title: Plaque_8

city: Freiburg

first: Hauke

last: Horstmann

address: Hugstetterstraße 55

institute: University Heart Center Freiburg

data_processing:
Sequencing data were processed using the Cell Ranger Single Cell software suite.
Assembly: hg38 and mm10
Supplementary files format and content: Tab-seperated values and matrix files

source_name: Carotid Plaque

extract_protocol:
Atherosclerotic plaques were enzymatically digested, and leukocytes were analyzed in flow cytometry or by single cell RNA-sequencing (scRNA-seq). Blood samples were collected in trisodium-citrate.
scRNA-seq libraries were prepared using the Chromium Single Cell Library Kit.

value: Carotid Plaque

value: atherosclerosis

value: flow-sorted viable CD45+ cells

value: Illumina NovaSeq 6000


title: Visium, Irf3-/- Day 3 MI (V2), biol rep1

status: Public on Aug 06 2024

type: SRA

city: La Jolla

first: Kevin

middle: Robert

last: King

state: CA

address: 9500 Gilman Dr.

department: Medicine

country: USA

institute: UCSD

library_source: other

data_processing:
The demultiplexing, barcoded processing, gene counting and aggregation were made using the 10x Genomics Cell Ranger software v6.1.1  or Space Ranger v1.3.1
Further processing was done with Seurat v4.3 (cell and gene filtering, hashtag identification, clustering, differential gene expression analysis).
Highly variable gene markers were identified using SCTransform v2 from Seurat R package version 4.3
Assembly: refdata-gex-mm10-2020-A; refdata-gex-GRC38-2020-A
Supplementary files format and content: Tab-separated values files and matrix files

molecule: nuclear RNA

organism: Mus musculus

source_name: Cardiac

extract_protocol:
Sections obtained from mice were imaged and processed for spatially resolved gene expression using the Visium Spatial Transcriptomics kit for Fresh/Frozen samples (10x Genomics). Samples were immediately snap-frozen in OCT using isopentane that was cooled in a liquid nitrogen bath. For cryosectioning, samples were equilibrated to −22 °C. 10 μm thick short axis sections were cut from the blocks onto Visium slides (10X Genomics) and processed according to the manufacturer’s protocol. Tissue permeabilization time was optimized at 30 minutes for infarcted mouse hearts. Hematoxylin and eosin (H&E) images generated during the Visium protocol were captured at 20x magnification on Nikon Eclipse Ti2-E widefield microscope and exported as tiled tiffs for analysis. Libraries were sequenced on the Illumina NovaSeq platform, and resulting data were processed using SpaceRanger (v.1.2.2, 10X Genomics)
Single-nucleus RNA-seq was performed by microfluidic droplet-based encapsulation, barcoding, and library preparation, (10X Genomics). Spatial transcriptomics assays were barcoded based on tissue-covered capture spot and library preparation was performed with 10X Genomics using dual-end indices. Paired end sequencing was performed on an Illumina Novaseq instrument. Low-level analysis, including demultiplexing, mapping to a reference transcriptome (mm10-2020-A or GRCh38-2020-A), and eliminating redundant UMIs, was performed with Cell Ranger 6.1.1 pipeline for 10X samples.

tag: tissue

value: Cardiac

tag: genotype

tag: treatment

value: MI surgery


title: MCF10A, rep1

city: Oslo

first: Roberto

last: Rossini

address: Blindernveien 31

country: Norway

institute: University of Oslo

library_source: genomic

data_processing:
nf-core/hic v2.0.0
Samples were processed using a modified version of nf-core/hic v2.0.0 (see manuscript for more details).
TADs were called using HiCExplorer v3.7.2.
Subcompartments were called using a modified version of dcHiC d4eb244.
TAD cliques were identified using robomics/call_tad_cliques v0.3.1.
Chrom3D simulations were performed using a patched version of Chrom3D v1.0.2.
CNVs were detected using HiNT v2.2.8.
Assembly: hg38
Supplementary files format and content:
TSV containing the list of valid pairwise interactions
CRAM with the alignments produced by nf-core/hic
HIC contact matrix
MCOOL contact matrix
TSV with TADs called at 500kbp resolution
TSV with TADs called at 100kbp resolution
TSV with TADs called at 50kbp resolution
TSV with TADs called at 20kbp resolution
TSV with TADs called at 10kbp resolution
TSV with TADs called at 500kbp resolution (merged replicates)
TSV with TADs called at 100kbp resolution (merged replicates)
TSV with TADs called at 50kbp resolution (merged replicates)
TSV with TADs called at 20kbp resolution (merged replicates)
TSV with TADs called at 10kbp resolution (merged replicates)
TSV with insulation scores at 500kbp
TSV with insulation scores at 100kbp
TSV with insulation scores at 50kbp
TSV with insulation scores at 20kbp
TSV with insulation scores at 10kbp
TSV with insulation scores at 500kbp (merged replicates)
TSV with insulation scores at 100kbp (merged replicates)
TSV with insulation scores at 50kbp (merged replicates)
TSV with insulation scores at 20kbp (merged replicates)
TSV with insulation scores at 10kbp (merged replicates)
HIC contact matrix (merged replicates)
MCOOL contact matrix (merged replicates)
TSV with the mapping report produced by nf-core/hic
BEDGRAPH with the compartment PCA computed at 10kbp
BEDGRAPH with the compartment PCA computed at 20kbp
BEDGRAPH with the compartment PCA computed at 50kbp
BEDGRAPH with the compartment PCA computed at 100kbp
BEDGRAPH with the compartment PCA computed at 200kbp
BEDGRAPH with the compartment PCA computed at 500kbp
BEDGRAPH with the subcompartments computed at 10kbp
BEDGRAPH with the subcompartments computed at 20kbp
BEDGRAPH with the subcompartments computed at 50kbp
BEDGRAPH with the subcompartments computed at 100kbp
BEDGRAPH with the subcompartments computed at 200kbp
BEDGRAPH with the subcompartments computed at 500kbp
TAR file with the IGV report generated by dcHiC at 10kbp
TAR file with the IGV report generated by dcHiC at 20kbp
TAR file with the IGV report generated by dcHiC at 50kbp
TAR file with the IGV report generated by dcHiC at 100kbp
TAR file with the IGV report generated by dcHiC at 200kbp
TAR file with the IGV report generated by dcHiC at 500kbp
BED file with the list of TADs used to compute TAD cliques
TSV with the list of TAD cliques
TAR file containing Chrom3D models
TAR file containing the CNVs called using HiNT

molecule: genomic DNA

organism: Homo sapiens

source_name: mammary gland

growth_protocol: MCF10A, MCF10AT1, and MCF10Ca1a cell lines were grown in DMEM/Nutrient F12 (DMEM/F12) media supplemented with 5% horse serum (MCF10A and MCF10Ca1a) or 2.5% horse serum (MCF10AT1), 14 mM NaHCO3, 10 µg/mL insulin, 2 mM L-glutamine, 20 ng/mL human epidermal growth factor, 500 ng/mL Hydrocortisone and 100 ng/mL cholera Toxin

extract_protocol: HiC Libraries were prepared in duplicates for each cell type using the Arima-HiC+ kit (Arima Genomics, USA) according to manufacturer instructions. For each cell line (10A, T1, C1) 1 million cells were used per HiC reaction. Cells were fixed with 1.2% formaldehyde for 12 min. All subsequent steps were carried out according to the Arima protocol. Resulting libraries were amplified with 5 PCR cycles and sequenced on an Illumina NovaSeq 6000 instrument in paired-end run with 2 x101 bp.

value: mammary gland

tag: cell line

tag: cell type

value: epithelial cell

tag: disease

value: breast cancer


title: 7821-b-total

city: Albany

first: Ramon

last: Bossardi Ramos

state: Ny

address: 43 New Scotland Avenue

department: Department of Molecular and Cellular Physiology

institute: Albany Medical College

description: counts_per_sample_acute_total_brain_041223.csv

library_source: transcriptomic

data_processing:
The gene counts were normalized by rlog transformation and analyzed by the DeSeq2 pipeline. The analyzed DeSeq2 results were uploaded on the web-based application called iPathway Guide and significantly upregulated and downregulated genes and pathways were identified. The log2fold change threshold was >0.6 and the p-value threshold was <0.05 was applied.
Assembly: mm10
Supplementary files format and content: tab-delimited text files log read counts values for each Sample

molecule: polyA RNA

source_name: brain

growth_protocol: Endothelial RNA isolation was performed with modified established TRAP assay protocols(7, 11). Protocol buffer solutions are listed in Supplemental Table. Mice were euthanized with an overdose of pentobarbital. The chest cavity was opened immediately after confirmation of the absence of a paw reflex, and mice were subjected to an intracardiac perfusion with ice-cold HBSS containing 100 μg/ml CHX for 2 minutes at a rate of 5 ml/min. Brains were immediately removed and placed in plates containing 1 ml of dissection buffer and minced with razor blades pre-rinsed with RNAse Away solution. Approximately 100 mg of minced tissue was moved to RNAse-free tubes and lysed using RNAse-free disposable pestles. Samples were then centrifuged at 4 °C, 2000x g for 10 minutes. The supernatant was removed to a new tube and then 1/9 volume of 10% Igepal and 1/9 volume of 300 mM DHPC were added. Tubes were mixed by inversion several times and incubated for 5 minutes on ice. Then, samples were centrifuged at 4 °C 20,000x g for 10 minutes. 50 μl of the supernatant was transferred to a new tube for processing total RNA and the rest was transferred to another new tube for ribosome pulldown for endothelial-specific RNA. For total RNA, 500 μl of Trizol were added to each tube and RNA extraction was conducted with 100 μl of Chloroform. Then supernatant was moved to RNeasy Micro spin columns and an equal volume of 70% EtOH (approx. 350μl) was added to purify RNA by following the manufacturer’s instructions. For the TRAP RNA, supernatants were incubated with prewashed Dynabeads on a nutating rocker for 15 minutes at RT to remove non-specific binding to the beads, and magnets were used for separation. The supernatant was then incubated with Dynabeads bound to anti-EGFP antibodies on a nutating rocker for 45 minutes at 4 °C. Followed by the washes with RNA buffer, the beads reached RT and then incubated for an extra 5 minutes in RLT buffer containing β-mercaptoethano

extract_protocol:
RNA was then purified using RNeasy Micro spin columns following the manufacturer’s instructions.
RNA-seq libraries were prepared using Illumina’s TruSeq protocol

treatment_protocol: Acute systemic inflammation was induced by a single IP injection of 250μg LPS dissolved in 200μl of sterile saline solution. Control mice were injected with 200μl of sterile saline solution

value: brain

value: total cells

value: wt

value: LPS


title: 7440-b-total


title: Plaque_7

country: Germany

library_source: transcriptomic single cell

molecule: total RNA


title: ptcMPD_TS1

city: Toronto

first: Liam

middle: D

last: Hendrikse

state: Ontario

address: 610 University Ave

department: Princess Margaret Cancer Centre

country: Canada

institute: University Health Network

data_processing:
Quality of reads assessed by FastQC tool
The reads were aligned to the mouse reference genome GRCm38.p6 using Star aligner
RNA-Seq reads were counted using HtSeq and differential expression was analysed by DEseq2
Assembly: Gencode (Version M25 / GRCm38.p6)
Supplementary files format and content: count matrix (.txt file)

organism: Mus

source_name: Tumour

extract_protocol:
The total RNA was extracted with RNeasy kit (Qiagen, 74004) as per manufacturers instructions
RNA converted into cDNA library using TruSeq Stranded Total RNA kit (Illumina) using manufacturers instructions.

value: Tumour


title: 7439-b-total

value: ko


title: ptcMPD_TP4


title: Visium, Irf3-/- Day 3 I/R (V4)

value: 30 min I/R surgery


title: Visium, Ccr2-/- Day 3 MI (V17), biol rep1


title: Plaque_6


title: ptcMPD_TP3


title: 7419-b-total


title: 7437-b-total

value: saline


title: Visium, Ccr2-/- Day 3 MI (V19), biol rep2


title: Visium, WT Day 28 MI (V27)

value: WT


title: Plaque_4

value: Carotid Plaque

value: atherosclerosis


title: ptcMPD_TP1


title: 7441-b-total


title: Plaque_3

value: flow-sorted viable CD45+ cells

value: Illumina NovaSeq 6000


title: 7417-b-total


title: Visium, WT Day 7 MI (V43), biol rep2

value: Cardiac

value: MI surgery


title: 6957-b-total


title: D12 T1 unstimulated

type: RNA

city: Augsburg

first: Lukas

last: Page

state: Bavaria

address: Stenglinstrasse 2

department: Institute for Laboratory Medicine and Microbiology

institute: University Hospital of Augsburg

description: nCounter Immune Exhaustion Panel Reporter CodeSet

hyb_protocol: Hybridisation was performed for 16-24 h at 65 °C.

scan_protocol: 17 µL water was added to the hybridized samples. 30 µL of each sample was loaded onto a Nanostring nCounter Sprint Cartridge and analyzed using an nCounter Sprinter device (Nanostring, Seattle, USA).

data_processing:
Data was analyzed using the nSolver Analysis Software (Nanostring, Seattle, USA), with background thresholding to the median of negative controls and normalization to the panel’s 12 internal reference genes (geometric mean).
mRNA counts normalized to internal reference genes by the nSolver Analysis Software (Nanostring, Seattle, USA).

source_name: Whole blood - 24 hours - 37°C - anti-CD28+anti-CD49d

label_protocol: Hybridisation with labelled probes was performed according to the manufacturer's instructions (Nanostring, Seattle, USA): RNA concentration was normalized to 50 ng in 5 µL water. The lyophilyzed Reporter Code set was reconstitued using 70 µL Hybridisation Buffer. 50 ng of RNA was mixed with 8 µL of Reporter Codeset solution and 2 µL of (ready-to-use) Capture Probe Set.

growth_protocol: Not applicable

extract_protocol: Total RNA was isolated using the RNeasy Plus Mini Kit according to the manufacturer's instructions (Qiagen, Hilden, Germany).

