title: MSCCR_reGRID_1361_Biopsy_2112, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_136_Biopsy_272, UC participants,Sigmoid NonI tissue

status: Public on Sep 16 2022

type: SRA

city: new york city

first: Carmen

last: argmann

state: NY

address: 1425 Madison Avenue

country: USA

institute: MSSM

library_source: transcriptomic

data_processing:
Genomic alignment to GRCh37 of single-end RNA-seq reads was performed using 2-pass STAR. Default parameters for STAR were used, as were those for the quantification of aligned reads to GRCh37.75 gene features via featureCounts. Multimapping reads were flagged and discarded
Raw count data was pre-filtered to keep genes with CPM>0.5 for at least 3% of the samples
After filtering, count data was normalized via the weighted trimmed mean of M-values
Gene expression matrices were generated using the voom transformation and adjusted for technical variables (e.g. RIN, processing batch, rRNA rate and exonic rate) using the limma framework
Assembly: hg19
Supplementary files format and content: Matrix table with raw gene counts for every gene and every sample

molecule: total RNA

organism: Homo sapiens

source_name: Biopsy

extract_protocol:
RNA was isolated from frozen tissue using Qiagen QIAsymphony RNA Kit (cat.# 931636) on the QIAsymphony.
Preparation of the sequencing libraries used the RNA Tru Seq Kit (Illumina (Cat # RS-122-2001-48)

value: Male

tag: regionre

value: Sigmoid

tag: diseasetypere

value: UC

tag: typere

value: NonI

tag: diseasebi

value: IBD

value: Inactive

tag: nancyindex

tag: endoremiss

tag: historemiss


title: MSCCR_reGRID_136_Biopsy_274, UC participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1359_Biopsy_2108, Control participants,Rectum NonI tissue

value: Rectum

value: Control


title: MSCCR_reGRID_1359_Biopsy_2107, Control participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1355_Biopsy_2102, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1356_Biopsy_2104, Control participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_1356_Biopsy_2103, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1366_Biopsy_2122, CD participants,Rectum I tissue

value: CD

value: I

value: Active

value: Severe


title: MSCCR_reGRID_136_Biopsy_273, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1357_Biopsy_2106, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1354_Biopsy_2100, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1357_Biopsy_2105, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1354_Biopsy_2099, UC participants,Cecum I tissue


title: MSCCR_reGRID_1353_Biopsy_2097, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1362_Biopsy_2114, CD participants,Rectum I tissue


title: MSCCR_reGRID_1351_Biopsy_2095, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1351_Biopsy_2094, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1349_Biopsy_2093, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1353_Biopsy_2098, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1349_Biopsy_2092, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1348_Biopsy_2090, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1348_Biopsy_2091, Control participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_1345_Biopsy_2087, CD participants,Ileum NonI tissue

value: Male

value: Moderate


title: MSCCR_reGRID_1344_Biopsy_2085, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1343_Biopsy_2083, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1346_Biopsy_2088, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1344_Biopsy_2084, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1345_Biopsy_2086, CD participants,Rectum I tissue


title: MSCCR_reGRID_1346_Biopsy_2089, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1341_Biopsy_2081, UC participants,Ileum NonI tissue

value: UC


title: MSCCR_reGRID_1340_Biopsy_2080, Control participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_1355_Biopsy_2101, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_134_Biopsy_270, CD participants,Ileum I tissue

value: IBD


title: MSCCR_reGRID_1339_Biopsy_2078, CD participants,Rectum I tissue

value: Inactive


title: MSCCR_reGRID_1337_Biopsy_2076, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1335_Biopsy_2075, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1339_Biopsy_2077, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1352_Biopsy_2096, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1340_Biopsy_2079, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_134_Biopsy_271, CD participants,LeftColon I tissue


title: MSCCR_reGRID_1332_Biopsy_2071, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1335_Biopsy_2074, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1331_Biopsy_2069, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1330_Biopsy_2067, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1333_Biopsy_2072, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1342_Biopsy_2082, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_133_Biopsy_268, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1330_Biopsy_2066, Control participants,Ileum NonI tissue

value: Ileum

value: Control


title: MSCCR_reGRID_1327_Biopsy_2062, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1326_Biopsy_2061, CD participants,Rectum I tissue

value: CD


title: MSCCR_reGRID_1323_Biopsy_2058, CD participants,Rectum I tissue

value: Female

value: I


title: MSCCR_reGRID_1326_Biopsy_2060, CD participants,Sigmoid I tissue

value: Severe


title: MSCCR_reGRID_1328_Biopsy_2063, UC participants,Rectum I tissue

value: Active


title: MSCCR_reGRID_1328_Biopsy_2064, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_1329_Biopsy_2065, UC participants,Rectum NonI tissue

value: Male


title: MSCCR_reGRID_1332_Biopsy_2070, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1323_Biopsy_2057, CD participants,Ileum I tissue

value: Moderate


title: MSCCR_reGRID_1320_Biopsy_2056, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_1333_Biopsy_2073, Control participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_132_Biopsy_267, CD participants,Rectum NonI tissue

value: IBD


title: MSCCR_reGRID_132_Biopsy_266, CD participants,RightColon NonI tissue

value: Inactive


title: MSCCR_reGRID_1318_Biopsy_2052, CD participants,Rectum NonI tissue

value: Mild


title: MSCCR_reGRID_1319_Biopsy_2053, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1331_Biopsy_2068, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1317_Biopsy_2050, UC participants,Rectum I tissue


title: MSCCR_reGRID_1317_Biopsy_2049, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_132_Biopsy_265, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1318_Biopsy_2051, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1319_Biopsy_2054, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_1316_Biopsy_2047, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_133_Biopsy_269, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1315_Biopsy_2045, UC participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1317_Biopsy_2048, UC participants,RightColon I tissue


title: MSCCR_reGRID_1314_Biopsy_2043, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1326_Biopsy_2059, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_1311_Biopsy_2042, CD participants,Rectum I tissue

value: Female


title: MSCCR_reGRID_1316_Biopsy_2046, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_1311_Biopsy_2041, CD participants,Transverse I tissue

value: Transverse

value: I

value: Severe


title: MSCCR_reGRID_1309_Biopsy_2040, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_131_Biopsy_263, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1305_Biopsy_2039, CD participants,RightColon NonI tissue

value: Male

value: RightColon


title: MSCCR_reGRID_1305_Biopsy_2038, CD participants,Rectum I tissue


title: MSCCR_reGRID_131_Biopsy_264, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_1304_Biopsy_2037, CD participants,Rectum I tissue


title: MSCCR_reGRID_1303_Biopsy_2036, UC participants,Rectum NonI tissue

value: NonI

value: Moderate


title: MSCCR_reGRID_1319_Biopsy_2055, CD participants,Ileum NonI tissue

value: IBD

value: Inactive


title: MSCCR_reGRID_1302_Biopsy_2035, CD participants,Rectum NonI tissue

value: Active


title: MSCCR_reGRID_1302_Biopsy_2034, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_1302_Biopsy_2033, CD participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_1300_Biopsy_2032, CD participants,Rectum I tissue


title: MSCCR_reGRID_1300_Biopsy_2031, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_130_Biopsy_262, CD participants,LeftColon NonI tissue

value: LeftColon

value: Mild


title: MSCCR_reGRID_130_Biopsy_261, CD participants,RightColon NonI tissue

value: Female

value: CD


title: MSCCR_reGRID_13_Biopsy_27, CD participants,LeftColon I tissue


title: MSCCR_reGRID_1314_Biopsy_2044, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_13_Biopsy_26, CD participants,RightColon I tissue

value: I


title: MSCCR_reGRID_13_Biopsy_25, CD participants,Ileum I tissue

value: Severe


title: MSCCR_reGRID_1299_Biopsy_2030, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_130_Biopsy_260, CD participants,Ileum I tissue


title: MSCCR_reGRID_1299_Biopsy_2029, CD participants,Ileum I tissue


title: MSCCR_reGRID_1299_Biopsy_2028, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1293_Biopsy_2026, UC participants,Rectum I tissue


title: MSCCR_reGRID_1292_Biopsy_2024, CD participants,Ileum I tissue

value: Male


title: MSCCR_reGRID_1291_Biopsy_2022, CD participants,Ileum I tissue


title: MSCCR_reGRID_1291_Biopsy_2021, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1293_Biopsy_2027, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1290_Biopsy_2020, UC participants,Rectum I tissue


title: MSCCR_reGRID_1290_Biopsy_2018, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1290_Biopsy_2019, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_129_Biopsy_259, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_128_Biopsy_256, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_128_Biopsy_255, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_129_Biopsy_258, CD participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_1258_Biopsy_2016, CD participants,Ileum I tissue


title: MSCCR_reGRID_127_Biopsy_253, CD participants,Rectum I tissue


title: MSCCR_reGRID_127_Biopsy_252, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_125_Biopsy_250, UC participants,Rectum I tissue

value: UC


title: MSCCR_reGRID_127_Biopsy_254, CD participants,Cecum I tissue


title: MSCCR_reGRID_1235_Biopsy_2013, UC participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_126_Biopsy_251, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1258_Biopsy_2017, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1236_Biopsy_2015, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_1236_Biopsy_2014, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1292_Biopsy_2025, CD participants,Rectum NonI tissue

value: IBD


title: MSCCR_reGRID_1233_Biopsy_2012, CD participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_123_Biopsy_249, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_123_Biopsy_247, CD participants,Ileum I tissue


title: MSCCR_reGRID_1292_Biopsy_2023, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_1221_Biopsy_2010, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1233_Biopsy_2011, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_122_Biopsy_246, CD participants,Rectum NonI tissue

value: Moderate


title: MSCCR_reGRID_122_Biopsy_245, CD participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_123_Biopsy_248, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_129_Biopsy_257, CD participants,Ileum NonI tissue

value: Ileum

value: Active


title: MSCCR_reGRID_1214_Biopsy_2008, CD participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_1214_Biopsy_2007, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_1207_Biopsy_2004, CD participants,Sigmoid I tissue

value: Mild


title: MSCCR_reGRID_1207_Biopsy_2005, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1214_Biopsy_2009, CD participants,Rectum I tissue

