title: unknown, P1aD7, filtered out, rep372

description:
P1a_36
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aD6, OFF, rep371

status: Public on Sep 02 2024

type: SRA

city: Baltimore

first: Rebecca

last: James

state: MD

address: 725 N. Wolfe Street

department: Neuroscience

country: USA

institute: Johns Hopkins University

description:
P1a_35
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

library_source: transcriptomic single cell

data_processing:
Single-cell RNA sequencing FASTQ files were aligned to the GRCm38.p6 (mm10) mouse reference genome using HISAT2 v2.1.0. SAM files were converted to BAM files using SAMtools v1.3.1. Transcript abundance estimation and normalization were performed using the Cuffquant and Cuffnorm tools, respectively, in Cufflinks v2.2.1. Downstream analyses were performed using Monocle2 in RStudio.
Assembly: mm10
Supplementary files format and content: Supplementary files format and content: Cuffnorm matrix containing FPKM values for each gene for each cell Supplementary files format and content: Cuffnorm matrix containing annotations for each gene Supplementary files format and content: Cuffnorm matrix containing annotations for each sample
Supplementary files format and content: Some processed data files without data - they are empty files because the supplied reference annotation GTF file we used in Cufflinks to assemble the transcriptomes did not contain TSS/ CDS gene attributes. I

molecule: polyA RNA

organism: Mus musculus

source_name: starburst amacrine cell

extract_protocol:
Retinas from ChatCre/+; ROSA-LSL-TD-Tomato mice were isolated at P1, P4, P8, P11 and P16 in ice cold HBSS, and the retinal pigmented epithelium and inner limiting membranes were removed. Retinas were digested with papain, triturated slowly 15-20 time with a P1000 pipet tip, strained into a 50 mL conical tube, and pelleted for 3 minutes at 1.3k rpm. The pellet was gently resuspended and cells were washed three times in ice cold Hibernate A media lacking Ca2+, Mg2+, and phenol red, with pelleting between the washes. Care was taken to tap the tube gently to dislodge the pellet before adding media and resuspending the pellet, to prevent cell lysis and subsequent accumulation of DNA and cellular debris, which forms as a sticky gel-like substance in the supernatant. Washed and resuspended cells in ice cold Hibernate A were subjected to FACS to isolate single cells in cell lysis buffer before proceeding with Smart-seq2 mRNA sequencing as in Chevee et al., 2018.
A modified Smart-seq2 mRNA sequencing protocol was used to construct libraries, described in Chevee et al., 2018.

tag: tissue type

value: retina

tag: cell line

value: starburst amacrine cell

tag: genotype/strain

tag: age

value: Postnatal day 1


title: T-CAND_01 [L75960_Track-119550]

city: Kiel

first: Seyed Mohammd Mahdi

last: Rasa

state: Schleswig-Holstein

address: Michaelisstrasse 5

department: Institut for Immunology

country: Germany

institute: Universitätsklinikum Schleswig-Holstein

description:
RawExpressionCountTable.csv
TCR_data.csv

data_processing:
library strategy: Plate base Single cell RNA seq (SMARTseq2)
Fragments were aligned to the human reference genome hg38 with support of Ensembl 98 splice sites using the aligner gsnap (v2019-06-10).
Counts per gene and cell were obtained based on the overlap of the uniquely mapped fragments with the same Ensembl annotation using featureCounts (v2.0.1)
T-cell receptor sequences were assembled per cell using TraCeR (v0.5)
Assembly: hg38
Supplementary files format and content: Counts per gene per cell, CSV
Supplementary files format and content: T-cell receptor sequences, CSV

organism: Homo sapiens

source_name: Blood

growth_protocol: 2.5-5x10^7 PBMCs were plated in 2 ml RPMI-1640 medium (GIBCO), supplemented with 5% (v/v) human AB-serum (Sigma Aldrich, Schnelldorf, Germany) in 6-well cell culture plates.