treatment_protocol: As published previously (Lauruschkat et al., 2021, J Fungi), 2.7-mL blood collection tubes without anticoagulant were pre-loaded with co-stimulatory antibodies α-CD28 and α-CD49d (10 µg/mL, Miltenyi Biotec, Bergisch Gladbach, Germany) plus either no antigen (negative control) or SARS-CoV-2 spike peptides (Prot_S, 0.6 nmol per peptide/mL, Miltenyi Biotec, Bergisch Gladbach, Germany). 0.5 mL blood lithium-heparin blood was added and stimulation tubes were incubated for 20 – 24 h at 37 °C. Samples were transferred to 1.5 mL tubes and centrifuged at 2000 g for 20 min. After preservation of the supernatant for LegendPlex cytokine assays, the residual cell pellet underwent erythrocyte lysis using Buffer EL (Qiagen, Hilden, Germany) and was then cryopreserved in 1 mL RNAprotect buffer (Qiagen, Hilden, Germany).

value: Whole blood

tag: date 1st dose bnt162b2

tag: date 2nd dose bnt162b2

tag: date 3rd dose bnt162b2 (booster)

tag: date timepoint 0 (pre-booster)

tag: date timepoint 1 month post-booster

tag: date timepoint 3 months post-booster

tag: date timepoint 6 months post-booster

tag: gender

value: Female

tag: age at timepoint 0


title: Visium, WT Day 7 MI (V44), biol rep3


title: P20-2

city: Xianmen

first: Yuchen

last: Liu

address: Xiangan South Road

country: China

institute: Xianmen University

description: Transcriptomic profiling of human alveolar organoids(hALOs)

data_processing:
Base calling uses the software Bcl2fastq (v2.17.1.14) to analyze the original image of the sequencing result
Sequence reads were trimmed for adaptor sequences, and masked for low-complexity or low-quality sequence using trim_galore (v0.6.7)
Trimmed sequence reads were mapped to GRCh38/hg38 using STAR (v2.7.9a)
Assembly: hg38
Supplementary files format and content: tab-delimited text files with raw counts for each sample

source_name: hESC-drived alveolar organoids

growth_protocol: Alveolar organoids were culture in Matrigel and maintained in medium containing dexamethasone, 8-Br-cAMP, 3-isobutyl-1-methylxanthine,  KGF,  CHIR99021, and SB431542

extract_protocol:
Alveolar organoids were differentiated from H9 hESCs in a stepwise protocol.
1 μg total RNA was used for following library preparation. The poly(A) mRNA isolation was performed using Oligo(dT) beads. The mRNA fragmentation was performed using divalent cations and high temperature. Priming was performed using Random Primers. First strand cDNA and the second-strand cDNA were synthesized. The purified double-stranded cDNA was then treated to repair both ends and add a dA-tailing in one reaction, followed by a T-A ligation to add adaptors to both ends. Size selection of Adaptor-ligated DNA was then performed using DNA Clean Beads. Each sample was then amplified by PCR using P5 and P7 primers and the PCR products were validated.

value: hESC-drived alveolar organoids

tag: developmental stage

value: wild type


title: D24 T1 unstimulated


title: Visium, WT Day 7 MI (V18), biol rep1


title: 6618-b-total

value: brain

value: total cells


title: Plaque_2


title: Visium, WT Day 3 I/R (V3)


title: Plaque_1


title: D12 T1 Prot_S stimulated

source_name: Whole blood - 24 hours - 37°C - anti-CD28+anti-CD49d+SARS-CoV-2 Prot_S


title: Visium, WT Day 3 MI Female (V26), biol rep2


title: Visium, WT Day 3 MI Female (V25), biol rep1


title: 7418-b-total

value: LPS


title: 6616-b-total

value: ko


title: Plaque_5


title: 6719-b-total


title: P20-1


title: 6717-b-total


title: D24 T1 Prot_S stimulated


title: D08 T1 unstimulated


title: D08 T1 Prot_S stimulated


title: P13-2


title: P13-1


title: D20 T1 unstimulated


title: Visium, WT Day 3 MI (V37), biol rep2


title: P4-1


title: 6593-b-total

value: wt


title: Visium, WT Day 3 MI (V1), biol rep1


title: Visium, WT Day 1 MI (V28)


title: P4-2


title: 6450-b-total

value: saline


title: D23 T1 unstimulated


title: D20 T1 Prot_S stimulated


title: Visium, WT Sham biol rep2, Needle Pass biol rep3 rep4 (V40)

value: WT

value: Sham surgery; Traumatic Needle


title: Visium, Irf3-/- Day 3 MI (V33), biol rep2


title: Visium, WT Day 3 MI (V38), biol rep3


title: 6449-b-total


title: BG-HFO 33.10

city: Hannover

first: Robert

last: Zweigerdt

state: Germany

address: Carl-Neuberg-Str. 1

department: LEBAO

institute: Medizinische Hochschule Hannover (MHH)

description: 10x Genomics

data_processing:
The 10x Genomics CellRanger analysis pipeline set (v7.0.0) was used with default parameters. Briefly, BCL files were demultiplexed into FASTQ files by cellranger mkfastq using the respective sample sheet with utilized 10X barcodes. The cellranger count pipeline was used to align read data to the reference genome provided by 10X Genomics (Human reference dataset refdata-gex-GRCh38-2020-A), counting aligned reads per gene with intronic reads included in the count matrix, and calculating clustering and summary statistics.
Assembly: refdata-gex-GRCh38-2020-A (10X Genomics)
Supplementary files format and content: Cellranger filtered_feature_bc_matrix

source_name: cardiac, endothelial, mesenchymal and hematopoietic tissue from organoids

growth_protocol: Aggregates of PSCs were embedded in Matrigel and cardiac-vasculo-hematopoietic co-differentiation was mediated by bi-phasic modulation of WNT pathway and addition of hemato-endothelial-driving cytokines and growth factors

extract_protocol:
For the Single-cell analysis 2 BG-HFOs were used. The selected samples were individually washed in PBS w/o, dissociated with 100 µl Cardiomyocites Dissociation Medium for 12 min at 37 °C. Afterwards, the organoids were individually washed with 3 times the volume of RB+ medium, cells were counted and resuspended in order to have for each sample 20.000 cells/ 65 µl of PBS w/o with 0,04% BSA and 10 μM Y-27632
Library preparation for single cell mRNA-Seq analysis was performed according to the Chromium NextGEM Single Cell 3ʹ Reagent Kits v3.1 User Guide (Manual Part Number CG000204 Rev B; 10x Genomics). Generated mRNA expression libraries were pooled, and sequenced on an Illumina NovaSeq6000 sequencer using one S4 (300 cycles) Flowcell by Novogene. Sequencing was performed according to the following settings: 150bp as sequence read 1 and 2; 8bp as index read 1; no index read 2. Two sequencing runs were conducted to reach a final coverage of around 40,000 mean reads per cell.

value: hES3 NKX2.5-eGFP

value: cardiomyocytes, endothelial cells, hematopoietic derivatives and mesenchymal cells


title: 6447-b-total


title: D11 T1 unstimulated


title: BG-HFO 32.7

description: 10x Genomics

value: cardiac, endothelial, mesenchymal and hematopoietic tissue from organoids


title: 7835-endo-b

description: counts_per_sample_acute_trap_brain_031723.csv

data_processing:
The gene counts were normalized by rlog transformation and analyzed by the DeSeq2 pipeline. The analyzed DeSeq2 results were uploaded on the web-based application called iPathway Guide and significantly upregulated and downregulated genes and pathways were identified. The log2fold change threshold was >0.6 and the p-value threshold was <0.05 was applied.
Assembly: mm10
Supplementary files format and content: tab-delimited text files log read counts values for each Sample
Library strategy: TRAP-seq

value: endothelium


title: WT_D3_nuclei3

description:
10X Genomics
WT_D3_nuclei3

data_processing:
The alignments, filtering, and demultiplexing of generated fastq files were run with the 10X Genomics Cell Ranger analysis pipeline using standard configurations (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger).
Variations in sequencing depth were accounted for by normalization with Seurat’s SCTransform v2, based on negative binomial models which utilize a lower bound on the gene-level standard deviations.
Multiple single-cell RNA-seq datasets were integrated in Seurat to allow harmonized clustering and downstream analysis across conditions. Anchoring cell pairs between the datasets were identified with Canonical Correlation Analysis (CCA) and Mutual Nearest Neighbors (MNN) methods with the Seurat FindIntegrationAnchors function.
After scaling and centering expression values for each variable gene, the integrated data underwent linear dimensionality reduction using principal component analysis (PCA). Clustering was performed through the Shared Nearest Neighbor (SNN) clustering algorithm with Louvain method for modularity optimization using the Seurat FindNeighbors and FindClusters functions. Two-dimensional data visualization was done by performing Uniform Manifold Approximation and Projection (UMAP) demensional reduction, and differentially expressed genes (DEGs) between clusters were identified with the Wilcoxon Rank Sum test. Wherever specified, subsets of cells were bioinformatically isolated and reclustered to identify DEGs.
Assembly: refdata-gex-mm10-2020-A
Supplementary files format and content: Tab-separated values files and counts matrix files consisting of matrix.mtx, features.tsv, barcodes.tsv

source_name: Left Ventricle

extract_protocol:
For whole cell suspensions, freshly harvested hearts were enzymatically digested prior to filtering and flow cytometry sorting. Nuclei were isolated from fressh frozen tissue, minced and lysed, then filtered priored to collection.
Single cell and nuclei libraries were prepared according to standard 10X Genomics protocols
Dual index Illumina single cell RNA sequencing

value: Left Ventricle

tag: strain

value: Wild Type

value: left anterior descending artery permanent ligation


title: Visium, WT Sham biol rep1, Needle Pass biol rep1 rep2 (V39)

tag: tissue

value: Cardiac


title: 6452-b-total

tag: genotype


title: D11 T1 Prot_S stimulated

value: Whole blood

value: Female


title: WT_D3_nuclei2

description:
10X Genomics
WT_D3_nuclei2

tag: treatment


title: HDF1_shAR_LamAC ChIP-Seq

city: Epalinges

first: Soumitra

last: Ghosh

state: Choose State/Province

address: Chemin des Boveresses 155

department: Biochemistry

country: Switzerland

institute: University of Lausanne, Switzerland

data_processing:
Raw Reads were generated from the original raw data from Illumina platform by base calling of CASAVA.
The trimming of adapter sequences and filtering of low quality sequences was carried out using Skewer software. The procedure included discarding the reads with a mean quality lower than 20, discarding the reads with an N ratio (unsure base)   larger than 15%, discarding the reads with adaptor, trimming the adapter sequence at the 3’- and 5’end, and discarding the reads whose length were less than 18nt after trimming.
ChIP-seq reads were aligned to the UCSC hg38 genome using BWA. Only uniquely mapping reads with at most two mismatches were retained.
To create ChIP-seq coverage plots, the locations of the mapped ChIP-seq reads were extended to 150 bp to represent sequenced fragments, renormalized (to reads per million, rpm) and reformatted in the bigWig file format.
Peaks were called uing MACS v2.1.0
bigWig files were generated using the genomicRanges R package. Score represents the normalized coverage of DNA fragments at a given genomic coordinate.
For detection of lamin A/C associated with large genome regions (LADs), we used the Enrichment Domain Detector (EDD), a tool developed for the analysis of broad enrichment domains from ChIP-seq data (PMID: 24782521). Mapped reads from BAM files were used to call LADs, with auto-estimation of GapPenalty. Log ratios between Input and ChIP samples were computed using a BinSize of 10 Kb, with the human genome hg38 as reference assembly. The peaks were retrieved with a FDR p-value of 0.05.
Assembly: hg38
Supplementary files format and content: bigWig, Bedgraph (for LADs, except input)

growth_protocol: DMEM, 10% fetal bovine serum, 2mM glutamine, 1x penicillin/streptomycin. Cells were cultured at 37C at 5% CO2.

extract_protocol:
Cells were lysed and chromatin was prepared using the Diagenode Chromatin EasyShear Kit - High SDS (Cat# C01020012). Chromatin was sheared using the Bioruptor with 4 rounds of 10 cycles of 30 seconds “ON” / 30 seconds “OFF” at HIGH power setting (position H). The chromatin fractions were diluted and ChIP reactions were carried out using anti-Lamin A/C antibodies using the Diagenode kit as recommended.
Library preparation were carried out using NEBNext ChIP-seq Library Prep Reagent Set for Illumina (E6200) as per the manufacture’s protocol

treatment_protocol: HDF cells were transduced with either control or AR targeting shRNA expressing lentiviruses and selected with puromycin. 6 Days post-transduction, cells were cross-linked formaldehyde a final concentration of 1% for 10 min at RT. The reaction was quenched using the addition of glycine (final concentration 125 mM). Cells were washed with ice-cold PBS and collected by centrifugation (400g).

tag: cell line

value: Human dermal fibroblasts

tag: chip antibody

value: Lamin A/C (Abcam, #ab108595)


title: HDF1_shAR_inpt

tag: cell type


title: D25 T1 unstimulated

tag: date 1st dose bnt162b2


title: D25 T1 Prot_S stimulated

tag: date 2nd dose bnt162b2


title: HDF1_Ct_LamAC ChIP-Seq


title: 7832-endo-b

value: brain


title: WT_D3_nuclei1

description:
10X Genomics
WT_D3_nuclei1


title: Irf3KO_D3_nuclei3, biol rep3

description:
10X Genomics
Irf3KO_D3_nuclei3, biol rep3


title: 7822-endo-b

value: wt


title: HDF1_Ct_inpt


title: D23 T1 Prot_S stimulated

tag: date 3rd dose bnt162b2 (booster)


title: Irf3KO_D3_nuclei2, biol rep2

description:
10X Genomics
Irf3KO_D3_nuclei2, biol rep2


title: D04 T1 unstimulated

tag: date timepoint 0 (pre-booster)


title: D04 T1 Prot_S stimulated

tag: date timepoint 1 month post-booster


title: 7834-endo-b

value: LPS


title: Irf3KO_D3_nuclei1, biol rep1

description:
10X Genomics
Irf3KO_D3_nuclei1, biol rep1


title: 7816-endo-b


title: HDF1_Ctrl_ATAC

data_processing:
The ATAC-seq data analysis was conducted by performing quality control using FastQC and trimming and filtering the raw data. This included removing adapter sequences, low-quality reads (which had a mean quality lower than 20, an N ratio larger than 15%, adapters, or a length of less than 18nt after trimming) , and trimming adapter sequences on the 3’-end.
The reads were aligned to the human reference genome (GRCh38/hg38) using BWA (Li, H. and R. Durbin, 2009).
Following the alignment, peaks were called using the MACS2 algorithm.
The distribution of peak over various functional areas were analyzed by ChIPseeker software.
Assembly: GRCh38/hg38
Supplementary files format and content: bigWig

growth_protocol: DMEM, 15% fetal bovine serum, 2mM glutamine, 1x penicillin/streptomycin. Cells were cultured at 37C at 5% CO2.

