,D5

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate2,D6


title: P7,rep1,Neg,Plate2,D12


title: P7,rep1,Neg,Plate2,D7


title: Str_Glast_KO2_K7 pJ [scNOME-seq]

value: astrocyte (striatum)


title: Str_Glast_KO2_K1 pJ [scNOME-seq]


title: Str_Glast_KO2_K2 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: Str_Glast_KO2_J6 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,D3


title: P3-mDRIP-seq-rbs1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>91 rbs1<delta>


title: P7,rep1,Neg,Plate2,D1

value: Neg


title: P3-mDRIP-seq-rdr1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>92 rdr1<delta>


title: P3-mDRIP-seq-rpa12Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>93 rpa12<delta>


title: P3-mDRIP-seq-rpa34Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>94 rpa34<delta>


title: P7,rep1,Neg,Plate2,D11


title: Str_Glast_KO2_J8 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate2,D4


title: P7,rep1,Neg,Plate2,D10

value: PAM


title: P7,rep1,Neg,Plate2,C8


title: P7,rep1,Neg,Plate2,D2


title: P7,rep1,Neg,Plate2,C9


title: Str_Glast_KO2_J5 pJ [scNOME-seq]


title: Str_Glast_KO2_J4 pJ [scNOME-seq]


title: P3-mDRIP-seq-rad1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>89 rad1<delta>


title: P7,rep1,Neg,Plate2,C6

value: Corpus Callosum and Cerebellum

value: Divding


title: P7,rep1,Neg,Plate2,C7

value: Isolated Microglia


title: Str_Glast_KO2_J3 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P3-mDRIP-seq-npl6Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>88 npl6<delta>


title: P7,rep1,Neg,Plate2,C5


title: P3-mDRIP-seq-rad51Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>90 rad51<delta>


title: P7,rep1,Neg,Plate2,C4

value: Early Postnatal Homeostatic


title: P3-mDRIP-seq-ldb7Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>87 ldb7<delta>


title: P7,rep1,Neg,Plate2,C2


title: Str_Glast_KO2_J10 pJ [scNOME-seq]

value: neurogenic striatal astrocyte

value: 2 days post ischemia


title: P3-mDRIP-seq-est1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>84 est1<delta>


title: Str_Glast_KO2_I9 pJ [scNOME-seq]

value: astrocyte (striatum)


title: P7,rep1,Neg,Plate2,C11

value: Neg


title: P7,rep1,Neg,Plate2,C1


title: P7,rep1,Neg,Plate2,C12


title: P7,rep1,Neg,Plate2,C10


title: P7,rep1,Neg,Plate2,B9


title: Str_Glast_KO2_J1 pJ [scNOME-seq]


title: P3-mDRIP-seq-itc1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>86 itc1<delta>


title: Str_Glast_KO2_I5 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P3-mDRIP-seq-ela1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>83 ela1<delta>


title: Str_Glast_KO2_I8 pJ [scNOME-seq]


title: P3-mDRIP-seq-ime4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>85 ime4<delta>


title: P7,rep1,Neg,Plate2,B7

value: Corpus Callosum and Cerebellum


title: P3-mDRIP-seq-def1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>82 def1<delta>


title: Str_Glast_KO2_I7 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,B5

value: Isolated Microglia


title: P7,rep1,Neg,Plate2,B8


title: P7,rep1,Neg,Plate2,B6

value: Divding


title: Str_Glast_KO2_I4 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,rep1,Neg,Plate2,C3


title: P7,rep1,Neg,Plate2,B3


title: P7,rep1,Neg,Plate2,B12


title: P7,rep1,Neg,Plate2,B2


title: P3-mDRIP-seq-BY4741

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>80


title: P3-mDRIP-seq-dbp3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>81 dbp3<delta>


title: P7,rep1,Neg,Plate2,B1

value: Early Postnatal Homeostatic


title: Str_Glast_KO2_I2 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,B10


title: Str_Glast_KO2_I12 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,A9


title: P3-mDRIP-seq-ber1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>79 ber1<delta>


title: P2-mDRIP-seq-srs2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>78 srs2<delta>


title: P7,rep1,Neg,Plate2,B11


title: P7,rep1,Neg,Plate2,A8


title: Str_Glast_KO1_H8 pJ [scNOME-seq]

value: 2 days post ischemia


title: P2-mDRIP-seq-ski2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>76 ski2<delta>


title: P7,rep1,Neg,Plate2,A7

value: Neg


title: P7,rep1,Neg,Plate2,A3


title: P7,rep1,Neg,Plate2,A6


title: P2-mDRIP-seq-sol1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>77 sol1<delta>


title: Str_Glast_KO1_H7 pJ [scNOME-seq]

value: astrocyte (striatum)

value: TiCY-IFN(A/G)R KO


title: Str_Glast_KO1_H9 pJ [scNOME-seq]


title: Str_Glast_KO1_H5 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate2,A12


title: Str_Glast_KO2_I3 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: P7,rep1,Neg,Plate2,A2

value: Corpus Callosum and Cerebellum


title: P2-mDRIP-seq-rpo41Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>75 rpo41<delta>


title: P2-mDRIP-seq-rpa14Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>74 rpa14<delta>


title: P7,rep1,Neg,Plate2,A10

value: Isolated Microglia


title: P7,rep1,Neg,Plate2,A5


title: P7,rep1,Neg,Plate2,A4

value: Divding


title: P7,rep1,Neg,Plate2,A1


title: P7,rep1,Neg,Plate2,A11


title: P2-mDRIP-seq-rad50Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>73 rad50<delta>


title: Str_Glast_KO1_H3 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: Str_Glast_KO1_H11 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,H8