extract_protocol:
CD154+ memory cells were isolated by MACS and further purified by FACS sorting on a FACS Aria Fusion (BD Bioscience, San Jose, CA, USA) based on dual expression of CD154 and CD69 and expression of CD45RO. Cells were directly sorted into skirted 96-well PCR plates which were equipped with 2 µl lysis buffer (nuclease-free water with 0.2% Triton-X 100 solution (Roche Diagnostics GmbH, Mannheim, Germany) with 4 U/µL RNase Inhibitor (New England Biolabs)) in advance. After FACS sorting plates were shortly centrifuged (30 sec, 200xg) and immediately frozen at -80°C until shipment.
Library preparation and sequencing was performed at the DRESDEN-concept Genome Center (DcGC, TU Dresden, Germany). The workflow was based on the previously described SMARTseq2 protocol 81. After thawing the samples, 2 ul of a primer mix was added (5 mM dNTP (Invitrogen), 0.5 uM dT-primer*, 4 U RNase Inhibitor (NEB)). RNA was denatured for 3 minutes at 72°C and the reverse transcription was performed at 42°C for 90 min after filling up to 10 ul with RT buffer mix for a final concentration of 1X superscript II buffer (Invitrogen), 1 M betaine, 5 mM DTT, 6 mM MgCl2, 1 uM TSO-primer*, 9 U RNase Inhibitor and 90 U Superscript II. After synthesis, the reverse transcriptase was inactivated at 70°C for 15 min. The cDNA was amplified using 2X Kapa HiFi HotStart Readymix (Roche) at a final 1X concentration and 0.1 uM UP-primer* under following cycling conditions: initial denaturation at 98°C for 3 min, 22 cycles [98°C 20 sec, 67°C 15 sec, 72°C 6 min] and final elongation at 72°C for 5 min. The amplified cDNA is purified using 0.6X volume of hydrophobic Sera-Mag Beads (Cytvia: GE24152105050250,) and DNA was eluted in 12 ul nuclease free water. The cDNA quality and concentration of a few representative samples was determined with the Fragment Analyzer (Agilent). For library preparation, 2 µl amplified cDNA was tagmented in 1X Tagmentation Buffer using 0.8 µl bead-linked transposome (Illumina DNA Prep, (M) Tagmentation, Illumina) at 55°C for 15 min in a total volume of 4 µL. The reaction was stopped by adding 1 µl of 0.1 % SDS (37°C, 15 min). Magnetic beads were bound to a magnet, the supernatant was removed, beads were resuspended in 4 µl indexing PCR Mix containing 1x KAPA Hifi HotStart Ready Mix (Roche). After adding 700 nM unique dual indexing primers (i5 and i7) using Echo Acoustic Liquid Handler (Echo 525, Beckman Coulter), the reaction mixture was subjected to a PCR (72°C 3 min, 98°C 30 sec, 12 cycles [98°C 10 sec, 63°C 20 sec, 72°C 1 min], 72°C 5 min). After PCR, libraries are quantified with a Tecan plate reader Infinite 200 pro in 384 well black flat bottom low volume plates (Corning) using AccuBlue Broad range chemistry (Biotium) and equimolarly pooled using Echo Acoustic Liquid Handler (Echo 525, Beckman Coulter GmbH). The pooled libraries were then purified with 0.9x volume Sera-Mag SpeedBeads, followed by a double size selection with 0.6x and 0.9x volume of beads. Re-double size selection with 0.6x and 0.9x volume of beads was performed if needed.

treatment_protocol: PBMC were stimulated for 7 h in presence of 1 µg/ml CD40 pure antibody (Miltenyi Biotec, Bergisch Gladbach, Germany) with AQP4, Influenza A H1N1 (HA) and C.albicans MP65 peptide pools or PMA/Ionomycin

tag: tissue

value: Blood

value: CD4 T cell

tag: cell type

value: T cell

tag: treatment

value: C.albicans MP65 peptide pool


title: T-CAND_01 [L75959_Track-119408]


title: SAC, P1aD5, OFF, rep370

description:
P1a_34
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aD4, OFF, rep369

description:
P1a_33
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75958_Track-119595]


title: T-CAND_01 [L75966_Track-119417]


title: unknown, P1aD3, filtered out, rep368

description:
P1a_32
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aD2, OFF, rep367

description:
P1a_31
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75957_Track-119393]


title: SAC, P1aD1, ON, rep366

description:
P1a_30
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75956_Track-119599]


title: T-CAND_01 [L75954_Track-119541]


title: T-CAND_01 [L75955_Track-119669]


title: SAC, P1aD12, ON, rep365

description:
P1a_29
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75952_Track-119504]


title: T-CAND_01 [L75961_Track-119378]


title: T-CAND_01 [L75953_Track-119447]


title: SAC, P1aD11, OFF, rep364

description:
P1a_28
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aD10, ON, rep363

description:
P1a_27
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: unknown, P1aC7, filtered out, rep360

description:
P1a_24
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75951_Track-119726]


title: T-CAND_01 [L75948_Track-119609]


title: SAC, P1aC8, ON, rep361

description:
P1a_25
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75949_Track-119582]


title: T-CAND_01 [L75950_Track-119476]


title: SAC, P1aC9, ON, rep362

description:
P1a_26
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75947_Track-119575]


title: SAC, P1aC5, OFF, rep359

description:
P1a_23
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aC4, ON, rep358

description:
P1a_22
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75946_Track-119560]


title: SAC, P1aC3, ON, rep357

description:
P1a_21
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75945_Track-119639]


title: unknown, P1aC2, filtered out, rep356

description:
P1a_20
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aC1, ON, rep355

description:
P1a_19
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75943_Track-119589]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: SAC, P1aC12, ON, rep354

description:
P1a_18
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75942_Track-119538]


title: T-CAND_01 [L75941_Track-119432]


title: SAC, P1aC11, OFF, rep353

description:
P1a_17
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75940_Track-119513]


title: unknown, P1aC10, filtered out, rep352

description:
P1a_16
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75939_Track-119429]


title: SAC, P1aB8, ON, rep350

description:
P1a_14
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75937_Track-119553]