extract_protocol:
ATAC-seq was performed as previously reported (Buenrostro et al. 2013;Corces et al. 2017; Bajic M et al. 2018). Briefly, nuclei were extracted from 50,000 cells, and the nuclei pellet was resuspended in the Tn5 transposase (Diagenode, Cat# C01070012-30) reaction mix. The transposition reaction was incubated at 37°C for 30 min; at the end of the reaction, DNA fragments were cleaned up and isolated with MinElute Reaction Cleanup Kit (Qiagen, Cat # 28204). The purified DNA fragments were quantified using Qubit and subjected to library preparation.
ATAC-seq library preparation was carried out by PCR amplification of purified DNA fragments using Diagenode primer indexes (Diagenode, Cat# C01011034). The amplification cycles were adjusted and the libraries were purified using the AMPure beads and library quality was assessed using Qubit and Bioanalyzer. T

treatment_protocol: HDF cells were transduced with either control or AR targeting shRNA expressing lentiviruses and selected with puromycin. 6 Days post-transduction, cells were harvested, cell viability was detected with Trypan blue assay and counted.

value: Cells infected with control shRNA


title: MB002-shPRTG_R2

data_processing:
Quality of reads assessed by FastQC tool
The reads were aligned to the human reference genome using Star aligner
RNA-Seq reads were counted using HtSeq and differnetial expression was analysed by DEseq2
Assembly: GRCh38
Supplementary files format and content: count matrix (txt.file)

source_name: Human MB002 group 3 medulloblastoma cell line

growth_protocol: All cells were maintained in serum-free Neurocult media as suspension culture

value: shPRTG


title: D13 T1 unstimulated

tag: date timepoint 3 months post-booster


title: WT_D4_WC4, biol rep4

description:
10X Genomics
WT_D4_WC4, biol rep4

molecule: cytoplasmic RNA

value: left anterior descending artery ligation with reperfusion


title: MB002-shPRTG_R1

value: Human MB002 group 3 medulloblastoma cell line


title: 7441-endo-b

value: ko

value: saline


title: 7440-endo-b

value: endothelium


title: D13 T1 Prot_S stimulated

tag: date timepoint 6 months post-booster


title: WT_D4_WC3, biol rep3

description:
10X Genomics
WT_D4_WC3, biol rep3

value: Left Ventricle

value: Wild Type


title: D18 T1 unstimulated

tag: gender


title: MB002-shNT_R2

value: shNT


title: WT_D4_WC2, biol rep2

description:
10X Genomics
WT_D4_WC2, biol rep2

value: left anterior descending artery permanent ligation


title: MB002-shNT_R1


title: WT_D4_WC1, biol rep1

description:
10X Genomics
WT_D4_WC1, biol rep1


title: 7821-endo-b


title: D425-shPRTG_R2

source_name: Human D425 group 3 medulloblastoma cell line


title: IfnarKO_D4_WC2, biol rep2

description:
10X Genomics
IfnarKO_D4_WC2, biol rep2

value: IFNAR -/-


title: 7437-endo-b


title: 7443-endo-b


title: HDF1_shAR_ATAC

value: Human dermal fibroblasts

value: Cells infected with anti-AR shRNA


title: IfnarKO_D4_WC1, biol rep1

description:
10X Genomics
IfnarKO_D4_WC1, biol rep1


title: D29 T1 unstimulated

value: Whole blood

value: Male

tag: age at timepoint 0


title: 7418-endo-b

value: brain

value: LPS


title: D425-shPRTG_R1

value: Human D425 group 3 medulloblastoma cell line

value: shPRTG


title: adv_Wt

source_name: aortic lesion

value: aortic lesion

tag: disease

value: atherosclerosis

value: flow-sorted viable CD45+ cells

value: Illumina NovaSeq 6000


title: D425-shNT_R2


title: D29 T1 Prot_S stimulated


title: 7419-endo-b

value: endothelium

value: ko


title: adv_ApoE


title: D425-shNT_R1

value: shNT


title: D01 T1 Prot_S stimulated

value: Female


title: D01 T1 unstimulated


title: hasty-KO_low N_bio rep3

city: Bunkyo-ku

first: Yasuhito

last: Sakuraba

state: Tokyo

address: Yayoi 1-1-1

department: Agro-Biotechnology Research Center

country: Japan

institute: The University of Tokyo

data_processing:
Data processing includes the following steps: (1) remove the adapter sequences, (2) remove the 5 'or 3' end bases that contains N's or of quality values below 20, (3) remove bases with average quality score below 20 using the sliding window of 4bp, (4) remove reads that are less than 18 bp long after trimming
Assembly: mm10
Supplementary files format and content: Matrix files

organism: Arabidopsis thaliana

source_name: Shoot tissues

extract_protocol:
RNA was prepared using the Maxwell RSC RNA kit (Promega) following the manufacturer's recommendations.
1μg total RNA or 10ng small RNA was used for library preparation. 3 ´SR Adaptor for Illumina was ligated to the small RNA using 3´ Ligation Enzyme. To prevent adaptor-dimer, the excess of 3 ´SR Adaptor were hybrid with SR RT Primer for Illumina. 5 ´SR Adaptor for Illumina was ligated to the small RNA using 5´ Ligation Enzyme and first strand cDNA was synthesized using ProtoScript II Reverse Transcriptase. Each sample was then amplified by PCR using P5 and P7 primers, the PCR product were purified by DNA clean beads.

treatment_protocol: Shoot tissues from 10 day-old Col-0 WT and hasty KO mutants that were initially grown under standard nutrient conditions for 5 days and then grown under low nitrogen conditions for 5 days

value: Shoot tissues

value: hasty-KO

value: low N


title: 7417-endo-b


title: hasty-KO_low N_bio rep2


title: Med411FH-shPRTG_R2

source_name: Human Med411FH group 3 medulloblastoma PDX line


title: 6957-endo-b

value: wt


title: 7439-endo-b


title: hasty-KO_low N_bio rep1


title: baseline_ApoE


title: 6719-endo-b


title: MRD-HCC 1

city: Stanford

first: Renumathy

last: Dhanasekaran

address: 300 Pasteur Drive, Alway M211

institute: Stanford University

data_processing:
Clean reads were analyzed with mouse reference genome mm10-2020-A using Cell Ranger v5.0
Assembly: mm10-2020
Supplementary files format and content: TSV and matrix files

source_name: Liver

extract_protocol:
We isolated nuclei from frozen mouse liver tissue
Constructed 3’ single cell gene expression libraries (Next GEM v3.1) using the 10x Genomics Chromium system
The library was sequenced on Illumina NovaSeq (PE150).

value: Liver

tag: disease state

value: HCC


title: WT_low N_bio rep3

tag: tissue

value: WT


title: D18 T1 Prot_S stimulated

value: Whole blood


title: Med411FH-shNT_R2

value: Human Med411FH group 3 medulloblastoma PDX line


title: MRD-HCC 2


title: Med411FH-shNT_R1


title: WT_low N_bio rep2

tag: genotype


title: 6717-endo-b

value: brain

tag: treatment

value: saline


title: WT_low N_bio rep1


title: 6616-endo-b

value: LPS


title: 6618-endo-b


title: mouse_OE_3

city: Nanjing

first: Xiaoli

last: Min

address: No.4 Jiang Wang Temple Street

institute: Chinese Academy of Medical Sciences and Peking Union Medical College

data_processing:
RNA integrity was assessed using the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system
Quality control Raw data (raw reads) of fastq format were firstly processed through in-house perl scripts
All the downstream analyses were based on the clean data with high quality The featureCounts v1.5.0-p3 was used to count the reads numbers mapped to each gene.
Differential expression analysis of two conditions/groups (two biological replicates per condition) was performed using the DESeq2 R package (1.20.0)
DESeq2 provided statistical routines for determining differential expression in digital gene expression data using a model based on the negative binomial distribution.
Assembly: mm10
Supplementary files format and content: tab-delimited text files include counts for each Sample

source_name: PMAs

growth_protocol: PMAs in DMEM  supplemented with 10% fetal bovine serum (FBS) and antibiotics in humidified atmosphere with 5% CO2 at 37C

extract_protocol:
RNA was harvested using Trizol was used for the construction of sequencing libraries.
RNA libraries for RNA-seq were prepared using VAHTS Stranded mRNA-seq Library Prep Kit for Illumina

tag: cell line

value: PMAs

value: macrophage

value: Rfx1 overexpression


title: hasty-KO_control_bio rep3

value: control


title: mouse_OE_2


title: Med411FH-PRTGneg

data_processing:
Cell Ranger pipeline (v3.1.0) was used to obtain gene read counts matrices from fastq
Seurat Read10X function to generate count matrix
Assembly: hg19 v3.0.0
Supplementary files format and content: count matrix (txt. File)

growth_protocol: Cells were grown and passaged in vivo as PDXs in immune compromised (NSG) mice

extract_protocol:
Fresh tumor was dissociated into single cell suspension using enzyme free solution as described previously (Vladiou et al., 2019)
single-cell libraries were constructed followed by reverse-transcription and cDNA amplification of barcoded transcripts with Chromium Single Cell 3′ Library kit and Chromium i7 Multiplex kit (10X Genomics)

treatment_protocol: Dissociated single cell suspension was flow-sorted after PRTG surface staining


title: 6593-endo-b

value: endothelium


title: Med411FH-shPRTG_R1

value: shPRTG


title: Med211FH-PRTGneg

source_name: Human Med211FH group 3 medulloblastoma PDX line


title: Med411FH-PRTGpos


title: mouse_OE_1


title: 6450-endo-b

value: ko


title: 6452-endo-b


title: hasty-KO_control_bio rep1

value: Shoot tissues

value: hasty-KO


title: hasty-KO_control_bio rep2


title: Med211FH-PRTGpos

value: Human Med211FH group 3 medulloblastoma PDX line


title: WT_control_bio rep3


title: mouse_NC_2

value: Negetive control


title: Med114FH-PRTGneg

source_name: Human Med114FH group 3 medulloblastoma PDX line


title: 6449-endo-b

value: wt


title: 6447-endo-b


title: Med114FH-PRTGpos

value: Human Med114FH group 3 medulloblastoma PDX line


title: WT_control_bio rep2

value: WT


title: WT_control_bio rep1


title: MYC-HCC Residual tumor cells in vitro

data_processing:
Clean reads were analyzed with mouse reference genome mm10-2020-A using Cell Ranger v5.0
Assembly: mm10-2019
Supplementary files format and content: H5 file

source_name: liver

extract_protocol:
Vialble dormant tumor cells used for scRNAseq.
3’ single cell library construction using the 10x chromium system
The resulted library was sequenced with Illumina Hiseq X10 platform at 150PE with 400 million read pairs.

treatment_protocol: MYC-HCC clonal primary celll line treated with doxycyline for one week to inactivate the MYC oncogene.

value: liver

value: MYC-HCC clonal primary celll line


title: mouse_NC_1


title: Dual4_DEN

status: Public on Aug 05 2024

city: College Station

first: MICHAEL

middle: C.

last: GOLDING

state: Texas

address: 4466 TAMU

department: Physiology

institute: Texas A&M UNiversity

data_processing:
FastQC
MuliQC
RNA Star
FeatureCounts
DESeq2
Assembly: mm39
Supplementary files format and content: Count Matrix

extract_protocol:
QIAGEN RNeasy Mini Kit
rRNA depletion
RNA-Seq (Illumina sequencing of 30M pair)

value: Liver


title: Dual1_DEN


title: Dual2_DEN


title: Dual3_DEN


title: Maternal2_DEN


title: Maternal1_DEN


title: Maternal4_DEN


title: Maternal3_DEN


title: Paternal4_DEN


title: Paternal1_DEN


title: Paternal3_DEN


title: Control3_DEN


title: Control1_Saline


title: Control4_Saline


title: Control1_DEN


title: Control2_DEN


title: Control3_Saline


title: P044_7B79_V2_Epigenetics

type: genomic

city: Boston

first: Ofer

last: Levy

state: MA

address: 300 Longwood Avenue

department: Infectious Disease

institute: Boston Children's Hospital

description:
Vaccination: Delayed - Visit 2 collected at day 1
P044_7B79_V2

hyb_protocol: Samples were normalised to ~250ng DNA in 45uL and bisulfite converted using Zymo EZ-96 DNA Methylation Kit..  Used Illumina Human Methylation EPIC BeadChip following the Illumina Infinium HD Methylation Assay

scan_protocol: Arrays were imaged using BeadArray Reader (HiScan) and the standard recommended Illumina scanner setting.

data_processing:
Raw .idat files were read into an R statistical environment using the minfi package. Using the minfi package in R, Sample QC was performed, and failed samples were removed from analysis.  Probe level QC was performed, and poorly performing probes and known blacklist probes were removed.
Data was SQN normalised, and Beta and M values obtained, using the minfi package in R.