value: Rectum

value: I


title: MSCCR_reGRID_1207_Biopsy_2003, CD participants,Sigmoid NonI tissue

value: Male


title: MSCCR_reGRID_1206_Biopsy_2002, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1205_Biopsy_2001, UC participants,Rectum I tissue

value: UC


title: MSCCR_reGRID_1208_Biopsy_2006, CD participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_1205_Biopsy_2000, UC participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_1203_Biopsy_1997, CD participants,Ileum I tissue

value: IBD

value: Severe


title: MSCCR_reGRID_1204_Biopsy_1998, UC participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_1197_Biopsy_1992, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1201_Biopsy_1994, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_12_Biopsy_22, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_12_Biopsy_24, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1193_Biopsy_1988, UC participants,Ileum NonI tissue

value: Moderate


title: MSCCR_reGRID_1192_Biopsy_1987, CD participants,Rectum I tissue


title: MSCCR_reGRID_1205_Biopsy_1999, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1202_Biopsy_1995, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1203_Biopsy_1996, CD participants,Rectum I tissue


title: MSCCR_reGRID_1195_Biopsy_1991, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_12_Biopsy_23, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1201_Biopsy_1993, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1193_Biopsy_1989, UC participants,Rectum I tissue


title: MSCCR_reGRID_1195_Biopsy_1990, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1192_Biopsy_1986, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_119_Biopsy_244, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1187_Biopsy_1984, CD participants,Ileum I tissue


title: MSCCR_reGRID_1192_Biopsy_1985, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1187_Biopsy_1983, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1186_Biopsy_1981, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1187_Biopsy_1982, CD participants,RightColon I tissue

value: RightColon


title: MSCCR_reGRID_1186_Biopsy_1980, CD participants,Ileum I tissue


title: MSCCR_reGRID_1185_Biopsy_1978, UC participants,Rectum I tissue

value: Female


title: MSCCR_reGRID_1184_Biopsy_1977, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1184_Biopsy_1976, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1185_Biopsy_1979, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_1183_Biopsy_1975, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1180_Biopsy_1974, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_1177_Biopsy_1972, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_1180_Biopsy_1973, CD participants,Ileum I tissue


title: MSCCR_reGRID_1177_Biopsy_1971, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1177_Biopsy_1970, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_118_Biopsy_241, CD participants,Ileum NonI tissue

value: Mild


title: MSCCR_reGRID_118_Biopsy_243, CD participants,Sigmoid NonI tissue

value: Male


title: MSCCR_reGRID_1176_Biopsy_1969, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1174_Biopsy_1967, UC participants,LeftColon I tissue

value: LeftColon

value: I

value: Active


title: MSCCR_reGRID_117_Biopsy_239, UC participants,LeftColon NonI tissue

value: UC

value: NonI


title: MSCCR_reGRID_1175_Biopsy_1968, UC participants,Rectum NonI tissue

value: IBD


title: MSCCR_reGRID_1169_Biopsy_1962, CD participants,Cecum I tissue

value: Cecum

value: Severe


title: MSCCR_reGRID_1174_Biopsy_1966, UC participants,Sigmoid I tissue

value: Sigmoid

value: Inactive


title: MSCCR_reGRID_1169_Biopsy_1961, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_1168_Biopsy_1960, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1171_Biopsy_1964, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1169_Biopsy_1963, CD participants,Rectum I tissue


title: MSCCR_reGRID_1174_Biopsy_1965, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_1167_Biopsy_1957, CD participants,Rectum NonI tissue

value: Moderate


title: MSCCR_reGRID_1166_Biopsy_1956, Control participants,Rectum NonI tissue

value: Female

value: Control


title: MSCCR_reGRID_1165_Biopsy_1954, CD participants,Rectum I tissue

value: CD


title: MSCCR_reGRID_1168_Biopsy_1959, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_1167_Biopsy_1958, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_1165_Biopsy_1953, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1164_Biopsy_1951, UC participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1164_Biopsy_1952, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_118_Biopsy_242, CD participants,Transverse NonI tissue

value: Male

value: Transverse

value: Mild


title: MSCCR_reGRID_1161_Biopsy_1950, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_117_Biopsy_240, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_116_Biopsy_235, CD participants,Ileum I tissue

value: I


title: MSCCR_reGRID_116_Biopsy_236, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_116_Biopsy_237, CD participants,Sigmoid NonI tissue

value: NonI


title: MSCCR_reGRID_117_Biopsy_238, UC participants,RightColon NonI tissue

value: UC

value: IBD


title: MSCCR_reGRID_1156_Biopsy_1946, UC participants,Rectum I tissue


title: MSCCR_reGRID_1157_Biopsy_1948, Control participants,RightColon NonI tissue


title: MSCCR_reGRID_1156_Biopsy_1945, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1154_Biopsy_1942, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1152_Biopsy_1940, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1151_Biopsy_1938, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1154_Biopsy_1943, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1156_Biopsy_1944, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_1166_Biopsy_1955, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1157_Biopsy_1947, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1152_Biopsy_1941, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_115_Biopsy_234, UC participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_1150_Biopsy_1936, UC participants,Ileum NonI tissue

value: Moderate


title: MSCCR_reGRID_115_Biopsy_232, UC participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_1150_Biopsy_1937, UC participants,Rectum I tissue


title: MSCCR_reGRID_1149_Biopsy_1935, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_1148_Biopsy_1930, CD participants,RightColon I tissue


title: MSCCR_reGRID_1148_Biopsy_1929, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1145_Biopsy_1928, UC participants,Cecum NonI tissue

value: Female

value: Active


title: MSCCR_reGRID_1159_Biopsy_1949, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1151_Biopsy_1939, Control participants,Ileum NonI tissue

value: Control


title: MSCCR_reGRID_1139_Biopsy_1924, UC participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1138_Biopsy_1922, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1142_Biopsy_1926, CD participants,Rectum I tissue

value: Rectum

value: CD


title: MSCCR_reGRID_115_Biopsy_233, UC participants,RightColon I tissue

value: I


title: MSCCR_reGRID_1138_Biopsy_1923, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1137_Biopsy_1921, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1136_Biopsy_1920, UC participants,Rectum I tissue


title: MSCCR_reGRID_1135_Biopsy_1918, CD participants,Rectum NonI tissue

value: Mild


title: MSCCR_reGRID_1136_Biopsy_1919, UC participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_113_Biopsy_229, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_1129_Biopsy_1914, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1134_Biopsy_1916, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1142_Biopsy_1925, CD participants,Cecum NonI tissue

value: IBD


title: MSCCR_reGRID_113_Biopsy_231, CD participants,Ileum I tissue


title: MSCCR_reGRID_1149_Biopsy_1933, UC participants,Cecum I tissue

value: Cecum

value: UC


title: MSCCR_reGRID_1134_Biopsy_1917, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1127_Biopsy_1912, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1127_Biopsy_1911, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1149_Biopsy_1934, UC participants,Rectum I tissue

value: Inactive


title: MSCCR_reGRID_1128_Biopsy_1913, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1148_Biopsy_1931, CD participants,Rectum I tissue


title: MSCCR_reGRID_1148_Biopsy_1932, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1126_Biopsy_1910, UC participants,Rectum I tissue


title: MSCCR_reGRID_1126_Biopsy_1909, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_1145_Biopsy_1927, UC participants,Rectum I tissue

value: Moderate


title: MSCCR_reGRID_1125_Biopsy_1908, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1125_Biopsy_1907, CD participants,Ileum I tissue


title: MSCCR_reGRID_1124_Biopsy_1906, CD participants,Rectum I tissue

value: Female


title: MSCCR_reGRID_1123_Biopsy_1903, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1123_Biopsy_1904, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_113_Biopsy_230, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1129_Biopsy_1915, Control participants,Transverse NonI tissue


title: MSCCR_reGRID_1124_Biopsy_1905, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1122_Biopsy_1902, Control participants,Cecum NonI tissue

value: Control


title: MSCCR_reGRID_1120_Biopsy_1899, Control participants,Cecum NonI tissue

value: Male


title: MSCCR_reGRID_1119_Biopsy_1897, UC participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_112_Biopsy_226, CD participants,RightColon NonI tissue

value: CD


title: MSCCR_reGRID_1119_Biopsy_1898, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_112_Biopsy_228, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1117_Biopsy_1895, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1114_Biopsy_1890, UC participants,Sigmoid I tissue

value: Sigmoid

value: I


title: MSCCR_reGRID_1115_Biopsy_1893, Control participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_112_Biopsy_227, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1114_Biopsy_1891, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1115_Biopsy_1894, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1113_Biopsy_1889, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1117_Biopsy_1896, CD participants,Rectum I tissue


title: MSCCR_reGRID_1114_Biopsy_1892, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1112_Biopsy_1887, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1111_Biopsy_1885, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1112_Biopsy_1886, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1113_Biopsy_1888, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1111_Biopsy_1884, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1110_Biopsy_1883, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_111_Biopsy_224, CD participants,RightColon NonI tissue

value: RightColon

value: Mild


title: MSCCR_reGRID_1122_Biopsy_1901, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_111_Biopsy_225, CD participants,Ileum NonI tissue

value: IBD


title: MSCCR_reGRID_111_Biopsy_223, CD participants,Rectum I tissue


title: MSCCR_reGRID_1120_Biopsy_1900, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1109_Biopsy_1881, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1108_Biopsy_1879, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1108_Biopsy_1880, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1109_Biopsy_1882, CD participants,Ileum I tissue


title: MSCCR_reGRID_1104_Biopsy_1876, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1104_Biopsy_1875, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1102_Biopsy_1873, UC participants,Ileum NonI tissue

value: UC


title: MSCCR_reGRID_1103_Biopsy_1874, UC participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_1105_Biopsy_1878, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1102_Biopsy_1872, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1100_Biopsy_1868, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_1100_Biopsy_1869, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_110_Biopsy_222, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_1100_Biopsy_1870, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_110_Biopsy_220, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1102_Biopsy_1871, UC participants,Cecum I tissue


title: MSCCR_reGRID_110_Biopsy_221, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_11_Biopsy_21, UC participants,Rectum I tissue