title: T-CAND_01 [L75936_Track-119722]


title: T-CAND_01 [L75938_Track-119608]


title: T-CAND_01 [L75935_Track-119694]


title: SAC, P1aB5, ON, rep347

description:
P1a_11
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aB4, ON, rep346

description:
P1a_10
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aB7, ON, rep349

description:
P1a_13
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75933_Track-119645]


title: T-CAND_01 [L75932_Track-119568]


title: T-CAND_01 [L75931_Track-119711]


title: SAC, P1aB6, ON, rep348

description:
P1a_12
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75934_Track-119712]


title: SAC, P1aB12, OFF, rep342

description:
P1a_6
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: unknown, P1aB2, filtered out, rep344

description:
P1a_8
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aB3, OFF, rep345

description:
P1a_9
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aB1, ON, rep343

description:
P1a_7
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75944_Track-119706]


title: SAC, P1aB11, ON, rep341

description:
P1a_5
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75930_Track-119583]


title: SAC, P1aB9, OFF, rep351

description:
P1a_15
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75929_Track-119661]


title: SAC, P1aB10, ON, rep340

description:
P1a_4
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75926_Track-119468]


title: SAC, P1aA7, ON, rep339

description:
P1a_3
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75928_Track-119548]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-CAND_01 [L75927_Track-119360]


title: SAC, P1aA6, ON, rep338

description:
P1a_2
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75925_Track-119676]


title: SAC, P16ZF6, n/a, rep332

description:
P16b_91
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: Postnatal day 16


title: SAC, P1aA12, ON, rep337

description:
P1a_1
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZF8, n/a, rep334

description:
P16b_93
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P1aA10, filtered out, rep336

description:
P1a_0
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZF9, n/a, rep335

description:
P16b_94
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75919_Track-119440]


title: T-CAND_01 [L75923_Track-119579]


title: T-CAND_01 [L75922_Track-119719]


title: T-CAND_01 [L75920_Track-119622]


title: SAC, P16ZF3, n/a, rep329

description:
P16b_88
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75917_Track-119368]


title: T-CAND_01 [L75916_Track-119485]


title: SAC, P16ZF5, n/a, rep331

description:
P16b_90
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75921_Track-119658]


title: SAC, P16ZF2, n/a, rep328

description:
P16b_87
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75924_Track-119603]


title: T-CAND_01 [L75915_Track-119762]


title: T-CAND_01 [L75918_Track-119367]


title: SAC, P16ZF12, n/a, rep327

description:
P16b_86
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75913_Track-119540]


title: SAC, P16ZF11, n/a, rep326

description:
P16b_85
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZF10, n/a, rep325

description:
P16b_84
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE8, n/a, rep323

description:
P16b_82
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75914_Track-119428]


title: T-CAND_01 [L75912_Track-119685]


title: SAC, P16ZF7, n/a, rep333

description:
P16b_92
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75911_Track-119531]


title: SAC, P16ZE7, n/a, rep322

description:
P16b_81
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE6, n/a, rep321

description:
P16b_80
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE5, n/a, rep320

description:
P16b_79
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75909_Track-119602]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-CAND_01 [L75910_Track-119612]


title: SAC, P16ZE4, n/a, rep319

description:
P16b_78
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75907_Track-119392]


title: T-CAND_01 [L75906_Track-119404]


title: SAC, P16ZE2, n/a, rep317

description:
P16b_76
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZF4, n/a, rep330

description:
P16b_89
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE1, n/a, rep316

description:
P16b_75
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE12, n/a, rep315

description:
P16b_74
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75904_Track-119625]


title: SAC, P16ZE9, n/a, rep324

description:
P16b_83
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZE11, n/a, rep314

description:
P16b_73
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75901_Track-119466]


title: SAC, P16ZE10, n/a, rep313

description:
P16b_72
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZD9, n/a, rep312

description:
P16b_71
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75899_Track-119403]


title: T-CAND_01 [L75902_Track-119401]


title: T-AQP4_03 [L51733_Track-94061]

value: AQP4 peptide pool


title: SAC, P16ZD6, n/a, rep309

description:
P16b_68
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75898_Track-119610]


title: SAC, P16ZD5, n/a, rep308

description:
P16b_67
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZD7, n/a, rep310

description:
P16b_69
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75908_Track-119660]


title: SAC, P16ZE3, n/a, rep318

description:
P16b_77
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51723_Track-94011]


title: SAC, P16ZD4, n/a, rep307

description:
P16b_66
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZD3, n/a, rep306

description:
P16b_65
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75905_Track-119427]


title: SAC, P16ZD2, n/a, rep305

description:
P16b_64
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51721_Track-94047]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-AQP4_03 [L51719_Track-94072]


title: SAC, P16ZD11, n/a, rep302

description:
P16b_61
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-CAND_01 [L75900_Track-119671]


title: T-AQP4_03 [L51720_Track-94079]


title: T-CAND_01 [L75903_Track-119505]


title: T-AQP4_03 [L51717_Track-94052]