label: Cy3 and Cy5

source_name: Blood

label_protocol: standard Illumina Protocol

extract_protocol: Extration method used the Chemagic low volume blood kit, Bead based, Chemagic DNA 400 kit H96 (Cat# CMG-1491), where 1.5ug DNA was extracted from whole blood and send to AGRF Genotyping Service.

tag: Sex

value: Female

tag: race

value: Eastern Highland

tag: ethnicity

value: Other Pacific Islander

value: Blood

value: Whole blood


title: Control4_DEN


title: Control2_Saline


title: P043_3S86_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
P043_3S86_V1

tag: cell type


title: P043_1K57_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
P043_1K57_V2


title: P039_1M41_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
P039_1M41_V2


title: P038_6T47_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
P038_6T47_V2

value: Male


title: P038_3B01_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
P038_3B01_V1


title: P035_3T12_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
P035_3T12_V2


title: G765K_6J07_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G765K_6J07_V1

value: Fula

value: African


title: G765K_5S64_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G765K_5S64_V2


title: G764F_9A81_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G764F_9A81_V2

value: Mandinka


title: G763H_3F05_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G763H_3F05_V1

value: Others


title: G763H_5K04_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G763H_5K04_V2


title: P034_5F69_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
P034_5F69_V1


title: G764F_6B97_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G764F_6B97_V1


title: G762B_6R37_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G762B_6R37_V2

value: Jola


title: G762B_1U79_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G762B_1U79_V1


title: G761D_2K90_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G761D_2K90_V2


title: G761D_1U56_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G761D_1U56_V1


title: mouse_NC_3

value: PMAs

value: macrophage

value: Negetive control


title: G760A_9M26_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G760A_9M26_V2


title: G759K_1D89_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G759K_1D89_V1


title: Paternal2_DEN


title: G759K_2U76_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G759K_2U76_V2


title: G757D_5U94_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G757D_5U94_V1


title: G760A_8L78_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G760A_8L78_V1


title: G757D_2C93_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G757D_2C93_V2


title: G758F_5J63_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G758F_5J63_V1


title: G758F_4L55_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G758F_4L55_V2


title: G756B_5G90_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G756B_5G90_V1


title: G756B_2Q31_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G756B_2Q31_V2


title: P041_9H27_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
P041_9H27_V1


title: G754J_6H62_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G754J_6H62_V1

value: Wollof


title: G755H_8G29_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G755H_8G29_V2


title: G754J_4D36_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G754J_4D36_V2


title: P040_9H94_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
P040_9H94_V2


title: G753G_8H20_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G753G_8H20_V1


title: G752A_6T71_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G752A_6T71_V2


title: G751C_5L24_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G751C_5L24_V2


title: G751C_9D51_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G751C_9D51_V1


title: G750E_9B64_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G750E_9B64_V2


title: G752A_7P70_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G752A_7P70_V1


title: G750E_1M07_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G750E_1M07_V1


title: G749H_4M44_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G749H_4M44_V1


title: G748B_5H51_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G748B_5H51_V2


title: G748B_2J51_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G748B_2J51_V1


title: G749H_8U65_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G749H_8U65_V2


title: G746C_7P56_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G746C_7P56_V1


title: G742E_1M84_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G742E_1M84_V2


title: G746C_1U49_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G746C_1U49_V2


title: G744D_5B98_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G744D_5B98_V1


title: G743F_3B31_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G743F_3B31_V1


title: G747A_2T10_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G747A_2T10_V2


title: G742E_8C18_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G742E_8C18_V1


title: G744D_5J25_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G744D_5J25_V2


title: G741K_6G70_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G741K_6G70_V1


title: G755H_8P00_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G755H_8P00_V1


title: G740J_9L60_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G740J_9L60_V1


title: G739A_4S28_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G739A_4S28_V2


title: G738K_1K73_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G738K_1K73_V2


title: G740J_4L50_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G740J_4L50_V2


title: G737H_6M04_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G737H_6M04_V2


title: G738K_3D80_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G738K_3D80_V1


title: G753G_7L77_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G753G_7L77_V2


title: G734E_8C16_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G734E_8C16_V1


title: G735D_2P55_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G735D_2P55_V1


title: G734E_7U44_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G734E_7U44_V2


title: G736G_2M00_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G736G_2M00_V2


title: G745G_5F07_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G745G_5F07_V2


title: G747A_6R89_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G747A_6R89_V1


title: G732J_5A87_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G732J_5A87_V2


title: G733B_6U56_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G733B_6U56_V1


title: G733B_1M96_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G733B_1M96_V2


title: G731F_2S69_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G731F_2S69_V2


title: G736G_2G73_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G736G_2G73_V1


title: G731F_6B58_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G731F_6B58_V1


title: G732J_4A74_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G732J_4A74_V1


title: G741K_5M78_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G741K_5M78_V2


title: G728D_8S21_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G728D_8S21_V2


title: G729E_8C71_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G729E_8C71_V1


title: G727B_8U11_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G727B_8U11_V1


title: G729E_3H53_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G729E_3H53_V2


title: G726A_7D26_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G726A_7D26_V2


title: G727B_7A35_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G727B_7A35_V2


title: G726A_1F08_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G726A_1F08_V1


title: G724H_7J31_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G724H_7J31_V2


title: G724H_2S11_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G724H_2S11_V1


title: G725C_6C45_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G725C_6C45_V2


title: G725C_7B42_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G725C_7B42_V1


title: G737H_1D87_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G737H_1D87_V1


title: G723K_4L48_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G723K_4L48_V1


title: G735D_8J20_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 1
G735D_8J20_V2


title: G723K_2S59_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G723K_2S59_V2


title: G722G_1S88_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G722G_1S88_V2


title: G722G_2L45_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G722G_2L45_V1


title: G721J_4K65_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G721J_4K65_V1


title: G721J_1S27_V2_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G721J_1S27_V2


title: G728D_9H62_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 7
G728D_9H62_V1


title: G730C_3F20_V1_Epigenetics

description:
Vaccination: Delayed - Visit 2 collected at day 3
G730C_3F20_V1


title: 11-02-402_MPL_Epigenetics

hyb_protocol: PBMCs from each participant were treated with either PBS, 3M-052, BCG or MPL. PBMC samples were normalised to ~250ng DNA in 45uL and bisulfite converted using Zymo EZ-96 DNA Methylation Kit. Used Illumina Human Methylation EPIC BeadChip following the Infinium Human Methylation EPIC v2.0 array

data_processing: Raw .idat files were read into an R statistical environment using the minfi package. Using the minfi package in R, Sample QC was performed, and failed samples were removed from analysis.  Probe level QC was performed, and poorly performing probes and known blacklist probes were removed.

extract_protocol: Extraction method used the Chemagic low-volume blood kit, where  0.65 - 1.5 ug of DNA was extracted from PBMC and sent to AGRF  Genotyping Service for bisulphite treatment and hybridization to array.

