title: KRW_5816_DP

description:
16-week PTEN KO mouse
KRW_5816_DP

data_processing:
FASTQ files from sequencing were quality controlled and adapter trimmed using FASTQC (v0.11.5) and mapped to MM10 reference genome using the STAR aligner (v2.5.0a). Putative PCR duplicates were marked and removed with SAMtools (v1.7) for downstream analysis. Gene expression levels were determined by the number of fragments per kilobase per million reads (FPKM). Briefly, reads overlapping exonic regions of UCSC MM10 known genes were determined using the ‘summarizeOverlaps’ function of the ‘GenomicAlignments’ (v1.20.1) package in the R/Bioconductor (v3.6.1).
Assembly: mm10
Supplementary files format and content: tab-delimited text files include FPKM values for each Sample .

source_name: dorsal prostates (DP)

extract_protocol:
Mouse prostates with indicated genotype were freshly collected in Trizol reagent for RNA isolation
RNA libraries were prepared for sequencing using standard Illumina protocols

value: Prostates

value: dorsal prostates (DP)

value: KRW

tag: strain background


title: WW_5831_DP

status: Public on Jun 24 2024

type: SRA

city: Shenzhen

first: Jin-Tang

last: Dong

state: Guangdong

address: 1088 Xueyuan Blvd

department: Human Cell Biology and Genetics

country: China

institute: Southern University of Science and Technology

description:
16-week PTEN KO mouse
WW_5831_DP

library_source: transcriptomic

molecule: total RNA

organism: Mus musculus

tag: tissue

tag: genotype

value: WW


title: WW_5834_DP

description:
16-week PTEN KO mouse
WW_5834_DP


title: KRW_5696_DP

description:
16-week PTEN KO mouse
KRW_5696_DP


title: KRKR_5763_DP

description:
16-week PTEN KO mouse
KRKR_5763_DP

value: KRKR


title: GFP_LD_LCM_2

city: Halle

first: Markus

last: Glaß

address: Kurt-Mothes-Str. 3a

department: Institute of Molecular Medicine

country: Germany

institute: Martin Luther University Halle-Wittenberg

data_processing:
Trimmed reads were mapped against the mouse reference (mm39 UCSC) using HiSat2 (v 2.1.0) with parameters --dta --strandness RF -k 5
secondary alignments were filtered out using samtools (v 1.10)
Mapped reads were summarized using featureCounts (v 2.0.0) with parameters -p -s 2 -M -t exon -g gene_id and Ensembl gene annotations (GRCm39.105)
Assembly: mm39
Supplementary files format and content: Comma-separated text file containing raw count values for each sample

molecule: polyA RNA

source_name: murine keratinocytes

extract_protocol:
RNA extraction was performed using TRIZOL according to manufacturer's protocol.
Library preparation (Poly(A) tail RNA selection) and strand-specific RNA sequencing (total RNA amount ≥ 2 µg) was performed by LC Sciences (Houston, USA).

treatment_protocol: Cells grown in low calcium medium (= LCM) for 24h (= LD)

tag: cell type

value: murine keratinocytes

value: GFP-PKP4-tagged Pkp4-knockout

tag: treatment


title: KRKR_5759_DP

description:
16-week PTEN KO mouse
KRKR_5759_DP


title: KRKR_5762_DP

description:
16-week PTEN KO mouse
KRKR_5762_DP


title: WW_5831_AP

description:
16-week PTEN KO mouse
WW_5831_AP

source_name: anterior prostates (AP)

value: anterior prostates (AP)


title: KRW_5764_AP

description:
16-week PTEN KO mouse
KRW_5764_AP


title: WW_5834_AP

description:
16-week PTEN KO mouse
WW_5834_AP


title: KRKR_5760_DP

description:
16-week PTEN KO mouse
KRKR_5760_DP


title: KRW_5696_AP

description:
16-week PTEN KO mouse
KRW_5696_AP


title: KRKR_5763_AP

description:
16-week PTEN KO mouse
KRKR_5763_AP


title: KRW_5816_AP

description:
16-week PTEN KO mouse
KRW_5816_AP


title: KRKR_5762_AP

description:
16-week PTEN KO mouse
KRKR_5762_AP


title: KRKR_5759_AP

description:
16-week PTEN KO mouse
KRKR_5759_AP


title: B1,HHL(n=6),scRNAseq

city: Xi 'an

first: Yihong

last: Jiang

state: Shaanxi

address: West Changle Road, Xincheng District

department: Center of Clinical Aerospace Medicine, School of Aerospace Medicine

institute: Air Force Medical University

description: C57BL/6J mice in the HHL group were exposed to 110 dB of noise for 2 hours,The cochlea was taken 6 hours after the last noise exposure.

library_source: transcriptomic single cell

data_processing:
Data Processing of Single-cell RNA-seq from Chromium System
Unsupervised clustering and visualization
Marker gene identification and cell-type annotation
Assembly: GRCm39
Supplementary files format and content: matrix files

source_name: cochlea

extract_protocol:
For the quality check and counting of single cell suspension, the cell survival rate is generally above 80%. The cells that have passed the test are washed and resuspended to prepare a suitable cell concentration of 700~1200 cells/ul for 10x Genomics ChromiumTM. The system is operated on the machine.
The 3ʹ Gene Expression Library was constructed with the quality-qualified cDNA. After fragmentation, adaptor ligation, sample index PCR, etc., the library is finally quantitatively examined.

treatment_protocol: C57BL/6J mice in the HHL group were exposed to 110 dB of noise for 2 hours, and those in the NIHL group were exposed to 115 dB of noise for 4 hours for 3 days. The cochlea was taken 6 hours after the last noise exposure. The control group was not exposed to noise, with other conditions being the same as those in the noise-exposed group.

value: cochlea

tag: group

value: HHL


title: KRKR_5760_AP

description:
16-week PTEN KO mouse
KRKR_5760_AP


title: C1,NIHL (n=6),scRNAseq

description: C57BL/6J mice in the NIHL group were exposed to 115 dB of noise for 4 hours for 3 days,The cochlea was taken 6 hours after the last noise exposure.

value: NIHL


title: A1,Control(n=6),scRNAseq

description: The control group was not exposed to noise, with other conditions being the same as those in the noise-exposed group.

value: control


title: WW_5705_DP

description:
16-week PTEN KO mouse
WW_5705_DP


title: VEGF/LysM, replicate3, bulk RNAseq

city: Zurich

first: Zheng

last: Fan

address: Winterthurerstrasse 190

department: Anatomy Institute

country: Switzerland

institute: University of Zurich

data_processing:
For bulk RNAseq, sequenced data were processed using Kallisto to generate a count file matrix for each individual sample. Samples were pooled together on a single dataset for downstream analysis and genes with one count or less across all samples were filtered out. Variance stabilizing transformation (VST) for negative binomial data with a dispersion-mean trend was used for exploratory analysis such as PCA and identification of highly variable genes. Following DESeq2 (version 1.36.0) analysis workflow69, differential expression analysis was performed on the raw counts after estimation of size factors (controlling for differences in the sequencing depth of the samples), the estimation of dispersion values for each gene and fitting a generalized linear model.
Assembly: mm10
Supplementary files format and content: csv

source_name: Adrenal gland

extract_protocol:
Fresh isolated adrenal glands were lysed with 350 μl RNA lysis buffer, and RNA extraction was performed using RNeasy Plus Micro Kit (74034 QIAGEN). RNA quality test was performed by Agilent High Sensitivity RNA ScreenTape System (G2964AA). Samples with RNA Integrity Number (RIN) ≥ 8.0 were further analyzed.
Bulk RNA-seq libraries were obtained following the Smartseq II recommended protocol.

value: Adrenal gland


title: WT, replicate2, bulk RNAseq


title: VEGF/LysM, replicate2, bulk RNAseq


title: WT, replicate1, bulk RNAseq


title: VEGF/LysM, replicate1, bulk RNAseq


title: KRW_5764_DP

description:
16-week PTEN KO mouse
KRW_5764_DP


title: WT, replicate3, bulk RNAseq


title: MEF 1#

city: Hangzhou

first: Chengchen

last: Zhao

state: Zhejiang

address: Dunyu Road No.600, Xihu District

institute: Westlake University

description:
iPSC_Transcript_fpkm.txt
GeneSymbol_fpkm.txt

data_processing:
The RNA-seq reads were trimmed using Trim Galore (v0.6.4)  and then mapped to the mm10 reference genome with HISAT2 (v2.2.1) , and StringTie (v2.2.1)  was used to quantify the transcription level of each gene in each sample into FPKM (Fragments per kilobase of exon model per million mapped reads). GFOLD (v1.1.4) was used to perform differential expression analysis between conditions. The differentially expressed genes were identified with gfold value > 0.5.
Assembly: mm10
Supplementary files format and content: expression matrix(FPKM)

source_name: MEF

extract_protocol:
RNA was harvested using FreeZol reagent (Vazyme),1 µg of RNA was used for sequencing libraries construction
Liarbries were constructed by VAHTS mRNA-seq v3 Library Prep Kit for Illumina (NR611, Vazyme)

tag: cell line

value: MEF

value: mouse embryonic fibroblast


title: Nanog+Oct4 iPSC1 3#

source_name: iPSC

value: iPSC

value: mouse iuduced pluriptent stem cell

tag: reprogramming

value: Nanog+Oct4 iPSC1


title: Nanog+Oct4 iPSC2 5#

value: Nanog+Oct4 iPSC2


title: MEF 2#


title: WW_5705_AP

description:
16-week PTEN KO mouse
WW_5705_AP

value: Prostates


title: NanogN70+Oct4 iPSC2 1#

value: NanogN70+Oct4 iPSC2


title: Nanog+Oct4 iPSC1 1#-2


title: Nanog+Oct4 iPSC1 1#


title: Nanog+Oct4, Day12, Rep2

tag: time point


title: NanogN70+Oct4 iPSC2 3#


title: Nanog+Oct4, Day5, Rep2


title: NanogN70+Oct4 iPSC2 2#


title: Nanog+Oct4, Day8, Rep2


title: NanogN70+Oct4 iPSC1 8#

value: NanogN70+Oct4 iPSC1


title: NanogN70+Oct4 iPSC1 9#


title: Nanog+Oct4 iPSC1 2#


title: Nanog+Oct4, Day10, Rep2


title: Nanog+Oct4, Day1, Rep2


title: NanogN70+Oct4 iPSC1 4#


title: Nanog+Oct4, Day3, Rep2


title: OG2-mES

source_name: mES

value: mES

value: Mouse embryonic stem cell


title: Nanog+Oct4, Day0, Rep2


title: NanogN70+Oct4, Day10, Rep2


title: Nanog+Oct4, Day7, Rep2


title: NanogN70+Oct4, Day7, Rep2


title: Nanog+Oct4 iPSC2 6#


title: NanogN70+Oct4, Day3, Rep2


title: NanogN70+Oct4, Day5, Rep2


title: NanogN70+Oct4, Day1, Rep2


title: NanogN70+Oct4, Day12, Rep2


title: Nanog+Oct4, Day12, Rep1


title: NanogN70+Oct4, Day0, Rep2


title: Nanog+Oct4, Day7, Rep1


title: Nanog+Oct4, Day8, Rep1


title: Nanog+Oct4, Day3, Rep1


title: Nanog+Oct4, Day5, Rep1


title: Nanog+Oct4, Day10, Rep1


title: Nanog+Oct4, Day0, Rep1


title: Nanog+Oct4, Day1, Rep1


title: NanogN70+Oct4, Day12, Rep1


title: NanogN70+Oct4, Day10, Rep1


title: NanogN70+Oct4, Day7, Rep1


title: NanogN70+Oct4, Day8, Rep1


title: NanogN70+Oct4, Day3, Rep1


title: NanogN70+Oct4, Day5, Rep1


title: NanogN70+Oct4, Day1, Rep1


title: Nanog+Oct4, Smarca4 (Brg1), Day5

library_source: genomic

data_processing:
CUT&Tag library construction was performed using Hyperactive InSitu ChIP Library Prep Kit for Illumina (pG-Tn5) (Vazyme, TD901) and TruePrep Index Kit V2 for Illumina (Vazyme, TD202). In brief, around 10000 living cells per sample were obtained and mixed with activated Concanavalin A beads, followed by sequentially incubated with primary and secondary antibodies. The beads were then washed and resuspended in pA(G)-Tn5 buffer supplemented with 10 mM MgCl2 for DNA tagmentation. Next, DNA fragments were indexed using TruePrep Index Kit V2 for Illumina (Vazyme, TD202) and PCR amplified. After purified by VAHTS DNA Clean Beads (Vazyme, N411), libraries were subjected to Illumina Novaseq instruments for sequencing. Antibodies against Nanog (Abcam, ab214549, 1:50), H3K4me (Abcam, ab313500, 1:50), H3K27ac (Abcam, ab4729, 1:50), flag (Sigma, F1804, 1:50), and Smarca4 (Cell Signaling Technology, 52251, 1:50) were used in this study.
The CUT&Tag reads were trimmed by Trim Galore (v0.6.4) and then mapped to the mm10 reference genome using bowtie2 (v2.4.5). SAMtools (v1.16.1) was used to remove the repetitive, low sequencing quality (mapq<30) and the mitochondrial DNA mapped reads in the total mapped reads. The value were further compressed into a binary format for downstream analysis and data visualization. Replicates were merged using samtools merge and then peak calling was performed using MACS (v1.4.2) with parameters as follows: -g mm --keep-dup 1 --nomodel --shiftsize 25. The signals were normalized to one million reads for each sample. Promoters were defined as regions ± 2 kb around transcription start sites (TSSs) of genes.
Assembly: mm10
Supplementary files format and content: BigWig, Peaks&Summits bed
Library strategy: CUT&Tag

molecule: genomic DNA

extract_protocol:
DNA was harvested using Hyperactive InSitu ChIP Library Prep Kit for Illumina (pG-Tn5) (Vazyme, TD901), 100000 cells per sample was used for sequencing libraries construction
Liarbries were constructed by Hyperactive InSitu ChIP Library Prep Kit for Illumina (pG-Tn5) (Vazyme, TD901) and TruePrep Index Kit V2 for Illumina (Vazyme, TD202).