title: SAC, P16ZD12, n/a, rep303

description:
P16b_62
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZD1, n/a, rep304

description:
P16b_63
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51716_Track-94062]


title: SAC, P16ZC9, n/a, rep300

description:
P16b_59
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51718_Track-94089]


title: SAC, P16ZD10, n/a, rep301

description:
P16b_60
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51715_Track-94025]


title: SAC, P16ZC8, n/a, rep299

description:
P16b_58
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZC7, n/a, rep298

description:
P16b_57
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51724_Track-94005]


title: SAC, P16ZC6, n/a, rep297

description:
P16b_56
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51713_Track-94055]


title: T-AQP4_03 [L51714_Track-94078]


title: T-AQP4_03 [L51722_Track-94075]


title: SAC, P16ZC4, n/a, rep295

description:
P16b_54
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZC5, n/a, rep296

description:
P16b_55
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51712_Track-94077]


title: T-AQP4_03 [L51711_Track-94074]


title: SAC, P16ZC3, n/a, rep294

description:
P16b_53
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZC2, n/a, rep293

description:
P16b_52
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51710_Track-94091]


title: T-AQP4_03 [L51709_Track-94045]


title: SAC, P16ZC12, n/a, rep291

description:
P16b_50
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZC11, n/a, rep290

description:
P16b_49
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51706_Track-94010]


title: T-AQP4_03 [L51707_Track-94087]


title: SAC, P16ZC10, n/a, rep289

description:
P16b_48
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51705_Track-94009]


title: SAC, P16ZB9, n/a, rep288

description:
P16b_47
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB7, n/a, rep286

description:
P16b_45
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51704_Track-93998]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-AQP4_03 [L51702_Track-94037]


title: T-AQP4_03 [L51703_Track-94030]


title: T-AQP4_03 [L51701_Track-94040]


title: T-AQP4_03 [L51699_Track-94033]


title: SAC, P16ZB3, n/a, rep282

description:
P16b_41
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB5, n/a, rep284

description:
P16b_43
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51700_Track-94036]


title: SAC, P16ZB1, n/a, rep280

description:
P16b_39
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51695_Track-94018]


title: T-AQP4_03 [L51698_Track-94063]


title: T-AQP4_03 [L51708_Track-94019]


title: SAC, P16ZB2, n/a, rep281

description:
P16b_40
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51697_Track-94086]


title: SAC, P16ZB11, n/a, rep278

description:
P16b_37
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51696_Track-94034]


title: SAC, P16ZB8, n/a, rep287

description:
P16b_46
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZA9, n/a, rep276

description:
P16b_35
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51694_Track-94013]


title: SAC, P16ZA8, n/a, rep275

description:
P16b_34
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB12, n/a, rep279

description:
P16b_38
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB6, n/a, rep285

description:
P16b_44
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB10, n/a, rep277

description:
P16b_36
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51692_Track-94039]


title: T-AQP4_03 [L51693_Track-94066]


title: SAC, P16ZA7, n/a, rep274

description:
P16b_33
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZC1, n/a, rep292

description:
P16b_51
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZB4, n/a, rep283

description:
P16b_42
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51690_Track-94021]


title: T-AQP4_03 [L51691_Track-94022]


title: T-AQP4_03 [L51689_Track-94023]


title: SAC, P16ZA5, n/a, rep272

description:
P16b_31
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51688_Track-94016]


title: T-AQP4_03 [L51687_Track-94076]


title: SAC, P16ZA3, n/a, rep270

description:
P16b_29
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZA4, n/a, rep271

description:
P16b_30
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51686_Track-94081]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-AQP4_03 [L51685_Track-94080]


title: SAC, P16ZA2, n/a, rep269

description:
P16b_28
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZA1, n/a, rep268

description:
P16b_27
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZA12, n/a, rep267

description:
P16b_26
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51684_Track-94083]


title: T-AQP4_03 [L51683_Track-94046]


title: SAC, P16ZA11, n/a, rep266

description:
P16b_25
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZA10, n/a, rep265

description:
P16b_24
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51681_Track-93999]


title: SAC, P16Z8, n/a, rep263

description:
P16b_22
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51679_Track-94029]


title: T-AQP4_03 [L51682_Track-94038]


title: SAC, P16Z6, n/a, rep261

description:
P16b_20
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51678_Track-94043]


title: T-AQP4_03 [L51680_Track-93997]


title: SAC, P16Z5, n/a, rep260

description:
P16b_19
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z4, n/a, rep259

description:
P16b_18
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z9, n/a, rep264

description:
P16b_23
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51677_Track-94060]


title: SAC, P16Z3, n/a, rep258

description:
P16b_17
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z2, n/a, rep257

description:
P16b_16
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z1, n/a, rep256

description:
P16b_15
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z12, n/a, rep255

description:
P16b_14
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16ZD8, n/a, rep311

description:
P16b_70
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z11, n/a, rep254

description:
P16b_13
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51675_Track-94056]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: SAC, P16Z7, n/a, rep262

description:
P16b_21
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51674_Track-94001]


title: SAC, P16Y9, n/a, rep252

description:
P16b_11
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: ExVivoBlood_DR_rep4

type: RNA

city: Beijing

first: Bingyan

last: Wang

address: 49 North Garden Rd

department: General surgery

country: China

institute: Peking University Third Hospital

description: Gene expression in DR human blood

hyb_protocol: The labeled cRNAs were hybridized onto the Arraystar Human circRNA Arrays V2(8x15K, Arraystar), and incubated for 17 hours at 65'C in an Agilent Hybridization Oven.