title: MSCCR_reGRID_1099_Biopsy_1867, CD participants,Rectum I tissue


title: MSCCR_reGRID_1099_Biopsy_1866, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1098_Biopsy_1865, UC participants,Transverse NonI tissue

value: Transverse

value: Active


title: MSCCR_reGRID_1098_Biopsy_1864, UC participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_1096_Biopsy_1863, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1096_Biopsy_1862, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1094_Biopsy_1861, Control participants,Cecum NonI tissue

value: Control


title: MSCCR_reGRID_1093_Biopsy_1859, Control participants,Rectum NonI tissue

value: Male


title: MSCCR_reGRID_1094_Biopsy_1860, Control participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1091_Biopsy_1855, UC participants,Transverse I tissue


title: MSCCR_reGRID_1092_Biopsy_1858, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1091_Biopsy_1856, UC participants,Rectum I tissue


title: MSCCR_reGRID_1092_Biopsy_1857, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1105_Biopsy_1877, CD participants,Cecum I tissue

value: CD


title: MSCCR_reGRID_109_Biopsy_219, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1091_Biopsy_1854, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1090_Biopsy_1852, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_109_Biopsy_218, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_1089_Biopsy_1850, CD participants,Rectum I tissue

value: I

value: Moderate


title: MSCCR_reGRID_1089_Biopsy_1851, CD participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_1088_Biopsy_1849, UC participants,Rectum I tissue

value: Severe


title: MSCCR_reGRID_1088_Biopsy_1848, UC participants,Sigmoid I tissue

value: Sigmoid

value: IBD


title: MSCCR_reGRID_1086_Biopsy_1845, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1085_Biopsy_1843, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1087_Biopsy_1846, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1086_Biopsy_1844, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1083_Biopsy_1839, CD participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_1085_Biopsy_1842, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1082_Biopsy_1837, CD participants,Rectum NonI tissue

value: Mild


title: MSCCR_reGRID_1082_Biopsy_1836, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_1083_Biopsy_1838, CD participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1087_Biopsy_1847, Control participants,Cecum NonI tissue

value: Female


title: MSCCR_reGRID_1084_Biopsy_1841, CD participants,Rectum NonI tissue

value: Active


title: MSCCR_reGRID_1082_Biopsy_1835, CD participants,Cecum I tissue


title: MSCCR_reGRID_1081_Biopsy_1834, Control participants,Ileum NonI tissue

value: Ileum

value: Control


title: MSCCR_reGRID_1081_Biopsy_1833, Control participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1080_Biopsy_1831, Control participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1080_Biopsy_1832, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1090_Biopsy_1853, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1079_Biopsy_1829, UC participants,Sigmoid I tissue

value: UC


title: MSCCR_reGRID_1079_Biopsy_1830, UC participants,Rectum I tissue

value: I


title: MSCCR_reGRID_1078_Biopsy_1828, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_109_Biopsy_217, CD participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_1077_Biopsy_1826, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_418_Biopsy_844, CD participants,LeftColon I tissue

value: LeftColon

value: Moderate


title: MSCCR_reGRID_1084_Biopsy_1840, CD participants,Cecum I tissue

value: IBD


title: MSCCR_reGRID_418_Biopsy_842, CD participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_418_Biopsy_843, CD participants,RightColon I tissue


title: MSCCR_reGRID_416_Biopsy_841, UC participants,RightColon I tissue

value: Mild


title: MSCCR_reGRID_416_Biopsy_839, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_414_Biopsy_837, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_413_Biopsy_836, CD participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_414_Biopsy_838, UC participants,Rectum I tissue


title: MSCCR_reGRID_413_Biopsy_835, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_413_Biopsy_834, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_412_Biopsy_833, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_412_Biopsy_832, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_412_Biopsy_831, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_411_Biopsy_829, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_411_Biopsy_830, UC participants,LeftColon I tissue


title: MSCCR_reGRID_411_Biopsy_828, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_410_Biopsy_827, CD participants,Rectum I tissue

value: Rectum

value: Active

value: Severe


title: MSCCR_reGRID_409_Biopsy_824, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_410_Biopsy_826, CD participants,LeftColon I tissue

value: CD


title: MSCCR_reGRID_410_Biopsy_825, CD participants,RightColon NonI tissue

value: NonI


title: MSCCR_reGRID_408_Biopsy_823, CD participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_408_Biopsy_821, CD participants,Cecum I tissue

value: Moderate


title: MSCCR_reGRID_407_Biopsy_819, UC participants,RightColon I tissue

value: Male

value: UC

value: IBD


title: MSCCR_reGRID_408_Biopsy_822, CD participants,RightColon NonI tissue

value: Inactive


title: MSCCR_reGRID_407_Biopsy_820, UC participants,LeftColon I tissue


title: MSCCR_reGRID_1078_Biopsy_1827, CD participants,Ileum I tissue

value: Mild


title: MSCCR_reGRID_406_Biopsy_817, UC participants,RightColon I tissue


title: MSCCR_reGRID_407_Biopsy_818, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_416_Biopsy_840, UC participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_406_Biopsy_816, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_406_Biopsy_815, UC participants,LeftColon I tissue


title: MSCCR_reGRID_405_Biopsy_813, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_405_Biopsy_814, CD participants,Cecum I tissue


title: MSCCR_reGRID_405_Biopsy_812, CD participants,Rectum I tissue


title: MSCCR_reGRID_403_Biopsy_809, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_402_Biopsy_808, UC participants,LeftColon NonI tissue

value: Female


title: MSCCR_reGRID_402_Biopsy_807, UC participants,RightColon I tissue

value: RightColon


title: MSCCR_reGRID_401_Biopsy_805, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_401_Biopsy_804, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_401_Biopsy_803, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_4_Biopsy_9, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_4_Biopsy_8, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_41_Biopsy_85, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_4_Biopsy_7, CD participants,Ileum I tissue


title: MSCCR_reGRID_399_Biopsy_801, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_399_Biopsy_800, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_397_Biopsy_796, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_398_Biopsy_798, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_398_Biopsy_799, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_398_Biopsy_797, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_397_Biopsy_795, CD participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_397_Biopsy_794, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_395_Biopsy_792, UC participants,RightColon I tissue

value: Active


title: MSCCR_reGRID_395_Biopsy_793, UC participants,LeftColon I tissue

value: Severe


title: MSCCR_reGRID_395_Biopsy_791, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_393_Biopsy_789, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_393_Biopsy_788, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_403_Biopsy_811, CD participants,Cecum NonI tissue

value: NonI


title: MSCCR_reGRID_392_Biopsy_786, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_402_Biopsy_806, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_403_Biopsy_810, CD participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_391_Biopsy_784, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_390_Biopsy_783, UC participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_393_Biopsy_790, CD participants,Transverse I tissue

value: Male


title: MSCCR_reGRID_39_Biopsy_84, UC participants,RightColon NonI tissue

value: UC

value: IBD


title: MSCCR_reGRID_390_Biopsy_781, UC participants,Ileum NonI tissue

value: Inactive

value: Mild


title: MSCCR_reGRID_399_Biopsy_802, UC participants,Rectum I tissue


title: MSCCR_reGRID_390_Biopsy_782, UC participants,RightColon I tissue

value: Female


title: MSCCR_reGRID_391_Biopsy_785, UC participants,LeftColon I tissue


title: MSCCR_reGRID_389_Biopsy_780, UC participants,RightColon NonI tissue

value: RightColon

value: Moderate


title: MSCCR_reGRID_39_Biopsy_82, UC participants,Transverse NonI tissue


title: MSCCR_reGRID_389_Biopsy_779, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_388_Biopsy_778, UC participants,LeftColon I tissue


title: MSCCR_reGRID_388_Biopsy_777, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_39_Biopsy_83, UC participants,Rectum I tissue


title: MSCCR_reGRID_388_Biopsy_776, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_387_Biopsy_775, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_386_Biopsy_771, CD participants,Rectum I tissue


title: MSCCR_reGRID_387_Biopsy_773, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_392_Biopsy_787, CD participants,Ileum I tissue

value: Active


title: MSCCR_reGRID_385_Biopsy_768, CD participants,Ileum I tissue


title: MSCCR_reGRID_385_Biopsy_770, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_386_Biopsy_772, CD participants,RightColon I tissue


title: MSCCR_reGRID_387_Biopsy_774, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_384_Biopsy_767, CD participants,LeftColon I tissue

value: Severe


title: MSCCR_reGRID_384_Biopsy_766, CD participants,Transverse I tissue

value: Transverse

value: CD


title: MSCCR_reGRID_384_Biopsy_765, CD participants,RightColon I tissue

value: I


title: MSCCR_reGRID_383_Biopsy_762, UC participants,RightColon NonI tissue

value: NonI


title: MSCCR_reGRID_382_Biopsy_761, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_383_Biopsy_763, UC participants,Transverse NonI tissue


title: MSCCR_reGRID_382_Biopsy_760, UC participants,Rectum I tissue


title: MSCCR_reGRID_382_Biopsy_759, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_381_Biopsy_758, CD participants,RightColon I tissue


title: MSCCR_reGRID_381_Biopsy_757, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_38_Biopsy_81, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_379_Biopsy_752, CD participants,Rectum I tissue


title: MSCCR_reGRID_381_Biopsy_756, CD participants,Ileum I tissue


title: MSCCR_reGRID_379_Biopsy_751, CD participants,LeftColon I tissue


title: MSCCR_reGRID_380_Biopsy_755, CD participants,Sigmoid NonI tissue

value: Male

value: Sigmoid


title: MSCCR_reGRID_385_Biopsy_769, CD participants,RightColon I tissue

value: IBD


title: MSCCR_reGRID_380_Biopsy_753, CD participants,RightColon I tissue

value: Inactive


title: MSCCR_reGRID_379_Biopsy_750, CD participants,RightColon I tissue


title: MSCCR_reGRID_378_Biopsy_748, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_377_Biopsy_746, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_378_Biopsy_747, CD participants,LeftColon I tissue


title: MSCCR_reGRID_377_Biopsy_745, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_383_Biopsy_764, UC participants,Sigmoid NonI tissue