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate1,H7

value: IEG+


title: P2-mDRIP-seq-rad10Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>72 rad10<delta>


title: Str_Glast_KO1_H2 pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,H6


title: P7,rep1,Neg,Plate1,H3


title: Str_Glast_KO1_G9 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,H2


title: Str_Glast_KO1_H1 pJ [scNOME-seq]

value: reactive astrocyte


title: P7,rep1,Neg,Plate1,H12

value: Adult Spinal Cord Homeostatic

value: Neg


title: P7,rep1,Neg,Plate1,H4


title: P2-mDRIP-seq-med1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>70 med1<delta>


title: Str_Glast_KO1_G4 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: Str_Glast_KO1_G5 pJ [scNOME-seq]

value: astrocyte (striatum)


title: P2-mDRIP-seq-irc20Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>68 irc20<delta>


title: P7,rep1,Neg,Plate1,H10

value: Corpus Callosum and Cerebellum


title: P7,rep1,Neg,Plate1,H11


title: P7,rep1,Neg,Plate1,H9


title: P2-mDRIP-seq-inp1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>67 inp1<delta>


title: P7,rep1,Neg,Plate1,H1

value: Isolated Microglia


title: P7,rep1,Neg,Plate1,G9


title: P7,rep1,Neg,Plate1,H5

value: PAM


title: P2-mDRIP-seq-nam7Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>71 nam7<delta>


title: P2-mDRIP-seq-irc3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>69 irc3<delta>


title: P2-mDRIP-seq-ies4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>66 ies4<delta>


title: P7,rep1,Neg,Plate1,G7


title: Str_Glast_KO1_G2 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: neurogenic striatal astrocyte


title: Str_Glast_KO1_G3 pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,G6

value: Adult Brain Homeostatic


title: Str_Glast_KO1_G11 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,G4

value: Early Postnatal Homeostatic


title: Str_Glast_KO1_G10 pJ [scNOME-seq]


title: Str_Glast_KO1_G1 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,G12

value: Adult Spinal Cord Homeostatic

value: Neg


title: P7,rep1,Neg,Plate1,G2


title: P2-mDRIP-seq-dhh1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>62 dhh1<delta>


title: P2-mDRIP-seq-ecm32Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>63 ecm32<delta>


title: P7,rep1,Neg,Plate1,G11


title: P2-mDRIP-seq-chd1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>61 chd1<delta>


title: P7,rep1,Neg,Plate1,G10

value: Corpus Callosum and Cerebellum

value: IEG+


title: Str_Glast_KO1_F8 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate1,F9

value: Isolated Microglia


title: Str_Glast_KO1_F6 pJ [scNOME-seq]

value: astrocyte (striatum)


title: P7,rep1,Neg,Plate1,G8


title: P7,rep1,Neg,Plate1,G1

value: Divding


title: P2-mDRIP-seq-gal7Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>65 gal7<delta>


title: P2-mDRIP-seq-elc1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>64 elc1<delta>


title: Str_Glast_KO1_F5 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,rep1,Neg,Plate1,G3


title: P7,rep1,Neg,Plate1,G5


title: P7,rep1,Neg,Plate1,F8


title: P7,rep1,Neg,Plate1,F6


title: P2-mDRIP-seq-atr1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>59 atr1<delta>


title: P2-mDRIP-seq-BY4741-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>60


title: Str_Glast_KO1_F4 pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,F7

value: Adult Spinal Cord Homeostatic


title: P7,rep1,Neg,Plate1,F5

value: PAM

value: Neg


title: P7,rep1,Neg,Plate1,F3

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate1,F2


title: P2-mDRIP-seq-srs2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>58 srs2<delta>


title: Str_Glast_KO1_F12 pJ [scNOME-seq]


title: Str_Glast_KO1_F2 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: P7,rep1,Neg,Plate1,F12

value: Corpus Callosum and Cerebellum


title: P7,rep1,Neg,Plate1,F11


title: Str_Glast_KO1_F11 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P2-mDRIP-seq-rpo41Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>55 rpo41<delta>


title: Str_Glast_KO1_F10 pJ [scNOME-seq]

value: astrocyte (striatum)


title: P7,rep1,Neg,Plate1,F10

value: Isolated Microglia

value: DAM 2


title: P7,rep1,Neg,Plate1,E9

value: DAM 1


title: P7,rep1,Neg,Plate1,E7


title: P7,rep1,Neg,Plate1,E6

value: Divding


title: P7,rep1,Neg,Plate1,F4


title: P2-mDRIP-seq-rad50Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>53 rad50<delta>


title: P2-mDRIP-seq-rpa14Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>54 rpa14<delta>


title: P7,rep1,Neg,Plate1,E8


title: Str_Glast_KO1_E7 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,E5


title: P2-mDRIP-seq-rad10Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>52 rad10<delta>


title: P7,rep1,Neg,Plate1,E3

value: Adult Brain Homeostatic

value: Neg


title: P7,rep1,Neg,Plate1,E4

value: Adult Spinal Cord Homeostatic


title: P2-mDRIP-seq-nam7Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>51 nam7<delta>


title: Str_Glast_KO1_F1 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: P2-mDRIP-seq-ski2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>56 ski2<delta>


title: P2-mDRIP-seq-sol1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>57 sol1<delta>


title: P7,rep1,Neg,Plate1,E12

value: Corpus Callosum and Cerebellum

value: IEG+


title: P7,rep1,Neg,Plate1,E11

value: Isolated Microglia

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate1,E10


title: P7,rep1,Neg,Plate1,F1


title: Str_Glast_KO1_E2 pJ [scNOME-seq]

value: astrocyte (striatum)

value: TiCY-IFN(A/G)R KO


title: P2-mDRIP-seq-med1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>50 med1<delta>


title: P2-mDRIP-seq-irc3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>49 irc3<delta>


title: P7,rep1,Neg,Plate1,E1


title: P7,rep1,Neg,Plate1,D9


title: P7,rep1,Neg,Plate1,D8


title: Str_Glast_KO1_E11 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: 2 days post ischemia


title: P2-mDRIP-seq-irc20Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>48 irc20<delta>


title: P7,rep1,Neg,Plate1,D7

value: Transitional DAM

value: Neg


title: Str_Glast_KO1_E5 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,D6


title: P7,rep1,Neg,Plate1,D5


title: P7,rep1,Neg,Plate1,D4

value: Adult Spinal Cord Homeostatic


title: P2-mDRIP-seq-inp1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>47 inp1<delta>