tag: chip antibody

value: Smarca4 (Brg1)


title: NanogN70+Oct4, Day0, Rep1


title: NanogN70+Oct4, Nanog-Flag, Day5

value: Flag


title: Nanog+Oct4, Nanog-Flag, Day5


title: NanogN70+Oct4, H3K27ac, Day5


title: Nanog+Oct4, H3K27ac, Day5


title: NanogN70+Oct4, Smarca4 (Brg1), Day5


title: Nanog+Oct4, H3K4me1, Day5


title: NanogN70+Oct4, H3K4me1, Day5


title: NanogN70+Oct4, Day10

data_processing:
ATAC-seq was performed according to the previous study (Buenrostro et al., 2013, Buenrostro et al., 2015a). Briefly, a total of 50,000 cells were collected and incubated with 50 μL lysis buffer (10 mM Tris-HCl pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.2% (v/v) IGEPAL CA-630) for 10 min on ice. The suspension of nuclei was centrifuged for 5 min at 500g at 4 °C, then resuspended in 50 μl transposition reaction mix (10 μl 5× TTBL, 5 μl TTE Mix V50 and 35 μl nuclease-free H2O) from the TruePrep DNA Library Prep Kit V2 for Illumina (TD501-TD503, Vazyme), and incubated at 37 °C for 30 min. DNA fragments were then PCR amplified and purified with a Qiaquick PCR (QIAGEN) column. Library concentration was detected by a VAHTS Human Genomic DNA Quantification and QC Kit (NQ201, Vazyme) according to the manufacturer’s protocol. Finally, libraries were indexed using TruePrep Index Kit V2 for Illumina (Vazyme, TD202), and sequencing was performed on Illumina Novaseq PE150 platform.
The ATAC-seq reads were trimmed by Trim Galore (v0.6.4) and then mapped to the mm10 reference genome using bowtie2 (v2.4.5), and SAMtools (v1.16.1) was used to remove the repetitive, low sequencing quality (mapq<30) and the mitochondrial DNA mapped reads in the total mapped reads. In order to make the data comparable between different sequencing depths, the signals were normalized to one million reads for each sample, and the value were further compressed into a binary format (bigWig) for downstream analysis and data visualization. Peak calling was performed using MACS (v1.4.2) with parameters as follows: -g mm --keep-dup all --nomodel --shiftsize 25.
Assembly: mm10
Supplementary files format and content: BigWig, Peaks&Summits bed

extract_protocol:
DNA was harvested using TruePrep DNA Library Prep Kit V2 for Illumina kit (TD501-TD503, Vazyme),100000 cells per sample was used for sequencing libraries construction
Liarbries were constructed by TruePrep DNA Library Prep Kit V2 for Illumina (TD501-TD503, Vazyme)

value: Mouse embryonic fibroblast


title: NanogN70+Oct4, Day8


title: NanogN70+Oct4, Day7


title: NanogN70+Oct4, Day1


title: NanogN70+Oct4, Day3


title: NanogN70+Oct4, Day5


title: NanogN70+Oct4, Day0


title: NanogN70+Oct4, Day12


title: Nanog+Oct4, Day7


title: Nanog+Oct4, Day8


title: Nanog+Oct4, Day12


title: Nanog+Oct4, Day5


title: Nanog+Oct4, Day1


title: Nanog+Oct4, Day3


title: Nanog+Oct4, Day0


title: ESC_rep3


title: ESC_rep1


title: RO

city: New York

first: Hans-Willem

last: Snoeck

state: NY

address: 650 west 168th street

country: USA

institute: Columbia University Irving Medical Centre

description: 10x Genomics

data_processing:
The demultiplexing, barcoded processing, gene counting and aggregation were made using the cell ranger version 5.0.1 for each sample
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files

source_name: blood

extract_protocol:
HSCs in suspension cultured in RO-3066 and DMSO were collected for scRNA sequencing
Sequencing libraries were prepared using 10x Genomics Single Cell Gene Expression 3’ workflow

value: blood

value: hematopoietic stem cells


title: DMSO

description: 10x Genomics

value: DMSO


title: WT_Cre_2

city: Potsdam

first: Radoslaw

last: Lukoszek

address: Karl-Liebknecht-Strasse 24-25

institute: University of Potsdam

data_processing:
Sequencing was performed with a read length of 2×150 bp using a high output kit on Illumina NextSeq 500
The quality of sequencing reads was checked using FastQC and the adaptors were trimmed using Cutadapt (Martin, 2011)
The trimmed reads were aligned to the mouse genome assembly GRCm38/mm10 using STAR
The PCR duplicates from the mapped reads were removed using Picard (Wysoker et al., 2013)
Each reads per gene was quantified using htseq (Anders et al., 2015)
Assembly: mm10
Supplementary files format and content: Each reads per gene file contains a tab delimited table of reads per gene counted, the first column indicates the ensembl gene id, the second column shows the read count

source_name: mouse embryonic fibroblasts (immortalised)

growth_protocol: Mouse embryonic fibroblasts were grown in Dulbecco's Minimum Essential Medium supplemented with 10% Fetal Bovine Serum, 100U/mL penicillin, 100µg/mL streptomycin and 0.5mg/mL G418. MEFs were cultured at 37 °C with 5 % CO2.

extract_protocol:
Total RNA was extracted using GeneJET RNA Purification Kit (ThermoFisher Scientific)
Sequencing libraries were prepared by Novogene using ribosomal RNA depletion. The libraries were sequenced by Novogene using NovaSeq 6000.

treatment_protocol: Cell were transfected with vector encoding EF1α::Cre-GFP and selected with 2µg/mL of puromycin after 24h for 48h. Cell were allowed to recover for 7 days prior to RNA extraction.

value: transduced with WT version of human HA-tagged CMTR1

tag: agent

value: transfected with vector encoding EF1alpha::Cre-GFP

value: embryonic fibroblasts


title: WT_Cre_3


title: WT_Cre_4


title: EV_Cre_4

value: transduced with empty vector control


title: EV_Cre_3


title: EV_Cre_2


title: 15A_Cre_4

value: transduced with phosphorylation deficient version of human HA-tagged CMTR1 (15A)


title: Nanog+Oct4, Day10

value: MEF


title: WT_Cre_1


title: 15A_Cre_1


title: 15A_Cre_2


title: BDF1_in-vitro_G1_08-cell_P445_31

city: Kobe

first: Hirohisa

last: Kyogoku

state: Hyogo

address: 1-1, Rokkodai-chou

department: Agricultural Science

country: Japan

institute: Kobe university

data_processing:
Two-step adapter trimming was performed to first remove the Illumina adapter and the SEQXE adapter.
Trimmed fastq files were aligned to mm9 or a constructed B6/MSM specific diploid genome (Takahashi et al., 2019) for non-haplotype or haplotype-resolved analysis, respectively.
Genome coordinates of allele-specific uniquely mapped reads (MAPQ >16) were converted to mm9 by liftOver tool (UCSC Genome Browser). Duplicated reads were filtered out.
For quality control of scRepli-seq data, we applied median-absolute-deviation (MAD) score evaluation to filter out cells with problematic RT (MAD scores = 0 or >1.0).
For generating log2[(mappability-corrected S-phase reads)/median] scores (log2median RT score) to obtain single-cell RT profiles using cells that passed MAD score evaluation, we counted the reads in sliding windows of 1-Mb at 200-kb intervals, 200-kb at 40-kb intervals, or 1-Mb at 200-kb intervals (haplotype-resolved analysis for B6MSM)  after normalizing S-phase data with AneuFinder’s correctMappability command based on G1 control without karyotype defects in each strain. (Miura et al., 2020).
The binarization for each 80-kb (non-haplotype) or 400-kb (haplotype-resolved analysis for B6MSM) was performing find CNVs command in AneuFinder (Miura et al., 2020). For 4-cell, we applied 1-somy mode for early S-phase, and 2-somy mode for mid/late S-phase. Other stages including 1-, 2-cell, we applied 2-somy mode for binarization. Repliscore as a percentage of replicated bins in the total number of replicated and unreplicated bins was calculated from binarized scRepli-seq data without X chromosome (Miura et al., 2020).
Assembly: mm9
Supplementary files format and content: log2median RT score (log2med.txt)
Supplementary files format and content: Binary data (binary.txt)
Library strategy: Single-cell Repli-seq

source_name: embryo

growth_protocol: Developmental conditions for embryos, (1) in vitro: Embryos were cultured in Chatot, Ziomek, and Bavister medium (CZB). (2) in vivo: In vivo development zygotes and embryos were collected from the oviducts of pregnant mice that had been induced to superovulate and mated with male mice. Embryos within 1 to 2 hours after cytokinesis were classified as G1.

extract_protocol:
Single-cell isolation: Collection of single blastomeres was performed using micromanipulation. Embryos were transferred into M2 medium supplemented with 5 μg/ml cytochalasin B (Sigma-Aldrich) for 10 min. Then, the zona pellucida was cut by the LYKOS laser system (Hamilton Thorne) in a micromanipulation chamber, which was put on a warmed stage (37°C) in an inverted microscope (Olympus Co.). After cutting the zona pellucida, a fire-polished injection pipette (inner dia. 30 µm) was inserted through the hole of the zona pellucida, single blastomere was isolated. For late 8-cell and 16-cell stage embryos, embryos were treated with TrypLE Express (gibco) for 5 min before single-cell isolation. TE and ICM cells were isolated described previously (Xu et al., 2013) and microsurgical isolation to single cell was performed by micromanipulator.  After the single-cell isolation, sample preparations were performed as described (Miura et al., 2020).
DNA samples were subject to whole-genome amplification (WGA) with a SeqPlex kit (Sigma, SEQXE). NGS libraries were constructed WGA DNA with an NGS LTP Library Preparation Kit (KAPA, KK8232) according to the manufacturer’s instructions

treatment_protocol: Treatments for embryos, (1) IVF or ICSI: For IVF was performed according to the manufacturer's instructions using CARD MEDIUM (Cosmo Bio). To limit the time of fertilization, the insemination time was 1 hour. ICSI with sperm heads was carried out as described previously (Kyogoku et al., 2018). (2) SCNT: SCNT was performed as described previously (Kyogoku et al., 2018). (3) EdU labeling: in-vitro developed embryos were treated with 20 µM EdU for 30 min and tripsynized into single-cells. Cells were fixed in 3.7% paraformaldehyde in phosphate-buffered saline (PBS) for 30 min. EdU staining was performed using Click-iT Plus EdU Alexa Flour 594 Imaging Kit. Each labeled single-cell was collected by mouth pipette under the microscopy.

tag: strain

value: embryo

tag: developmental stage

tag: developmental condition

value: in vitro


title: BDF1_in-vitro_G1_08-cell_P445_29


title: ESC_rep2


title: BDF1_in-vitro_G1_08-cell_P445_28


title: BDF1_in-vitro_G1_08-cell_P445_27


title: 15A_Cre_3


title: BDF1_in-vitro_G1_08-cell_P445_30


title: MEF


title: BDF1_in-vitro_G1_08-cell_P445_32


title: BDF1_in-vitro_G1_08-cell_P445_25


title: BDF1_in-vitro_G1_08-cell_P445_23


title: BDF1_in-vitro_G1_08-cell_P445_24


title: BDF1_in-vitro_G1_08-cell_P445_20


title: BDF1_in-vitro_G1_08-cell_P445_22


title: BDF1_in-vitro_G1_08-cell_P445_21


title: BDF1_in-vitro_G1_08-cell_P445_26


title: EV_Cre_1


title: BDF1_in-vitro_G1_08-cell_P445_17


title: BDF1_in-vitro_G1_08-cell_P445_16


title: BDF1_in-vitro_G1_08-cell_P445_15


title: BDF1_in-vitro_G1_08-cell_P445_18


title: BDF1_in-vitro_G1_08-cell_P445_19


title: BDF1_in-vitro_G1_08-cell_P445_13


title: BDF1_in-vitro_G1_08-cell_P445_10


title: BDF1_in-vitro_G1_08-cell_P445_12


title: BDF1_in-vitro_G1_08-cell_P445_11


title: BDF1_in-vitro_G1_08-cell_P445_14


title: BDF1_in-vitro_G1_08-cell_P445_09


title: SCNT_08-cell_DEP_01_164_46

data_processing:
*library strategy: Single-cell Repli-seq
Two-step adapter trimming was performed to first remove the Illumina adapter and the SEQXE adapter.
Trimmed fastq files were aligned to mm9 or a constructed B6/MSM specific diploid genome (Takahashi et al., 2019) for non-haplotype or haplotype-resolved analysis, respectively.
Genome coordinates of allele-specific uniquely mapped reads (MAPQ >16) were converted to mm9 by liftOver tool (UCSC Genome Browser). Duplicated reads were filtered out.
For quality control of scRepli-seq data, we applied median-absolute-deviation (MAD) score evaluation to filter out cells with problematic RT (MAD scores = 0 or >1.0).
The binarization for each 80-kb was performing find CNVs command in AneuFinder (Miura et al., 2020). We applied 2-somy mode for binarization. Repliscore as a percentage of replicated bins in the total number of replicated and unreplicated bins was calculated from binarized scRepli-seq data without X chromosome (Miura et al., 2020).
Assembly: mm9
Supplementary files format and content: Binary data
Supplementary files format and content: Sample metadata

growth_protocol: Developmental conditions for embryos (in vitro): Embryos were cultured in Chatot, Ziomek, and Bavister medium (CZB). Embryos within 1 to 2 hours after cytokinesis were classified as G1.