value: UC


title: MSCCR_reGRID_376_Biopsy_741, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_377_Biopsy_744, CD participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_376_Biopsy_742, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_378_Biopsy_749, CD participants,RightColon I tissue

value: RightColon


title: MSCCR_reGRID_375_Biopsy_740, CD participants,RightColon NonI tissue

value: Moderate


title: MSCCR_reGRID_376_Biopsy_743, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_374_Biopsy_738, UC participants,Sigmoid I tissue


title: MSCCR_reGRID_372_Biopsy_734, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_371_Biopsy_731, UC participants,LeftColon I tissue

value: Mild


title: MSCCR_reGRID_373_Biopsy_735, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_373_Biopsy_737, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_372_Biopsy_733, UC participants,LeftColon I tissue


title: MSCCR_reGRID_373_Biopsy_736, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_37_Biopsy_80, CD participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_370_Biopsy_727, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_372_Biopsy_732, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_375_Biopsy_739, CD participants,Ileum I tissue


title: MSCCR_reGRID_368_Biopsy_724, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_37_Biopsy_79, CD participants,Sigmoid NonI tissue

value: CD


title: MSCCR_reGRID_369_Biopsy_725, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_371_Biopsy_730, UC participants,Transverse I tissue

value: I


title: MSCCR_reGRID_370_Biopsy_728, UC participants,LeftColon I tissue


title: MSCCR_reGRID_371_Biopsy_729, UC participants,RightColon I tissue


title: MSCCR_reGRID_370_Biopsy_726, UC participants,Rectum I tissue


title: MSCCR_reGRID_367_Biopsy_721, CD participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_37_Biopsy_78, CD participants,Ileum I tissue


title: MSCCR_reGRID_368_Biopsy_722, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_380_Biopsy_754, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_366_Biopsy_717, CD participants,Rectum I tissue


title: MSCCR_reGRID_367_Biopsy_719, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_366_Biopsy_718, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_368_Biopsy_723, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_365_Biopsy_715, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_367_Biopsy_720, CD participants,Transverse NonI tissue

value: Male


title: MSCCR_reGRID_366_Biopsy_716, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_365_Biopsy_714, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_364_Biopsy_713, CD participants,LeftColon I tissue

value: Severe


title: MSCCR_reGRID_364_Biopsy_712, CD participants,RightColon I tissue

value: IBD


title: MSCCR_reGRID_364_Biopsy_711, CD participants,Ileum I tissue

value: Inactive


title: MSCCR_reGRID_363_Biopsy_710, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_362_Biopsy_706, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_363_Biopsy_709, UC participants,RightColon NonI tissue

value: Female


title: MSCCR_reGRID_362_Biopsy_705, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_362_Biopsy_707, CD participants,Rectum I tissue


title: MSCCR_reGRID_361_Biopsy_703, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_361_Biopsy_704, CD participants,Ileum I tissue


title: MSCCR_reGRID_36_Biopsy_77, UC participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_359_Biopsy_700, UC participants,Sigmoid I tissue

value: Active

value: Moderate


title: MSCCR_reGRID_36_Biopsy_76, UC participants,RightColon I tissue

value: RightColon

value: Mild


title: MSCCR_reGRID_355_Biopsy_696, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_359_Biopsy_699, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_355_Biopsy_695, CD participants,LeftColon I tissue


title: MSCCR_reGRID_358_Biopsy_698, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_358_Biopsy_697, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_353_Biopsy_691, CD participants,Rectum I tissue

value: CD


title: MSCCR_reGRID_361_Biopsy_702, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_354_Biopsy_693, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_355_Biopsy_694, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_35_Biopsy_75, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_351_Biopsy_687, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_35_Biopsy_74, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_353_Biopsy_690, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_351_Biopsy_686, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_354_Biopsy_692, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_351_Biopsy_688, UC participants,Rectum I tissue


title: MSCCR_reGRID_363_Biopsy_708, UC participants,LeftColon NonI tissue

value: LeftColon

value: NonI


title: MSCCR_reGRID_35_Biopsy_73, UC participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_348_Biopsy_685, CD participants,Sigmoid I tissue

value: IBD


title: MSCCR_reGRID_359_Biopsy_701, UC participants,Transverse NonI tissue


title: MSCCR_reGRID_348_Biopsy_684, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_348_Biopsy_683, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_352_Biopsy_689, CD participants,LeftColon I tissue

value: Male


title: MSCCR_reGRID_347_Biopsy_682, Control participants,LeftColon NonI tissue

value: Control


title: MSCCR_reGRID_347_Biopsy_681, Control participants,RightColon NonI tissue


title: MSCCR_reGRID_346_Biopsy_679, UC participants,Sigmoid NonI tissue

value: Female

value: UC

value: Inactive


title: MSCCR_reGRID_346_Biopsy_678, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_345_Biopsy_675, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_345_Biopsy_676, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_344_Biopsy_674, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_343_Biopsy_671, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_344_Biopsy_673, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_343_Biopsy_670, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_342_Biopsy_669, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_342_Biopsy_668, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_341_Biopsy_667, UC participants,LeftColon I tissue

value: Active

value: Severe


title: MSCCR_reGRID_341_Biopsy_665, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_340_Biopsy_664, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_340_Biopsy_663, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_339_Biopsy_662, UC participants,Sigmoid I tissue

value: Mild


title: MSCCR_reGRID_34_Biopsy_72, CD participants,Ileum NonI tissue

value: Ileum

value: CD


title: MSCCR_reGRID_34_Biopsy_71, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_339_Biopsy_661, UC participants,RightColon NonI tissue

value: NonI


title: MSCCR_reGRID_347_Biopsy_680, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_338_Biopsy_658, CD participants,Ileum I tissue


title: MSCCR_reGRID_337_Biopsy_656, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_336_Biopsy_653, CD participants,Ileum I tissue

value: Moderate


title: MSCCR_reGRID_333_Biopsy_652, CD participants,Cecum NonI tissue

value: Cecum

value: IBD


title: MSCCR_reGRID_337_Biopsy_655, CD participants,Rectum I tissue

value: Male


title: MSCCR_reGRID_336_Biopsy_654, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_346_Biopsy_677, UC participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_344_Biopsy_672, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_333_Biopsy_651, CD participants,Cecum I tissue


title: MSCCR_reGRID_330_Biopsy_649, UC participants,Ileum NonI tissue

value: UC


title: MSCCR_reGRID_333_Biopsy_650, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_330_Biopsy_647, UC participants,Transverse I tissue

value: Transverse

value: Inactive


title: MSCCR_reGRID_341_Biopsy_666, UC participants,Rectum NonI tissue

value: Active

value: Severe


title: MSCCR_reGRID_33_Biopsy_69, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_329_Biopsy_646, UC participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_328_Biopsy_644, CD participants,LeftColon I tissue


title: MSCCR_reGRID_339_Biopsy_660, UC participants,Ileum NonI tissue

value: Mild


title: MSCCR_reGRID_324_Biopsy_639, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_321_Biopsy_637, CD participants,Cecum NonI tissue

value: CD


title: MSCCR_reGRID_323_Biopsy_638, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_324_Biopsy_640, CD participants,Cecum NonI tissue

value: NonI


title: MSCCR_reGRID_327_Biopsy_641, CD participants,Ileum I tissue

value: I


title: MSCCR_reGRID_327_Biopsy_642, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_320_Biopsy_635, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_338_Biopsy_659, CD participants,Rectum I tissue


title: MSCCR_reGRID_337_Biopsy_657, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_320_Biopsy_634, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_318_Biopsy_632, UC participants,Rectum I tissue


title: MSCCR_reGRID_32_Biopsy_68, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_321_Biopsy_636, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_317_Biopsy_631, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_320_Biopsy_633, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_317_Biopsy_630, CD participants,Transverse NonI tissue

value: IBD


title: MSCCR_reGRID_33_Biopsy_70, UC participants,RightColon NonI tissue

value: Male

value: Moderate


title: MSCCR_reGRID_317_Biopsy_629, CD participants,Cecum NonI tissue

value: Female

value: Cecum


title: MSCCR_reGRID_328_Biopsy_645, CD participants,Rectum I tissue


title: MSCCR_reGRID_316_Biopsy_627, CD participants,LeftColon NonI tissue

value: Inactive


title: MSCCR_reGRID_330_Biopsy_648, UC participants,LeftColon NonI tissue

value: UC


title: MSCCR_reGRID_315_Biopsy_624, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_328_Biopsy_643, CD participants,Cecum I tissue

value: Active

value: Severe


title: MSCCR_reGRID_316_Biopsy_626, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_315_Biopsy_625, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_314_Biopsy_622, CD participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_312_Biopsy_618, CD participants,Ileum I tissue


title: MSCCR_reGRID_311_Biopsy_616, UC participants,Ileum NonI tissue

value: Mild


title: MSCCR_reGRID_312_Biopsy_620, CD participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_311_Biopsy_617, UC participants,Rectum I tissue


title: MSCCR_reGRID_32_Biopsy_67, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_312_Biopsy_619, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_314_Biopsy_621, CD participants,Transverse I tissue

value: Transverse


title: MSCCR_reGRID_310_Biopsy_615, UC participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_31_Biopsy_66, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_307_Biopsy_613, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_307_Biopsy_614, UC participants,Ileum NonI tissue

value: Ileum

value: IBD


title: MSCCR_reGRID_305_Biopsy_611, UC participants,Sigmoid NonI tissue

value: Male


title: MSCCR_reGRID_31_Biopsy_65, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_316_Biopsy_628, CD participants,Cecum I tissue

value: I

value: Moderate


title: MSCCR_reGRID_306_Biopsy_612, CD participants,Rectum NonI tissue

value: Female

value: Inactive


title: MSCCR_reGRID_305_Biopsy_610, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_305_Biopsy_609, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_303_Biopsy_604, CD participants,RightColon I tissue


title: MSCCR_reGRID_303_Biopsy_605, CD participants,LeftColon I tissue


title: MSCCR_reGRID_304_Biopsy_606, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_314_Biopsy_623, CD participants,RightColon NonI tissue