title: Str_Glast_KO1_E1 pJ [scNOME-seq]


title: P2-mDRIP-seq-ies4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>46 ies4<delta>


title: Str_Glast_KO1_D6 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: P7,rep1,Neg,Plate1,E2

value: Corpus Callosum and Cerebellum


title: Str_Glast_KO1_E3 pJ [scNOME-seq]


title: P2-mDRIP-seq-gal7Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>45 gal7<delta>


title: P7,rep1,Neg,Plate1,D2

value: Isolated Microglia


title: P7,rep1,Neg,Plate1,D3

value: PAM


title: Str_Glast_KO1_D5 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,D11


title: Str_Glast_KO1_D2 pJ [scNOME-seq]


title: P2-mDRIP-seq-ecm32Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>43 ecm32<delta>


title: P2-mDRIP-seq-elc1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>44 elc1<delta>


title: P7,rep1,Neg,Plate1,C8


title: P7,rep1,Neg,Plate1,D1

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate1,C7

value: Adult Brain Homeostatic


title: Str_Glast_KO1_D10 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY-IFN(A/G)R KO


title: P2-mDRIP-seq-dhh1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>42 dhh1<delta>


title: P7,rep1,Neg,Plate1,D10


title: Str_Glast_KO1_D1 pJ [scNOME-seq]

value: astrocyte (striatum)

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,C6

value: Neg


title: Str_Glast_KO1_D7 pJ [scNOME-seq]


title: Str_Glast_KO1_C9 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,C5


title: P2-mDRIP-seq-BY4741

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>40


title: P7,rep1,Neg,Plate1,C4


title: P7,rep1,Neg,Plate1,C3

value: Adult Spinal Cord Homeostatic


title: Str_Glast_KO1_C8 pJ [scNOME-seq]


title: P2-mDRIP-seq-atr1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>39 atr1<delta>


title: Str_Glast_KO1_C7 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,C2

value: Corpus Callosum and Cerebellum


title: P7,rep1,Neg,Plate1,C12


title: Str_Glast_KO1_C5 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,C9


title: P7,rep1,Neg,Plate1,C11


title: P7,rep1,Neg,Plate1,C10


title: P1-mDRIP-seq-swp82Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>38 swp82<delta>


title: P7,rep1,Neg,Plate1,B7

value: Isolated Microglia

value: Divding


title: P7,rep1,Neg,Plate1,B9


title: P1-mDRIP-seq-swi4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>36 swi4<delta>


title: P7,rep1,Neg,Plate1,B6

value: IEG+


title: Str_Glast_KO1_C3 pJ [scNOME-seq]


title: Str_Glast_KO1_C2 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,D12

value: Early Postnatal Homeostatic


title: P7,rep1,Neg,Plate1,B8


title: P7,rep1,Neg,Plate1,C1


title: P1-mDRIP-seq-snf6Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>35 snf6<delta>


title: Str_Glast_KO1_C12 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P1-mDRIP-seq-snf5Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>34 snf5<delta>


title: P7,rep1,Neg,Plate1,B5


title: P7,rep1,Neg,Plate1,B2

value: PAM


title: Str_Glast_KO1_C11 pJ [scNOME-seq]

value: astrocyte (striatum)

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate1,B4

value: Neg


title: P7,rep1,Neg,Plate1,B12


title: P7,rep1,Neg,Plate1,B11


title: P1-mDRIP-seq-snf4Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>33 snf4<delta>


title: P1-mDRIP-seq-snf3Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>32 snf3<delta>


title: Str_Glast_KO1_C10 pJ [scNOME-seq]

value: 2 days post ischemia


title: P7,rep1,Neg,Plate1,B3

value: Corpus Callosum and Cerebellum


title: Str_Glast_KO1_B9 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: P1-mDRIP-seq-swi6Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>37 swi6<delta>


title: P7,rep1,Neg,Plate1,B1

value: Isolated Microglia


title: P1-mDRIP-seq-snf2Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>31 snf2<delta>


title: P7,rep1,Neg,Plate1,B10

value: Divding


title: Str_Glast_KO1_B8 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,A9

value: Early Postnatal Homeostatic


title: P1-mDRIP-seq-snf1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>30 snf1<delta>


title: Str_Glast_KO1_B5 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P7,rep1,Neg,Plate1,A8


title: Str_Glast_KO1_B3 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,A5


title: P1-mDRIP-seq-rnh70Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>28 rnh70<delta>


title: P1-mDRIP-seq-snf11Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>29 snf11<delta>


title: Str_Glast_KO1_B12 pJ [scNOME-seq]

value: astrocyte (striatum)


title: P7,rep1,Neg,Plate1,A3


title: P1-mDRIP-seq-rnh203Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>27 rnh203<delta>


title: P7,rep1,Neg,Plate1,A2

value: Neg


title: Str_Glast_KO1_B10 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: P7,rep1,Neg,Plate1,A12


title: Str_Glast_KO1_A9 pJ [scNOME-seq]


title: P7,rep1,Neg,Plate1,A11

value: IEG+


title: P1-mDRIP-seq-rnh202Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>26 rnh202<delta>


title: P2-mDRIP-seq-chd1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>41 chd1<delta>


title: FAD,rep2,Pos,Plate2,H9

source_name: Brain

value: Brain

value: DAM 1

value: 4 months

value: Pos


title: P7,rep1,Neg,Plate1,A1

value: Corpus Callosum and Cerebellum

value: Isolated Microglia


title: P1-mDRIP-seq-rnh201Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>25 rnh201<delta>


title: Str_Glast_KO1_A8 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: neurogenic striatal astrocyte

value: 2 days post ischemia


title: P1-mDRIP-seq-rnh1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>24 rnh1<delta>