value: White

value: Not Hispanic/Latino

tag: cohort

value: NIP

value: HVR

value: PBMC


title: 11-02-402_BCG_Epigenetics

value: Female

value: Blood


title: 14-02-606_BCG_Epigenetics

value: IP

value: NVR


title: 10-02-325_MPL_Epigenetics

value: Male

value: LVR


title: 13-02-541_BCG_Epigenetics


title: 15-02-610_BCG_Epigenetics


title: 13-02-541_MPL_Epigenetics


title: 13-02-492_PBS_Epigenetics


title: 10-02-325_PBS_Epigenetics


title: 14-02-606_PBS_Epigenetics


title: 13-02-541_PBS_Epigenetics


title: 13-02-528_MPL_Epigenetics


title: 13-02-541_3M-052_Epigenetics


title: 15-02-610_3M-052_Epigenetics


title: 10-02-325_BCG_Epigenetics


title: 14-02-606_MPL_Epigenetics


title: 12-02-438_MPL_Epigenetics


title: 13-02-492_MPL_Epigenetics


title: 12-02-438_BCG_Epigenetics


title: 13-02-492_BCG_Epigenetics


title: 15-02-610_PBS_Epigenetics


title: 15-02-610_MPL_Epigenetics


title: 11-02-402_3M-052_Epigenetics


title: 12-02-438_PBS_Epigenetics


title: 14-02-606_3M-052_Epigenetics


title: 13-02-528_3M-052_Epigenetics


title: 13-02-492_3M-052_Epigenetics


title: 10-02-325_3M-052_Epigenetics


title: 12-02-438_3M-052_Epigenetics


title: 11-02-402_PBS_Epigenetics


title: 12-03-132_BCG_Epigenetics

value: vLVR


title: 13-02-528_PBS_Epigenetics


title: 12-03-132_PBS_Epigenetics


title: 11-02-404_BCG_Epigenetics


title: 11-02-404_MPL_Epigenetics


title: 13-02-538_BCG_Epigenetics


title: 13-02-538_3M-052_Epigenetics


title: 13-02-535_MPL_Epigenetics

value: Other


title: 13-02-535_BCG_Epigenetics


title: 13-02-535_3M-052_Epigenetics


title: 11-02-404_3M-052_Epigenetics


title: 10-02-303_PBS_Epigenetics


title: 11-02-404_PBS_Epigenetics


title: 10-02-303_MPL_Epigenetics


title: 09-02-134_3M-052_Epigenetics


title: 13-02-538_PBS_Epigenetics


title: 13-02-545_MPL_Epigenetics


title: 10-02-303_3M-052_Epigenetics


title: 09-02-134_BCG_Epigenetics


title: 13-02-528_BCG_Epigenetics


title: 12-03-132_MPL_Epigenetics


title: 10-02-303_BCG_Epigenetics


title: 13-02-545_3M-052_Epigenetics


title: 12-03-132_3M-052_Epigenetics


title: 13-02-535_PBS_Epigenetics


title: 13-02-545_BCG_Epigenetics


title: 09-02-134_MPL_Epigenetics


title: 13-02-538_MPL_Epigenetics


title: 15-02-614_MPL_Epigenetics


title: 15-02-614_3M-052_Epigenetics


title: 13-02-545_PBS_Epigenetics


title: 09-02-134_PBS_Epigenetics


title: 15-02-614_BCG_Epigenetics


title: 15-02-614_PBS_Epigenetics


title: 13-02-499_BCG_Epigenetics


title: 10-02-318_BCG_Epigenetics

value: African American


title: 13-02-499_3M-052_Epigenetics


title: 10-02-318_3M-052_Epigenetics


title: 14-02-591_MPL_Epigenetics


title: 14-02-593_BCG_Epigenetics


title: 14-02-591_3M-052_Epigenetics


title: 13-02-549_MPL_Epigenetics


title: 13-02-549_3M-052_Epigenetics


title: 14-02-591_BCG_Epigenetics


title: 13-02-549_BCG_Epigenetics


title: 13-02-549_PBS_Epigenetics


title: 13-02-499_MPL_Epigenetics


title: 10-02-318_PBS_Epigenetics


title: 15-02-612_MPL_Epigenetics


title: 13-02-499_PBS_Epigenetics


title: 14-02-593_MPL_Epigenetics


title: 13-02-518_3M-052_Epigenetics


title: 15-02-612_PBS_Epigenetics


title: 13-02-518_MPL_Epigenetics


title: 11-02-400_MPL_Epigenetics


title: 11-02-400_BCG_Epigenetics


title: 14-02-593_3M-052_Epigenetics


title: 14-02-591_PBS_Epigenetics


title: 14-02-593_PBS_Epigenetics


title: 13-02-530_3M-052_Epigenetics


title: 15-02-612_3M-052_Epigenetics


title: 11-02-400_PBS_Epigenetics


title: 10-02-318_MPL_Epigenetics


title: 13-02-530_PBS_Epigenetics


title: 13-02-518_PBS_Epigenetics


title: 13-02-537_3M-052_Epigenetics


title: G624K_9L94_V1_Epigenetics

value: African

value: Mandinka

value: Whole blood

value: HBV + BCG D3


title: 13-02-537_MPL_Epigenetics

value: White

value: Not Hispanic/Latino


title: 12-02-435_3M-052_Epigenetics


title: 12-02-435_PBS_Epigenetics


title: 13-02-530_MPL_Epigenetics


title: 13-02-537_BCG_Epigenetics

value: NIP

value: HVR


title: G624K_8D06_V2_Epigenetics

value: Female


title: 13-02-530_BCG_Epigenetics

value: Blood

value: PBMC


title: G622F_4D32_V2_Epigenetics

value: Fula

value: HBV + BCG D1


title: G622F_5L13_V1_Epigenetics


title: G621H_6U45_V2_Epigenetics

value: Male

value: Jola

value: HBV D1


title: 11-02-400_3M-052_Epigenetics

value: IP

value: LVR


title: G620B_5F25_V2_Epigenetics

value: African

value: DELAYED D7


title: G621H_3K50_V1_Epigenetics

value: Whole blood


title: G619J_5C10_V2_Epigenetics

value: Mandinka

value: BCG D7


title: 12-02-435_MPL_Epigenetics

value: White

value: Not Hispanic/Latino

value: vLVR


title: G618H_4U47_V2_Epigenetics

value: Female

value: Blood

value: HBV + BCG D7


title: G623A_9K02_V2_Epigenetics


title: G618H_9G85_V1_Epigenetics


title: 13-02-518_BCG_Epigenetics

value: NVR

value: PBMC


title: G619J_8A82_V1_Epigenetics

value: Male


title: 13-02-550_MPL_Epigenetics

value: NIP

value: HVR


title: 12-02-435_BCG_Epigenetics

value: IP


title: G617K_5J53_V2_Epigenetics

value: African

value: Serahule

value: HBV + BCG D3


title: G620B_3C98_V1_Epigenetics

value: Fula

value: Whole blood

value: DELAYED D7


title: G617K_3K39_V1_Epigenetics


title: G613D_5K36_V2_Epigenetics

value: Mandinka

value: HBV D7


title: 09-02-158_3M-052_Epigenetics

value: White

value: Not Hispanic/Latino

value: vLVR


title: 13-02-550_PBS_Epigenetics

value: Blood


title: G616F_3Q25_V2_Epigenetics


title: G616F_7R52_V1_Epigenetics


title: G610G_8K58_V2_Epigenetics

value: Female

value: BCG D3


title: G615E_2T13_V1_Epigenetics

value: Wollof

value: BCG D1


title: G614A_7G80_V2_Epigenetics


title: G614A_9L24_V1_Epigenetics


title: G612C_3P96_V2_Epigenetics

value: Male


title: G623A_2K76_V1_Epigenetics

value: African

value: Jola

value: HBV D1


title: G611B_8G85_V2_Epigenetics

value: HBV + BCG D1


title: G611B_9T57_V1_Epigenetics

value: Whole blood


title: G609A_5J10_V2_Epigenetics

value: HBV D3


title: G612C_9R59_V1_Epigenetics

value: Mandinka


title: G610G_1S60_V1_Epigenetics

value: Fula


title: G613D_1C11_V1_Epigenetics

value: HBV D7


title: 13-02-537_PBS_Epigenetics

value: White

value: Not Hispanic/Latino

value: NIP

value: HVR

value: PBMC


title: G608K_9D42_V1_Epigenetics

value: Female

value: Blood

value: BCG D7


title: 13-02-533_BCG_Epigenetics

value: NVR


title: G608K_4H09_V2_Epigenetics

value: African


title: G607H_2D93_V1_Epigenetics

value: Male

value: HBV + BCG D7


title: 13-02-550_3M-052_Epigenetics


title: G606G_1A89_V2_Epigenetics

value: Jola

value: Whole blood

value: DELAYED D1


title: G605D_5H22_V2_Epigenetics

value: Mandinka

value: BCG D3


title: 13-02-533_MPL_Epigenetics

value: White


title: G605D_2B54_V1_Epigenetics


title: G606G_2H99_V1_Epigenetics


title: G604E_4A37_V1_Epigenetics

value: Others


title: G604E_3Q24_V2_Epigenetics


title: 13-02-533_PBS_Epigenetics

value: Not Hispanic/Latino

value: NIP


title: G287B_5P64_V2_Epigenetics

value: HBV + BCG D3


title: G601F_3M03_V1_Epigenetics

value: DELAYED D3


title: G286A_9S98_V1_Epigenetics

value: Blood

value: DELAYED D7


title: 13-02-533_3M-052_Epigenetics

value: Female

value: NVR

value: PBMC


title: G286A_5G10_V2_Epigenetics

value: Male

value: African


title: G708J_3B76_V2_Epigenetics

value: Jola

value: Whole blood

value: HBV D3


title: G708J_6B61_V1_Epigenetics


title: 09-02-158_BCG_Epigenetics

value: IP

value: vLVR


title: 09-02-158_PBS_Epigenetics

value: White


title: 15-02-612_BCG_Epigenetics

value: Other

value: Not Hispanic/Latino

value: HVR


title: G707F_8L56_V2_Epigenetics

value: Mandinka

value: HBV + BCG D3


title: 13-02-550_BCG_Epigenetics

value: NIP

value: Blood


title: 09-02-158_MPL_Epigenetics


title: G287B_4T78_V1_Epigenetics

value: Female


title: G706K_9M31_V2_Epigenetics

value: DELAYED D7


title: G705A_6S45_2_V1_Epigenetics

value: HBV D1


title: G705A_6S45_1_V1_Epigenetics

value: African


title: G704C_7M43_V2_Epigenetics


title: G703E_7T77_2_V1_Epigenetics

value: Male


title: G702H_9Q72_V2_Epigenetics

value: Fula

value: Whole blood

value: HBV + BCG D1


title: G703E_7T77_1_V1_Epigenetics

value: HBV D3


title: G701G_6U29_V2_Epigenetics


title: G704C_6R20_V1_Epigenetics


title: G701G_9G80_V1_Epigenetics


title: G700D_1T13_V1_Epigenetics

value: HBV D7


title: G699B_9D64_1_V1_Epigenetics

value: Others

value: DELAYED D3


title: G702H_8K71_V1_Epigenetics


title: G699B_7F49_1_V2_Epigenetics


title: G700D_9D33_V2_Epigenetics


title: G699B_9D64_2_V1_Epigenetics


title: G707F_7H98_V1_Epigenetics


title: G698J_8F11_V1_Epigenetics


title: G697F_2P71_V2_Epigenetics

value: Wollof

value: HBV + BCG D7


title: G696K_3U66_1_V1_Epigenetics

value: Serahule

value: BCG D1


title: G615E_2J16_V2_Epigenetics

value: Blood


title: G699B_7F49_2_V2_Epigenetics


title: G695A_9D72_V2_Epigenetics

value: Mandinka


title: G695A_1H95_V1_Epigenetics


title: G706K_1M50_V1_Epigenetics

value: DELAYED D7


title: G696K_3U66_2_V1_Epigenetics


title: G601F_8B82_V2_Epigenetics


title: G694C_1S22_V2_Epigenetics


title: G694C_3R83_V1_Epigenetics


title: G693E_3J29_V1_Epigenetics

value: Female

value: Jola


title: G693E_3B85_V2_Epigenetics

value: African


title: G692H_1L88_V2_Epigenetics

value: Male

value: BCG D7


title: G692H_7U39_V1_Epigenetics

value: Whole blood


title: G691G_6U79_V2_Epigenetics


title: G690D_9M71_V2_Epigenetics

value: Fula


title: G690D_2A89_V1_Epigenetics


title: G609A_3R27_V1_Epigenetics

value: HBV D3


title: G689C_8P38_V2_Epigenetics

value: DELAYED D1


title: G688E_5U39_V2_Epigenetics


title: G687G_7G50_2_V2_Epigenetics

value: HBV + BCG D1


title: G687G_7G50_1_V2_Epigenetics


title: G687G_6J41_V1_Epigenetics


title: G689C_5M61_V1_Epigenetics


title: G685K_3L02_V2_Epigenetics

value: Wollof

value: BCG D3


title: G686J_4F92_V1_Epigenetics


title: G685K_2D37_V1_Epigenetics


title: G686J_1Q60_V2_Epigenetics


title: G683H_6J05_V2_Epigenetics


title: G682B_7B85_V2_Epigenetics


title: G684F_4C47_V2_Epigenetics

value: Others

value: HBV + BCG D7


title: G684F_7Q39_V1_Epigenetics

value: Blood


title: G683H_7S21_V1_Epigenetics

value: Mandinka


title: G681D_5T69_V2_Epigenetics

value: DELAYED D3


title: G680A_6P28_V2_Epigenetics

value: Female

value: DELAYED D7


title: G681D_9C34_V1_Epigenetics

value: African


title: G680A_9T68_V1_Epigenetics


title: G682B_3G64_V1_Epigenetics

value: Male


title: G679K_6D90_V2_Epigenetics

value: Jola

value: BCG D1


title: G691G_5K34_V1_Epigenetics

value: Whole blood

value: BCG D7


title: G678F_2R19_V2_Epigenetics

value: HBV + BCG D3


title: G679K_6K98_V1_Epigenetics


title: G678F_1U68_V1_Epigenetics


title: G677D_2G65_V2_Epigenetics


title: G677D_5P03_V1_Epigenetics


title: G676B_6M83_V2_Epigenetics


title: G676B_1L31_V1_Epigenetics


title: G607H_1F75_V2_Epigenetics


title: G675H_3F04_V1_Epigenetics

value: Fula


title: G675H_7T65_V2_Epigenetics


title: G674J_3T51_V2_Epigenetics

value: HBV D3


title: G671C_7P57_2_V2_Epigenetics

value: BCG D3


title: G669H_7P69_V1_Epigenetics


title: G670E_3J27_V1_Epigenetics

value: Wollof


title: G671C_7P57_1_V2_Epigenetics


title: G667A_4J86_V2_Epigenetics

value: HBV D1


title: G666C_6F21_V2_Epigenetics

value: Serahule

value: Blood

value: HBV D7


title: G671C_7M27_V1_Epigenetics

value: Female

value: Mandinka


title: G674J_7Q59_V1_Epigenetics

value: African

value: Others


title: G669H_2G86_V2_Epigenetics


title: G670E_6A42_V2_Epigenetics

value: DELAYED D3


title: G673G_4R90_V2_Epigenetics


title: G666C_3Q12_V1_Epigenetics


title: G664D_7F94_V1_Epigenetics


title: G663F_6B42_V2_Epigenetics

value: Male