scan_protocol: Slides were scanned with the Agilent Scanner G2505C

data_processing: Data was extracted using Agilent Feature Extraction software. A series of data processing including quantile normalization were performed usingthe R software limma package. The circRNAs that at least 5 out of 10 samples have flags in p or M (defined by GeneSpring software) were retained for furtherdifferential analyses.

molecule: total RNA

source_name: Peripheral Blood,  DR, replicate 1

label_protocol: Total RNA from each sample was treated with Rnase R to enrich circular RNA. Theenriched circular RNA was then amplified and transcribed into fluorescent cRNAutilizing ramdom primer according to Arraystar Super RNA Labeling protocol (ArraystarInc.

extract_protocol: Trizol LS kit (Invitrogen) was used to extract total RNA from the serum of T2DM patients. NanoDrop ND-1000 was used to determine the purity and concentration of total RNA from each sample.Total RNA was digested with RNase R (Epicentre, Inc.) to remove linear RNA and enrich circRNAs. The extracted RNA was amplified and labeled with Arraystar Super RNA Labeling Kit  (Arraystar, Rockville, MD, USA). Labeled cRNAs were hybridized to Arraystar Human Circrnas Array V2 (8x15K, Arraystar, Rockville, MD, USA). CircRNA microarray results were analyzed using the Agilent Scanner G2505C(Agilent).

value: whole blood

tag: gender

value: male

tag: disease state

value: DR


title: T-AQP4_03 [L51673_Track-94051]


title: ExVivoBlood_DR_rep5

description: Gene expression in DR human blood


title: SAC, P16Y7, n/a, rep250

description:
P16b_9
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: ExVivoBlood_DR_rep3

description: Gene expression in DR human blood


title: ExVivoBlood_non-DR_rep5

description: Gene expression in non-DR human blood

source_name: Peripheral Blood, non-DR, replicate 1

value: non-DR


title: T-AQP4_03 [L51676_Track-94031]


title: SAC, P16Y6, n/a, rep249

description:
P16b_8
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51672_Track-94024]


title: SAC, P16Y5, n/a, rep248

description:
P16b_7
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: ExVivoBlood_DR_rep1

description: Gene expression in DR human blood

value: female


title: SAC, P16Y4, n/a, rep247

description:
P16b_6
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Z10, n/a, rep253

description:
P16b_12
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Y2, n/a, rep245

description:
P16b_4
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Y3, n/a, rep246

description:
P16b_5
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: ExVivoBlood_non-DR_rep4

description: Gene expression in non-DR human blood


title: T-AQP4_03 [L51671_Track-94042]


title: SAC, P16Y1, n/a, rep244

description:
P16b_3
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Y8, n/a, rep251

description:
P16b_10
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51670_Track-94050]


title: ExVivoBlood_DR_rep2

description: Gene expression in DR human blood


title: SAC, P16Y11, n/a, rep242

description:
P16b_1
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Y12, n/a, rep243

description:
P16b_2
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51669_Track-94020]


title: SAC, P16X9, n/a, rep240

description:
P16a_90
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HG3_3

city: Krakow

first: Tomasz

last: Szmatoła

state: Małopolskie

address: Mickiewicza 21

department: OMEI

country: Poland

institute: University of Agriculture in Krakow

library_source: transcriptomic

data_processing:
Quality control, FastQC, v0.11.9
Filtering, Flexbar, 3.5.0
Alignment, STAR, 2.7.5c
Reads counting, Htseq-count, 1.99.2
Reads normalization, DESeq2 3.16
Assembly: GRCm39
Supplementary files format and content: Processed data files include raw read counts for all samples in tabular format, text files (.txt)

source_name: hypothalamic cells

extract_protocol:
Standard procedure of  PureLink™ RNA Mini Kit (Ambion) with DNAse treatment
Standard protocol of VAHTS Universal V8 RNA-seq Library Prep Kit for Illumina

value: hypothalamic cells


title: ExVivoBlood_non-DR_rep1

description: Gene expression in non-DR human blood


title: SAC, P16X8, n/a, rep239

description:
P16a_89
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51667_Track-94014]


title: HG3_1


title: ExVivoBlood_non-DR_rep3

description: Gene expression in non-DR human blood


title: T-AQP4_03 [L51665_Track-94058]


title: SAC, P16X3, n/a, rep234

description:
P16a_84
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HG3_2


title: HG2_2


title: HG2_1


title: SAC, P16X7, n/a, rep238

description:
P16a_88
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51663_Track-94006]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-AQP4_03 [L51666_Track-94002]