title: P7,rep1,Neg,Plate1,A6

value: Early Postnatal Homeostatic


title: FAD,rep2,Pos,Plate2,H8

value: Transitional DAM


title: FAD,rep2,Pos,Plate2,H7

value: Adult Brain Homeostatic


title: P7,rep1,Neg,Plate1,A7

value: Divding

value: Neg


title: P7,rep1,Neg,Plate1,A4


title: FAD,rep2,Pos,Plate2,H6

value: MHCII+


title: Str_Glast_KO1_A7 pJ [scNOME-seq]

value: astrocyte (striatum)

value: TiCY-IFN(A/G)R KO


title: P1-mDRIP-seq-rad51Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>23 rad51<delta>


title: Str_Glast_KO1_A6 pJ [scNOME-seq]


title: FAD,rep2,Pos,Plate2,H3

value: Brain

value: 4 months

value: Pos


title: P1-mDRIP-seq-pex25Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>22 pex25<delta>


title: P1-mDRIP-seq-dbp1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>21 dbp1<delta>


title: FAD,rep2,Pos,Plate2,H5

value: Isolated Microglia


title: Str_Glast_KO1_A5 pJ [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: 2 days post ischemia


title: FAD,rep2,Pos,Plate2,H2

value: DAM 1


title: Str_Glast_KO1_A4 pJ [scNOME-seq]

value: neurogenic striatal astrocyte


title: FAD,rep2,Pos,Plate2,H11


title: FAD,rep2,Pos,Plate2,H12


title: P1-mDRIP-seq-BY4741-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>20


title: FAD,rep2,Pos,Plate2,H1


title: Str_Glast_KO1_A12 pJ [scNOME-seq]


title: P1-mDRIP-seq-adr1Δ-Input

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>19 adr1<delta>


title: P1-mDRIP-seq-swp82Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>18 swp82<delta>


title: FAD,rep2,Pos,Plate2,G8

value: Transitional DAM


title: FAD,rep2,Pos,Plate2,H4

value: Adult Brain Homeostatic


title: Str_Glast_KO1_A10 pJ [scNOME-seq]

value: TiCY-IFN(A/G)R KO


title: FAD,rep2,Pos,Plate2,G9

value: DAM 2


title: Str_Glast_KO1_A1 pJ [scNOME-seq]


title: FAD,rep2,Pos,Plate2,G6

value: Brain


title: P1-mDRIP-seq-swi6Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>17 swi6<delta>


title: FAD,rep2,Pos,Plate2,G7

value: 4 months

value: Pos


title: P7,rep1,Neg,Plate1,A10

value: Corpus Callosum and Cerebellum

value: Early Postnatal Homeostatic

value: Neg


title: SVZ_Glast_640 pI [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: TiCY

value: 2 days post ischemia


title: FAD,rep2,Pos,Plate2,G4

value: Isolated Microglia


title: P1-mDRIP-seq-swi4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>16 swi4<delta>


title: FAD,rep2,Pos,Plate2,G5

value: DAM 1


title: P1-mDRIP-seq-snf6Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>15 snf6<delta>


title: SVZ_Glast_522 pI [scNOME-seq]


title: SVZ_Glast_566 pI [scNOME-seq]


title: FAD,rep2,Pos,Plate2,G11


title: FAD,rep2,Pos,Plate2,G3

value: Transitional DAM


title: FAD,rep2,Pos,Plate2,G2


title: FAD,rep2,Pos,Plate2,G12


title: FAD,rep2,Pos,Plate2,G10

value: Adult Brain Homeostatic


title: FAD,rep2,Pos,Plate2,H10


title: SVZ_Glast_485 pI [scNOME-seq]


title: P1-mDRIP-seq-snf4Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>13 snf4<delta>


title: FAD,rep2,Pos,Plate2,F9

value: Brain


title: FAD,rep2,Pos,Plate2,F8


title: SVZ_Glast_460 pI [scNOME-seq]


title: P1-mDRIP-seq-snf3Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>12 snf3<delta>


title: FAD,rep2,Pos,Plate2,F7

value: DAM 2

value: 4 months


title: Str_Glast_96 pI [scNOME-seq]

value: neurogenic striatal astrocyte


title: FAD,rep2,Pos,Plate2,F6

value: Adult Spinal Cord Homeostatic

value: Pos


title: P1-mDRIP-seq-snf2Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>11 snf2<delta>


title: FAD,rep2,Pos,Plate2,F5


title: FAD,rep2,Pos,Plate2,F3


title: Str_Glast_43 pI [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: reactive astrocyte

value: TiCY


title: FAD,rep2,Pos,Plate2,F2

value: Isolated Microglia


title: Str_Glast_88 pI [scNOME-seq]

value: 2 days post ischemia


title: FAD,rep2,Pos,Plate2,F4


title: P1-mDRIP-seq-rnh70Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>8 rnh70<delta>


title: P1-mDRIP-seq-snf5Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>14 snf5<delta>


title: P1-mDRIP-seq-snf1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>10 snf1<delta>


title: FAD,rep2,Pos,Plate2,F12


title: Str_Glast_297 pI [scNOME-seq]


title: FAD,rep2,Pos,Plate2,F11

value: DAM 1


title: FAD,rep2,Pos,Plate2,F10

value: Brain

value: Transitional DAM


title: P1-mDRIP-seq-rnh203Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>7 rnh203<delta>


title: Str_Glast_293 pI [scNOME-seq]


title: FAD,rep2,Pos,Plate2,E9

value: 4 months


title: Str_Glast_287 pI [scNOME-seq]


title: FAD,rep2,Pos,Plate2,E8


title: FAD,rep2,Pos,Plate2,E7

value: Adult Brain Homeostatic


title: P1-mDRIP-seq-rnh202Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>6 rnh202<delta>


title: Str_Glast_274 pI [scNOME-seq]

value: neurogenic striatal astrocyte


title: FAD,rep2,Pos,Plate2,E5

value: Pos


title: FAD,rep2,Pos,Plate2,E6


title: P1-mDRIP-seq-rnh201Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>5 rnh201<delta>


title: Str_Glast_193 pI [scNOME-seq]

value: striatum & ventricular-subventricular zone

value: reactive astrocyte


title: FAD,rep2,Pos,Plate2,E3

value: Isolated Microglia


title: FAD,rep2,Pos,Plate2,E4


title: Str_Glast_174 pI [scNOME-seq]