title: G668B_6H64_2_V1_Epigenetics

value: Whole blood


title: G672A_1L23_V2_Epigenetics


title: G668B_6H64_1_V1_Epigenetics


title: G665G_6H04_V2_Epigenetics


title: G667A_1Q14_V1_Epigenetics


title: G664D_2Q26_V2_Epigenetics


title: G662E_5C13_V1_Epigenetics

value: HBV + BCG D1


title: G663F_2D48_V1_Epigenetics


title: G661K_2H53_V2_Epigenetics


title: G661K_1P16_V1_Epigenetics


title: G660J_8H23_V2_Epigenetics


title: G655F_6H20_V2_Epigenetics


title: G653C_6B89_V2_Epigenetics

value: HBV + BCG D3


title: G651A_6Q42_V1_Epigenetics


title: G652K_7D33_V2_Epigenetics


title: G654B_5B43_V2_Epigenetics

value: DELAYED D1


title: G659D_2F81_V2_Epigenetics

value: Jola


title: G655F_4U45_V1_Epigenetics

value: Fula


title: G662E_3B87_V2_Epigenetics


title: G657J_8A95_V2_Epigenetics


title: G658G_5K01_V2_Epigenetics

value: BCG D7


title: G656E_5R31_V2_Epigenetics

value: HBV D1


title: G660J_8K08_V1_Epigenetics

value: BCG D3


title: G650H_7S87_V1_Epigenetics

value: Serahule

value: Blood

value: HBV D3


title: G651A_6H39_V2_Epigenetics

value: Female

value: HBV D7


title: G653C_5G32_V1_Epigenetics

value: African

value: Mandinka


title: G673G_1L85_V1_Epigenetics


title: G654B_6B46_V1_Epigenetics


title: G656E_5H06_V1_Epigenetics

value: Male


title: G652K_6U53_V1_Epigenetics

value: Others

value: Whole blood


title: G659D_9A60_V1_Epigenetics


title: G649E_1G85_V2_Epigenetics

value: DELAYED D7


title: G648D_8G15_V2_Epigenetics


title: G658G_5U47_V1_Epigenetics


title: G649E_5R76_V1_Epigenetics


title: G650H_9U19_V2_Epigenetics


title: G647B_2C78_V2_Epigenetics

value: HBV + BCG D7


title: G648D_9F78_V1_Epigenetics


title: G647B_8Q31_V1_Epigenetics


title: G657J_7Q99_V1_Epigenetics

value: DELAYED D1


title: G646A_9L56_V1_Epigenetics


title: G644H_5F16_V2_Epigenetics

value: Jola


title: G644H_6L32_V1_Epigenetics


title: G643K_7B41_V1_Epigenetics


title: G641J_2B41_V1_Epigenetics


title: G641J_7J21_V2_Epigenetics


title: G645C_9A42_V2_Epigenetics


title: G642G_4G53_V1_Epigenetics

value: Fula


title: G636H_7Q21_V2_Epigenetics

value: Wollof


title: G646A_1U87_V2_Epigenetics

value: BCG D7


title: G637C_2H45_V2_Epigenetics

value: BCG D1


title: G635B_8D83_V1_Epigenetics

value: Blood


title: G637C_3D39_V1_Epigenetics


title: G638A_7J70_V1_Epigenetics


title: G642G_1Q85_V2_Epigenetics


title: G639F_8S79_V1_Epigenetics


title: G638A_2Q57_V2_Epigenetics


title: G640F_3K81_V2_Epigenetics

value: HBV D3


title: G634G_3T91_V2_Epigenetics


title: G635B_1M91_V2_Epigenetics

value: Female


title: G634G_7M95_V1_Epigenetics


title: G633J_6U14_V1_Epigenetics

value: DELAYED D3


title: G645C_5J98_V1_Epigenetics

value: African


title: G643K_2B56_V2_Epigenetics


title: G632D_1S96_V2_Epigenetics

value: Mandinka


title: G639F_4A88_V2_Epigenetics


title: G640F_6K32_V1_Epigenetics

value: Male


title: G632D_4J38_V1_Epigenetics


title: G630K_7T60_V2_Epigenetics

value: Others


title: G631E_8F59_V2_Epigenetics

value: Whole blood


title: G631E_5J56_V1_Epigenetics


title: G630K_9Q13_V1_Epigenetics


title: G627E_5F95_V2_Epigenetics

value: DELAYED D7


title: G628C_8L57_V1_Epigenetics

value: HBV + BCG D1


title: G627E_5K09_V1_Epigenetics


title: G626D_6K22_V2_Epigenetics

value: HBV D1


title: G626D_4K37_V1_Epigenetics


title: G633J_9R28_V2_Epigenetics


title: G629G_7K73_V2_Epigenetics


title: G625J_2T33_V2_Epigenetics

value: HBV + BCG D7


title: G599C_3B26_V1_Epigenetics

value: Serahule

value: BCG D3


title: G600C_1L06_V1_Epigenetics

value: Jola


title: G598E_8S89_V1_Epigenetics

value: HBV + BCG D3


title: G598E_1M92_V2_Epigenetics

value: Blood


title: G597G_9H51_V1_Epigenetics

value: BCG D1


title: G596J_4R24_V1_Epigenetics

value: Female

value: HBV D7


title: G595K_3B24_V1_Epigenetics

value: African

value: Wollof

value: DELAYED D1


title: G595K_6G86_V2_Epigenetics

value: Male


title: G628C_5B05_V2_Epigenetics

value: Fula

value: Whole blood


title: G629G_1L28_V1_Epigenetics

value: HBV + BCG D1


title: G594F_1C89_V1_Epigenetics


title: G592B_2A09_V2_Epigenetics

value: Mandinka


title: G600C_3D01_V2_Epigenetics

value: DELAYED D7


title: G593H_3F78_V1_Epigenetics


title: G625J_3T92_V1_Epigenetics

value: Others

value: HBV + BCG D7


title: G591D_2B39_V1_Epigenetics

value: DELAYED D3


title: G589A_5F47_V2_Epigenetics

value: HBV D3


title: G599C_6M86_V2_Epigenetics

value: Serahule

value: Blood

value: BCG D3


title: G590A_5A27_V2_Epigenetics


title: G597G_6B36_V2_Epigenetics

value: BCG D1


title: G665G_5J90_V1_Epigenetics

value: African

value: HBV + BCG D3


title: G587H_1C82_V1_Epigenetics

value: HBV D1


title: G586G_3R12_V1_Epigenetics

value: Female


title: G586G_4C16_V2_Epigenetics


title: G585D_3C10_V2_Epigenetics


title: G593H_2U59_V2_Epigenetics

value: Male


title: G585D_7U10_V1_Epigenetics

value: Whole blood


title: G584E_1S20_V2_Epigenetics

value: Wollof

value: BCG D7


title: G590A_6C18_V1_Epigenetics

value: HBV + BCG D1


title: G588K_7A14_V2_Epigenetics

value: Mandinka

value: DELAYED D1


title: G587H_8F36_V2_Epigenetics


title: G591D_3U99_V2_Epigenetics

value: DELAYED D3


title: G583B_7Q94_V1_Epigenetics

value: DELAYED D7


title: G584E_1Q09_V1_Epigenetics


title: G583B_7A12_V2_Epigenetics


title: G588K_4L29_V1_Epigenetics


title: G582J_9S67_V1_Epigenetics


title: G580C_1D49_V1_Epigenetics

value: Jola

value: HBV D3


title: G589A_4S94_V1_Epigenetics

value: Blood


title: G581F_6M03_V1_Epigenetics


title: G575G_8C50_V2_Epigenetics

value: BCG D1


title: G572E_9Q24_V2_Epigenetics

value: African


title: G578B_9M45_V2_Epigenetics

value: HBV D7


title: G574D_3Q84_V1_Epigenetics


title: G575G_4Q36_V1_Epigenetics


title: G577A_2Q94_V1_Epigenetics


title: G574D_6G93_V2_Epigenetics


title: G578B_6T21_V1_Epigenetics


title: G579H_1K26_V1_Epigenetics

value: Serahule

value: HBV D1


title: G576C_9B19_V1_Epigenetics

value: Male

value: HBV + BCG D7


title: G579H_8R16_V2_Epigenetics

value: Whole blood


title: G576C_3L61_V2_Epigenetics


title: G572E_4T63_V1_Epigenetics

value: Female


title: G571K_1L37_V1_Epigenetics

value: Wollof


title: G581F_7T52_V2_Epigenetics

value: Mandinka


title: G571K_9T49_V2_Epigenetics


title: G570J_2J69_V2_Epigenetics


title: G582J_9R47_V2_Epigenetics

value: BCG D3


title: G570J_5G44_V1_Epigenetics


title: G569E_3M46_V1_Epigenetics

value: DELAYED D1


title: G580C_7P03_V2_Epigenetics


title: G573F_8T51_V1_Epigenetics


title: G573F_2D90_V2_Epigenetics


title: G568D_2K66_V1_Epigenetics

value: DELAYED D3


title: G569E_9S63_V2_Epigenetics


title: G567B_9J57_V2_Epigenetics


title: G566A_8U40_V1_Epigenetics

value: HBV + BCG D1


title: G568D_6D74_V2_Epigenetics

value: Jola


title: G566A_5F29_V2_Epigenetics

value: Blood


title: G567B_2B97_V1_Epigenetics


title: G563K_1S84_V2_Epigenetics

value: HBV + BCG D3


title: G565C_7S93_V1_Epigenetics

value: African


title: G563K_8D58_V1_Epigenetics


title: G564H_9K46_2_V1_Epigenetics

value: BCG D1


title: G565C_5A68_V2_Epigenetics


title: G562G_3Q28_V2_Epigenetics

value: DELAYED D7


title: G562G_8S77_V1_Epigenetics


title: G561J_4U99_V1_Epigenetics

value: HBV D7


title: G560F_9Q39_V2_Epigenetics

value: Others

value: HBV D3


title: G561J_1K59_V2_Epigenetics

value: Male

value: Whole blood


title: G560F_3L23_V1_Epigenetics

value: Female


title: G577A_7F22_V2_Epigenetics

value: BCG D7


title: G559G_5L59_2_V2_Epigenetics


title: G559G_5L59_1_V2_Epigenetics


title: G558C_7R92_V1_Epigenetics

value: Mandinka


title: G557E_2M54_V2_Epigenetics


title: G558C_1K12_V2_Epigenetics


title: G557E_6J53_V1_Epigenetics


title: G564H_9K46_1_V1_Epigenetics


title: G556D_7T64_V1_Epigenetics

value: Wollof


title: G556D_4U37_V2_Epigenetics


title: G554K_8S36_V2_Epigenetics

value: DELAYED D1


title: G553A_1A61_V1_Epigenetics


title: G555J_9B83_V1_Epigenetics


title: G555J_1M67_V2_Epigenetics


title: G552F_9J46_V2_Epigenetics

value: HBV D1


title: G552F_6H22_V1_Epigenetics


title: G551H_2P69_V2_Epigenetics

value: Jola


title: G553A_6S92_V2_Epigenetics

value: Blood


title: G551H_1J30_V1_Epigenetics


title: G550B_5Q06_V2_Epigenetics

value: DELAYED D3


title: G554K_9C67_V1_Epigenetics

value: African


title: G549J_7Q40_V1_Epigenetics

value: Fula


title: G549J_7D27_V2_Epigenetics


title: G550B_1G75_V1_Epigenetics


title: G547K_5B70_V1_Epigenetics


title: G546F_5S23_V2_Epigenetics


title: G547K_1A73_V2_Epigenetics


title: G548H_5A74_V1_Epigenetics


title: G548H_5L71_V2_Epigenetics


title: G546F_2A68_V1_Epigenetics


title: G545E_8M17_V1_Epigenetics


title: G545E_6B00_V2_Epigenetics


title: G544A_9K10_V2_Epigenetics

value: DELAYED D7


title: G544A_8F50_V1_Epigenetics


title: G636H_1L39_V1_Epigenetics


title: G543D_6J00_V1_Epigenetics

value: HBV + BCG D3


title: G543D_6G07_V2_Epigenetics


title: G540G_8D56_V2_Epigenetics


title: G541B_7F58_V2_Epigenetics

value: Others

value: HBV D7


title: G542C_4F59_V1_Epigenetics

value: HBV + BCG D1


title: G540G_5S70_V1_Epigenetics

value: Whole blood


title: G539D_8R57_V2_Epigenetics

value: Female

value: HBV + BCG D7


title: G541B_6Q73_V1_Epigenetics


title: G538G_1U32_V1_Epigenetics

value: Mandinka


title: G538G_2H74_V2_Epigenetics


title: G542C_5S57_V2_Epigenetics


title: G536E_5B17_V1_Epigenetics

value: Male

value: BCG D7


title: G537J_7H78_V1_Epigenetics


title: G534B_2H46_V2_Epigenetics

value: BCG D1


title: G537J_1A74_V2_Epigenetics


title: G536E_7A20_V2_Epigenetics


title: G535F_7F53_V1_Epigenetics

value: BCG D3


title: G534B_4S04_V1_Epigenetics

value: Blood


title: G535F_8R96_V2_Epigenetics


title: G533C_3K28_V1_Epigenetics


title: G533C_5R64_V2_Epigenetics


title: G532K_3C03_V1_Epigenetics

value: Jola

value: HBV D3


title: G532K_8C53_V2_Epigenetics

value: African


title: G531A_5D84_V1_Epigenetics


title: G531A_4G06_V2_Epigenetics


title: G529F_1H27_V1_Epigenetics


title: G530H_8K01_V2_Epigenetics


title: G539D_7L51_V1_Epigenetics


title: G526H_8F15_V2_Epigenetics


title: G527C_4P92_V1_Epigenetics

value: Wollof


title: G528A_9C38_V2_Epigenetics


title: G528A_7U71_V1_Epigenetics


title: G525B_1S19_V2_Epigenetics


title: G526H_2F80_V1_Epigenetics


title: G529F_7D82_V2_Epigenetics


title: G521E_3C85_V2_Epigenetics

value: HBV + BCG D3


title: G530H_4T05_V1_Epigenetics


title: G521E_7S56_V1_Epigenetics


title: G523J_6P85_V2_Epigenetics


title: G525B_2T50_V1_Epigenetics


title: G524G_2L81_V2_Epigenetics

value: DELAYED D3


title: G520K_2L30_V1_Epigenetics

value: Serahule

value: HBV D7


title: G523J_8H62_V1_Epigenetics

value: Whole blood

value: HBV + BCG D1


title: G592B_1B43_V1_Epigenetics


title: G519B_1A85_V1_Epigenetics

value: Fula


title: G518J_2J17_V2_Epigenetics

value: Mandinka

value: DELAYED D7


title: G524G_7B33_V1_Epigenetics

value: Female


title: G518J_7M17_V1_Epigenetics

value: Male


title: G517F_7A15_V2_Epigenetics

value: BCG D3


title: G519B_7B45_V2_Epigenetics

value: Blood


title: G596J_9F34_V2_Epigenetics


title: G517F_6F90_V1_Epigenetics


title: G516K_6H87_V1_Epigenetics

value: Jola

value: HBV D1


title: G594F_2B69_V2_Epigenetics

value: African

value: HBV + BCG D7


title: G516K_6K10_V2_Epigenetics


title: G515A_8C12_V2_Epigenetics

value: DELAYED D1


title: G527C_5A81_V2_Epigenetics

value: Wollof

value: BCG D7


title: G520K_7C08_V2_Epigenetics

value: Serahule

value: HBV D7


title: G514C_2A30_V1_Epigenetics

value: Whole blood


title: G513E_6R36_V1_Epigenetics


title: G514C_4Q06_V2_Epigenetics


title: G513E_1K80_V2_Epigenetics


title: G510D_6B87_V1_Epigenetics

value: HBV + BCG D3