extract_protocol:
Single-cell isolation: Collection of single blastomeres was performed using micromanipulation. Embryos were transferred into M2 medium supplemented with 5 μg/ml cytochalasin B (Sigma-Aldrich) for 10 min. Then, the zona pellucida was cut by the LYKOS laser system (Hamilton Thorne) in a micromanipulation chamber, which was put on a warmed stage (37°C) in an inverted microscope (Olympus Co.). After cutting the zona pellucida, a fire-polished injection pipette (inner dia. 30 µm) was inserted through the hole of the zona pellucida, single blastomere was isolated. For late 8-cell and 16-cell stage embryos, embryos were treated with TrypLE Express (gibco) for 5 min before single-cell isolation. TE and ICM cells were isolated described previously (Xu et al., 2013) and microsurgical isolation to single cell was performed by micromanipulator. After the single-cell isolation, sample preparations were performed as described (Miura et al., 2020).
DNA samples were subject to whole-genome amplification (WGA) with a SeqPlex kit (Sigma, SEQXE). NGS libraries were constructed WGA DNA with an NGS LTP Library Preparation Kit (KAPA, KK8232) according to the manufacturer’s instructions

treatment_protocol: Treatments for embryos (SCNT): SCNT was performed as described previously (Kyogoku et al., 2018)

value: SCNT


title: SCNT_08-cell_DEP_01_164_45


title: SCNT_08-cell_DEP_01_164_44


title: SCNT_08-cell_DEP_01_164_42


title: SCNT_08-cell_DEP_01_164_41


title: SCNT_08-cell_DEP_01_164_34


title: SCNT_08-cell_DEP_01_164_39


title: SCNT_08-cell_DEP_01_164_35


title: SCNT_08-cell_DEP_01_164_43


title: SCNT_08-cell_DEP_01_164_38


title: SCNT_08-cell_DEP_01_164_37


title: SCNT_08-cell_DEP_01_164_33


title: SCNT_08-cell_DEP_01_164_18


title: SCNT_08-cell_DEP_01_164_32


title: SCNT_08-cell_DEP_01_164_25


title: SCNT_08-cell_DEP_01_164_31


title: SCNT_08-cell_DEP_01_164_16


title: SCNT_08-cell_DEP_01_164_22


title: SCNT_08-cell_DEP_01_164_17


title: SCNT_08-cell_DEP_01_164_15


title: SCNT_08-cell_DEP_01_164_13


title: SCNT_08-cell_DEP_01_164_09


title: SCNT_08-cell_DEP_01_164_08


title: SCNT_08-cell_DEP_01_162_33


title: SCNT_08-cell_DEP_01_162_35


title: SCNT_08-cell_DEP_01_164_40


title: SCNT_08-cell_DEP_01_162_34


title: SCNT_08-cell_DEP_01_162_37


title: SCNT_08-cell_DEP_01_162_32


title: SCNT_08-cell_DEP_01_162_29


title: SCNT_08-cell_DEP_01_162_26


title: SCNT_08-cell_DEP_01_162_25


title: SCNT_08-cell_DEP_01_164_19


title: SCNT_08-cell_DEP_01_162_28


title: SCNT_08-cell_DEP_01_162_24


title: SCNT_08-cell_DEP_01_162_18


title: SCNT_08-cell_DEP_01_162_22


title: SCNT_08-cell_DEP_01_162_14


title: SCNT_08-cell_DEP_01_162_10


title: SCNT_08-cell_DEP_01_164_14


title: SCNT_08-cell_DEP_01_162_21


title: SCNT_08-cell_DEP_01_162_13


title: SCNT_08-cell_DEP_01_162_07


title: SCNT_08-cell_DEP_01_164_12


title: SCNT_08-cell_DEP_01_162_31


title: SCNT_08-cell_DEP_01_162_12


title: SCNT_08-cell_DEP_01_162_09


title: SCNT_04-cell_mEmb04C_7H


title: SCNT_04-cell_mEmb04C_7A


title: SCNT_04-cell_mEmb04C_7G


title: SCNT_04-cell_mEmb04C_10


title: SCNT_04-cell_mEmb04C_7F


title: SCNT_04-cell_mEmb04C_11


title: SCNT_04-cell_mEmb04C_6H


title: SCNT_08-cell_DEP_01_162_08


title: SCNT_04-cell_mEmb04C_7E


title: SCNT_04-cell_mEmb04C_6E


title: SCNT_04-cell_mEmb04C_8B


title: SCNT_04-cell_mEmb04C_6C


title: SCNT_04-cell_DEP_01_164_64


title: SCNT_04-cell_DEP_01_164_62


title: SCNT_04-cell_DEP_01_164_61


title: SCNT_04-cell_DEP_01_164_60


title: SCNT_04-cell_DEP_01_164_57


title: SCNT_04-cell_DEP_01_164_58


title: SCNT_04-cell_DEP_01_164_59


title: SCNT_08-cell_DEP_01_162_11


title: SCNT_04-cell_DEP_01_164_54


title: SCNT_04-cell_DEP_01_164_49


title: SCNT_04-cell_DEP_01_164_48


title: SCNT_04-cell_DEP_01_162_06


title: SCNT_04-cell_DEP_01_162_05


title: SCNT_04-cell_DEP_01_162_03


title: SCNT_04-cell_DEP_01_162_01


title: SCNT_04-cell_DEP_01_162_04


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_73

data_processing:
*library strategy: Single-cell Repli-seq
Two-step adapter trimming was performed to first remove the Illumina adapter and the SEQXE adapter.
Trimmed fastq files were aligned to mm9 or a constructed B6/MSM specific diploid genome (Takahashi et al., 2019) for non-haplotype or haplotype-resolved analysis, respectively.
Genome coordinates of allele-specific uniquely mapped reads (MAPQ >16) were converted to mm9 by liftOver tool (UCSC Genome Browser). Duplicated reads were filtered out.
For quality control of scRepli-seq data, we applied median-absolute-deviation (MAD) score evaluation to filter out cells with problematic RT (MAD scores = 0 or >1.0).
For generating log2[(mappability-corrected S-phase reads)/median] scores (log2median RT score) to obtain single-cell RT profiles using cells that passed MAD score evaluation, we counted the reads in sliding windows of 1-Mb at 200-kb intervals or 200-kb at 40-kb intervals after normalizing S-phase data with AneuFinder’s correctMappability command based on G1 control without karyotype defects in each strain. (Miura et al., 2020).
Assembly: mm9
Supplementary files format and content: log2median RT score
Supplementary files format and content: Sample metadata

growth_protocol: Developmental conditions for embryos, in vitro: Embryos were cultured in Chatot, Ziomek, and Bavister medium (CZB).

extract_protocol:
Single-cell isolation: Collection of single blastomeres was performed using micromanipulation. Embryos were transferred into M2 medium supplemented with 5 μg/ml cytochalasin B (Sigma-Aldrich) for 10 min. Then, the zona pellucida was cut by the LYKOS laser system (Hamilton Thorne) in a micromanipulation chamber, which was put on a warmed stage (37°C) in an inverted microscope (Olympus Co.). After cutting the zona pellucida, a fire-polished injection pipette (inner dia. 30 µm) was inserted through the hole of the zona pellucida, single blastomere was isolated. After the single-cell isolation, sample preparations were performed as described (Miura et al., 2020).
DNA samples were subject to whole-genome amplification (WGA) with a SeqPlex kit (Sigma, SEQXE). NGS libraries were constructed WGA DNA with an NGS LTP Library Preparation Kit (KAPA, KK8232) according to the manufacturer’s instructions

treatment_protocol: Treatments for embryos, (1)  in vivo from the oviduct: [In vivo development zygotes were collected from the oviducts of pregnant mice that had been induced to superovulate and mated with male mice.] (2) Treatment: 4-cell embryos were treated with DMSO (without aphidicolin) or aphidicolin (75 ng/ml) during 4-cell stage. Each single-cell of 8-cell embryos was collected by mouth pipette under the microscopy.