value: Severe


title: MSCCR_reGRID_303_Biopsy_603, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_304_Biopsy_607, CD participants,Ileum I tissue


title: MSCCR_reGRID_302_Biopsy_600, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_301_Biopsy_599, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_301_Biopsy_598, UC participants,RightColon I tissue


title: MSCCR_reGRID_302_Biopsy_602, UC participants,LeftColon I tissue

value: Mild


title: MSCCR_reGRID_301_Biopsy_597, UC participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_304_Biopsy_608, CD participants,Transverse NonI tissue

value: CD


title: MSCCR_reGRID_3_Biopsy_5, CD participants,Transverse NonI tissue

value: Active


title: MSCCR_reGRID_299_Biopsy_595, CD participants,LeftColon I tissue


title: MSCCR_reGRID_3_Biopsy_4, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_298_Biopsy_592, CD participants,Transverse I tissue

value: Transverse


title: MSCCR_reGRID_299_Biopsy_596, CD participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_299_Biopsy_594, CD participants,RightColon I tissue

value: RightColon


title: MSCCR_reGRID_298_Biopsy_593, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_302_Biopsy_601, UC participants,RightColon I tissue

value: IBD


title: MSCCR_reGRID_295_Biopsy_589, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_298_Biopsy_591, CD participants,RightColon I tissue

value: Male


title: MSCCR_reGRID_295_Biopsy_588, UC participants,Sigmoid I tissue

value: Sigmoid

value: I


title: MSCCR_reGRID_294_Biopsy_587, UC participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_297_Biopsy_590, UC participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_293_Biopsy_586, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_292_Biopsy_585, UC participants,Sigmoid NonI tissue

value: UC


title: MSCCR_reGRID_292_Biopsy_584, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_291_Biopsy_581, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_290_Biopsy_580, CD participants,Rectum I tissue


title: MSCCR_reGRID_292_Biopsy_583, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_29_Biopsy_63, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_289_Biopsy_577, CD participants,Rectum NonI tissue

value: Moderate


title: MSCCR_reGRID_287_Biopsy_576, CD participants,LeftColon NonI tissue

value: LeftColon

value: Severe


title: MSCCR_reGRID_29_Biopsy_64, CD participants,LeftColon NonI tissue

value: Mild


title: MSCCR_reGRID_290_Biopsy_579, CD participants,Ileum I tissue

value: CD


title: MSCCR_reGRID_291_Biopsy_582, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_287_Biopsy_575, CD participants,Ileum I tissue

value: Active


title: MSCCR_reGRID_3_Biopsy_6, CD participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_285_Biopsy_571, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_29_Biopsy_62, CD participants,Ileum I tissue


title: MSCCR_reGRID_286_Biopsy_574, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_286_Biopsy_573, CD participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_282_Biopsy_566, CD participants,Rectum NonI tissue

value: IBD


title: MSCCR_reGRID_286_Biopsy_572, CD participants,Ileum I tissue

value: Male

value: Ileum


title: MSCCR_reGRID_283_Biopsy_567, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_284_Biopsy_570, CD participants,Sigmoid I tissue

value: Sigmoid

value: I


title: MSCCR_reGRID_281_Biopsy_561, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_28_Biopsy_61, CD participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_279_Biopsy_557, UC participants,Rectum I tissue

value: Female

value: UC


title: MSCCR_reGRID_283_Biopsy_569, UC participants,Rectum I tissue


title: MSCCR_reGRID_283_Biopsy_568, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_279_Biopsy_555, UC participants,RightColon NonI tissue

value: Mild


title: MSCCR_reGRID_282_Biopsy_564, CD participants,Ileum I tissue

value: CD


title: MSCCR_reGRID_278_Biopsy_552, CD participants,Rectum NonI tissue

value: Rectum

value: Severe


title: MSCCR_reGRID_280_Biopsy_560, CD participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_281_Biopsy_562, CD participants,Cecum I tissue

value: Active


title: MSCCR_reGRID_280_Biopsy_559, CD participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_280_Biopsy_558, CD participants,Transverse NonI tissue

value: Transverse

value: IBD


title: MSCCR_reGRID_282_Biopsy_565, CD participants,Cecum NonI tissue

value: Male


title: MSCCR_reGRID_276_Biopsy_547, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_289_Biopsy_578, CD participants,Cecum I tissue

value: Moderate


title: MSCCR_reGRID_28_Biopsy_60, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_279_Biopsy_556, UC participants,LeftColon I tissue

value: I

value: Inactive


title: MSCCR_reGRID_278_Biopsy_554, CD participants,LeftColon I tissue


title: MSCCR_reGRID_274_Biopsy_542, CD participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_278_Biopsy_553, CD participants,Cecum I tissue


title: MSCCR_reGRID_274_Biopsy_541, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_277_Biopsy_551, CD participants,Cecum NonI tissue

value: Female


title: MSCCR_reGRID_273_Biopsy_539, UC participants,LeftColon I tissue

value: LeftColon

value: UC

value: Mild


title: MSCCR_reGRID_277_Biopsy_549, CD participants,Rectum NonI tissue

value: Rectum

value: CD


title: MSCCR_reGRID_272_Biopsy_536, UC participants,Rectum I tissue


title: MSCCR_reGRID_281_Biopsy_563, CD participants,Rectum I tissue

value: Active

value: Severe


title: MSCCR_reGRID_276_Biopsy_546, CD participants,Ileum I tissue


title: MSCCR_reGRID_277_Biopsy_550, CD participants,Transverse NonI tissue

value: Transverse

value: NonI


title: MSCCR_reGRID_272_Biopsy_534, UC participants,Cecum NonI tissue

value: Male

value: Cecum

value: IBD


title: MSCCR_reGRID_270_Biopsy_533, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_27_Biopsy_59, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_27_Biopsy_58, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_273_Biopsy_538, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_27_Biopsy_57, CD participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_273_Biopsy_537, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_274_Biopsy_540, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_268_Biopsy_530, CD participants,RightColon I tissue

value: I

value: Moderate


title: MSCCR_reGRID_275_Biopsy_544, UC participants,RightColon NonI tissue

value: Female


title: MSCCR_reGRID_276_Biopsy_548, CD participants,Rectum I tissue


title: MSCCR_reGRID_269_Biopsy_531, CD participants,Ileum I tissue


title: MSCCR_reGRID_272_Biopsy_535, UC participants,LeftColon I tissue

value: LeftColon

value: UC


title: MSCCR_reGRID_268_Biopsy_528, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_269_Biopsy_532, CD participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_267_Biopsy_527, CD participants,RightColon NonI tissue

value: CD

value: Mild


title: MSCCR_reGRID_267_Biopsy_526, CD participants,Ileum I tissue


title: MSCCR_reGRID_275_Biopsy_545, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_275_Biopsy_543, UC participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_266_Biopsy_522, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_268_Biopsy_529, CD participants,Cecum I tissue


title: MSCCR_reGRID_265_Biopsy_521, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_267_Biopsy_525, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_265_Biopsy_520, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_265_Biopsy_519, CD participants,Ileum I tissue


title: MSCCR_reGRID_263_Biopsy_516, CD participants,Ileum I tissue

value: Severe


title: MSCCR_reGRID_262_Biopsy_515, CD participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_263_Biopsy_517, CD participants,RightColon I tissue

value: Male


title: MSCCR_reGRID_263_Biopsy_518, CD participants,Rectum I tissue


title: MSCCR_reGRID_261_Biopsy_512, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_261_Biopsy_513, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_261_Biopsy_514, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_259_Biopsy_509, UC participants,RightColon I tissue


title: MSCCR_reGRID_258_Biopsy_507, CD participants,Ileum I tissue


title: MSCCR_reGRID_258_Biopsy_506, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_266_Biopsy_524, CD participants,Rectum I tissue

value: IBD


title: MSCCR_reGRID_259_Biopsy_511, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_257_Biopsy_505, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_257_Biopsy_503, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_256_Biopsy_502, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_256_Biopsy_500, UC participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_257_Biopsy_504, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_254_Biopsy_498, UC participants,LeftColon I tissue

value: I


title: MSCCR_reGRID_256_Biopsy_501, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_266_Biopsy_523, CD participants,Sigmoid NonI tissue

value: Moderate


title: MSCCR_reGRID_255_Biopsy_499, UC participants,RightColon NonI tissue

value: Female

value: RightColon


title: MSCCR_reGRID_251_Biopsy_492, CD participants,RightColon I tissue


title: MSCCR_reGRID_254_Biopsy_497, UC participants,RightColon NonI tissue

value: UC


title: MSCCR_reGRID_254_Biopsy_496, UC participants,Transverse I tissue


title: MSCCR_reGRID_252_Biopsy_495, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_252_Biopsy_493, UC participants,Transverse NonI tissue


title: MSCCR_reGRID_251_Biopsy_491, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_251_Biopsy_490, CD participants,Rectum NonI tissue

value: Mild


title: MSCCR_reGRID_250_Biopsy_489, CD participants,RightColon NonI tissue

value: Active


title: MSCCR_reGRID_25_Biopsy_56, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_259_Biopsy_510, UC participants,Transverse I tissue


title: MSCCR_reGRID_258_Biopsy_508, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_25_Biopsy_54, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_25_Biopsy_55, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_247_Biopsy_485, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_246_Biopsy_482, CD participants,RightColon NonI tissue

value: NonI


title: MSCCR_reGRID_248_Biopsy_487, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_246_Biopsy_483, CD participants,Ileum I tissue


title: MSCCR_reGRID_248_Biopsy_486, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_245_Biopsy_480, CD participants,Ileum I tissue

value: Male


title: MSCCR_reGRID_252_Biopsy_494, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_243_Biopsy_479, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_243_Biopsy_477, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_242_Biopsy_475, CD participants,RightColon NonI tissue

value: IBD


title: MSCCR_reGRID_243_Biopsy_478, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_241_Biopsy_473, UC participants,Rectum I tissue


title: MSCCR_reGRID_242_Biopsy_476, CD participants,LeftColon I tissue


title: MSCCR_reGRID_241_Biopsy_471, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_250_Biopsy_488, CD participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_245_Biopsy_481, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_241_Biopsy_472, UC participants,Transverse NonI tissue