value: TiCY

value: 2 days post ischemia


title: P1-mDRIP-seq-snf11Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>9 snf11<delta>


title: FAD,rep2,Pos,Plate2,E2


title: P1-mDRIP-seq-rad51Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>3 rad51<delta>


title: FAD,rep2,Pos,Plate2,E11

value: DAM 1


title: FAD,rep2,Pos,Plate2,E10

value: Brain


title: Str_Glast_158 pI [scNOME-seq]


title: Str_Glast_154 pI [scNOME-seq]


title: P1-mDRIP-seq-pex25Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>2 pex25<delta>


title: FAD,rep2,Pos,Plate2,E1

value: Transitional DAM


title: FAD,rep2,Pos,Plate2,F1

value: 4 months


title: P1-mDRIP-seq-rnh1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>4 rnh1<delta>


title: FAD,rep2,Pos,Plate2,D9


title: P1-mDRIP-seq-dbp1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>1 dbp1<delta>


title: FAD,rep2,Pos,Plate2,D8


title: Str_Glast_119 pI [scNOME-seq]

value: neurogenic striatal astrocyte


title: FAD,rep2,Pos,Plate2,D6

value: Adult Spinal Cord Homeostatic

value: Pos


title: FAD,rep2,Pos,Plate2,D7


title: P1-mDRIP-seq-BY4741

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>0


title: FAD,rep2,Pos,Plate2,E12


title: Str_Glast_104 pI [scNOME-seq]

value: striatum & ventricular-subventricular zone


title: P1-mDRIP-seq-adr1Δ

value: MATa his3<delta>1 leu2<delta>0 met15<delta>0 ura3<delta>1 adr1<delta>


title: FAD,rep2,Pos,Plate2,D5

value: Isolated Microglia


title: FAD,rep2,Pos,Plate2,D3


title: SVZ_Glast_96 pH [scNOME-seq]

value: TiCY

value: 21 days post ischemia


title: FAD,rep2,Pos,Plate2,D4


title: FAD,rep2,Pos,Plate2,D2


title: FAD,rep2,Pos,Plate2,D11


title: S84-mDRIP-seq-BY4741

data_processing:
library strategy: mDRIP-seq
Basecalls were performed using bcl2fastq v2.17 for Novaseq output.
Raw reads with low quality and adaptor contamination were trimmed, and short reads less than 50 pb were filtered by Trim Galore (version 0.6.7)
After trimming, clean reads were aligned to the genomes (BW25113 genome for E. coli, sacCer3 genome for yeast, GRCh38 genome for humans, mm10 genome for mice, TAIR10 genome for Arabidopsis, MSU version 7.0 for rice) with Bowtie 2 (version 2.2.5) using local alignment mode.
Assembly: BW25113 genome for E. coli, sacCer3 genome for yeast, GRCh38 genome for humans, mm10 genome for mice, TAIR10 genome for Arabidopsis, MSU version 7.0 for rice
Supplementary files format and content: bigWig

extract_protocol:
For mammal and E. coli genomic DNA extraction, cells were lysed by 0.5% SDS and digested with 0.1mg/mL proteinase K (TransGen Biotech#: GE201-01) at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method. For Arabidopsis and rice gDNA extraction, seedlings were grounded in liquid nitrogen and then lysed by 0.5% SDS and digested with 0.1 mg/mL proteinase K (TransGen Biotech#: GE201-01) at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method. For yeast gDNA extraction, cells were resuspended in TE buffer with 0.5% NP40 and equal volume glass beads (Sigma#: G8772), and beat 6 times in 30 sec at 60 Hz with 1 min pausing at 4°C to destroy cell walls. Then cells were collected, lysed by 0.5% SDS and digested with 0.1mg/mL proteinase K at 37°C in a shake with 220 rpm for 4-6 hours followed by phenol-chloroform nucleic acid extraction method. For cDNA hybrids synthesis, total RNA was extracted according to the manual of TRIzol™ (ThermoFisher Scintific#:15596026) from the manufacturer. DNase I (ThermoFisher Scintific#: EN0521) treatment was performed at 37°C to remove potential gDNA contamination. cDNA hybrids were synthesized by ProtoScript® II Reverse Transcriptase with d(T)23VN primer according to the manufacturer’s manual. Then, cDNA hybrids were incubated with MBN at 30°C for 30 min to remove remaining primers and RNA while only production with DNA:RNA hybrid form can be retained.
Nucleic acid was digested with MBN at 30°C for 1 hour and purified using the phenol-chloroform nucleic acid extraction method followed by resuspending the pellet in 130 μl TE buffer. Sonication with Covaris™ ME220 (Covaris, 70 W, 20% Duty factor, 1000 cycles per burst, 130 s, at 4–20°C) was performed to fragment nucleic acid with peak size around 250 bp and quantified by Qubit™ dsDNA HS Assay Kit (ThermoFisher Scintific#:Q32851). For multiple samples that would be used as a pool for DRIP, sonicated DNA was diluted to the needed concentration and barcoded in DNA:RNA hybrids tailing and ligation reaction for each sample as above mentioned at 37°C for 1 hour with barcode adaptors (Table S2) followed by adding 2 μL 0.5 M EDTA to stop the reaction. Then, these barcoded samples were pooled together and purified using the phenol-chloroform nucleic acid extraction method. The purified nucleic acid pellet was resuspended in TE buffer followed by DRIP and library construction for sequencing as described in ssDRIP-seq.

value: WT

value: Untreated


title: S83-mDRIP-seq-Input-BY4741


title: FAD,rep2,Pos,Plate2,D10

value: Brain

value: Adult Brain Homeostatic


title: FAD,rep2,Pos,Plate2,C7

value: DAM 1


title: S83-mDRIP-seq-BY4741


title: SVZ_Glast_L9_naive pJ

description:
single-cell RNA-seq
RNA_count_matrix.csv

library_source: transcriptomic single cell

data_processing:
mapping with STAR via zUMIs
transcript quantification with featureCounts via zUMIs
Assembly: GRCm38 (mm10)
Supplementary files format and content: Single-cell RNA-seq count matrix in csv (comma-separated values) format. Values are not normalized, decimals are due to distribution of multimapping reads.