value: Aphidicolin


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_70


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_68


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_69


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_65


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_66


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_67


title: SCNT_04-cell_mEmb04C_6A


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_63


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_72


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_62


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_61


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_64


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_60


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_57


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_58


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_55


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_54


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_56


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_53


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_52


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_51


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_50


title: SCNT_04-cell_DEP_01_162_02


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_49


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_71


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_47


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_48


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_46


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_45


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_44


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_41


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_39


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_38


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_42


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_37


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_59


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_35


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_32


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_34


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_33


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_31


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_30


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_29


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_28


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_27


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_26


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_24


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_25


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_21


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_22


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_23


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_20


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_19


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_18


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_40


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_16


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_43


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_17


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_14


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_13


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_12


title: BDF1_in-vitro_8cell_Aphidicolin_DEP_01_165_36


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_11


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_10


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_09


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_08


title: BDF1_in-vivo_16-cell_LCS_01_005_048

value: in vivo


title: BDF1_in-vivo_16-cell_LCS_01_005_044


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_07


title: BDF1_in-vivo_16-cell_LCS_01_005_043


title: BDF1_in-vivo_16-cell_LCS_01_005_042


title: BDF1_in-vivo_16-cell_LCS_01_005_045


title: BDF1_in-vivo_16-cell_LCS_01_005_040


title: BDF1_in-vivo_16-cell_LCS_01_005_038


title: BDF1_in-vivo_16-cell_LCS_01_005_039


title: BDF1_in-vivo_16-cell_LCS_01_005_037


title: BDF1_in-vivo_16-cell_LCS_01_005_036


title: BDF1_in-vivo_16-cell_LCS_01_005_035


title: BDF1_in-vivo_16-cell_LCS_01_005_033


title: BDF1_in-vitro_8cell_DMSO_DEP_01_165_15


title: BDF1_in-vivo_16-cell_LCS_01_005_029


title: BDF1_in-vivo_16-cell_LCS_01_005_032


title: BDF1_in-vivo_16-cell_LCS_01_005_030


title: BDF1_in-vivo_16-cell_LCS_01_005_028


title: BDF1_in-vivo_16-cell_LCS_01_005_027


title: BDF1_in-vivo_16-cell_LCS_01_005_023


title: BDF1_in-vivo_16-cell_LCS_01_005_024


title: BDF1_in-vivo_16-cell_LCS_01_005_047


title: BDF1_in-vivo_16-cell_LCS_01_005_026


title: BDF1_in-vivo_16-cell_LCS_01_005_046


title: BDF1_in-vivo_16-cell_LCS_01_005_022


title: BDF1_in-vivo_16-cell_LCS_01_005_041


title: BDF1_in-vivo_16-cell_LCS_01_005_017


title: BDF1_in-vivo_16-cell_LCS_01_005_019


title: BDF1_in-vivo_16-cell_LCS_01_005_025


title: BDF1_in-vivo_16-cell_LCS_01_005_016


title: BDF1_in-vivo_16-cell_LCS_01_005_021


title: BDF1_in-vivo_16-cell_LCS_01_005_013


title: BDF1_in-vivo_16-cell_LCS_01_005_012


title: BDF1_in-vivo_16-cell_LCS_01_005_010


title: BDF1_in-vivo_16-cell_LCS_01_005_031


title: BDF1_in-vivo_16-cell_LCS_01_005_011


title: BDF1_in-vivo_16-cell_LCS_01_005_034


title: BDF1_in-vivo_16-cell_LCS_01_005_009


title: BDF1_in-vivo_16-cell_LCS_01_005_007


title: BDF1_in-vivo_16-cell_LCS_01_005_014


title: BDF1_in-vivo_16-cell_LCS_01_005_006


title: BDF1_in-vivo_16-cell_LCS_01_005_008


title: BDF1_in-vivo_16-cell_LCS_01_005_005


title: BDF1_in-vivo_16-cell_LCS_01_005_003


title: BDF1_in-vivo_16-cell_LCS_01_005_004


title: BDF1_in-vivo_16-cell_LCS_01_005_020


title: BDF1_in-vivo_16-cell_LCS_01_004_074


title: BDF1_in-vivo_16-cell_LCS_01_005_001


title: BDF1_in-vivo_16-cell_LCS_01_004_073


title: BDF1_in-vivo_16-cell_LCS_01_005_015


title: BDF1_in-vivo_16-cell_LCS_01_004_072


title: BDF1_in-vivo_16-cell_LCS_01_004_071


title: BDF1_in-vivo_16-cell_LCS_01_004_070


title: BDF1_in-vivo_16-cell_LCS_01_004_068


title: BDF1_in-vivo_16-cell_LCS_01_004_067


title: BDF1_in-vivo_16-cell_LCS_01_004_069


title: BDF1_in-vivo_16-cell_LCS_01_004_066


title: BDF1_in-vivo_16-cell_LCS_01_004_065


title: BDF1_in-vivo_16-cell_LCS_01_004_061


title: BDF1_in-vivo_16-cell_LCS_01_004_060


title: BDF1_in-vivo_16-cell_LCS_01_004_062


title: BDF1_in-vivo_16-cell_LCS_01_004_059


title: BDF1_in-vivo_16-cell_LCS_01_004_063


title: BDF1_in-vivo_16-cell_LCS_01_004_058


title: BDF1_in-vivo_16-cell_LCS_01_004_055


title: BDF1_in-vivo_16-cell_LCS_01_004_054


title: BDF1_in-vivo_16-cell_LCS_01_005_002


title: BDF1_in-vivo_16-cell_LCS_01_004_075


title: BDF1_in-vivo_16-cell_LCS_01_004_057


title: BDF1_in-vivo_16-cell_LCS_01_004_053


title: BDF1_in-vivo_16-cell_LCS_01_004_052


title: BDF1_in-vivo_16-cell_LCS_01_005_018


title: BDF1_in-vivo_16-cell_LCS_01_004_051


title: BDF1_in-vivo_16-cell_LCS_01_004_048


title: BDF1_in-vivo_16-cell_LCS_01_004_049


title: BDF1_in-vivo_16-cell_LCS_01_004_050


title: BDF1_in-vivo_16-cell_LCS_01_004_045


title: BDF1_in-vivo_16-cell_LCS_01_004_046


title: BDF1_in-vivo_16-cell_LCS_01_004_047


title: BDF1_in-vivo_16-cell_LCS_01_004_043


title: BDF1_in-vivo_16-cell_LCS_01_004_044


title: BDF1_in-vivo_16-cell_LCS_01_004_042


title: BDF1_in-vivo_16-cell_LCS_01_004_040


title: BDF1_in-vivo_16-cell_LCS_01_004_038


title: BDF1_in-vivo_16-cell_LCS_01_004_041


title: BDF1_in-vivo_16-cell_LCS_01_004_064


title: BDF1_in-vivo_16-cell_LCS_01_004_036


title: BDF1_in-vivo_16-cell_LCS_01_004_037


title: BDF1_in-vivo_16-cell_LCS_01_004_056


title: BDF1_in-vivo_16-cell_LCS_01_004_035


title: BDF1_in-vivo_16-cell_LCS_01_004_032


title: BDF1_in-vivo_16-cell_LCS_01_004_033


title: BDF1_in-vivo_16-cell_LCS_01_004_034


title: BDF1_in-vivo_16-cell_LCS_01_004_030


title: BDF1_in-vivo_16-cell_LCS_01_004_028


title: BDF1_in-vivo_16-cell_LCS_01_004_031


title: BDF1_in-vivo_16-cell_LCS_01_004_029


title: BDF1_in-vivo_16-cell_LCS_01_004_026


title: BDF1_in-vivo_16-cell_LCS_01_004_027


title: BDF1_in-vivo_16-cell_LCS_01_004_021


title: BDF1_in-vivo_16-cell_LCS_01_004_023


title: BDF1_in-vivo_16-cell_LCS_01_004_024


title: BDF1_in-vivo_16-cell_LCS_01_004_022


title: BDF1_in-vivo_16-cell_LCS_01_004_025


title: BDF1_in-vivo_16-cell_LCS_01_004_020


title: BDF1_in-vivo_16-cell_LCS_01_004_015


title: BDF1_in-vivo_16-cell_LCS_01_004_039


title: BDF1_in-vivo_16-cell_LCS_01_004_017


title: BDF1_in-vivo_16-cell_LCS_01_004_014


title: BDF1_in-vivo_16-cell_LCS_01_004_019


title: BDF1_in-vivo_16-cell_LCS_01_004_018


title: BDF1_in-vivo_16-cell_LCS_01_004_012


title: BDF1_in-vivo_16-cell_LCS_01_004_013


title: BDF1_in-vivo_16-cell_LCS_01_004_008


title: BDF1_in-vivo_16-cell_LCS_01_004_016


title: BDF1_in-vivo_16-cell_LCS_01_004_011


title: BDF1_in-vivo_16-cell_LCS_01_004_009


title: BDF1_in-vivo_16-cell_LCS_01_004_007


title: BDF1_in-vivo_16-cell_LCS_01_004_006


title: BDF1_in-vivo_16-cell_LCS_01_004_010


title: BDF1_in-vivo_16-cell_LCS_01_004_004


title: BDF1_in-vivo_16-cell_LCS_01_004_005


title: BDF1_in-vivo_16-cell_LCS_01_004_001


title: BDF1_in-vivo_16-cell_LCS_01_004_003


title: BDF1_in-vivo_04-cell_LCS_01_003_094


title: BDF1_in-vivo_04-cell_LCS_01_003_093


title: BDF1_in-vivo_04-cell_LCS_01_003_095


title: BDF1_in-vivo_16-cell_LCS_01_004_002


title: BDF1_in-vivo_04-cell_LCS_01_003_087


title: BDF1_in-vivo_04-cell_LCS_01_003_086


title: BDF1_in-vivo_04-cell_LCS_01_003_090


title: BDF1_in-vivo_04-cell_LCS_01_003_092


title: BDF1_in-vivo_04-cell_LCS_01_003_085


title: BDF1_in-vivo_04-cell_LCS_01_003_091


title: BDF1_in-vivo_04-cell_LCS_01_003_080


title: BDF1_in-vivo_04-cell_LCS_01_003_083


title: BDF1_in-vivo_04-cell_LCS_01_003_078


title: BDF1_in-vivo_04-cell_LCS_01_003_084


title: BDF1_in-vivo_04-cell_LCS_01_003_077


title: BDF1_in-vivo_04-cell_LCS_01_003_081


title: BDF1_in-vivo_04-cell_LCS_01_003_075


title: BDF1_in-vivo_04-cell_LCS_01_003_073


title: BDF1_in-vivo_04-cell_LCS_01_003_070


title: BDF1_in-vivo_04-cell_LCS_01_003_074


title: BDF1_in-vivo_04-cell_LCS_01_003_076


title: BDF1_in-vivo_04-cell_LCS_01_003_067


title: BDF1_in-vivo_04-cell_LCS_01_003_071


title: BDF1_in-vivo_04-cell_LCS_01_003_088


title: BDF1_in-vivo_04-cell_LCS_01_003_064


title: BDF1_in-vivo_04-cell_LCS_01_003_065


title: BDF1_in-vivo_04-cell_LCS_01_003_069


title: BDF1_in-vivo_04-cell_LCS_01_003_068


title: BDF1_in-vivo_04-cell_LCS_01_003_082


title: BDF1_in-vivo_04-cell_LCS_01_003_062


title: BDF1_in-vivo_04-cell_LCS_01_003_066


title: BDF1_in-vivo_04-cell_LCS_01_003_063


title: BDF1_in-vivo_04-cell_LCS_01_003_058


title: BDF1_in-vivo_04-cell_LCS_01_003_079


title: BDF1_in-vivo_04-cell_LCS_01_003_060


title: BDF1_in-vivo_04-cell_LCS_01_003_061


title: BDF1_in-vivo_04-cell_LCS_01_003_059


title: BDF1_in-vivo_04-cell_LCS_01_003_057


title: BDF1_in-vivo_04-cell_LCS_01_003_056


title: BDF1_in-vivo_04-cell_LCS_01_003_072


title: BDF1_in-vivo_04-cell_LCS_01_003_053


title: BDF1_in-vivo_04-cell_LCS_01_003_052


title: BDF1_in-vivo_04-cell_LCS_01_003_054


title: BDF1_in-vivo_04-cell_LCS_01_003_051


title: BDF1_in-vivo_04-cell_LCS_01_003_046


title: BDF1_in-vivo_04-cell_LCS_01_003_045


title: BDF1_in-vivo_04-cell_LCS_01_003_047


title: BDF1_in-vivo_04-cell_LCS_01_003_049


title: BDF1_in-vivo_04-cell_LCS_01_003_043


title: BDF1_in-vivo_04-cell_LCS_01_003_048


title: BDF1_in-vivo_04-cell_LCS_01_003_044


title: BDF1_in-vivo_04-cell_LCS_01_003_039


title: BDF1_in-vivo_04-cell_LCS_01_003_041


title: BDF1_in-vivo_04-cell_LCS_01_003_038


title: BDF1_in-vivo_04-cell_LCS_01_003_042


title: BDF1_in-vivo_04-cell_LCS_01_003_089


title: BDF1_in-vivo_04-cell_LCS_01_003_040


title: BDF1_in-vivo_04-cell_LCS_01_003_036


title: BDF1_in-vivo_04-cell_LCS_01_003_034


title: BDF1_in-vivo_04-cell_LCS_01_003_035


title: BDF1_in-vivo_04-cell_LCS_01_003_033


title: BDF1_in-vivo_04-cell_LCS_01_003_029


title: BDF1_in-vivo_04-cell_LCS_01_003_031


title: BDF1_in-vivo_04-cell_LCS_01_003_030


title: BDF1_in-vivo_04-cell_LCS_01_003_028


title: BDF1_in-vivo_04-cell_LCS_01_003_032


title: BDF1_in-vivo_04-cell_LCS_01_003_027


title: BDF1_in-vivo_04-cell_LCS_01_003_026


title: BDF1_in-vivo_04-cell_LCS_01_003_050


title: BDF1_in-vivo_04-cell_LCS_01_003_023


title: BDF1_in-vivo_04-cell_LCS_01_003_024


title: BDF1_in-vivo_04-cell_LCS_01_003_025


title: BDF1_in-vivo_04-cell_LCS_01_003_021


title: BDF1_in-vivo_04-cell_LCS_01_003_020


title: BDF1_in-vivo_04-cell_LCS_01_003_022


title: BDF1_in-vivo_04-cell_LCS_01_003_016


title: BDF1_in-vivo_04-cell_LCS_01_003_019


title: BDF1_in-vivo_04-cell_LCS_01_003_055


title: BDF1_in-vivo_04-cell_LCS_01_003_014


title: BDF1_in-vivo_04-cell_LCS_01_003_015


title: BDF1_in-vivo_04-cell_LCS_01_003_011


title: BDF1_in-vivo_04-cell_LCS_01_003_037


title: BDF1_in-vivo_04-cell_LCS_01_003_013


title: BDF1_in-vivo_04-cell_LCS_01_003_010


title: BDF1_in-vivo_04-cell_LCS_01_003_008


title: BDF1_in-vivo_04-cell_LCS_01_003_009


title: BDF1_in-vivo_04-cell_LCS_01_003_006


title: BDF1_in-vivo_04-cell_LCS_01_003_004


title: BDF1_in-vivo_08-cell_LCS_01_002_092


title: BDF1_in-vivo_04-cell_LCS_01_003_005


title: BDF1_in-vivo_04-cell_LCS_01_003_002


title: BDF1_in-vivo_04-cell_LCS_01_003_003


title: BDF1_in-vivo_04-cell_LCS_01_003_001


title: BDF1_in-vivo_08-cell_LCS_01_002_091


title: BDF1_in-vivo_08-cell_LCS_01_002_090


title: BDF1_in-vivo_08-cell_LCS_01_002_089


title: BDF1_in-vivo_08-cell_LCS_01_002_087


title: BDF1_in-vivo_04-cell_LCS_01_003_017


title: BDF1_in-vivo_04-cell_LCS_01_003_012


title: BDF1_in-vivo_04-cell_LCS_01_003_018


title: BDF1_in-vivo_08-cell_LCS_01_002_082


title: BDF1_in-vivo_08-cell_LCS_01_002_084


title: BDF1_in-vivo_08-cell_LCS_01_002_085


title: BDF1_in-vivo_08-cell_LCS_01_002_083


title: BDF1_in-vivo_08-cell_LCS_01_002_086


title: BDF1_in-vivo_08-cell_LCS_01_002_081


title: BDF1_in-vivo_08-cell_LCS_01_002_080


title: BDF1_in-vivo_08-cell_LCS_01_002_078


title: BDF1_in-vivo_04-cell_LCS_01_003_007


title: BDF1_in-vivo_08-cell_LCS_01_002_076


title: BDF1_in-vivo_08-cell_LCS_01_002_079


title: BDF1_in-vivo_08-cell_LCS_01_002_075


title: BDF1_in-vivo_08-cell_LCS_01_002_074


title: BDF1_in-vivo_08-cell_LCS_01_002_077


title: BDF1_in-vivo_08-cell_LCS_01_002_073


title: BDF1_in-vivo_08-cell_LCS_01_002_072


title: BDF1_in-vivo_08-cell_LCS_01_002_069


title: BDF1_in-vivo_08-cell_LCS_01_002_071


title: BDF1_in-vivo_08-cell_LCS_01_002_066


title: BDF1_in-vivo_08-cell_LCS_01_002_088


title: BDF1_in-vivo_08-cell_LCS_01_002_065


title: BDF1_in-vivo_08-cell_LCS_01_002_063


title: BDF1_in-vivo_08-cell_LCS_01_002_062


title: BDF1_in-vivo_08-cell_LCS_01_002_068


title: BDF1_in-vivo_08-cell_LCS_01_002_061


title: BDF1_in-vivo_08-cell_LCS_01_002_064


title: BDF1_in-vivo_08-cell_LCS_01_002_067


title: BDF1_in-vivo_08-cell_LCS_01_002_060


title: BDF1_in-vivo_08-cell_LCS_01_002_059


title: BDF1_in-vivo_08-cell_LCS_01_002_053


title: BDF1_in-vivo_08-cell_LCS_01_002_054


title: BDF1_in-vivo_08-cell_LCS_01_002_057


title: BDF1_in-vivo_08-cell_LCS_01_002_055


title: BDF1_in-vivo_08-cell_LCS_01_002_051


title: BDF1_in-vivo_08-cell_LCS_01_002_049


title: BDF1_in-vivo_08-cell_LCS_01_002_052


title: BDF1_in-vivo_08-cell_LCS_01_002_058


title: BDF1_in-vivo_08-cell_LCS_01_002_045


title: BDF1_in-vivo_08-cell_LCS_01_002_044


title: BDF1_in-vivo_08-cell_LCS_01_002_043


title: BDF1_in-vivo_08-cell_LCS_01_002_050


title: BDF1_in-vivo_08-cell_LCS_01_002_042


title: BDF1_in-vivo_08-cell_LCS_01_002_048


title: BDF1_in-vivo_08-cell_LCS_01_002_039


title: BDF1_in-vivo_08-cell_LCS_01_002_040


title: BDF1_in-vivo_08-cell_LCS_01_002_037


title: BDF1_in-vivo_08-cell_LCS_01_002_036


title: BDF1_in-vivo_08-cell_LCS_01_002_038


title: BDF1_in-vivo_08-cell_LCS_01_002_035


title: BDF1_in-vivo_08-cell_LCS_01_002_034


title: BDF1_in-vivo_08-cell_LCS_01_002_041


title: BDF1_in-vivo_08-cell_LCS_01_002_033


title: BDF1_in-vivo_08-cell_LCS_01_002_030


title: BDF1_in-vivo_08-cell_LCS_01_002_031


title: BDF1_in-vivo_08-cell_LCS_01_002_032


title: BDF1_in-vivo_08-cell_LCS_01_002_056


title: BDF1_in-vivo_04-cell_LCS_01_002_028


title: BDF1_in-vivo_08-cell_LCS_01_002_047


title: BDF1_in-vivo_04-cell_LCS_01_002_026


title: BDF1_in-vivo_04-cell_LCS_01_002_027


title: BDF1_in-vivo_04-cell_LCS_01_002_024


title: BDF1_in-vivo_08-cell_LCS_01_002_046


title: BDF1_in-vivo_04-cell_LCS_01_002_022


title: BDF1_in-vivo_04-cell_LCS_01_002_020


title: BDF1_in-vivo_04-cell_LCS_01_002_018


title: BDF1_in-vivo_04-cell_LCS_01_002_021


title: BDF1_in-vivo_04-cell_LCS_01_002_016


title: BDF1_in-vivo_04-cell_LCS_01_002_019


title: BDF1_in-vivo_04-cell_LCS_01_002_017


title: BDF1_in-vivo_04-cell_LCS_01_002_012


title: BDF1_in-vivo_08-cell_LCS_01_002_070


title: BDF1_in-vivo_04-cell_LCS_01_002_011


title: BDF1_in-vivo_04-cell_LCS_01_002_015


title: BDF1_in-vivo_04-cell_LCS_01_002_008


title: BDF1_in-vivo_04-cell_LCS_01_002_007


title: BDF1_in-vivo_04-cell_LCS_01_002_013


title: BDF1_in-vivo_04-cell_LCS_01_002_010


title: BDF1_in-vivo_04-cell_LCS_01_002_025


title: BDF1_in-vivo_04-cell_LCS_01_002_009


title: BDF1_in-vivo_08-cell_LCS_01_002_029


title: BDF1_in-vivo_04-cell_LCS_01_002_006


title: BDF1_in-vivo_04-cell_LCS_01_002_005


title: BDF1_in-vivo_04-cell_LCS_01_002_023


title: BDF1_in-vivo_04-cell_LCS_01_002_004


title: BDF1_in-vivo_04-cell_LCS_01_002_001


title: BDF1_in-vivo_08-cell_LCS_01_001_096


title: BDF1_in-vivo_04-cell_LCS_01_002_002


title: BDF1_in-vivo_04-cell_LCS_01_002_003


title: BDF1_in-vivo_08-cell_LCS_01_001_094


title: BDF1_in-vivo_08-cell_LCS_01_001_095


title: BDF1_in-vivo_08-cell_LCS_01_001_092


title: BDF1_in-vivo_08-cell_LCS_01_001_091


title: BDF1_in-vivo_08-cell_LCS_01_001_093


title: BDF1_in-vivo_08-cell_LCS_01_001_090


title: BDF1_in-vivo_08-cell_LCS_01_001_089


title: BDF1_in-vivo_04-cell_LCS_01_002_014


title: BDF1_in-vivo_08-cell_LCS_01_001_088


title: BDF1_in-vivo_08-cell_LCS_01_001_083


title: BDF1_in-vivo_08-cell_LCS_01_001_082


title: BDF1_in-vivo_08-cell_LCS_01_001_084


title: BDF1_in-vivo_08-cell_LCS_01_001_087


title: BDF1_in-vivo_08-cell_LCS_01_001_081


title: BDF1_in-vivo_08-cell_LCS_01_001_078


title: BDF1_in-vivo_08-cell_LCS_01_001_074


title: BDF1_in-vivo_08-cell_LCS_01_001_077


title: BDF1_in-vivo_08-cell_LCS_01_001_073


title: BDF1_in-vivo_08-cell_LCS_01_001_066


title: BDF1_in-vivo_08-cell_LCS_01_001_070


title: BDF1_in-vivo_08-cell_LCS_01_001_067


title: BDF1_in-vivo_08-cell_LCS_01_001_075


title: BDF1_in-vivo_08-cell_LCS_01_001_062


title: BDF1_in-vivo_08-cell_LCS_01_001_086


title: BDF1_in-vivo_08-cell_LCS_01_001_085


title: BDF1_in-vivo_08-cell_LCS_01_001_064


title: BDF1_in-vivo_08-cell_LCS_01_001_076


title: BDF1_in-vivo_08-cell_LCS_01_001_059


title: BDF1_in-vivo_08-cell_LCS_01_001_058


title: BDF1_in-vivo_08-cell_LCS_01_001_063


title: BDF1_in-vivo_08-cell_LCS_01_001_069


title: BDF1_in-vivo_08-cell_LCS_01_001_072


title: BDF1_in-vivo_08-cell_LCS_01_001_054


title: BDF1_in-vivo_08-cell_LCS_01_001_055


title: BDF1_in-vivo_08-cell_LCS_01_001_061


title: BDF1_in-vivo_08-cell_LCS_01_001_060


title: BDF1_in-vivo_08-cell_LCS_01_001_057


title: BDF1_in-vivo_08-cell_LCS_01_001_056


title: BDF1_in-vivo_08-cell_LCS_01_001_051


title: BDF1_in-vivo_08-cell_LCS_01_001_079


title: BDF1_in-vivo_08-cell_LCS_01_001_050


title: BDF1_in-vivo_08-cell_LCS_01_001_071


title: BDF1_in-vivo_08-cell_LCS_01_001_080


title: BDF1_in-vivo_08-cell_LCS_01_001_049


title: BDF1_in-vivo_08-cell_LCS_01_001_068


title: BDF1_in-vivo_08-cell_LCS_01_001_065


title: BDF1_in-vivo_08-cell_LCS_01_001_047


title: BDF1_in-vivo_08-cell_LCS_01_001_048


title: BDF1_in-vivo_08-cell_LCS_01_001_045


title: BDF1_in-vivo_08-cell_LCS_01_001_043


title: BDF1_in-vivo_08-cell_LCS_01_001_044


title: BDF1_in-vivo_08-cell_LCS_01_001_046


title: BDF1_in-vivo_08-cell_LCS_01_001_039


title: BDF1_in-vivo_08-cell_LCS_01_001_041


title: BDF1_in-vivo_08-cell_LCS_01_001_042


title: BDF1_in-vivo_08-cell_LCS_01_001_040


title: BDF1_in-vivo_08-cell_LCS_01_001_036


title: BDF1_in-vivo_08-cell_LCS_01_001_053


title: BDF1_in-vivo_08-cell_LCS_01_001_035


title: BDF1_in-vivo_08-cell_LCS_01_001_034


title: BDF1_in-vivo_08-cell_LCS_01_001_052


title: BDF1_in-vivo_08-cell_LCS_01_001_033


title: BDF1_in-vivo_08-cell_LCS_01_001_031


title: BDF1_in-vivo_08-cell_LCS_01_001_030


title: BDF1_in-vivo_08-cell_LCS_01_001_032


title: BDF1_in-vivo_08-cell_LCS_01_001_029


title: BDF1_in-vivo_08-cell_LCS_01_001_025


title: BDF1_in-vivo_08-cell_LCS_01_001_027


title: BDF1_in-vivo_08-cell_LCS_01_001_026


title: BDF1_in-vivo_08-cell_LCS_01_001_023


title: BDF1_in-vivo_08-cell_LCS_01_001_028


title: BDF1_in-vivo_08-cell_LCS_01_001_022


title: BDF1_in-vivo_08-cell_LCS_01_001_021


title: BDF1_in-vivo_08-cell_LCS_01_001_024


title: BDF1_in-vivo_08-cell_LCS_01_001_020


title: BDF1_in-vivo_08-cell_LCS_01_001_019


title: BDF1_in-vivo_08-cell_LCS_01_001_016