title: SAC, P16X11, n/a, rep231

description:
P16a_81
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16X5, n/a, rep236

description:
P16a_86
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16X10, n/a, rep230

description:
P16a_80
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HG1_3


title: SAC, P16X6, n/a, rep237

description:
P16a_87
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16W8, n/a, rep228

description:
P16a_78
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: ExVivoBlood_non-DR_rep2

description: Gene expression in non-DR human blood


title: SAC, P16X4, n/a, rep235

description:
P16a_85
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HG2_3


title: T-AQP4_03 [L51661_Track-94048]


title: SAC, P16Y10, n/a, rep241

description:
P16b_0
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16X2, n/a, rep233

description:
P16a_83
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51660_Track-94032]


title: HG1_1


title: T-AQP4_03 [L51664_Track-94084]


title: SAC, P16W4, n/a, rep224

description:
P16a_74
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16X12, n/a, rep232

description:
P16a_82
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51659_Track-94003]


title: SAC, P16W9, n/a, rep229

description:
P16a_79
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51668_Track-94064]


title: SAC, P16W3, n/a, rep223

description:
P16a_73
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HGC_2


title: SAC, P16W2, n/a, rep222

description:
P16a_72
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51662_Track-94035]


title: T-AQP4_03 [L51658_Track-94041]


title: SAC, P16W7, n/a, rep227

description:
P16a_77
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16W1, n/a, rep221

description:
P16a_71
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16W6, n/a, rep226

description:
P16a_76
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HGC_1


title: SAC, P16W5, n/a, rep225

description:
P16a_75
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HG1_2


title: SAC, P16W11, n/a, rep219

description:
P16a_69
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: HGC_3


title: SAC, P16W10, n/a, rep218

description:
P16a_68
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16W12, n/a, rep220

description:
P16a_70
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16V9, n/a, rep217

description:
P16a_67
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51656_Track-94059]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: NG3_2


title: SAC, P16V7, n/a, rep215

description:
P16a_65
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NG3_1


title: SAC, P16V6, n/a, rep214

description:
P16a_64
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16V5, n/a, rep213

description:
P16a_63
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51655_Track-94057]


title: NG2_3


title: T-AQP4_03 [L51654_Track-94053]


title: T-AQP4_03 [L51653_Track-94073]


title: SAC, P16V4, n/a, rep212

description:
P16a_62
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16V1, n/a, rep209

description:
P16a_59
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16V2, n/a, rep210

description:
P16a_60
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NG2_2


title: SAC, P16V3, n/a, rep211

description:
P16a_61
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NG2_1


title: NG3_3


title: SAC, P16V11, n/a, rep208

description:
P16a_58
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51657_Track-94015]


title: SAC, P16U9, n/a, rep206

description:
P16a_56
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NG1_3


title: SAC, P16U8, n/a, rep205

description:
P16a_55
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51651_Track-94085]


title: SAC, P16ZA6, n/a, rep273

description:
P16b_32
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NG1_2


title: SAC, P16U6, n/a, rep203

description:
P16a_53
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16V10, n/a, rep207

description:
P16a_57
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51649_Track-94090]


title: T-AQP4_03 [L51650_Track-94082]


title: NG1_1


title: SAC, P16U4, n/a, rep201

description:
P16a_51
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16U7, n/a, rep204

description:
P16a_54
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16U5, n/a, rep202

description:
P16a_52
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51648_Track-94054]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: T-AQP4_03 [L51652_Track-94049]


title: SAC, P16V8, n/a, rep216

description:
P16a_66
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16U3, n/a, rep200

description:
P16a_50
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NGC_3


title: SAC, P16U2, n/a, rep199

description:
P16a_49
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51647_Track-94067]


title: SAC, P16U1, n/a, rep198

description:
P16a_48
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16U12, n/a, rep197

description:
P16a_47
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: NGC_2


title: NGC_1


title: T-AQP4_03 [L51646_Track-94088]


title: SAC, P16U11, n/a, rep196

description:
P16a_46
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16U10, n/a, rep195

description:
P16a_45
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16T9, n/a, rep194

description:
P16a_44
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51645_Track-94000]


title: E135HetR1

city: Memphis

first: Jay

last: Bikoff

state: TN

address: 262 Danny Thomas Place

institute: St. Jude Children's Research Hospital

description: 10x Genomics

data_processing:
Cell Ranger version 7.0.0
Assembly: mm10
Supplementary files format and content: Cell Ranger filtered feature barcode matrices: barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz

molecule: nuclear RNA

source_name: Spinal cord

extract_protocol:
Mice were intracardially perfused with cold, oxygenated artificial cerebral spinal fluid (ACSF) and spinal cords were quickly extruded and flash frozen. Nuclei were collecting by physical dissociation in lysis buffer and isolated by centrifugation through a sucrose density gradient. GFP+ nuclei were enriched by Fluorescence Activated Cell Sorting (FACS) and manually inspected and counted on a hemacytometer.
Library construction was performed according to the manufacturer's instructions: 10X Genomics Chromium Next GEM Single Cell 3' Gene Expression version 3.1 using the Single Index Kit T Set A.
single nucleus RNA sequencing (snRNA-seq)