extract_protocol:
For the ischemia experiment, the vSVZ and striatum were isolated. For the naïve experiments, vSVZ, striatum, and olfactory bulb were isolated. Depending on the plate, individual or pooled mice were used to sort cells on plate. Tissues were processed and sorted in a BD FACSAria II at the DKFZ Flow Cytometry Facility. Cells were stained with the following antibodies (all conditions and tissues together): O4-APC and O4-APC-Vio770 (Miltenyi; diluted 1:50), Ter119-APC-Cy7 (Biolegend; 1:100), CD45-APC-Cy7 (BD; 1:200), GLAST (ACSA-1)-PE (Miltenyi: 1:20), PSA-NCAM-PE-Vio770 (Miltenyi; 1:75), Prominin1-A488 (eBioscience; 1:75), and Sytox Blue (Life Technologies, 1:1000), CD9-eFluo450 (eBioscience, 1:300).
For profiling the transcriptome and epigenome of single cells we developed and implemented a miniaturized and higher throughput version of the scNMT-seq protocol (Clark et al., 2018). On this new version, the Smart-seq3 (Hagemann-Jensen et al., 2020) method and specific normalization steps were implemented. A detailed version of the protocol is described in Cerrizuela et al., (2022).The samples listed here represent the transcriptomic portion of this multi-omic data set.