title: BDF1_in-vivo_08-cell_LCS_01_001_018


title: BDF1_in-vivo_08-cell_LCS_01_001_014


title: BDF1_in-vivo_08-cell_LCS_01_001_038


title: BDF1_in-vivo_08-cell_LCS_01_001_017


title: BDF1_in-vivo_08-cell_LCS_01_001_015


title: BDF1_in-vivo_08-cell_LCS_01_001_037


title: BDF1_in-vivo_08-cell_LCS_01_001_012


title: BDF1_in-vivo_08-cell_LCS_01_001_011


title: BDF1_in-vivo_08-cell_LCS_01_001_008


title: BDF1_in-vivo_08-cell_LCS_01_001_007


title: BDF1_in-vivo_08-cell_LCS_01_001_009


title: BDF1_in-vivo_08-cell_LCS_01_001_006


title: BDF1_in-vivo_08-cell_LCS_01_001_005


title: BDF1_in-vivo_08-cell_LCS_01_001_004


title: BDF1_in-vivo_08-cell_LCS_01_001_001


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-92


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-88


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-91


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-90


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-89


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-87


title: BDF1_in-vivo_08-cell_LCS_01_001_002


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-86


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-84


title: BDF1_in-vivo_08-cell_LCS_01_001_013


title: BDF1_in-vivo_08-cell_LCS_01_001_010


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-80


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-82


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-81


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-77


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-78


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-85


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-83


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-76


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-74


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-79


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-75


title: BDF1_in-vivo_08-cell_LCS_01_001_003


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-72


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-73


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-71


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-70


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-68


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-69


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-67


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-66


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-65


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-60


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-62


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-64


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-63


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-61


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-57


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-58


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-56


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-55


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-53


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-54


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-59


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-52


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-50


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-51


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-48


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-45


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-47


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-42


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-44


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-46


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-41


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-39


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-40


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-38


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-34


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-33


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-36


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-31


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-30


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-37


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-32


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-49


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-27


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-25


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-26


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-28


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-29


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-24


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-23


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-43


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-22


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-21


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-19


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-20


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-17


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-18


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-16


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-15


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-14


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-13


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-93


title: BDF1_in-vitro_G1_08-cell_DEP_01_031-35


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-92


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-94


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-91


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-89


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-90


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-87


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-86


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-85


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-88


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-84


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-82


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-81


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-78


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-80


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-83


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-79


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-73


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-74


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-77


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-68


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-66


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-71


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-67


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-72


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-75


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-76


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-70


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-69


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-61


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-56


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-57


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-64


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-65


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-60


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-58


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-55


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-54


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-52


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-53


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-51


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-50


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-46


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-49


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-47

description:
filtered by MAD score
BDF1_in-vitro_G1_08cell_log2med.txt.gz


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-48


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-63


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-45


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-43


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-41


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-44


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-38


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-37


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-36


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-59


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-39


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-62


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-40


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-34


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-31


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-30


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-32


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-29


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-27


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-28


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-26


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-25


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-23


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-24


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-21


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-42


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-20


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-22


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-17


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-19


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-15


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-16


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-13


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-18


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-35


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-14


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-09


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-10


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-08


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-12


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-11


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-33


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-07


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-05


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-03


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-04


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-06


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-01


title: BDF1_in-vitro_G1_08-cell_DEP-01-025-02


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-79


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-80


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-78


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-75


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-74


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-73


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-70


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-72


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-69


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-71


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-68


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-67


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-65


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-64


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-66


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-62


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-61


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-57


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-56


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-59


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-60


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-58


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-55


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-54


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-53


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-77


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-52


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-51


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-76


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-44


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-47


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-43


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-42


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-45


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-46


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-41


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-38


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-35


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-36


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-40


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-37


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-63


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-39


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-30


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-29


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-27


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-32


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-28


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-50


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-49


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-25


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-33


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-48


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-34


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-24


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-26


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-23


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-22


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-20


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-21


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-18


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-19


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-17


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-15


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-16


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-14


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-13


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-12


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-31


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-11


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-10


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-01


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-71


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-70


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-04


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-03


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-08


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-06


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-74


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-72


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-09


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-02


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-67


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-66


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-65


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-64


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-62


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-59


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-60


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-07


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-57


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-58


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-56


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-54


title: BDF1_in-vitro_G1_04-cell_DEP_01_036-05


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-73


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-68


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-69


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-53


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-51


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-43


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-48


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-52


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-44


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-46


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-45


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-47


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-63


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-49


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-42


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-41


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-40


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-37


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-36


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-35


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-55


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-34


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-33


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-61


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-31


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-32


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-50


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-27


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-28


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-30


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-25


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-26


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-29


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-24


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-39


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-22


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-20


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-21


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-38


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-19


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-17


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-23


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-18


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-15


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-16


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-12


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-11


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-10


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-09


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-08


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-07


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-06


title: B6_EdU_08-cell_DEP_01_116_66

description:
B6_EdU_08cell_log2med.txt.gz
B6_EdU_08cell_binary.txt.gz

value: EdU labeling


title: B6_EdU_08-cell_DEP_01_116_65


title: B6_EdU_08-cell_DEP_01_116_63


title: B6_EdU_08-cell_DEP_01_116_62


title: B6_EdU_08-cell_DEP_01_116_64


title: B6_EdU_08-cell_DEP_01_116_60


title: B6_EdU_08-cell_DEP_01_116_59


title: B6_EdU_08-cell_DEP_01_116_54


title: B6_EdU_04-cell_DEP_01_121_77

description:
B6_EdU_04cell_log2med.txt.gz
B6_EdU_04cell_binary.txt.gz


title: B6_EdU_04-cell_DEP_01_121_78


title: B6_EdU_04-cell_DEP_01_121_76


title: B6_EdU_04-cell_DEP_01_121_73


title: B6_EdU_04-cell_DEP_01_121_69


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-13


title: B6_EdU_08-cell_DEP_01_116_50


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-14


title: B6_EdU_08-cell_DEP_01_116_51


title: B6_EdU_04-cell_DEP_01_121_68


title: B6_EdU_04-cell_DEP_01_121_72


title: B6_EdU_04-cell_DEP_01_121_67


title: B6_EdU_04-cell_DEP_01_121_71


title: BDF1_in-vitro_G1_04-cell_DEP-01-029-05


title: B6_EdU_04-cell_DEP_01_121_74


title: B6_EdU_04-cell_DEP_01_121_70


title: B6_EdU_04-cell_DEP_01_121_66


title: B6_EdU_04-cell_DEP_01_121_65


title: B6_EdU_04-cell_DEP_01_121_64


title: B6_EdU_04-cell_DEP_01_121_60


title: B6_EdU_04-cell_DEP_01_121_58


title: B6_EdU_04-cell_DEP_01_121_57


title: B6_EdU_04-cell_DEP_01_121_59


title: B6_EdU_04-cell_DEP_01_121_56


title: SCNT_02-cell_DEP_01_118_72

description:
filtered by MAD score
SCNT_02cell_log2med.txt.gz
SCNT_02cell_binary.txt.gz