title: G512H_6H54_V2_Epigenetics

value: HBV D3


title: G515A_6J71_V1_Epigenetics


title: G511G_4C72_V2_Epigenetics

value: Others


title: G511G_1R72_V1_Epigenetics

value: Female


title: G509K_4R31_1_V1_Epigenetics


title: G510D_3P71_V2_Epigenetics

value: Male

value: Mandinka


title: G507D_9Q61_V1_Epigenetics

value: Blood


title: G507D_7R68_V2_Epigenetics


title: G505H_9A80_V1_Epigenetics

value: DELAYED D3


title: G509K_4R31_2_V1_Epigenetics


title: G505H_9T93_V2_Epigenetics


title: G508F_9P28_V1_Epigenetics


title: G506B_3P59_V2_Epigenetics

value: HBV + BCG D1


title: G508F_1T34_V2_Epigenetics

value: African


title: G504J_3J15_V1_Epigenetics


title: G504J_2T89_V2_Epigenetics


title: G503G_9P98_V2_Epigenetics

value: BCG D1


title: G512H_9Q54_V1_Epigenetics

value: Jola


title: G506B_7L81_V1_Epigenetics


title: G502A_7A36_V2_Epigenetics

value: Wollof

value: HBV + BCG D7


title: G503G_5J96_V1_Epigenetics


title: G502A_7Q71_V1_Epigenetics


title: G501C_4H16_V1_Epigenetics


title: G500E_4L58_V1_Epigenetics


title: G500E_5B07_V2_Epigenetics


title: G497J_6G06_V2_Epigenetics


title: G498G_7D25_V2_Epigenetics

value: DELAYED D1


title: G499D_8S20_V1_Epigenetics


title: G501C_4S05_V2_Epigenetics


title: G495F_5K94_V1_Epigenetics


title: G496E_9D03_V1_Epigenetics


title: G494B_1J88_V2_Epigenetics


title: G493C_1M15_V1_Epigenetics


title: G497J_3K72_V1_Epigenetics


title: G498G_8L35_V1_Epigenetics


title: G496E_4M89_V2_Epigenetics


title: G495F_1F22_V2_Epigenetics


title: G494B_6D98_V1_Epigenetics


title: G491A_9Q90_V1_Epigenetics

value: HBV D7


title: G489F_3S50_V2_Epigenetics

value: Fula

value: Whole blood


title: G490H_5T24_V1_Epigenetics

value: DELAYED D7


title: G492K_6J70_2_V2_Epigenetics

value: HBV D3


title: G491A_8K47_V2_Epigenetics


title: G493C_1M74_V2_Epigenetics

value: HBV + BCG D3


title: G488A_2A57_V2_Epigenetics

value: Female

value: BCG D3


title: G489F_2C88_V1_Epigenetics

value: Male

value: Blood


title: G492K_6J70_1_V2_Epigenetics

value: Mandinka


title: G488A_9K53_V1_Epigenetics

value: African


title: G499D_8A77_V2_Epigenetics

value: Others


title: G490H_2Q35_V2_Epigenetics

value: Jola


title: G487C_9P23_V2_Epigenetics


title: G487C_6J13_V1_Epigenetics


title: G486H_8Q23_V1_Epigenetics

value: BCG D1


title: G486H_5H43_V2_Epigenetics


title: G485B_7K42_V2_Epigenetics

value: HBV + BCG D7


title: G484G_8K79_V2_Epigenetics

value: Wollof

value: DELAYED D1


title: G484G_2R47_V1_Epigenetics


title: G485B_9R33_V1_Epigenetics


title: G483J_2K78_V1_Epigenetics


title: G483J_7F23_V2_Epigenetics


title: G482D_1G28_2_V1_Epigenetics

value: Fula


title: G481E_4B67_V2_Epigenetics

value: Whole blood

value: HBV D1


title: G480K_6B66_V2_Epigenetics

value: BCG D7


title: G482D_1G28_1_V1_Epigenetics

value: HBV D3


title: G481E_1D60_V1_Epigenetics

value: Female


title: G476K_2M72_2_V1_Epigenetics

value: DELAYED D7


title: G478J_6L08_V2_Epigenetics

value: Male

value: HBV D7


title: G477F_3B49_V1_Epigenetics

value: Mandinka

value: Blood


title: G479B_7P48_1_V2_Epigenetics

value: African


title: G478J_2R03_V1_Epigenetics


title: G476K_2M72_1_V1_Epigenetics


title: G475A_8F05_V2_Epigenetics

value: Jola

value: DELAYED D3


title: G474C_6M33_V1_Epigenetics


title: G473E_5G17_V1_Epigenetics

value: HBV + BCG D1


title: G474C_9P79_V2_Epigenetics

value: Wollof


title: G473E_8P87_V2_Epigenetics


title: G472H_3A49_V2_Epigenetics


title: G472H_3H83_V1_Epigenetics


title: G471G_1U40_V1_Epigenetics


title: G469A_9C51_V1_Epigenetics

value: HBV + BCG D3


title: G468K_5P40_V2_Epigenetics


title: G467H_9K12_V1_Epigenetics

value: Fula


title: G467H_4M58_1_V2_Epigenetics

value: Whole blood


title: G479B_7P48_2_V2_Epigenetics

value: BCG D1


title: G479B_6D04_V1_Epigenetics


title: G466G_2H77_1_V2_Epigenetics

value: BCG D3


title: G465D_8R53_V2_Epigenetics


title: G465D_3J97_V1_Epigenetics


title: G477F_6F45_V2_Epigenetics


title: G464E_3Q78_2_V1_Epigenetics


title: G464E_3Q78_1_V1_Epigenetics


title: G463B_4H65_1_V1_Epigenetics


title: G463B_4H65_2_V1_Epigenetics


title: G467H_4M58_2_V2_Epigenetics

value: BCG D7


title: G460C_7F30_V2_Epigenetics


title: G461F_6T52_V1_Epigenetics


title: G462J_9S56_V2_Epigenetics

value: HBV D1


title: G461F_5H20_V2_Epigenetics


title: G460C_8S87_V1_Epigenetics


title: G462J_6S73_V1_Epigenetics


title: G459C_3T46_V2_Epigenetics

value: DELAYED D7


title: G475A_7L25_V1_Epigenetics

value: Female


title: G469A_4T06_V2_Epigenetics


title: G459C_2A81_V1_Epigenetics

value: Male


title: G471G_2H04_V2_Epigenetics

value: Mandinka


title: G470D_2U89_V1_Epigenetics

value: Blood

value: HBV D3


title: G458E_2R11_V2_Epigenetics

value: African


title: G458E_4L71_V1_Epigenetics


title: G457G_4T95_2_V1_Epigenetics


title: G455K_8P95_V1_Epigenetics


title: G466G_2H77_2_V2_Epigenetics


title: G455K_1P55_V2_Epigenetics


title: G454F_9F41_V1_Epigenetics

value: HBV D7


title: G453H_7P93_V1_Epigenetics


title: G453H_6S39_V2_Epigenetics


title: G454F_1M79_V2_Epigenetics


title: G451D_6F13_V2_Epigenetics

value: HBV + BCG D1


title: G451D_4P60_V1_Epigenetics


title: G452B_5G56_V2_Epigenetics


title: G449K_4K70_V2_Epigenetics

value: Wollof


title: G449K_8A44_V1_Epigenetics


title: G450A_5U53_V2_Epigenetics

value: HBV + BCG D7


title: G450A_6Q10_V1_Epigenetics


title: G448F_9C42_V2_Epigenetics


title: G447D_5G25_V1_Epigenetics


title: G445H_7B86_V1_Epigenetics

value: HBV + BCG D3


title: G446B_1G45_V2_Epigenetics

value: Whole blood


title: G445H_9T95_V2_Epigenetics


title: G457G_4T95_1_V1_Epigenetics


title: G444J_1M53_V1_Epigenetics


title: G444J_1C09_V2_Epigenetics


title: G443G_8G97_V1_Epigenetics

value: DELAYED D3


title: G442A_7L63_V2_Epigenetics

value: Others


title: G442A_3B06_V1_Epigenetics

value: BCG D7


title: G440E_4A43_1_V2_Epigenetics


title: G441C_2U33_V1_Epigenetics


title: G441C_5F13_V2_Epigenetics


title: G439J_7Q72_V1_Epigenetics

value: Jola


title: G448F_1F77_V1_Epigenetics

value: BCG D1


title: G439J_7S99_V2_Epigenetics


title: G447D_4P05_V2_Epigenetics

value: Female

value: HBV D1


title: G438H_1F73_V2_Epigenetics

value: Male


title: G437K_2M98_V2_Epigenetics

value: Fula

value: Blood


title: G436F_8H60_V2_Epigenetics

value: African

value: Mandinka

value: HBV D3


title: G436F_7U16_V1_Epigenetics


title: G435E_7P25_V2_Epigenetics

value: HBV + BCG D1


title: G434A_6J34_V2_Epigenetics

value: HBV + BCG D7


title: G446B_8D64_V1_Epigenetics

value: BCG D3


title: G434A_8R60_V1_Epigenetics

value: Whole blood


title: G433D_6C00_V2_Epigenetics


title: G443G_8K17_V2_Epigenetics

value: Wollof

value: DELAYED D3


title: G432C_3M41_V1_Epigenetics

value: DELAYED D1


title: G432C_7Q45_V2_Epigenetics


title: G452B_7S32_V1_Epigenetics


title: G431B_1S41_V2_Epigenetics

value: DELAYED D7


title: G431B_2Q04_V1_Epigenetics


title: G440E_4A43_2_V2_Epigenetics

value: Others

value: HBV + BCG D3


title: G437K_3R56_V1_Epigenetics

value: HBV D1


title: G438H_4H64_V1_Epigenetics

value: Male

value: Jola

value: BCG D7


title: G429H_5U26_V2_Epigenetics

value: African

value: Blood

value: HBV D7


title: G429H_8S25_V1_Epigenetics

value: Mandinka


title: G430G_7K85_1_V1_Epigenetics


title: G428B_6F51_V2_Epigenetics

value: Female


title: G435E_8L52_V1_Epigenetics

value: Fula

value: HBV + BCG D1


title: G427A_7J86_V1_Epigenetics

value: Whole blood


title: G426C_5G57_2_V1_Epigenetics

value: BCG D3


title: G425G_5K30_V2_Epigenetics

value: Wollof


title: G424D_2Q40_V1_Epigenetics

value: DELAYED D7


title: G425G_2J47_V1_Epigenetics


title: G433D_2J56_V1_Epigenetics


title: G423F_1U66_V2_Epigenetics

value: HBV + BCG D7


title: G422E_3M44_V2_Epigenetics

value: BCG D1


title: G422E_6H24_V1_Epigenetics


title: G421K_4Q83_V2_Epigenetics

value: Others

value: DELAYED D1


title: G430G_7K85_2_V1_Epigenetics


title: G421K_2P80_V1_Epigenetics


title: G420J_2T37_V1_Epigenetics

value: Male


title: G418D_1Q41_V1_Epigenetics

value: BCG D7


title: G419E_4K34_V1_Epigenetics


title: G419E_9J86_V2_Epigenetics


title: G418D_2H40_V2_Epigenetics

value: African


title: G417B_5Q47_V1_Epigenetics

value: Blood


title: G416A_2J97_1_V1_Epigenetics

value: DELAYED D3


title: G428B_8P65_V1_Epigenetics

value: Mandinka


title: G414H_7H35_V2_Epigenetics

value: Female

value: HBV D3


title: G415C_2Q95_V2_Epigenetics


title: G427A_8A24_V2_Epigenetics


title: G417B_4M82_V2_Epigenetics


title: G416A_2J97_2_V1_Epigenetics


title: G426C_5G57_1_V1_Epigenetics


title: G415C_2M40_V1_Epigenetics


title: G413K_3T54_V1_Epigenetics


title: G423F_2B57_V1_Epigenetics


title: G414H_3Q98_V1_Epigenetics


title: G412G_8R18_V2_Epigenetics

value: HBV D7


title: G424D_4S73_V2_Epigenetics

value: Whole blood


title: G412G_5A08_V1_Epigenetics


title: G411J_7D54_V1_Epigenetics

value: Fula

value: HBV D1


title: G411J_1H25_V2_Epigenetics


title: G410F_4L61_V2_Epigenetics


title: G410F_6F17_V1_Epigenetics


title: G420J_4G13_V2_Epigenetics


title: G409G_8J33_V1_Epigenetics

value: Jola

value: BCG D3


title: G409G_4F65_V2_Epigenetics


title: G408C_9P58_2_V2_Epigenetics


title: G408C_6A25_2_V1_Epigenetics


title: G408C_9P58_1_V2_Epigenetics


title: G408C_6A25_1_V1_Epigenetics


title: G407E_7P41_V2_Epigenetics

value: HBV + BCG D3


title: G406D_5Q61_V1_Epigenetics


title: G406D_5H31_V2_Epigenetics


title: G405J_1R58_V1_Epigenetics

value: HBV + BCG D1


title: G413K_2P85_V2_Epigenetics

value: Others


title: G407E_2P99_V1_Epigenetics


title: G404K_2S84_2_V2_Epigenetics

value: Male


title: G405J_3D88_V2_Epigenetics


title: G404K_2S84_1_V2_Epigenetics

value: BCG D7


title: G402F_8C54_2_V2_Epigenetics

value: African


title: G402F_8C54_1_V2_Epigenetics

value: Blood


title: G402F_2A62_V1_Epigenetics


title: G400B_2G55_V1_Epigenetics

value: HBV + BCG D7


title: G403A_8T41_V2_Epigenetics


title: G401H_4K05_V1_Epigenetics

value: DELAYED D7


title: G399H_6G25_V2_Epigenetics

value: Female


title: G401H_5P75_V2_Epigenetics


title: G400B_8T29_V2_Epigenetics


title: G398B_1A08_V2_Epigenetics

value: BCG D1


title: G398B_8Q55_2_V1_Epigenetics


title: G397A_2U45_V1_Epigenetics


title: G397A_3M21_V2_Epigenetics


title: G396C_5J08_V1_Epigenetics

value: Mandinka

value: DELAYED D3


title: G395G_5D04_V2_Epigenetics

value: Whole blood


title: G395G_2P86_V1_Epigenetics


title: G394D_1C54_V2_Epigenetics

value: HBV D3


title: G394D_9U67_V1_Epigenetics


title: G393F_7R27_V2_Epigenetics


title: G392E_1A29_V1_Epigenetics


title: G392E_7R26_V2_Epigenetics


title: G391K_8L72_V1_Epigenetics


title: G393F_7S94_V1_Epigenetics


title: G389D_5U28_V2_Epigenetics

value: Jola


title: G390J_3C64_V1_Epigenetics


title: G390J_9Q56_V2_Epigenetics


title: G389D_4F28_V1_Epigenetics


title: G391K_2H52_V2_Epigenetics


title: G387J_2M15_V1_Epigenetics


title: G386E_1G12_V1_Epigenetics


title: G385F_7T80_V2_Epigenetics

value: HBV D1


title: G388G_3H64_V1_Epigenetics


title: G384B_3U54_2_V1_Epigenetics

value: Wollof


title: G386E_1C16_V2_Epigenetics

value: HBV + BCG D1


title: G384B_9U38_2_V2_Epigenetics


title: G385F_3F23_V1_Epigenetics


title: G384B_9U38_1_V2_Epigenetics


title: G470D_7J50_V2_Epigenetics

value: Fula


title: G383C_4U29_V2_Epigenetics


title: G384B_3U54_1_V1_Epigenetics


title: G383C_8K97_V1_Epigenetics


title: G382K_9P51_V2_Epigenetics


title: G382K_3Q59_V1_Epigenetics


title: G381A_4B79_V1_Epigenetics


title: G381A_4M50_V2_Epigenetics


title: G378E_5Q10_V2_Epigenetics

value: DELAYED D1


title: G398B_8Q55_1_V1_Epigenetics