value: vSVZ astrocyte

value: IFN(A/G)R KO

value: naive


title: SVZ_Glast_L8_naive pJ


title: FAD,rep2,Pos,Plate2,D1

value: 4 months


title: FAD,rep2,Pos,Plate2,C6


title: SVZ_Glast_L7_naive pJ


title: FAD,rep2,Pos,Plate2,C5


title: S88-mDRIP-seq-Input-Rice9311

organism: Oryza sativa

source_name: 14d seedlings

value: 14d seedlings


title: SVZ_Glast_L17_naive pJ

value: neuroblast


title: FAD,rep2,Pos,Plate2,C3

value: Adult Spinal Cord Homeostatic

value: Pos


title: S88-mDRIP-seq-Rice9311

source_name: 9312 14d seedlings

value: 9312 14d seedlings


title: S84-mDRIP-seq-Input-BY4741


title: S87-mDRIP-seq-Input-Rice9311


title: SVZ_Glast_L14_naive pJ

value: striatum & ventricular-subventricular zone


title: FAD,rep2,Pos,Plate2,C4

value: Isolated Microglia


title: FAD,rep2,Pos,Plate2,C2

value: Transitional DAM


title: S87-mDRIP-seq-Rice9311

source_name: 9311 14d seedlings

value: 9311 14d seedlings

value: WT


title: FAD,rep2,Pos,Plate2,C12

value: Brain


title: SVZ_Glast_L16_naive pJ


title: FAD,rep2,Pos,Plate2,D12


title: FAD,rep2,Pos,Plate2,C8


title: SVZ_Glast_L13_naive pJ


title: SVZ_Glast_L18_naive pJ


title: FAD,rep2,Pos,Plate2,C10


title: FAD,rep2,Pos,Plate2,C1

value: MHCII+


title: SVZ_Oligo_I24 pM

value: oligodendrocyte

value: TiCY


title: FAD,rep2,Pos,Plate2,B9

value: Adult Brain Homeostatic


title: SVZ_Oligo_I23 pM

value: naive


title: FAD,rep2,Pos,Plate2,B8

value: DAM 1

value: 4 months


title: SVZ_Glast_L12_naive pJ

value: vSVZ astrocyte

value: IFN(A/G)R KO


title: SVZ_Glast_L11_naive pJ


title: FAD,rep2,Pos,Plate2,B5

value: Pos


title: FAD,rep2,Pos,Plate2,B4


title: SVZ_Glast_L10_naive pJ


title: SVZ_Oligo_G24 pM


title: FAD,rep2,Pos,Plate2,B6


title: FAD,rep2,Pos,Plate2,B3


title: SVZ_Glast_K9_naive pJ


title: SVZ_Oligo_F24 pM


title: FAD,rep2,Pos,Plate2,B2


title: FAD,rep2,Pos,Plate2,C11


title: SVZ_Oligo_E24 pM


title: SVZ_Oligo_E23 pM


title: FAD,rep2,Pos,Plate2,B11


title: FAD,rep2,Pos,Plate2,B1


title: FAD,rep2,Pos,Plate2,A9

value: Adult Spinal Cord Homeostatic


title: FAD,rep2,Pos,Plate2,A7


title: FAD,rep2,Pos,Plate2,A8


title: SVZ_Oligo_D24 pM

value: striatum & ventricular-subventricular zone


title: FAD,rep2,Pos,Plate2,A6

value: Isolated Microglia


title: SVZ_Oligo_H24 pM


title: SVZ_Glast_K17_naive pJ


title: SVZ_Oligo_D23 pM


title: FAD,rep2,Pos,Plate2,A3

value: Transitional DAM


title: SVZ_Glast_K16_naive pJ


title: FAD,rep2,Pos,Plate2,A12


title: SVZ_Oligo_C24 pM


title: FAD,rep2,Pos,Plate2,B12


title: SVZ_Glast_K15_naive pJ


title: SVZ_Oligo_C23 pM


title: FAD,rep2,Pos,Plate2,A10

value: DAM 2


title: FAD,rep2,Pos,Plate2,A11


title: FAD,rep2,Pos,Plate1,H8


title: SVZ_Glast_K8_naive pJ


title: SVZ_Oligo_B24 pM


title: SVZ_Oligo_B23 pM


title: SVZ_Glast_K7_naive pJ


title: FAD,rep2,Pos,Plate1,H6


title: SVZ_Glast_K12_naive pJ


title: SVZ_Glast_K18_naive pJ


title: FAD,rep2,Pos,Plate1,H5


title: FAD,rep2,Pos,Plate1,H7


title: SVZ_Glast_K13_naive pJ


title: FAD,rep2,Pos,Plate1,H3


title: FAD,rep2,Pos,Plate1,H9


title: FAD,rep2,Pos,Plate1,H4


title: FAD,rep2,Pos,Plate2,A4


title: SVZ_Glast_K11_naive pJ


title: FAD,rep2,Pos,Plate1,H2


title: SVZ_Glast_I8 pM


title: FAD,rep2,Pos,Plate1,H12


title: SVZ_Oligo_A24 pM


title: FAD,rep2,Pos,Plate1,H11


title: SVZ_Glast_K14_naive pJ


title: SVZ_Glast_K10_naive pJ


title: SVZ_Glast_I6 pM


title: SVZ_Glast_J9_naive pJ


title: FAD,rep2,Pos,Plate1,G9


title: FAD,rep2,Pos,Plate1,H1


title: SVZ_Glast_J8_naive pJ

value: aNSC


title: FAD,rep2,Pos,Plate1,G8

value: Brain


title: SVZ_Glast_I5 pM


title: FAD,rep2,Pos,Plate1,G7


title: FAD,rep2,Pos,Plate1,G6


title: SVZ_Glast_J18_naive pJ


title: SVZ_Glast_J17_naive pJ


title: SVZ_Glast_I4 pM


title: SVZ_Glast_I3 pM


title: SVZ_Glast_I22 pM


title: SVZ_Glast_J16_naive pJ


title: FAD,rep2,Pos,Plate1,H10


title: SVZ_Glast_J15_naive pJ

value: TAP


title: FAD,rep2,Pos,Plate1,G2


title: FAD,rep2,Pos,Plate1,G11


title: FAD,rep2,Pos,Plate1,G10


title: SVZ_Glast_J14_naive pJ


title: FAD,rep2,Pos,Plate1,G4


title: SVZ_Glast_I21 pM


title: FAD,rep2,Pos,Plate1,G12


title: SVZ_Glast_I7 pM


title: SVZ_Glast_I20 pM


title: FAD,rep2,Pos,Plate1,F9


title: FAD,rep2,Pos,Plate1,F8


title: SVZ_Glast_I2 pM


title: FAD,rep2,Pos,Plate1,F5


title: FAD,rep2,Pos,Plate1,G5


title: FAD,rep2,Pos,Plate1,G3


title: SVZ_Glast_J13_naive pJ


title: SVZ_Glast_I19 pM


title: FAD,rep2,Pos,Plate1,F7


title: SVZ_Glast_J11_naive pJ


title: SVZ_Glast_I18 pM


title: FAD,rep2,Pos,Plate1,F4


title: FAD,rep2,Pos,Plate1,F2

value: IEG+


title: SVZ_Glast_I9_naive pJ


title: FAD,rep2,Pos,Plate1,F12


title: SVZ_Glast_I17 pM

value: TiCY


title: FAD,rep2,Pos,Plate1,F11


title: SVZ_Glast_I16 pM

value: neuroblast


title: FAD,rep2,Pos,Plate1,F10


title: FAD,rep2,Pos,Plate1,G1


title: FAD,rep2,Pos,Plate1,E9


title: FAD,rep2,Pos,Plate1,F3


title: SVZ_Glast_I15 pM

value: naive


title: FAD,rep2,Pos,Plate1,E8

value: MHCII+


title: SVZ_Glast_I18_naive pJ


title: SVZ_Glast_J12_naive pJ


title: SVZ_Glast_I7_naive pJ


title: FAD,rep2,Pos,Plate1,E6

value: DAM 1