title: B6_EdU_04-cell_DEP_01_121_55


title: SCNT_02-cell_DEP_01_118_71

description:
SCNT_02cell_log2med.txt.gz
SCNT_02cell_binary.txt.gz


title: SCNT_02-cell_DEP_01_118_68


title: SCNT_02-cell_DEP_01_118_69


title: SCNT_02-cell_DEP_01_118_64


title: SCNT_02-cell_DEP_01_118_67


title: SCNT_02-cell_DEP_01_118_66


title: SCNT_02-cell_DEP_01_118_62


title: SCNT_02-cell_DEP_01_118_60


title: SCNT_02-cell_DEP_01_118_61


title: SCNT_02-cell_DEP_01_118_52


title: SCNT_02-cell_DEP_01_118_53


title: SCNT_02-cell_DEP_01_118_65


title: SCNT_02-cell_DEP_01_118_51


title: SCNT_02-cell_DEP_01_118_55


title: SCNT_02-cell_DEP_01_118_59


title: SCNT_02-cell_DEP_01_118_48


title: SCNT_02-cell_DEP_01_118_47


title: SCNT_02-cell_DEP_01_118_54


title: SCNT_02-cell_DEP_01_118_56


title: SCNT_02-cell_DEP_01_118_49


title: SCNT_02-cell_DEP_01_118_58


title: SCNT_02-cell_DEP_01_118_45


title: SCNT_02-cell_DEP_01_118_63


title: SCNT_02-cell_DEP_01_118_46


title: SCNT_02-cell_DEP_01_118_57


title: SCNT_02-cell_DEP_01_118_44


title: SCNT_02-cell_DEP_01_118_70


title: SCNT_02-cell_DEP_01_118_41


title: SCNT_02-cell_DEP_01_118_43


title: SCNT_02-cell_DEP_01_118_42


title: SCNT_02-cell_DEP_01_118_50


title: SCNT_02-cell_DEP_01_118_39


title: SCNT_02-cell_DEP_01_118_40


title: SCNT_02-cell_DEP_01_118_37


title: SCNT_02-cell_DEP_01_118_38


title: SCNT_02-cell_DEP_01_118_36


title: SCNT_02-cell_DEP_01_118_35


title: SCNT_02-cell_DEP_01_118_33


title: SCNT_02-cell_DEP_01_118_34


title: SCNT_02-cell_DEP_01_118_32


title: SCNT_02-cell_DEP_01_118_30


title: SCNT_02-cell_DEP_01_118_24


title: SCNT_02-cell_DEP_01_118_26


title: SCNT_02-cell_DEP_01_118_25


title: SCNT_02-cell_DEP_01_118_31


title: SCNT_02-cell_DEP_01_118_29


title: SCNT_02-cell_DEP_01_118_22


title: SCNT_02-cell_DEP_01_118_27


title: SCNT_02-cell_DEP_01_118_23


title: SCNT_02-cell_DEP_01_118_17


title: SCNT_02-cell_DEP_01_118_20


title: SCNT_02-cell_DEP_01_118_16


title: SCNT_02-cell_DEP_01_118_15


title: SCNT_02-cell_DEP_01_118_14


title: SCNT_02-cell_DEP_01_118_13


title: SCNT_02-cell_DEP_01_118_19


title: SCNT_02-cell_DEP_01_118_12


title: SCNT_02-cell_DEP_01_118_11


title: SCNT_02-cell_DEP_01_118_18


title: SCNT_02-cell_DEP_01_118_09


title: SCNT_02-cell_DEP_01_118_10


title: SCNT_02-cell_DEP_01_118_07


title: SCNT_02-cell_DEP_01_118_08


title: SCNT_02-cell_DEP_01_118_06


title: SCNT_02-cell_DEP_01_118_05


title: SCNT_02-cell_DEP_01_118_28


title: SCNT_02-cell_DEP_01_118_03


title: SCNT_02-cell_DEP_01_118_04


title: SCNT_02-cell_DEP_01_118_01


title: SCNT_02-cell_DEP_01_118_21


title: SCNT_01-cell_DEP_01_119_79

description:
SCNT_01cell_log2med.txt.gz
SCNT_01cell_binary.txt.gz


title: SCNT_02-cell_DEP_01_118_02


title: SCNT_01-cell_DEP_01_119_77


title: SCNT_01-cell_DEP_01_119_76


title: SCNT_01-cell_DEP_01_119_75


title: SCNT_01-cell_DEP_01_119_74


title: SCNT_01-cell_DEP_01_119_72


title: SCNT_01-cell_DEP_01_119_73


title: SCNT_01-cell_DEP_01_119_65


title: SCNT_01-cell_DEP_01_119_67


title: SCNT_01-cell_DEP_01_119_69


title: SCNT_01-cell_DEP_01_119_64


title: SCNT_01-cell_DEP_01_119_68


title: SCNT_01-cell_DEP_01_119_63


title: SCNT_01-cell_DEP_01_119_71


title: SCNT_01-cell_DEP_01_119_66


title: SCNT_01-cell_DEP_01_119_61


title: SCNT_01-cell_DEP_01_119_62


title: SCNT_01-cell_DEP_01_119_60


title: SCNT_01-cell_DEP_01_119_59


title: SCNT_01-cell_DEP_01_119_58


title: SCNT_01-cell_DEP_01_119_53


title: SCNT_01-cell_DEP_01_119_55


title: SCNT_01-cell_DEP_01_119_56


title: SCNT_01-cell_DEP_01_119_54


title: SCNT_01-cell_DEP_01_119_78


title: SCNT_01-cell_DEP_01_119_52


title: SCNT_01-cell_DEP_01_119_50


title: SCNT_01-cell_DEP_01_119_51


title: SCNT_01-cell_DEP_01_119_49


title: SCNT_01-cell_DEP_01_119_47


title: SCNT_01-cell_DEP_01_119_70


title: SCNT_01-cell_DEP_01_119_48


title: SCNT_01-cell_DEP_01_119_43


title: SCNT_01-cell_DEP_01_119_40


title: SCNT_01-cell_DEP_01_119_41


title: SCNT_01-cell_DEP_01_119_39


title: SCNT_01-cell_DEP_01_119_38


title: SCNT_01-cell_DEP_01_119_42


title: SCNT_01-cell_DEP_01_119_37


title: SCNT_01-cell_DEP_01_119_45


title: SCNT_01-cell_DEP_01_119_36


title: SCNT_01-cell_DEP_01_119_57


title: SCNT_01-cell_DEP_01_119_35


title: SCNT_01-cell_DEP_01_119_34


title: SCNT_01-cell_DEP_01_119_33


title: SCNT_01-cell_DEP_01_119_32


title: SCNT_01-cell_DEP_01_119_30


title: SCNT_01-cell_DEP_01_119_29


title: SCNT_01-cell_DEP_01_119_27


title: SCNT_01-cell_DEP_01_119_26


title: SCNT_01-cell_DEP_01_119_28


title: SCNT_01-cell_DEP_01_119_31


title: SCNT_01-cell_DEP_01_119_25


title: SCNT_01-cell_DEP_01_119_23


title: SCNT_01-cell_DEP_01_119_22


title: SCNT_01-cell_DEP_01_119_46


title: SCNT_01-cell_DEP_01_119_44


title: SCNT_01-cell_DEP_01_119_20


title: SCNT_01-cell_DEP_01_119_24


title: SCNT_01-cell_DEP_01_119_18


title: SCNT_01-cell_DEP_01_119_19


title: SCNT_01-cell_DEP_01_119_16


title: SCNT_01-cell_DEP_01_119_14


title: SCNT_01-cell_DEP_01_119_15


title: SCNT_01-cell_DEP_01_119_12


title: SCNT_01-cell_DEP_01_119_11


title: SCNT_01-cell_DEP_01_119_17


title: SCNT_01-cell_DEP_01_119_13


title: SCNT_01-cell_DEP_01_119_10


title: SCNT_01-cell_DEP_01_119_09


title: SCNT_01-cell_DEP_01_119_08


title: SCNT_01-cell_DEP_01_119_07


title: SCNT_01-cell_DEP_01_119_06


title: B6MSM_04-cell_DEP_01_114_44

description:
B6MSM_04cell_log2med.txt.gz
B6MSM_04cell_binary.txt.gz
B6MSM_04cell_B6_haplotype_log2med.txt.gz
B6MSM_04cell_MSM_haplotype_log2med.txt.gz
B6MSM_04cell_B6_haplotype_binary.txt.gz
B6MSM_04cell_MSM_haplotype_binary.txt.gz

value: IVF or ICSI


title: SCNT_01-cell_DEP_01_119_05


title: B6MSM_04-cell_DEP_01_114_40


title: B6MSM_04-cell_DEP_01_114_36


title: B6MSM_04-cell_DEP_01_114_37


title: B6MSM_04-cell_DEP_01_114_35


title: B6MSM_04-cell_DEP_01_114_33


title: SCNT_01-cell_DEP_01_119_02


title: SCNT_01-cell_DEP_01_119_04


title: SCNT_01-cell_DEP_01_119_01


title: B6MSM_04-cell_DEP_01_114_43


title: B6MSM_04-cell_DEP_01_114_31


title: SCNT_01-cell_DEP_01_119_21


title: B6MSM_04-cell_DEP_01_114_41


title: B6MSM_04-cell_DEP_01_114_42


title: B6MSM_04-cell_DEP_01_114_28


title: B6MSM_04-cell_DEP_01_114_27


title: B6MSM_04-cell_DEP_01_114_30


title: B6MSM_04-cell_DEP_01_114_38


title: B6MSM_04-cell_DEP_01_114_25


title: B6MSM_04-cell_DEP_01_114_24


title: B6MSM_04-cell_DEP_01_114_34


title: B6MSM_04-cell_DEP_01_114_23


title: B6MSM_04-cell_DEP_01_114_39


title: B6MSM_04-cell_DEP_01_114_21


title: B6MSM_04-cell_DEP_01_114_32


title: B6MSM_04-cell_DEP_01_114_19


title: SCNT_01-cell_DEP_01_119_03


title: B6MSM_04-cell_DEP_01_114_18


title: B6MSM_04-cell_DEP_01_114_22


title: B6MSM_04-cell_DEP_01_114_20


title: B6MSM_04-cell_DEP_01_114_16


title: B6MSM_04-cell_DEP_01_114_26


title: B6MSM_04-cell_DEP_01_114_17


title: B6MSM_04-cell_DEP_01_114_07


title: B6MSM_04-cell_DEP_01_114_29


title: B6MSM_04-cell_DEP_01_114_12


title: B6MSM_04-cell_DEP_01_114_06


title: B6MSM_04-cell_DEP_01_114_09


title: B6MSM_04-cell_DEP_01_114_13


title: B6MSM_04-cell_DEP_01_114_14


title: B6MSM_04-cell_DEP_01_114_05


title: B6MSM_04-cell_DEP_01_114_11

description:
no haplotype-resolved data
B6MSM_04cell_log2med.txt.gz
B6MSM_04cell_binary.txt.gz
B6MSM_04cell_B6_haplotype_log2med.txt.gz
B6MSM_04cell_MSM_haplotype_log2med.txt.gz
B6MSM_04cell_B6_haplotype_binary.txt.gz
B6MSM_04cell_MSM_haplotype_binary.txt.gz