title: MSCCR_reGRID_24_Biopsy_53, UC participants,Sigmoid I tissue

value: Sigmoid

value: Severe


title: MSCCR_reGRID_242_Biopsy_474, CD participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_240_Biopsy_470, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_239_Biopsy_467, UC participants,Sigmoid I tissue

value: I


title: MSCCR_reGRID_240_Biopsy_469, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_24_Biopsy_52, UC participants,Rectum I tissue

value: Female


title: MSCCR_reGRID_238_Biopsy_465, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_235_Biopsy_463, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_247_Biopsy_484, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_238_Biopsy_466, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_240_Biopsy_468, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_238_Biopsy_464, UC participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_234_Biopsy_460, UC participants,LeftColon NonI tissue

value: Mild


title: MSCCR_reGRID_233_Biopsy_458, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_234_Biopsy_459, UC participants,RightColon I tissue


title: MSCCR_reGRID_233_Biopsy_456, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_230_Biopsy_455, CD participants,Rectum I tissue

value: CD

value: Active

value: Moderate


title: MSCCR_reGRID_230_Biopsy_453, CD participants,Ileum I tissue

value: Male


title: MSCCR_reGRID_229_Biopsy_452, CD participants,Ileum I tissue


title: MSCCR_reGRID_230_Biopsy_454, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_228_Biopsy_451, UC participants,Rectum I tissue


title: MSCCR_reGRID_228_Biopsy_450, UC participants,LeftColon NonI tissue

value: LeftColon

value: NonI


title: MSCCR_reGRID_235_Biopsy_461, CD participants,LeftColon I tissue

value: IBD


title: MSCCR_reGRID_228_Biopsy_449, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_225_Biopsy_448, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_225_Biopsy_446, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_225_Biopsy_447, CD participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_224_Biopsy_445, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_224_Biopsy_443, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_223_Biopsy_442, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_224_Biopsy_444, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_223_Biopsy_440, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_223_Biopsy_441, CD participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_221_Biopsy_437, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_222_Biopsy_438, CD participants,LeftColon NonI tissue

value: Female


title: MSCCR_reGRID_221_Biopsy_436, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_220_Biopsy_434, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_221_Biopsy_435, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_233_Biopsy_457, UC participants,LeftColon I tissue

value: UC


title: MSCCR_reGRID_220_Biopsy_433, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_22_Biopsy_50, CD participants,Cecum I tissue

value: Severe


title: MSCCR_reGRID_22_Biopsy_49, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_22_Biopsy_51, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_219_Biopsy_431, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_217_Biopsy_429, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_217_Biopsy_428, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_219_Biopsy_432, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_216_Biopsy_426, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_215_Biopsy_425, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_217_Biopsy_427, CD participants,Ileum I tissue


title: MSCCR_reGRID_219_Biopsy_430, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_215_Biopsy_424, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_222_Biopsy_439, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_214_Biopsy_420, CD participants,Rectum I tissue

value: CD


title: MSCCR_reGRID_214_Biopsy_421, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_214_Biopsy_422, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_213_Biopsy_419, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_215_Biopsy_423, UC participants,Sigmoid I tissue


title: MSCCR_reGRID_213_Biopsy_418, CD participants,Rectum I tissue


title: MSCCR_reGRID_212_Biopsy_416, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_211_Biopsy_414, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_211_Biopsy_412, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_211_Biopsy_413, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_210_Biopsy_411, CD participants,Sigmoid NonI tissue

value: Mild


title: MSCCR_reGRID_210_Biopsy_410, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_210_Biopsy_409, CD participants,Ileum I tissue


title: MSCCR_reGRID_209_Biopsy_408, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_207_Biopsy_406, UC participants,Rectum I tissue


title: MSCCR_reGRID_208_Biopsy_407, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_207_Biopsy_404, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_207_Biopsy_405, UC participants,Sigmoid I tissue

value: Male


title: MSCCR_reGRID_206_Biopsy_402, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_206_Biopsy_403, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_205_Biopsy_400, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_206_Biopsy_401, CD participants,Ileum I tissue


title: MSCCR_reGRID_213_Biopsy_417, CD participants,RightColon NonI tissue

value: Moderate


title: MSCCR_reGRID_205_Biopsy_398, CD participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_203_Biopsy_397, CD participants,LeftColon NonI tissue

value: LeftColon

value: IBD


title: MSCCR_reGRID_205_Biopsy_399, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_202_Biopsy_392, CD participants,Ileum I tissue

value: Active


title: MSCCR_reGRID_212_Biopsy_415, CD participants,RightColon NonI tissue

value: Inactive


title: MSCCR_reGRID_203_Biopsy_395, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_203_Biopsy_396, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_201_Biopsy_391, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_202_Biopsy_393, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_201_Biopsy_390, CD participants,RightColon I tissue

value: I


title: MSCCR_reGRID_202_Biopsy_394, CD participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_200_Biopsy_387, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_200_Biopsy_388, UC participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_20_Biopsy_48, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_20_Biopsy_47, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_20_Biopsy_46, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_200_Biopsy_389, UC participants,LeftColon NonI tissue

value: UC


title: MSCCR_reGRID_198_Biopsy_382, UC participants,Rectum I tissue


title: MSCCR_reGRID_199_Biopsy_386, CD participants,RightColon NonI tissue

value: Severe


title: MSCCR_reGRID_198_Biopsy_383, UC participants,RightColon NonI tissue


title: MSCCR_reGRID_198_Biopsy_381, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_197_Biopsy_379, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_199_Biopsy_384, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_196_Biopsy_377, CD participants,Rectum NonI tissue

value: Rectum

value: CD


title: MSCCR_reGRID_196_Biopsy_375, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_199_Biopsy_385, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_193_Biopsy_369, CD participants,RightColon NonI tissue

value: Male


title: MSCCR_reGRID_192_Biopsy_367, CD participants,RightColon NonI tissue

value: Moderate


title: MSCCR_reGRID_194_Biopsy_372, CD participants,Rectum NonI tissue

value: NonI

value: Mild


title: MSCCR_reGRID_192_Biopsy_368, CD participants,Rectum I tissue

value: IBD


title: MSCCR_reGRID_193_Biopsy_370, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_194_Biopsy_373, CD participants,Ileum I tissue


title: MSCCR_reGRID_192_Biopsy_366, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_193_Biopsy_371, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_190_Biopsy_362, UC participants,RightColon NonI tissue

value: Inactive


title: MSCCR_reGRID_191_Biopsy_365, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_19_Biopsy_44, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_235_Biopsy_462, CD participants,RightColon NonI tissue

value: Female

value: Active


title: MSCCR_reGRID_19_Biopsy_45, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_189_Biopsy_361, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_197_Biopsy_380, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_189_Biopsy_360, CD participants,RightColon I tissue

value: RightColon


title: MSCCR_reGRID_188_Biopsy_358, UC participants,LeftColon I tissue


title: MSCCR_reGRID_188_Biopsy_359, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_190_Biopsy_363, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_197_Biopsy_378, UC participants,LeftColon I tissue


title: MSCCR_reGRID_188_Biopsy_357, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_196_Biopsy_376, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_194_Biopsy_374, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_187_Biopsy_355, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_185_Biopsy_353, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_185_Biopsy_352, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_184_Biopsy_351, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_180_Biopsy_345, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_180_Biopsy_344, CD participants,Ileum I tissue


title: MSCCR_reGRID_182_Biopsy_347, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_19_Biopsy_43, CD participants,Ileum I tissue


title: MSCCR_reGRID_182_Biopsy_348, CD participants,RightColon I tissue


title: MSCCR_reGRID_18_Biopsy_42, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_183_Biopsy_350, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_18_Biopsy_41, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_18_Biopsy_40, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_178_Biopsy_343, UC participants,Rectum I tissue


title: MSCCR_reGRID_177_Biopsy_339, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_178_Biopsy_342, UC participants,Sigmoid I tissue


title: MSCCR_reGRID_177_Biopsy_340, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_187_Biopsy_356, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_175_Biopsy_335, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_175_Biopsy_334, CD participants,Ileum I tissue

value: Ileum


title: MSCCR_reGRID_176_Biopsy_337, UC participants,Ileum NonI tissue

value: Severe


title: MSCCR_reGRID_174_Biopsy_333, CD participants,LeftColon NonI tissue

value: CD


title: MSCCR_reGRID_174_Biopsy_332, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_185_Biopsy_354, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_174_Biopsy_331, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_172_Biopsy_329, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_180_Biopsy_346, CD participants,Transverse NonI tissue

value: Male


title: MSCCR_reGRID_182_Biopsy_349, CD participants,Rectum NonI tissue

value: Rectum

value: Moderate


title: MSCCR_reGRID_170_Biopsy_327, CD participants,Sigmoid NonI tissue

value: NonI


title: MSCCR_reGRID_17_Biopsy_38, CD participants,Ileum I tissue

value: IBD

value: Mild


title: MSCCR_reGRID_170_Biopsy_328, CD participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_172_Biopsy_330, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_17_Biopsy_37, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_17_Biopsy_39, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_169_Biopsy_326, UC participants,Sigmoid I tissue

value: Female

value: I


title: MSCCR_reGRID_1677_Biopsy_2488, UC participants,Rectum I tissue

value: UC


title: MSCCR_reGRID_169_Biopsy_324, UC participants,RightColon NonI tissue

value: RightColon

value: Active


title: MSCCR_reGRID_169_Biopsy_325, UC participants,LeftColon I tissue


title: MSCCR_reGRID_1675_Biopsy_2485, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1678_Biopsy_2490, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1665_Biopsy_2484, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1677_Biopsy_2489, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_177_Biopsy_341, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_176_Biopsy_338, UC participants,Rectum I tissue

value: Severe


title: MSCCR_reGRID_1665_Biopsy_2482, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_175_Biopsy_336, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_1658_Biopsy_2481, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_1675_Biopsy_2487, UC participants,Rectum I tissue

value: Male


title: MSCCR_reGRID_1656_Biopsy_2479, UC participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_1675_Biopsy_2486, UC participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_1665_Biopsy_2483, UC participants,LeftColon I tissue