value: Spinal cord

tag: genotype

tag: replicate

tag: region

value: Whole cord


title: SAC, P16T8, n/a, rep193

description:
P16a_43
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: retina


title: SAC, P16T7, n/a, rep192

description:
P16a_42
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: starburst amacrine cell


title: P0KoR2

description: 10x Genomics

value: En1::Cre homozygous; RC.lsl.Sun1-sfGFP


title: T-AQP4_03 [L51644_Track-94069]

value: Blood


title: SAC, P16T6, n/a, rep191

description:
P16a_41
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51643_Track-94070]

value: CD4 T cell


title: SAC, P16T5, n/a, rep190

description:
P16a_40
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16T2, n/a, rep187

description:
P16a_37
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16T4, n/a, rep189

description:
P16a_39
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P0KoR1

description: 10x Genomics


title: T-AQP4_03 [L51641_Track-94044]

value: T cell


title: SAC, P16T1, n/a, rep186

description:
P16a_36
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P0HetR1

description: 10x Genomics


title: T-AQP4_03 [L51642_Track-94068]


title: P0HetR2

description: 10x Genomics


title: T-AQP4_03 [L51640_Track-94092]


title: P56TR2

description: 10x Genomics

value: Thoracic


title: SAC, P16T10, n/a, rep183

description:
P16a_33
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: Postnatal day 16


title: SAC, P16T12, n/a, rep185

description:
P16a_35
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16S8, n/a, rep181

description:
P16a_31
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P56TR1

description: 10x Genomics


title: T-AQP4_03 [L51638_Track-94071]

description:
RawExpressionCountTable.csv
TCR_data.csv

value: AQP4 peptide pool


title: SAC, P16S7, n/a, rep180

description:
P16a_30
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_03 [L51639_Track-94065]


title: T-AQP4_02 [L49940_Track-90492]


title: P56LR2

description: 10x Genomics

value: Lumbar


title: SAC, P16S9, n/a, rep182

description:
P16a_32
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16S5, n/a, rep178

description:
P16a_28
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P56LR1

description: 10x Genomics


title: SAC, P16S3, n/a, rep176

description:
P16a_26
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16S4, n/a, rep177

description:
P16a_27
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49939_Track-90398]


title: SAC, P16S6, n/a, rep179

description:
P16a_29
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16S2, n/a, rep175

description:
P16a_25
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16T3, n/a, rep188

description:
P16a_38
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16S1, n/a, rep174

description:
P16a_24
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49938_Track-90414]


title: SAC, P16R9, n/a, rep172

description:
P16a_22
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49937_Track-90390]


title: SAC, P16T11, n/a, rep184

description:
P16a_34
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P28TR2

description: 10x Genomics


title: SAC, P16S12, n/a, rep173

description:
P16a_23
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16R8, n/a, rep171

description:
P16a_21
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P56CR1

description: 10x Genomics

value: Cervical


title: SAC, P16R6, n/a, rep169

description:
P16a_19
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49936_Track-90513]


title: P28TR1

description: 10x Genomics


title: SAC, P16R4, n/a, rep167

description:
P16a_17
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16R5, n/a, rep168

description:
P16a_18
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49934_Track-90408]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: SAC, P16R7, n/a, rep170

description:
P16a_20
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P28LR2

description: 10x Genomics


title: SAC, P16R3, n/a, rep166

description:
P16a_16
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16R1, n/a, rep164

description:
P16a_14
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49933_Track-90432]


title: P28LR1

description: 10x Genomics


title: T-AQP4_02 [L49935_Track-90472]


title: P28CR2

description: 10x Genomics


title: P56CR2

description: 10x Genomics


title: SAC, P16R11, n/a, rep162

description:
P16a_12
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P28CR1

description: 10x Genomics


title: SAS-Fucci-KRTAP2-3 knockout

city: Bunkyo-ku

first: Kazuki

last: Takahashi

state: Tokyo

address: M&D Tower, Floor 7th, Room N708, 1-5-45 Yushima

country: Japan

institute: Tokyo Medical and Dental University

description: Dish culture

hyb_protocol: 0.6 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 250 ml containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 250 ml of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent SurePrint G3 Human GE 8x60K (G4851A) for 17 hours at 65Â°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37Â°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing:
The scanned images were analyzed with Feature Extraction Software 12.0.3.1 (Agilent) using default parameters (protocol GE1-107) to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.
We used GeneSpring to analyze our data. In setting for normalization we used [Baseline to median of control samples]. It will log-transform the data upon the extraction. Therefore the values shown as [0] represent [log2].

source_name: SAS-Fucci-KRTAP2-3 knockout

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.1 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions

growth_protocol: Fucci indced SAS oral cancer cell  were maintained in D-MEM (nakarai) containing 10% fetal bovine serum (FBS)

extract_protocol: RNA fractions were prepared using RNeasy Plus Mini Kit (Qiagen) following the manufacturer's recommendations.