title: B6MSM_04-cell_DEP_01_114_03


title: B6MSM_04-cell_DEP_01_114_02


title: B6MSM_04-cell_DEP_01_113_61


title: B6MSM_04-cell_DEP_01_114_01


title: B6MSM_04-cell_DEP_01_113_59


title: B6MSM_04-cell_DEP_01_113_60


title: B6MSM_04-cell_DEP_01_113_57


title: B6MSM_04-cell_DEP_01_113_58


title: B6MSM_04-cell_DEP_01_113_56


title: B6MSM_04-cell_DEP_01_113_54


title: B6MSM_04-cell_DEP_01_113_53


title: B6MSM_04-cell_DEP_01_113_52


title: B6MSM_04-cell_DEP_01_114_15


title: B6MSM_04-cell_DEP_01_113_51


title: B6MSM_04-cell_DEP_01_114_08


title: B6MSM_04-cell_DEP_01_113_50


title: B6MSM_04-cell_DEP_01_113_49


title: B6MSM_04-cell_DEP_01_114_10


title: B6MSM_04-cell_DEP_01_113_48


title: B6MSM_04-cell_DEP_01_114_04


title: B6MSM_04-cell_DEP_01_113_45


title: B6MSM_04-cell_DEP_01_113_44


title: B6MSM_04-cell_DEP_01_113_46


title: B6MSM_04-cell_DEP_01_113_47


title: B6MSM_04-cell_DEP_01_113_42


title: B6MSM_04-cell_DEP_01_079_19


title: B6MSM_04-cell_DEP_01_079_15


title: B6MSM_04-cell_DEP_01_079_13


title: B6MSM_04-cell_DEP_01_079_14


title: B6MSM_04-cell_DEP_01_079_11


title: B6MSM_04-cell_DEP_01_079_12


title: B6MSM_04-cell_DEP_01_079_17


title: B6MSM_04-cell_DEP_01_113_55


title: B6MSM_04-cell_DEP_01_079_08


title: B6MSM_04-cell_DEP_01_079_07


title: B6MSM_04-cell_DEP_01_079_04


title: B6MSM_04-cell_DEP_01_079_06


title: B6MSM_04-cell_DEP_01_079_03


title: B6MSM_04-cell_DEP_01_079_02


title: B6MSM_04-cell_DEP_01_079_09


title: B6MSM_04-cell_DEP_01_079_01


title: B6MSM_04-cell_DEP_01_077_24


title: B6MSM_04-cell_DEP_01_077_22


title: B6MSM_04-cell_DEP_01_077_21


title: B6MSM_04-cell_DEP_01_113_43


title: B6MSM_04-cell_DEP_01_079_18


title: B6MSM_04-cell_DEP_01_077_20


title: B6MSM_04-cell_DEP_01_077_18


title: B6MSM_04-cell_DEP_01_079_16


title: B6MSM_04-cell_DEP_01_077_16


title: B6MSM_04-cell_DEP_01_077_23


title: B6MSM_04-cell_DEP_01_077_19


title: B6MSM_04-cell_DEP_01_077_15


title: B6MSM_04-cell_DEP_01_079_10


title: B6MSM_04-cell_DEP_01_077_17


title: B6MSM_04-cell_DEP_01_077_14


title: B6MSM_04-cell_DEP_01_079_39


title: B6MSM_04-cell_DEP_01_079_05


title: B6MSM_04-cell_DEP_01_079_40


title: B6MSM_04-cell_DEP_01_079_38


title: B6MSM_04-cell_DEP_01_079_36


title: B6MSM_04-cell_DEP_01_079_35


title: B6MSM_04-cell_DEP_01_079_33


title: B6MSM_04-cell_DEP_01_079_32


title: B6MSM_04-cell_DEP_01_079_31


title: B6MSM_04-cell_DEP_01_079_30


title: B6MSM_04-cell_DEP_01_079_27


title: B6MSM_04-cell_DEP_01_079_29


title: B6MSM_04-cell_DEP_01_079_34


title: B6MSM_04-cell_DEP_01_079_26


title: B6MSM_04-cell_DEP_01_079_24


title: B6MSM_04-cell_DEP_01_079_25


title: B6MSM_04-cell_DEP_01_079_42


title: B6MSM_04-cell_DEP_01_079_23


title: B6MSM_04-cell_DEP_01_079_22


title: B6MSM_04-cell_DEP_01_077_13


title: B6MSM_04-cell_DEP_01_077_11


title: B6MSM_04-cell_DEP_01_079_20


title: B6MSM_04-cell_DEP_01_079_41


title: B6MSM_04-cell_DEP_01_077_10


title: B6MSM_04-cell_DEP_01_077_09


title: B6MSM_04-cell_DEP_01_077_12


title: B6MSM_04-cell_DEP_01_113_40


title: B6MSM_04-cell_DEP_01_079_37


title: B6MSM_04-cell_DEP_01_113_38


title: B6MSM_04-cell_DEP_01_113_39


title: B6MSM_04-cell_DEP_01_113_41


title: B6MSM_04-cell_DEP_01_113_37


title: B6MSM_04-cell_DEP_01_113_36


title: B6MSM_04-cell_DEP_01_113_35


title: B6MSM_04-cell_DEP_01_079_28


title: B6MSM_04-cell_DEP_01_077_08


title: B6MSM_04-cell_DEP_01_077_07


title: B6MSM_04-cell_DEP_01_077_06


title: B6MSM_04-cell_DEP_01_077_04


title: B6MSM_04-cell_DEP_01_077_05


title: B6MSM_04-cell_DEP_01_079_21


title: B6MSM_04-cell_DEP_01_077_02


title: B6MSM_04-cell_DEP_01_077_01


title: B6MSM_04-cell_DEP_01_070_70


title: B6MSM_04-cell_DEP_01_070_71


title: B6MSM_04-cell_DEP_01_070_69


title: B6MSM_04-cell_DEP_01_070_67


title: B6MSM_04-cell_DEP_01_070_68


title: B6MSM_04-cell_DEP_01_070_65


title: B6MSM_04-cell_DEP_01_070_60


title: B6MSM_04-cell_DEP_01_070_40


title: B6MSM_04-cell_DEP_01_070_59


title: B6MSM_04-cell_DEP_01_070_57


title: B6MSM_04-cell_DEP_01_070_38


title: B6MSM_04-cell_DEP_01_070_36


title: B6MSM_04-cell_DEP_01_070_34


title: B6MSM_04-cell_DEP_01_070_39


title: B6MSM_04-cell_DEP_01_070_35


title: B6MSM_04-cell_DEP_01_070_33


title: B6MSM_04-cell_DEP_01_070_66


title: B6MSM_04-cell_DEP_01_070_31


title: B6MSM_04-cell_DEP_01_070_32


title: B6MSM_04-cell_DEP_01_070_30


title: B6MSM_04-cell_DEP_01_070_37


title: B6MSM_04-cell_DEP_01_113_34


title: B6MSM_04-cell_DEP_01_070_27


title: B6MSM_04-cell_DEP_01_070_25


title: B6MSM_04-cell_DEP_01_070_28


title: B6MSM_04-cell_DEP_01_077_03


title: B6MSM_04-cell_DEP_01_070_19


title: B6MSM_04-cell_DEP_01_070_20


title: B6MSM_04-cell_DEP_01_070_26


title: B6MSM_04-cell_DEP_01_070_29

description:
filtered by MAD score
B6MSM_04cell_log2med.txt.gz
B6MSM_04cell_binary.txt.gz
B6MSM_04cell_B6_haplotype_log2med.txt.gz
B6MSM_04cell_MSM_haplotype_log2med.txt.gz
B6MSM_04cell_B6_haplotype_binary.txt.gz
B6MSM_04cell_MSM_haplotype_binary.txt.gz


title: B6MSM_04-cell_DEP_01_070_17


title: B6MSM_04-cell_DEP_01_070_18


title: B6MSM_04-cell_DEP_01_070_64


title: B6MSM_04-cell_DEP_01_070_63


title: B6MSM_04-cell_DEP_01_070_58


title: B6MSM_04-cell_DEP_01_070_62


title: B6MSM_04-cell_DEP_01_070_56


title: B6MSM_04-cell_DEP_01_070_55


title: B6MSM_04-cell_DEP_01_070_61


title: B6MSM_04-cell_DEP_01_070_54


title: B6MSM_04-cell_DEP_01_070_53


title: B6MSM_04-cell_DEP_01_070_51


title: B6MSM_04-cell_DEP_01_070_50


title: B6MSM_04-cell_DEP_01_070_52


title: B6MSM_04-cell_DEP_01_070_49


title: B6MSM_04-cell_DEP_01_070_46


title: B6MSM_04-cell_DEP_01_070_48


title: B6MSM_04-cell_DEP_01_070_47


title: B6MSM_04-cell_DEP_01_070_45


title: B6MSM_04-cell_DEP_01_070_44


title: B6MSM_04-cell_DEP_01_070_42


title: B6MSM_04-cell_DEP_01_070_41


title: B6MSM_04-cell_DEP_01_070_43


title: B6MSM_04-cell_DEP_01_070_24


title: B6MSM_04-cell_DEP_01_070_21


title: B6MSM_04-cell_DEP_01_070_22


title: B6MSM_04-cell_DEP_01_070_15


title: B6MSM_04-cell_DEP_01_070_16


title: B6MSM_04-cell_DEP_01_070_12


title: B6MSM_04-cell_DEP_01_070_14


title: B6MSM_04-cell_DEP_01_070_11


title: B6MSM_04-cell_DEP_01_070_13


title: B6MSM_04-cell_DEP_01_070_10


title: B6MSM_04-cell_DEP_01_070_09


title: B6MSM_04-cell_DEP_01_070_04


title: B6MSM_04-cell_DEP_01_070_07


title: B6MSM_04-cell_DEP_01_070_06


title: B6MSM_04-cell_DEP_01_070_08


title: B6MSM_04-cell_DEP_01_070_05


title: B6MSM_04-cell_DEP_01_070_03


title: B6MSM_04-cell_DEP_01_070_01


title: B6MSM_04-cell_DEP_01_070_02


title: B6MSM_02-cell_DEP_01_069_37

description:
B6MSM_02cell_log2med.txt.gz
B6MSM_02cell_binary.txt.gz
B6MSM_02cell_B6_haplotype_log2med.txt.gz
B6MSM_02cell_MSM_haplotype_log2med.txt.gz
B6MSM_02cell_B6_haplotype_binary.txt.gz
B6MSM_02cell_MSM_haplotype_binary.txt.gz


title: B6MSM_02-cell_DEP_01_069_35


title: B6MSM_02-cell_DEP_01_069_34


title: B6MSM_02-cell_DEP_01_069_38


title: B6MSM_02-cell_DEP_01_069_36


title: B6MSM_02-cell_DEP_01_069_33


title: B6MSM_02-cell_DEP_01_069_32


title: B6MSM_02-cell_DEP_01_069_30


title: B6MSM_02-cell_DEP_01_069_28


title: B6MSM_02-cell_DEP_01_069_31


title: B6MSM_04-cell_DEP_01_070_23


title: B6MSM_02-cell_DEP_01_069_26


title: B6MSM_02-cell_DEP_01_069_29


title: B6MSM_02-cell_DEP_01_069_25


title: B6MSM_02-cell_DEP_01_069_24


title: B6MSM_02-cell_DEP_01_069_27


title: B6MSM_02-cell_DEP_01_069_23


title: B6MSM_02-cell_DEP_01_069_20


title: B6MSM_02-cell_DEP_01_069_22


title: B6MSM_02-cell_DEP_01_069_18


title: B6MSM_02-cell_DEP_01_069_15


title: B6MSM_02-cell_DEP_01_069_12


title: B6MSM_02-cell_DEP_01_069_19


title: B6MSM_02-cell_DEP_01_069_14


title: B6MSM_02-cell_DEP_01_069_21


title: B6MSM_02-cell_DEP_01_069_16


title: B6MSM_02-cell_DEP_01_069_13


title: B6MSM_02-cell_DEP_01_069_10


title: B6MSM_02-cell_DEP_01_069_11


title: B6MSM_02-cell_DEP_01_069_07


title: B6MSM_02-cell_DEP_01_069_04


title: B6MSM_02-cell_DEP_01_069_08


title: B6MSM_02-cell_DEP_01_069_09


title: B6MSM_02-cell_DEP_01_069_06


title: B6MSM_02-cell_DEP_01_069_02


title: B6MSM_02-cell_DEP_01_069_05


title: B6MSM_02-cell_DEP_01_068_63


title: B6MSM_02-cell_DEP_01_068_62


title: B6MSM_02-cell_DEP_01_069_01


title: B6MSM_02-cell_DEP_01_068_60


title: B6MSM_02-cell_DEP_01_068_61


title: B6MSM_02-cell_DEP_01_068_58


title: B6MSM_02-cell_DEP_01_068_59


title: B6MSM_02-cell_DEP_01_069_17


title: B6MSM_02-cell_DEP_01_068_57


title: B6MSM_02-cell_DEP_01_068_56


title: B6MSM_02-cell_DEP_01_068_55


title: B6MSM_02-cell_DEP_01_068_54


title: B6MSM_02-cell_DEP_01_068_52


title: B6MSM_02-cell_DEP_01_068_53


title: B6MSM_02-cell_DEP_01_068_50


title: B6MSM_02-cell_DEP_01_068_49


title: B6MSM_02-cell_DEP_01_068_48


title: B6MSM_02-cell_DEP_01_069_03


title: B6MSM_02-cell_DEP_01_068_46


title: B6MSM_02-cell_DEP_01_068_45


title: B6MSM_02-cell_DEP_01_068_44


title: B6MSM_02-cell_DEP_01_068_43


title: B6MSM_02-cell_DEP_01_068_42


title: Untreated, new processing, rep 4

city: Utrecht

first: Niels

last: Aerts

state: Utrecht

address: Padualaan 8

department: Biology

country: Netherlands

institute: Utrecht University

data_processing:
Reads were aligned to the Arabidopsis genome (TAIR v10) using TOPHAT v2.0.4 with the settings ‘transcriptome-mismatches 3’, ‘N 3’, ‘bowtie1’, ‘no-novel-juncs’, ‘genome-read-mismatches 3’, ‘p 6’, ‘read-mismatches 3’, ‘G’, ‘min-intron-length 40’, ‘max-intron-length 2000’. Reads were assigned to annotated gene models of TAIR v10 using HTSeq-count v0.6.1 with default settings except ‘-s no’. Normalization was done using the medium count ratio, following the principle applied in the DESeq2 R package.
Assembly: TAIR v10
Supplementary files format and content: Rows: genes, columns: samples

organism: Arabidopsis thaliana

source_name: Leaf 6 of rosette

extract_protocol:
Rneasy plant mini kit (Qiagen) according to the manufacturer's instructions. Included on-column DNAse step.
TruSeq mRNA Stranded Sample Prep Kit (Illumina), according to the manufacturer's instructions.