value: Male


title: G387J_3U85_V2_Epigenetics

value: African


title: G379C_9Q33_1_V1_Epigenetics

value: Blood


title: G380H_7L35_V2_Epigenetics

value: BCG D7


title: G378E_6F73_V1_Epigenetics


title: G376J_7B08_V1_Epigenetics

value: BCG D3


title: G377G_8B83_V1_Epigenetics

value: Female


title: G377G_5K49_V2_Epigenetics


title: G372B_5S01_V1_Epigenetics

value: DELAYED D7


title: G374F_7C68_V2_Epigenetics

value: Mandinka


title: G371D_8H82_V2_Epigenetics

value: HBV + BCG D3


title: G373H_1A03_V2_Epigenetics

value: Whole blood


title: G374F_8J91_V1_Epigenetics

value: HBV D3


title: G371D_6K56_V1_Epigenetics


title: G372B_6S35_V2_Epigenetics


title: G380H_9K98_V1_Epigenetics

value: Jola


title: G369K_1L72_V2_Epigenetics


title: G373H_5D74_V1_Epigenetics


title: G368F_7G05_V2_Epigenetics


title: G369K_1U36_V1_Epigenetics


title: G375K_6Q92_V2_Epigenetics

value: HBV D1


title: G376J_1C42_V2_Epigenetics


title: G368F_8U57_V1_Epigenetics


title: G366B_8J29_1_V1_Epigenetics


title: G366B_8J29_2_V1_Epigenetics


title: G365H_7R98_V2_Epigenetics


title: G379C_9Q33_2_V1_Epigenetics

value: HBV + BCG D7


title: G364J_1C81_V2_Epigenetics


title: G365H_6U46_V1_Epigenetics


title: G364J_1S11_V1_Epigenetics


title: G363G_6Q07_V2_Epigenetics

value: HBV D7


title: G375K_1H31_V1_Epigenetics


title: G362A_2M80_2_V2_Epigenetics

value: Fula


title: G363G_9P21_V1_Epigenetics


title: G361C_6C62_2_V2_Epigenetics

value: Others

value: DELAYED D3


title: G361C_6C62_1_V2_Epigenetics

value: Male

value: African


title: G334C_1J76_V2_Epigenetics

value: Blood

value: HBV + BCG D1


title: G336K_6B73_V1_Epigenetics

value: Female

value: Wollof


title: G335A_8F90_V2_Epigenetics

value: Serahule


title: G335A_8A16_V1_Epigenetics


title: G334C_4B73_V1_Epigenetics

value: Mandinka


title: G331G_9T29_V1_Epigenetics

value: Whole blood

value: DELAYED D1


title: G336K_5M82_V2_Epigenetics


title: G333E_7A06_V1_Epigenetics


title: G333E_4P22_V2_Epigenetics


title: G332H_2H66_V2_Epigenetics

value: BCG D1


title: G332H_9C78_V1_Epigenetics


title: G331G_4U20_V2_Epigenetics


title: G330D_6A01_V1_Epigenetics


title: G329J_5U56_V2_Epigenetics

value: HBV D1


title: G329J_2F35_V1_Epigenetics


title: G330D_2M47_V2_Epigenetics


title: G328H_9D21_V2_Epigenetics

value: Jola

value: HBV + BCG D7


title: G327K_3G39_V2_Epigenetics

value: HBV D3


title: G328H_9R21_V1_Epigenetics


title: G362A_2M80_1_V2_Epigenetics

value: Fula

value: HBV D7


title: G327K_7M97_V1_Epigenetics

value: Male


title: G326F_1F49_V2_Epigenetics

value: African

value: DELAYED D3


title: G326F_6Q91_V1_Epigenetics

value: Blood


title: G325E_8S78_V2_Epigenetics

value: HBV + BCG D1


title: G325E_4T14_V1_Epigenetics


title: G324A_9M15_2_V1_Epigenetics

value: Female


title: G324A_9M15_1_V1_Epigenetics


title: G322C_8T05_V2_Epigenetics

value: HBV + BCG D3


title: G323D_3H00_V1_Epigenetics

value: Mandinka


title: G323D_4U83_V2_Epigenetics

value: Whole blood


title: G318K_6Q21_V2_Epigenetics

value: Wollof


title: G322C_4D28_V1_Epigenetics


title: G321B_5S92_V1_Epigenetics

value: Others

value: BCG D1


title: G319A_1L35_V2_Epigenetics

value: DELAYED D7


title: G318K_1M21_V1_Epigenetics


title: G320G_4L52_V1_Epigenetics


title: G321B_9K40_V2_Epigenetics


title: G319A_4T48_V1_Epigenetics


title: G317H_5H39_V2_Epigenetics

value: HBV D1


title: G316G_9T61_V2_Epigenetics

value: DELAYED D1


title: G317H_2J28_V1_Epigenetics


title: G315D_5H81_V1_Epigenetics


title: G316G_9F96_V1_Epigenetics


title: G314E_9J20_V2_Epigenetics

value: BCG D7


title: G315D_8P86_V2_Epigenetics


title: G314E_8A36_V1_Epigenetics


title: G312J_1B44_V2_Epigenetics


title: G312J_1P53_V1_Epigenetics


title: G313B_7M55_V1_Epigenetics

value: BCG D3


title: G313B_3M95_V2_Epigenetics

value: Male


title: G311F_7Q80_V2_Epigenetics

value: African

value: HBV D3


title: G311F_8S70_V1_Epigenetics

value: Blood


title: G310C_3T45_V1_Epigenetics

value: Jola

value: HBV + BCG D7


title: G310C_7S83_V2_Epigenetics


title: G309F_6B90_V1_Epigenetics


title: G320G_2M85_V2_Epigenetics

value: Female


title: G309F_4D27_V2_Epigenetics


title: G307C_9M43_V2_Epigenetics

value: Mandinka


title: G305B_9J40_V1_Epigenetics

value: Whole blood


title: G306H_7F64_2_V1_Epigenetics

value: Serahule


title: G308A_5C24_V2_Epigenetics

value: Wollof


title: G304G_8M87_2_V1_Epigenetics

value: HBV D7


title: G302D_4C13_V2_Epigenetics


title: G304G_8M87_1_V1_Epigenetics


title: G303J_6F60_V2_Epigenetics


title: G308A_4K44_V1_Epigenetics


title: G305B_9A76_V2_Epigenetics


title: G302D_8Q30_V1_Epigenetics


title: G301E_7R66_V2_Epigenetics

value: HBV + BCG D1


title: G303J_6L70_V1_Epigenetics


title: G307C_9S28_V1_Epigenetics

value: HBV D1


title: G301E_9F37_V1_Epigenetics


title: G300K_2A64_V1_Epigenetics

value: DELAYED D7


title: G299G_1R33_V1_Epigenetics


title: G300K_1T38_V2_Epigenetics


title: G306H_7F64_1_V1_Epigenetics

value: BCG D1


title: G299G_8U88_V2_Epigenetics


title: G298C_1C69_V1_Epigenetics


title: G297E_9G83_V1_Epigenetics


title: G296D_2G18_V1_Epigenetics


title: G298C_7J13_V2_Epigenetics


title: G297E_9R32_V2_Epigenetics


title: G295J_4T11_V1_Epigenetics

value: HBV + BCG D3


title: G296D_4P15_V2_Epigenetics

value: Male


title: G295J_8H87_V2_Epigenetics

value: African


title: G294K_5L12_V1_Epigenetics

value: DELAYED D1


title: G293A_2T29_2_V2_Epigenetics

value: Blood


title: G294K_5G68_V2_Epigenetics


title: G293A_2T29_1_V2_Epigenetics


title: G292F_8D82_V2_Epigenetics

value: BCG D7


title: G292F_8G49_V1_Epigenetics


title: G291H_5T02_V1_Epigenetics

value: Fula


title: G291H_9D55_V2_Epigenetics


title: G360E_6F79_V2_Epigenetics

value: BCG D3


title: G290B_1D13_V2_Epigenetics

value: Mandinka


title: G289E_4C97_V2_Epigenetics

value: Female

value: Whole blood


title: G359E_8H06_1_V2_Epigenetics


title: G358D_7C28_2_V1_Epigenetics

value: HBV D3


title: G289E_8B99_V1_Epigenetics

value: Wollof


title: G360E_8L32_V1_Epigenetics


title: G357B_5H40_V2_Epigenetics

value: HBV D7


title: G356A_5C91_V1_Epigenetics

value: HBV D1


title: G356A_2C65_2_V2_Epigenetics


title: G356A_2C65_1_V2_Epigenetics


title: G355C_7H17_V1_Epigenetics

value: Serahule


title: G358D_7C28_1_V1_Epigenetics


title: G354H_4P79_2_V1_Epigenetics


title: G353K_3S74_V2_Epigenetics

value: HBV + BCG D7


title: G352G_2D84_V1_Epigenetics

value: Jola


title: G352G_3P84_V2_Epigenetics


title: G353K_2S72_V1_Epigenetics


title: G351J_6Q22_V1_Epigenetics

value: DELAYED D3


title: G351J_9U90_V2_Epigenetics

value: African


title: G350F_9R66_V1_Epigenetics

value: Male

value: BCG D1


title: G350F_9G62_V2_Epigenetics

value: Blood


title: G290B_8S03_V1_Epigenetics

value: HBV + BCG D1


title: G349G_1H03_V2_Epigenetics


title: G349G_2L34_V1_Epigenetics


title: G359E_8H06_2_V2_Epigenetics

value: BCG D7


title: G348C_7M34_2_V1_Epigenetics

value: Mandinka


title: G346D_2C87_V1_Epigenetics

value: Female

value: BCG D3


title: G348C_7M34_1_V1_Epigenetics

value: Whole blood


title: G346D_7Q95_V2_Epigenetics


title: G345J_8Q06_1_V1_Epigenetics


title: G347E_3P01_1_V2_Epigenetics

value: DELAYED D1


title: G345J_8Q06_2_V1_Epigenetics


title: G355C_2L14_V2_Epigenetics


title: G343A_9S73_2_V1_Epigenetics

value: DELAYED D7


title: G354H_4P79_1_V1_Epigenetics

value: HBV + BCG D3


title: G342F_6J59_2_V1_Epigenetics

value: Others


title: G341H_1F00_V2_Epigenetics


title: G342F_6J59_1_V1_Epigenetics


title: G344K_5D22_V2_Epigenetics


title: G341H_8B21_V1_Epigenetics


title: G340B_6U42_V2_Epigenetics


title: G340B_1U20_V1_Epigenetics


title: G339B_2Q53_V1_Epigenetics

value: HBV D7


title: G338J_5L65_V1_Epigenetics


title: G285C_3C27_V2_Epigenetics


title: G337F_4Q63_V1_Epigenetics

value: Fula


title: G347E_3P01_2_V2_Epigenetics


title: G337F_5L20_V2_Epigenetics


title: G338J_6L81_V2_Epigenetics


title: G339B_5Q94_V2_Epigenetics


title: G284H_9T32_V1_Epigenetics


title: G285C_3P40_V1_Epigenetics


title: G284H_9F64_V2_Epigenetics


title: G344K_9M32_V1_Epigenetics


title: G281J_2M69_V2_Epigenetics

value: HBV + BCG D7


title: G282G_4H27_2_V1_Epigenetics

value: African


title: G282G_4H27_1_V1_Epigenetics


title: G280F_9R22_V2_Epigenetics

value: Male

value: HBV D3


title: G343A_9S73_1_V1_Epigenetics

value: Blood


title: G280F_2K25_V1_Epigenetics


title: G283K_6R25_V1_Epigenetics

value: DELAYED D3


title: G279F_2A17_V2_Epigenetics


title: G279F_5Q53_V1_Epigenetics


title: G278A_2P67_V2_Epigenetics

value: BCG D1


title: G276H_4S10_V1_Epigenetics


title: G276H_9G98_V2_Epigenetics


title: G275B_6Q67_V2_Epigenetics

value: Mandinka


title: G275B_7K99_V1_Epigenetics

value: Female


title: G273J_8U58_V1_Epigenetics


title: G273J_4G80_V2_Epigenetics


title: G274G_2G10_V2_Epigenetics

value: BCG D7


title: G271E_6Q16_V2_Epigenetics

value: Wollof

value: Whole blood


title: G272D_2H48_V2_Epigenetics


title: G272D_2K40_V1_Epigenetics


title: G271E_9J96_V1_Epigenetics


title: G269J_7G61_V2_Epigenetics

value: HBV D1


title: G269J_3A45_V1_Epigenetics


title: G283K_7P97_V2_Epigenetics


title: G278A_6D42_V1_Epigenetics


title: G266F_7S26_V1_Epigenetics


title: G281J_6S68_V1_Epigenetics


title: G265E_2M06_V2_Epigenetics

value: DELAYED D1


title: G270K_5L90_V2_Epigenetics

value: DELAYED D7


title: G265E_4C55_V1_Epigenetics

value: Others


title: G268H_7F76_V2_Epigenetics

value: HBV + BCG D1


title: G267K_8F83_V1_Epigenetics

value: Fula


title: G264A_5K58_V1_Epigenetics

value: African

value: HBV + BCG D7


title: G267K_8F27_V2_Epigenetics

value: Male


title: G261B_4H67_V2_Epigenetics

value: Blood

value: BCG D3


title: G262C_7C19_V1_Epigenetics

value: HBV D7


title: G261B_1A67_V1_Epigenetics

value: Mandinka


title: G260G_7Q68_V1_Epigenetics

value: Female


title: G277C_3K14_V1_Epigenetics

value: DELAYED D3


title: G277C_2U02_V2_Epigenetics


title: G259B_1H23_V1_Epigenetics

value: Serahule


title: G274G_1R61_V1_Epigenetics

value: Whole blood

value: BCG D7


title: G264A_7T75_V2_Epigenetics


title: G263D_9P74_V1_Epigenetics

value: Wollof

value: BCG D1


title: G255A_5J31_V2_Epigenetics

value: HBV D1


title: G270K_7M87_V1_Epigenetics

value: DELAYED D7


title: G254C_1D74_V1_Epigenetics

value: Others


title: G262C_9F94_V2_Epigenetics

value: African


title: G268H_2T85_V1_Epigenetics

value: HBV + BCG D1


title: G263D_4Q61_V2_Epigenetics

value: Male


title: G266F_6K11_V2_Epigenetics

value: Blood


title: G257F_4A30_V2_Epigenetics


title: G258J_5Q97_V1_Epigenetics


title: G257F_7G24_V1_Epigenetics


title: G260G_1P57_V2_Epigenetics


title: G259B_2Q90_V2_Epigenetics


title: G252H_3B40_V1_Epigenetics

value: Fula


title: G251G_8B47_V2_Epigenetics


title: G256K_1K99_V2_Epigenetics

value: HBV + BCG D3


title: G253E_2S22_V1_Epigenetics


title: G252H_3U55_V2_Epigenetics


title: G250D_3H63_V1_Epigenetics

value: Jola


title: G258J_4A60_V2_Epigenetics

value: Female


title: G251G_4F36_V1_Epigenetics


title: G250D_1D44_V2_Epigenetics


title: G249D_8F13_V2_Epigenetics

value: Mandinka


title: G249D_6T20_V1_Epigenetics


title: G248G_6G21_V2_Epigenetics

value: DELAYED D1


title: G256K_2B24_V1_Epigenetics

value: Whole blood


title: G255A_1T73_V1_Epigenetics


title: G247J_5G03_V1_Epigenetics

value: BCG D3


title: G254C_3L47_V2_Epigenetics

value: BCG D7


title: G253E_4B33_V2_Epigenetics


title: G245F_9F12_V1_Epigenetics

value: Serahule


title: G247J_1D91_V2_Epigenetics


title: G248G_1F47_V1_Epigenetics

value: Wollof


title: G246E_2T20_V2_Epigenetics


title: G244B_5U61_V2_Epigenetics