title: MSCCR_reGRID_1655_Biopsy_2476, CD participants,Cecum NonI tissue

value: NonI


title: MSCCR_reGRID_165_Biopsy_320, CD participants,Ileum NonI tissue

value: IBD


title: MSCCR_reGRID_165_Biopsy_319, CD participants,Rectum I tissue

value: Mild


title: MSCCR_reGRID_1655_Biopsy_2477, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1645_Biopsy_2474, UC participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_1645_Biopsy_2473, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_166_Biopsy_321, CD participants,Ileum I tissue


title: MSCCR_reGRID_1644_Biopsy_2472, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_166_Biopsy_323, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1656_Biopsy_2480, UC participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_1643_Biopsy_2470, CD participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_1641_Biopsy_2468, CD participants,Ileum NonI tissue

value: Moderate


title: MSCCR_reGRID_1643_Biopsy_2469, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1641_Biopsy_2467, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1655_Biopsy_2478, CD participants,Ileum I tissue

value: I


title: MSCCR_reGRID_1640_Biopsy_2465, UC participants,Sigmoid NonI tissue

value: UC


title: MSCCR_reGRID_1641_Biopsy_2466, CD participants,Rectum I tissue

value: Active


title: MSCCR_reGRID_166_Biopsy_322, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_1652_Biopsy_2475, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1638_Biopsy_2462, CD participants,Ileum I tissue


title: MSCCR_reGRID_1637_Biopsy_2460, UC participants,Cecum I tissue


title: MSCCR_reGRID_1634_Biopsy_2457, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1638_Biopsy_2464, CD participants,Cecum NonI tissue


title: MSCCR_reGRID_1637_Biopsy_2461, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_163_Biopsy_318, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_1638_Biopsy_2463, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_1636_Biopsy_2458, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1643_Biopsy_2471, CD participants,Rectum I tissue


title: MSCCR_reGRID_1627_Biopsy_2451, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_163_Biopsy_317, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1629_Biopsy_2454, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1634_Biopsy_2456, CD participants,Ileum I tissue


title: MSCCR_reGRID_191_Biopsy_364, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1632_Biopsy_2455, UC participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1625_Biopsy_2448, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1637_Biopsy_2459, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1627_Biopsy_2453, CD participants,Ileum I tissue


title: MSCCR_reGRID_1627_Biopsy_2452, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_1622_Biopsy_2442, UC participants,Ileum NonI tissue

value: NonI


title: MSCCR_reGRID_1626_Biopsy_2450, UC participants,Ileum NonI tissue

value: IBD


title: MSCCR_reGRID_1623_Biopsy_2443, CD participants,Rectum I tissue


title: MSCCR_reGRID_1620_Biopsy_2439, CD participants,RightColon I tissue

value: RightColon

value: Mild


title: MSCCR_reGRID_1620_Biopsy_2440, CD participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_1625_Biopsy_2447, CD participants,Rectum I tissue


title: MSCCR_reGRID_1624_Biopsy_2444, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1625_Biopsy_2449, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1619_Biopsy_2438, CD participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_1621_Biopsy_2441, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1624_Biopsy_2446, UC participants,Cecum I tissue

value: Cecum


title: MSCCR_reGRID_1619_Biopsy_2437, CD participants,Sigmoid I tissue

value: I


title: MSCCR_reGRID_1619_Biopsy_2436, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1618_Biopsy_2435, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1618_Biopsy_2434, CD participants,Ileum I tissue


title: MSCCR_reGRID_1617_Biopsy_2432, UC participants,Ileum NonI tissue

value: UC


title: MSCCR_reGRID_1618_Biopsy_2433, CD participants,Ileum NonI tissue

value: Active


title: MSCCR_reGRID_1612_Biopsy_2428, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1616_Biopsy_2431, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1611_Biopsy_2427, UC participants,Sigmoid I tissue

value: Moderate


title: MSCCR_reGRID_1612_Biopsy_2429, UC participants,Transverse I tissue

value: Transverse


title: MSCCR_reGRID_1608_Biopsy_2426, CD participants,Ileum I tissue

value: CD


title: MSCCR_reGRID_1605_Biopsy_2424, UC participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1603_Biopsy_2423, UC participants,Sigmoid I tissue


title: MSCCR_reGRID_1624_Biopsy_2445, UC participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1608_Biopsy_2425, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1603_Biopsy_2422, UC participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1602_Biopsy_2421, CD participants,Transverse I tissue

value: Severe


title: MSCCR_reGRID_1601_Biopsy_2419, UC participants,Ileum NonI tissue

value: NonI

value: IBD


title: MSCCR_reGRID_160_Biopsy_316, UC participants,Rectum I tissue


title: MSCCR_reGRID_16_Biopsy_36, CD participants,Sigmoid NonI tissue

value: Sigmoid


title: MSCCR_reGRID_16_Biopsy_35, CD participants,Transverse NonI tissue

value: Inactive


title: MSCCR_reGRID_1615_Biopsy_2430, UC participants,Ileum NonI tissue

value: Mild


title: MSCCR_reGRID_1595_Biopsy_2414, UC participants,Rectum I tissue

value: Female


title: MSCCR_reGRID_159_Biopsy_313, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1597_Biopsy_2416, CD participants,Cecum I tissue

value: Cecum

value: I


title: MSCCR_reGRID_1597_Biopsy_2415, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_159_Biopsy_314, UC participants,Cecum NonI tissue

value: UC


title: MSCCR_reGRID_159_Biopsy_312, UC participants,LeftColon I tissue


title: MSCCR_reGRID_1595_Biopsy_2413, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1589_Biopsy_2411, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_1586_Biopsy_2408, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1589_Biopsy_2412, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1587_Biopsy_2409, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1584_Biopsy_2406, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1583_Biopsy_2404, CD participants,Rectum I tissue


title: MSCCR_reGRID_1581_Biopsy_2402, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_158_Biopsy_310, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1584_Biopsy_2407, UC participants,Rectum I tissue


title: MSCCR_reGRID_1587_Biopsy_2410, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1602_Biopsy_2420, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1583_Biopsy_2405, CD participants,LeftColon I tissue


title: MSCCR_reGRID_1076_Biopsy_1823, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1601_Biopsy_2418, UC participants,Rectum I tissue


title: MSCCR_reGRID_160_Biopsy_315, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_16_Biopsy_34, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1074_Biopsy_1819, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_1073_Biopsy_1817, UC participants,Rectum I tissue

value: Active

value: Moderate


title: MSCCR_reGRID_1073_Biopsy_1816, UC participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1072_Biopsy_1814, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_1598_Biopsy_2417, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1077_Biopsy_1824, CD participants,Ileum I tissue


title: MSCCR_reGRID_107_Biopsy_216, CD participants,Transverse NonI tissue

value: Transverse


title: MSCCR_reGRID_158_Biopsy_311, CD participants,Rectum NonI tissue

value: Rectum


title: MSCCR_reGRID_1581_Biopsy_2403, CD participants,Ileum I tissue


title: MSCCR_reGRID_1075_Biopsy_1820, UC participants,Rectum I tissue


title: MSCCR_reGRID_1072_Biopsy_1815, CD participants,Rectum NonI tissue

value: NonI


title: MSCCR_reGRID_1075_Biopsy_1821, UC participants,Ileum NonI tissue

value: IBD


title: MSCCR_reGRID_1070_Biopsy_1813, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_107_Biopsy_214, CD participants,Sigmoid I tissue

value: Sigmoid


title: MSCCR_reGRID_1069_Biopsy_1812, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1067_Biopsy_1809, UC participants,Rectum NonI tissue

value: Inactive


title: MSCCR_reGRID_1077_Biopsy_1825, CD participants,Cecum NonI tissue

value: Mild


title: MSCCR_reGRID_107_Biopsy_215, CD participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_1066_Biopsy_1806, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1066_Biopsy_1807, UC participants,Rectum I tissue


title: MSCCR_reGRID_1076_Biopsy_1822, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1067_Biopsy_1808, UC participants,Sigmoid NonI tissue


title: MSCCR_reGRID_1063_Biopsy_1802, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1074_Biopsy_1818, UC participants,Rectum I tissue

value: I

value: Severe


title: MSCCR_reGRID_1063_Biopsy_1803, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1064_Biopsy_1804, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1061_Biopsy_1800, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_106_Biopsy_213, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_1062_Biopsy_1801, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1053_Biopsy_1799, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_1053_Biopsy_1798, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1069_Biopsy_1811, Control participants,Ileum NonI tissue

value: Control


title: MSCCR_reGRID_1053_Biopsy_1797, CD participants,Rectum I tissue

value: Moderate


title: MSCCR_reGRID_1068_Biopsy_1810, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1051_Biopsy_1796, UC participants,Rectum NonI tissue

value: Male


title: MSCCR_reGRID_1049_Biopsy_1795, CD participants,Ileum NonI tissue

value: CD


title: MSCCR_reGRID_1048_Biopsy_1794, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1047_Biopsy_1791, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1047_Biopsy_1792, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_105_Biopsy_211, CD participants,Rectum NonI tissue

value: Active


title: MSCCR_reGRID_1048_Biopsy_1793, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1046_Biopsy_1789, CD participants,Sigmoid I tissue


title: MSCCR_reGRID_1047_Biopsy_1790, UC participants,LeftColon I tissue

value: LeftColon


title: MSCCR_reGRID_1042_Biopsy_1786, Control participants,Rectum NonI tissue

value: Rectum

value: NonI


title: MSCCR_reGRID_1046_Biopsy_1788, CD participants,Rectum I tissue

value: IBD


title: MSCCR_reGRID_1044_Biopsy_1787, CD participants,Cecum I tissue


title: MSCCR_reGRID_1040_Biopsy_1782, UC participants,Sigmoid I tissue

value: Sigmoid

value: Inactive


title: MSCCR_reGRID_1040_Biopsy_1784, UC participants,Rectum I tissue


title: MSCCR_reGRID_1040_Biopsy_1783, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1037_Biopsy_1781, CD participants,Rectum NonI tissue

value: Female


title: MSCCR_reGRID_1065_Biopsy_1805, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1034_Biopsy_1778, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_106_Biopsy_212, UC participants,Ileum NonI tissue