value: Leaf 6 of rosette

value: Untreated

tag: timepoint


title: ABA, 16 h, rep 2

value: 0.05 mM ABA

value: 16 h after treatment


title: B6MSM_02-cell_DEP_01_068_40


title: B6MSM_02-cell_DEP_01_068_41


title: Untreated, new processing, rep 2


title: ABA, 16 h, rep 3


title: ABA, 16 h, rep 1


title: Untreated, new processing, rep 1


title: B6MSM_02-cell_DEP_01_068_39


title: B6MSM_02-cell_DEP_01_068_38


title: ABA, 12 h, rep 3

value: 12 h after treatment


title: B6MSM_02-cell_DEP_01_068_51


title: B6MSM_02-cell_DEP_01_068_36


title: ABA, 12 h, rep 1


title: B6MSM_02-cell_DEP_01_068_47


title: B6MSM_02-cell_DEP_01_068_37


title: B6MSM_02-cell_DEP_01_068_35


title: ABA, 12 h, rep 2


title: ABA, 10 h, rep 1

value: 10 h after treatment


title: ABA, 8 h, rep 3

value: 8 h after treatment


title: B6MSM_02-cell_DEP_01_068_34


title: ABA, 7 h, rep 2

value: 7 h after treatment


title: B6MSM_02-cell_DEP_01_068_30


title: ABA, 7 h, rep 1


title: B6MSM_02-cell_DEP_01_068_32


title: B6MSM_02-cell_DEP_01_068_31


title: B6MSM_02-cell_DEP_01_068_33


title: B6MSM_02-cell_DEP_01_068_28


title: Untreated, new processing, rep 3


title: ABA, 6 h, rep 2

value: 6 h after treatment


title: ABA, 6 h, rep 3


title: ABA, 7 h, rep 3


title: ABA, 8 h, rep 2


title: ABA, 6 h, rep 1


title: B6MSM_02-cell_DEP_01_068_27


title: ABA, 8 h, rep 1


title: B6MSM_02-cell_DEP_01_068_25


title: B6MSM_02-cell_DEP_01_068_24


title: ABA, 5 h, rep 1

value: 5 h after treatment


title: B6MSM_02-cell_DEP_01_068_29

value: embryo


title: ABA, 4 h, rep 3

value: 4 h after treatment


title: B6MSM_02-cell_DEP_01_068_23

value: in vitro


title: B6MSM_02-cell_DEP_01_068_21


title: B6MSM_02-cell_DEP_01_068_22


title: ABA, 10 h, rep 2


title: ABA, 4 h, rep 2


title: B6MSM_02-cell_DEP_01_068_20


title: ABA, 5 h, rep 2


title: ABA, 4 h, rep 1


title: B6MSM_02-cell_DEP_01_068_26


title: B6MSM_02-cell_DEP_01_068_18


title: ABA, 3 h, rep 2

value: 3 h after treatment


title: ABA, 5 h, rep 3


title: ABA, 3 h, rep 1


title: B6MSM_02-cell_DEP_01_068_17


title: B6MSM_02-cell_DEP_01_068_16


title: ABA, 2 h, rep 1

value: 2 h after treatment


title: ABA, 3 h, rep 3


title: B6MSM_02-cell_DEP_01_068_15


title: ABA, 2 h, rep 2


title: B6MSM_02-cell_DEP_01_068_14


title: ABA, 1.5 h, rep 2

value: 1.5 h after treatment


title: ABA, 2 h, rep 3


title: ABA, 1.5 h, rep 3


title: ABA, 1.5 h, rep 1


title: B6MSM_02-cell_DEP_01_068_12

value: IVF or ICSI


title: ABA, 1 h, rep 3

value: Leaf 6 of rosette

value: 1 h after treatment


title: B6MSM_02-cell_DEP_01_068_13


title: B6MSM_02-cell_DEP_01_068_10


title: B6MSM_02-cell_DEP_01_068_11


title: B6MSM_02-cell_DEP_01_068_09


title: B6MSM_02-cell_DEP_01_068_08


title: ABA, 30 min, rep 3

value: 0.05 mM ABA

value: 30 min after treatment


title: B6MSM_02-cell_DEP_01_068_07


title: ABA, 1 h, rep 2


title: ABA, 1 h, rep 1


title: ABA, 30 min, rep 2


title: B6MSM_02-cell_DEP_01_068_19


title: B6MSM_02-cell_DEP_01_068_05


title: ABA, 30 min, rep 1


title: B6MSM_02-cell_DEP_01_068_04


title: ABA, 15 min, rep 3

value: 15 min after treatment


title: ABA, 15 min, rep 2


title: B6MSM_02-cell_DEP_01_068_02


title: ABA, 15 min, rep 1


title: B6MSM_02-cell_DEP_01_068_03


title: B6MSM_01-cell_DEP_01_067_59

description:
B6MSM_01cell_log2med.txt.gz
B6MSM_01cell_binary.txt.gz
B6MSM_01cell_B6_haplotype_log2med.txt.gz
B6MSM_01cell_MSM_haplotype_log2med.txt.gz
B6MSM_01cell_B6_haplotype_binary.txt.gz
B6MSM_01cell_MSM_haplotype_binary.txt.gz


title: B6MSM_01-cell_DEP_01_067_56


title: B6MSM_01-cell_DEP_01_067_57


title: B6MSM_01-cell_DEP_01_067_55


title: B6MSM_02-cell_DEP_01_068_06


title: B6MSM_01-cell_DEP_01_067_53


title: B6MSM_01-cell_DEP_01_067_54


title: B6MSM_01-cell_DEP_01_067_52


title: Coronary sinus blood sample [PBHF05_002]

type: RNA

city: Nantes

first: Marja

last: Steenman

address: 8 quai Moncousu

country: France

institute: L'institut du thorax

description: Gene expression before placement of CRT-D

hyb_protocol: 600 ng of Cy3-labeled cRNA (specific activity >6.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 µl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 25 µl of 2x Agilent Hi-RPM hybridization buffer was added to the fragmentation mixture and hybridized to Agilent SurePrint G3 Human Gene Expression microarrays (G4851B) for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent). Next, microarrays were washed 30 seconds in acetonitrile and 30 seconds in Stabilization and Drying Solution.

scan_protocol: Slides were scanned immediately after washing on the Agilent G2565CA Microarray Scanner using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3 µm, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.1.1 (Agilent) using default parameters (protocol GE1-107_Sep09 and Grid: 039494_D_F_20120628) to obtain background subtracted and spatially detrended Processed Signal intensities. Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded. Data were normalized using R statistical software. Raw values of all probes on all arrays were normalized against a virtual median chip (median raw intensity per row) using a locally weighted scattered plot smoother analysis (LOWESS). Values for replicate probes were averaged. The data were filtered to remove probes with low intensity values.

organism: Homo sapiens

source_name: Coronary sinus blood

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from100 ng RNA using the Low Input QuickAmp Labeling Kit One-Color (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: The LeukoLOCKTM Fractionation & Stabilization Kit (ThermoFisher) was used to isolate leukocytes and stabilize RNA. Total RNA was isolated using the LeukoLOCKTM Alternative Protocol following manufacturer's instructions. RNA quality was assessed using either an Agilent 2100 Bioanalyzer or an Agilent TapeStation System

value: Whole blood

tag: gender

value: Male

tag: age

tag: cardiopathy

value: ischemic

tag: cardiac rhythm at start of the study

value: Sinus rhythm

tag: cardiac rhythm after 1 year follow-up

value: Atrial fibrillation


title: Coronary sinus blood sample [PBHF05_003]

tag: tissue

value: Female

value: non ischemic


title: Coronary sinus blood sample [PBHF05_013]


title: Coronary sinus blood sample [PBHF05_008]


title: Coronary sinus blood sample [PBHF05_009]


title: B6MSM_01-cell_DEP_01_067_51

value: embryo

value: in vitro

tag: treatment


title: Coronary sinus blood sample [PBHF05_001]


title: Coronary sinus blood sample [PBHF05_004]


title: Coronary sinus blood sample [PBHF04_050]


title: B6MSM_02-cell_DEP_01_068_01


title: B6MSM_01-cell_DEP_01_067_60


title: B6MSM_01-cell_DEP_01_067_49


title: B6MSM_01-cell_DEP_01_067_58


title: Coronary sinus blood sample [PBHF04_048]


title: B6MSM_01-cell_DEP_01_067_48


title: B6MSM_01-cell_DEP_01_067_46


title: B6MSM_01-cell_DEP_01_067_47


title: B6MSM_01-cell_DEP_01_067_45


title: B6MSM_01-cell_DEP_01_067_50


title: Coronary sinus blood sample [PBHF04_045]


title: B6MSM_01-cell_DEP_01_067_43


title: B6MSM_01-cell_DEP_01_067_39


title: B6MSM_01-cell_DEP_01_067_44


title: B6MSM_01-cell_DEP_01_067_38


title: Coronary sinus blood sample [PBHF04_047]


title: Coronary sinus blood sample [PBHF04_042]


title: B6MSM_01-cell_DEP_01_067_41


title: B6MSM_01-cell_DEP_01_067_37


title: Coronary sinus blood sample [PBHF04_052]


title: B6MSM_01-cell_DEP_01_067_40


title: Coronary sinus blood sample [PBHF04_040]


title: B6MSM_01-cell_DEP_01_067_35


title: B6MSM_01-cell_DEP_01_067_42


title: B6MSM_01-cell_DEP_01_067_34


title: Coronary sinus blood sample [PBHF04_035]


title: B6MSM_01-cell_DEP_01_067_33


title: Coronary sinus blood sample [PBHF04_039]


title: B6MSM_01-cell_DEP_01_067_32


title: B6MSM_01-cell_DEP_01_067_31


title: Coronary sinus blood sample [PBHF04_021]


title: B6MSM_01-cell_DEP_01_067_30


title: B6MSM_01-cell_DEP_01_067_36


title: B6MSM_01-cell_DEP_01_067_29


title: Coronary sinus blood sample [PBHF04_031]


title: Coronary sinus blood sample [PBHF04_046]


title: Coronary sinus blood sample [PBHF04_023]


title: Coronary sinus blood sample [PBHF04_026]


title: B6MSM_01-cell_DEP_01_067_28


title: Coronary sinus blood sample [PBHF04_036]


title: Coronary sinus blood sample [PBHF04_013]


title: Coronary sinus blood sample [PBHF04_033]


title: Coronary sinus blood sample [PBHF04_041]


title: Coronary sinus blood sample [PBHF04_020]


title: Coronary sinus blood sample [PBHF04_008]


title: Coronary sinus blood sample [PBHF04_027]


title: Coronary sinus blood sample [PBHF04_012]


title: Coronary sinus blood sample [PBHF04_015]


title: B6MSM_01-cell_DEP_01_067_26


title: Coronary sinus blood sample [PBHF04_024]


title: B6MSM_01-cell_DEP_01_067_27


title: Coronary sinus blood sample [PBHF04_006]


title: B6MSM_01-cell_DEP_01_067_24


title: Coronary sinus blood sample [PBHF04_005]


title: B6MSM_01-cell_DEP_01_067_23


title: B6MSM_01-cell_DEP_01_067_22


title: B6MSM_01-cell_DEP_01_067_21


title: B6MSM_01-cell_DEP_01_067_20


title: B6MSM_01-cell_DEP_01_067_25


title: B6MSM_01-cell_DEP_01_067_19


title: B6MSM_01-cell_DEP_01_067_18


title: B6MSM_01-cell_DEP_01_067_17


title: B6MSM_01-cell_DEP_01_067_16


title: B6MSM_01-cell_DEP_01_067_15


title: B6MSM_01-cell_DEP_01_067_14


title: Coronary sinus blood sample, replicate [PBHF04_002b]


title: B6MSM_01-cell_DEP_01_067_12


title: Coronary sinus blood sample [PBHF03_030]


title: Coronary sinus blood sample, replicate [PBHF03_037b]


title: Coronary sinus blood sample [PBHF03_043]


title: Coronary sinus blood sample [PBHF03_046]


title: Coronary sinus blood sample [PBHF04_002a]


title: Coronary sinus blood sample [PBHF03_037a]


title: Coronary sinus blood sample [PBHF04_001]


title: B6MSM_01-cell_DEP_01_067_10


title: Coronary sinus blood sample [PBHF03_029]


title: Coronary sinus blood sample [PBHF03_016]


title: Coronary sinus blood sample [PBHF03_019]


title: Coronary sinus blood sample [PBHF03_014]


title: B6MSM_01-cell_DEP_01_067_08


title: Coronary sinus blood sample [PBHF03_011]


title: B6MSM_01-cell_DEP_01_067_09


title: Coronary sinus blood sample [PBHF03_013]


title: Coronary sinus blood sample [PBHF03_008]


title: B6MSM_01-cell_DEP_01_067_13


title: B6MSM_01-cell_DEP_01_067_07


title: Coronary sinus blood sample [PBHF03_021]


title: Coronary sinus blood sample [PBHF03_025]


title: Coronary sinus blood sample [PBHF03_023]


title: B6MSM_01-cell_DEP_01_067_06


title: B6MSM_01-cell_DEP_01_067_05


title: B6MSM_01-cell_DEP_01_067_11


title: Coronary sinus blood sample [PBHF03_004]


title: B6MSM_01-cell_DEP_01_067_01


title: B6MSM_01-cell_DEP_01_067_04


title: Coronary sinus blood sample [PBHF03_003]