value: 4 months


title: FAD,rep2,Pos,Plate1,E7


title: FAD,rep2,Pos,Plate1,E5


title: FAD,rep2,Pos,Plate1,E4


title: SVZ_Glast_I16_naive pJ

value: IFN(A/G)R KO


title: SVZ_Glast_I17_naive pJ

value: vSVZ astrocyte


title: FAD,rep2,Pos,Plate1,E3

value: Pos


title: SVZ_Glast_I13 pM

value: striatum & ventricular-subventricular zone


title: FAD,rep2,Pos,Plate1,E2

value: Isolated Microglia


title: FAD,rep2,Pos,Plate1,E12

value: Transitional DAM


title: SVZ_Glast_I15_naive pJ


title: SVZ_Glast_I8_naive pJ


title: SVZ_Glast_I12 pM


title: FAD,rep2,Pos,Plate1,E10


title: FAD,rep2,Pos,Plate1,E11


title: SVZ_Glast_I14_naive pJ


title: SVZ_Glast_I11 pM


title: SVZ_Glast_I10 pM


title: FAD,rep2,Pos,Plate1,D9


title: SVZ_Glast_I13_naive pJ


title: SVZ_Glast_I12_naive pJ


title: FAD,rep2,Pos,Plate1,D8


title: FAD,rep2,Pos,Plate1,D6


title: FAD,rep2,Pos,Plate1,D7


title: FAD,rep2,Pos,Plate1,D5


title: SVZ_Glast_I11_naive pJ


title: FAD,rep2,Pos,Plate1,D4


title: SVZ_Glast_I14 pM


title: FAD,rep2,Pos,Plate1,D3


title: SVZ_Glast_H8 pM


title: SVZ_Glast_I10_naive pJ


title: SVZ_Glast_H9 pM


title: FAD,rep2,Pos,Plate1,D2

value: Adult Brain Homeostatic


title: SVZ_Glast_I1 pM


title: FAD,rep2,Pos,Plate1,D12


title: SVZ_Glast_H9_naive pJ


title: SVZ_Glast_H7 pM


title: FAD,rep2,Pos,Plate1,D11


title: FAD,rep2,Pos,Plate1,D10


title: SVZ_Glast_H6 pM


title: SVZ_Glast_H7_naive pJ


title: FAD,rep2,Pos,Plate1,D1


title: FAD,rep2,Pos,Plate1,C8


title: FAD,rep2,Pos,Plate1,E1


title: SVZ_Glast_H5 pM


title: FAD,rep2,Pos,Plate1,C9


title: SVZ_Glast_H18_naive pJ


title: SVZ_Glast_H4 pM


title: SVZ_Glast_H3 pM


title: SVZ_Glast_H17_naive pJ


title: FAD,rep2,Pos,Plate1,C7


title: SVZ_Glast_H22 pM

value: aNSC


title: SVZ_Glast_H15_naive pJ


title: SVZ_Glast_H16_naive pJ


title: FAD,rep2,Pos,Plate1,C3

value: Brain


title: FAD,rep2,Pos,Plate1,C11


title: FAD,rep2,Pos,Plate1,C2


title: SVZ_Glast_H21 pM


title: FAD,rep2,Pos,Plate1,C1


title: SVZ_Glast_H20 pM


title: FAD,rep2,Pos,Plate1,C10


title: SVZ_Glast_H14_naive pJ


title: FAD,rep2,Pos,Plate1,B9


title: SVZ_Glast_H13_naive pJ


title: FAD,rep2,Pos,Plate1,B8


title: FAD,rep2,Pos,Plate1,B6


title: FAD,rep2,Pos,Plate1,B7


title: FAD,rep2,Pos,Plate1,B5


title: SVZ_Glast_H19 pM


title: FAD,rep2,Pos,Plate1,C6


title: FAD,rep2,Pos,Plate1,C5


title: FAD,rep2,Pos,Plate1,B3


title: SVZ_Glast_H10_naive pJ


title: SVZ_Glast_H2 pM


title: FAD,rep2,Pos,Plate1,B2


title: FAD,rep2,Pos,Plate1,B4


title: SVZ_Glast_G9_naive pJ


title: FAD,rep2,Pos,Plate1,B11


title: SVZ_Glast_H11_naive pJ


title: SVZ_Glast_H12_naive pJ


title: SVZ_Glast_H15 pM


title: SVZ_Glast_H16 pM


title: FAD,rep2,Pos,Plate1,B12


title: FAD,rep2,Pos,Plate1,B10

value: DAM 2


title: FAD,rep2,Pos,Plate1,A8


title: SVZ_Glast_G17_naive pJ


title: FAD,rep2,Pos,Plate1,A7


title: FAD,rep2,Pos,Plate1,B1


title: SVZ_Glast_H14 pM


title: FAD,rep2,Pos,Plate1,A6


title: SVZ_Glast_H18 pM


title: SVZ_Glast_H13 pM


title: SVZ_Glast_G16_naive pJ

value: TAP


title: SVZ_Glast_G15_naive pJ


title: SVZ_Glast_H12 pM

value: TiCY


title: FAD,rep2,Pos,Plate1,A4


title: FAD,rep2,Pos,Plate1,A3


title: SVZ_Glast_H17 pM


title: SVZ_Glast_G13_naive pJ


title: FAD,rep2,Pos,Plate1,A2


title: FAD,rep2,Pos,Plate1,A12


title: SVZ_Glast_H11 pM


title: FAD,rep2,Pos,Plate1,A11


title: SVZ_Glast_G12_naive pJ


title: SVZ_Glast_H10 pM


title: FAD,rep2,Pos,Plate1,A10


title: FAD,rep2,Neg,Plate2,H9

value: Neg


title: FAD,rep2,Pos,Plate1,A1


title: FAD,rep2,Neg,Plate2,H8


title: SVZ_Glast_G10_naive pJ

value: naive


title: SVZ_Glast_G11_naive pJ


title: FAD,rep2,Neg,Plate2,H6


title: FAD,rep2,Pos,Plate1,A5


title: FAD,rep2,Neg,Plate2,H3


title: FAD,rep2,Neg,Plate2,H4


title: SVZ_Glast_G6 pM


title: FAD,rep2,Neg,Plate2,H5


title: SVZ_Glast_F9_naive pJ


title: SVZ_Glast_G9 pM


title: SVZ_Glast_F8_naive pJ


title: FAD,rep2,Neg,Plate2,H2


title: FAD,rep2,Neg,Plate2,H11


title: SVZ_Glast_G5 pM


title: SVZ_Glast_F7_naive pJ


title: SVZ_Glast_F17_naive pJ


title: SVZ_Glast_G4 pM


title: FAD,rep2,Neg,Plate2,G9


title: SVZ_Glast_G3 pM


title: FAD,rep2,Neg,Plate2,H1


title: FAD,rep2,Neg,Plate2,G7


title: SVZ_Glast_F16_naive pJ


title: SVZ_Glast_H1 pM


title: FAD,rep2,Neg,Plate2,G6


title: SVZ_Glast_G22 pM


title: SVZ_Glast_F15_naive pJ


title: FAD,rep2,Neg,Plate2,G5


title: SVZ_Glast_G21 pM

value: neuroblast


title: FAD,rep2,Neg,Plate2,G3


title: FAD,rep2,Neg,Plate2,G4


title: FAD,rep2,Neg,Plate2,G2


title: SVZ_Glast_G20 pM


title: FAD,rep2,Neg,Plate2,G12


title: FAD,rep2,Neg,Plate2,H10


title: SVZ_Glast_F12_naive pJ


title: SVZ_Glast_G2 pM


title: SVZ_Glast_F13_naive pJ


title: SVZ_Glast_G19 pM


title: SVZ_Glast_F11_naive pJ


title: FAD,rep2,Neg,Plate2,F6


title: FAD,rep2,Neg,Plate2,F9


title: FAD,rep2,Neg,Plate2,F8


title: FAD,rep2,Neg,Plate2,F5


title: FAD,rep2,Neg,Plate2,F4

value: DAM 1


title: FAD,rep2,Neg,Plate2,F3

value: 4 months


title: SVZ_Glast_G17 pM


title: FAD,rep2,Neg,Plate2,F12


title: SVZ_Glast_F10_naive pJ

value: IFN(A/G)R KO


title: FAD,rep2,Neg,Plate2,G11