title: MSCCR_reGRID_1042_Biopsy_1785, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1036_Biopsy_1780, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1036_Biopsy_1779, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1033_Biopsy_1775, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1034_Biopsy_1776, CD participants,Rectum I tissue

value: I


title: MSCCR_reGRID_1033_Biopsy_1774, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1034_Biopsy_1777, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1032_Biopsy_1773, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1032_Biopsy_1772, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1031_Biopsy_1771, CD participants,Rectum NonI tissue

value: Mild


title: MSCCR_reGRID_1031_Biopsy_1770, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1029_Biopsy_1768, UC participants,Rectum NonI tissue

value: UC


title: MSCCR_reGRID_1030_Biopsy_1769, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_103_Biopsy_209, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1028_Biopsy_1767, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_103_Biopsy_210, CD participants,LeftColon NonI tissue


title: MSCCR_reGRID_1028_Biopsy_1766, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1026_Biopsy_1765, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1022_Biopsy_1762, Control participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1024_Biopsy_1763, UC participants,Rectum I tissue


title: MSCCR_reGRID_1022_Biopsy_1761, Control participants,Rectum NonI tissue

value: Control


title: MSCCR_reGRID_1020_Biopsy_1758, CD participants,Transverse I tissue

value: Transverse


title: MSCCR_reGRID_1020_Biopsy_1759, CD participants,Ileum NonI tissue

value: Male


title: MSCCR_reGRID_1021_Biopsy_1760, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1020_Biopsy_1757, CD participants,Rectum NonI tissue

value: CD


title: MSCCR_reGRID_102_Biopsy_205, CD participants,Ileum I tissue


title: MSCCR_reGRID_1019_Biopsy_1756, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1019_Biopsy_1755, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_102_Biopsy_207, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_102_Biopsy_206, CD participants,RightColon NonI tissue

value: RightColon


title: MSCCR_reGRID_1018_Biopsy_1754, UC participants,Cecum NonI tissue


title: MSCCR_reGRID_1018_Biopsy_1752, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1018_Biopsy_1753, UC participants,Rectum I tissue


title: MSCCR_reGRID_1017_Biopsy_1751, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1016_Biopsy_1749, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_1015_Biopsy_1748, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1015_Biopsy_1747, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_1017_Biopsy_1750, Control participants,Ileum NonI tissue


title: MSCCR_reGRID_103_Biopsy_208, CD participants,Ileum NonI tissue

value: Active


title: MSCCR_reGRID_1013_Biopsy_1746, CD participants,Rectum I tissue

value: Rectum


title: MSCCR_reGRID_1026_Biopsy_1764, CD participants,Ileum NonI tissue

value: NonI

value: Moderate


title: MSCCR_reGRID_1012_Biopsy_1743, CD participants,Rectum NonI tissue

value: IBD


title: MSCCR_reGRID_1013_Biopsy_1745, CD participants,Ileum NonI tissue

value: Inactive


title: MSCCR_reGRID_1012_Biopsy_1744, CD participants,Ileum NonI tissue

value: Female


title: MSCCR_reGRID_1010_Biopsy_1742, UC participants,Rectum NonI tissue


title: MSCCR_reGRID_101_Biopsy_204, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_101_Biopsy_203, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1008_Biopsy_1741, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_1008_Biopsy_1740, CD participants,Ileum NonI tissue


title: MSCCR_reGRID_1004_Biopsy_1738, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1004_Biopsy_1739, Control participants,Cecum NonI tissue

value: Cecum


title: MSCCR_reGRID_1002_Biopsy_1737, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1001_Biopsy_1734, Control participants,Cecum NonI tissue


title: MSCCR_reGRID_1001_Biopsy_1735, Control participants,Rectum NonI tissue


title: MSCCR_reGRID_1000_Biopsy_1733, UC participants,Sigmoid I tissue

value: Sigmoid

value: I


title: MSCCR_reGRID_1000_Biopsy_1732, UC participants,Rectum I tissue

value: UC


title: MSCCR_reGRID_100_Biopsy_202, CD participants,Rectum NonI tissue


title: MSCCR_reGRID_100_Biopsy_201, CD participants,Sigmoid NonI tissue


title: MSCCR_reGRID_10_Biopsy_20, CD participants,Transverse NonI tissue


title: MSCCR_reGRID_10_Biopsy_18, CD participants,RightColon NonI tissue


title: MSCCR_reGRID_10_Biopsy_19, CD participants,LeftColon NonI tissue

value: LeftColon


title: MSCCR_reGRID_1_Biopsy_3, UC participants,Ileum NonI tissue

value: Ileum


title: MSCCR_reGRID_1_Biopsy_2, UC participants,LeftColon NonI tissue


title: MSCCR_reGRID_1_Biopsy_1, UC participants,Rectum NonI tissue


title: FL1 5 Diestrous

status: Public on Aug 30 2022

city: Bonn

first: Ulrich

last: Schweizer

state: NRW

address: Nussallee 11

department: Institut für Biochemie und Molekularbiologie

country: Germany

institute: Universitätsklinikum Bonn

data_processing:
Sequence reads were trimmed with bbduk.sh following manufacturer's protocol. ref=/data/resources/polyA.fa.gz,/data/resources/truseq.fa.gz k=13 ktrim=r useshortkmers=t mink=5 qtrim=t trimq=10 minlength=20
Reads were aligned with STAR aligner following the manufacturer's protocol. STAR  --outFilterType BySJout --outFilterMultimapNmax 20 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1   --outFilterMismatchNmax 999 --outFilterMismatchNoverLmax 0.1 --alignIntronMin 20   --alignIntronMax 1000000 --alignMatesGapMax 1000000 --outSAMattributes NH HI NM MD  --outSAMtype BAM SortedByCoordinate --outFileNamePrefix
Amount of sequences aligned to transcripts was counted with cuffdiff
Genome_build: GRCm38.101
Supplementary_files_format_and_content: table with 2 columns in .txt format, column1: Ensemble Gene Accession Number, column2: corresponding counts

organism: Mus musculus

source_name: Dummerstorf high-fertility mouse line FL1

extract_protocol:
total RNA was extracted using RNeasy Plus Micro Kit (Qiagen, Hilden, Germany) recommended by manufacturer.
Libraries were prepared with the QuantSeq 3’ mRNA-Seq Fw. Library Prep Kit (Lexogen) and sequenced to 10M raw reads on an Illumina HiSeq 2500 machine, following the manufacturer’s protocols.
RNA: total RNA was extracted using RNeasy Plus Micro Kit (Qiagen, Hilden, Germany) recommended by manufacturer. Libraries were prepared with the QuantSeq 3’ mRNA-Seq Fw. Library Prep Kit (Lexogen) and sequenced to 10M raw reads on an Illumina HiSeq 2500 machine, following the manufacturer’s protocols.

tag: Stage

value: Diestrous

tag: gender

value: female

tag: tissue

value: Ovar

tag: age

value: 77 days

tag: genotype


title: FL1 3 Diestrous


title: FL1 4 Diestrous


title: FL1 2 Diestrous


title: Ctrl 5 Diestrous

value: WT


title: FL1 1 Diestrous


title: Ctrl 4 Diestrous


title: Ctrl 3 Diestrous


title: Ctrl 1 Diestrous


title: Ctrl 2 Diestrous


title: FL1 5 Estrous

value: Estrous


title: MSCCR_reGRID_1002_Biopsy_1736, Control participants,Ileum NonI tissue

value: Control

value: NonI


title: FL1 4 Estrous


title: FL1 3 Estrous


title: FL1 2 Estrous


title: FL1 1 Estrous


title: Ctrl 3 Estrous


title: Ctrl 5 Estrous


title: Ctrl 2 Estrous


title: Ctrl 1 Estrous


title: motor_neuron_F9_FDQ_backfill

status: Public on Jul 29 2022

city: Basel

first: Patrick

last: Tschopp

address: Vesalgasse 1

department: Department of Environmental Sciences

country: Switzerland

institute: University of Basel

description:
F9
counts_MN_smartseq2.csv.gz

library_source: transcriptomic single cell

data_processing:
Raw reads were trimmed with Trimmomatic (v.0.39).
Trimmed reads were aligned with STAR (v.2.5.2) to the GRCg6a chicken genome.
Count tables were created with HTSeq (v.0.6.1).
Assembly: GRCg6a
Supplementary files format and content: Comma separated values file (.csv) . Count table created by HTSeq where genes are rows and cells are columns.

molecule: polyA RNA

organism: Gallus gallus

source_name: spinal cord

extract_protocol:
Backfilled spinal cord was dissociated with Papain (0,25 mg/ml) and individual fluorescent cells were transferred to PCR strips.
SMART-seq2

tag: celltype

value: motor neuron

value: spinal cord

value: embryonic day 9


title: motor_neuron_F7_FDQ_backfill

description:
F7
counts_MN_smartseq2.csv.gz


title: motor_neuron_F5_FDQ_backfill

description:
F5
counts_MN_smartseq2.csv.gz


title: motor_neuron_F8_FDQ_backfill

description:
F8
counts_MN_smartseq2.csv.gz


title: motor_neuron_F23_FDQ_backfill

description:
F23
counts_MN_smartseq2.csv.gz


title: Ctrl 4 Estrous


title: motor_neuron_F6_FDQ_backfill

description:
F6
counts_MN_smartseq2.csv.gz


title: motor_neuron_F24_FDQ_backfill

description:
F24
counts_MN_smartseq2.csv.gz


title: motor_neuron_F20_FDQ_backfill

description:
F20
counts_MN_smartseq2.csv.gz


title: motor_neuron_F21_FDQ_backfill

description:
F21
counts_MN_smartseq2.csv.gz


title: motor_neuron_F22_FDQ_backfill

description:
F22
counts_MN_smartseq2.csv.gz


title: motor_neuron_F19_FDQ_backfill

description:
F19
counts_MN_smartseq2.csv.gz


title: motor_neuron_F17_FDQ_backfill

description:
F17
counts_MN_smartseq2.csv.gz


title: motor_neuron_F18_FDQ_backfill

description:
F18
counts_MN_smartseq2.csv.gz