tag: disease

value: Oral cancer

tag: genotype/variation

value: KRTAP2-3 knockout


title: SAC, P16R2, n/a, rep165

description:
P16a_15
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49931_Track-90428]


title: SAS-Fucci-WT

description: Dish culture

source_name: SAS-Fucci-WT

value: WT


title: SAC, P16Q9, n/a, rep160

description:
P16a_10
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49930_Track-90520]


title: SAS-Fucci-KRTAP2-3

description: Dish culture


title: P14TR2

description: 10x Genomics


title: T-AQP4_02 [L49928_Track-90470]


title: SAS-Fucci-Control

description: Dish culture

source_name: SAS-Fucci-Control

value: Control


title: P14LR2

description: 10x Genomics

value: Spinal cord


title: SAC, P16Q8, n/a, rep159

description:
P16a_9
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49927_Track-90448]


title: T-AQP4_02 [L49926_Track-90511]


title: P14LR1

description: 10x Genomics


title: SAC, P16Q7, n/a, rep158

description:
P16a_8
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: tubal ectopic pregnancy rep4

city: Shanghai

first: Xiaoya

last: Zhao

state: shanghai

address: No. 910, Hengshan Rd

department: Department of Obstetrics and Gynecology, International Peace Maternity and Child Health Hospital

institute: School of Medicine, Shanghai Jiaotong University

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to genome using HISAT2 with parameters -  dta t p 4
Normalized data were clculated using DEseq2 from Love, M.I., et al., 2014.
Genome_build: Homo_sapiens.GRCh38.99
Supplementary_files_format_and_content: tab-delimited text files include Normalized values for each sample
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample

source_name: placenta

extract_protocol:
placental villi were removed, digested, then the trophoblastic organoids were cultured, and RNA was harvested using Trizol reagent. NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (#E7530L, NEB, USA) was used with 2 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

value: placenta

tag: geatational days

tag: maternal age

value: trophoblastic organoid

tag: passages


title: tubal ectopic pregnancy rep3


title: P14CR2

description: 10x Genomics


title: SAC, P16R12, n/a, rep163

description:
P16a_13
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

tag: tissue type

value: retina

value: starburst amacrine cell


title: T-AQP4_02 [L49925_Track-90400]

value: Blood

tag: cell line


title: T-AQP4_02 [L49932_Track-90409]

value: CD4 T cell


title: SAC, P16Q5, n/a, rep156

description:
P16a_6
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

tag: genotype/strain


title: SAC, P16R10, n/a, rep161

description:
P16a_11
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

tag: age


title: tubal ectopic pregnancy rep2

tag: tissue


title: P0TR2

description: 10x Genomics


title: T-AQP4_02 [L49923_Track-90442]

tag: cell type

value: T cell


title: SAC, P16Q4, n/a, rep155

description:
P16a_5
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: SAC, P16Q3, n/a, rep154

description:
P16a_4
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P14TR1

description: 10x Genomics

value: Thoracic


title: P0TR1

description: 10x Genomics


title: T-AQP4_02 [L49922_Track-90532]

tag: treatment


title: intrauterine pregnancy rep5


title: SAC, P16Q2, n/a, rep153

description:
P16a_3
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: Postnatal day 16


title: intrauterine pregnancy rep4


title: T-AQP4_02 [L49921_Track-90464]

value: AQP4 peptide pool


title: SAC, P16Q6, n/a, rep157

description:
P16a_7
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P0LR2

description: 10x Genomics

value: Lumbar


title: SAC, P16Q12, n/a, rep152

description:
P16a_2
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: T-AQP4_02 [L49920_Track-90367]

description:
RawExpressionCountTable.csv
TCR_data.csv


title: P0LR1

description: 10x Genomics


title: SAC, P16Q11, n/a, rep151

description:
P16a_1
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: P14CR1

description: 10x Genomics

value: Cervical


title: T-AQP4_02 [L49924_Track-90523]


title: intrauterine pregnancy rep3


title: P0CR2

description: 10x Genomics


title: T-AQP4_02 [L49919_Track-90381]


title: intrauterine pregnancy rep2


title: SAC, P16Q10, n/a, rep150

description:
P16a_0
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt


title: intrauterine pregnancy rep1


title: tubal ectopic pregnancy rep1


title: P0CR1

description: 10x Genomics


title: T-AQP4_02 [L49918_Track-90489]


title: unknown, P11P8, filtered out, rep149

description:
P11b_74
cds.attr_table.txt
cds.count_table.txt
cds.fpkm_table.txt
genes.attr_table.txt
genes.count_table.txt
genes.fpkm_table.txt
isoforms.attr_table.txt
isoforms.count_table.txt
isoforms.fpkm_table.txt
tss_groups.attr_table.txt
tss_groups.count_table.txt
tss_groups.fpkm_table.txt

value: Postnatal day 11


title: T-AQP4_02 [L49916_Track-90471]