title: FLYWCH1.PBM13924.ME

source_name: FLYWCH1.PBM13924.ME PBM, ME design


title: HMG20A.PBM13631.ME

status: Public on Nov 11 2024

type: protein

city: Toronto

first: Timothy

last: Hughes

state: Ontario

address: 160 College Street, Room 1350

department: Terrence Donnelly Centre for Cellular and Biomolecular Research

country: Canada

institute: University of Toronto

hyb_protocol: We used 150 ng of plasmid DNA in a 15 μL in vitro transcription/ translation reaction using a PURExpress In Vitro Protein Synthesis Kit (New England BioLabs) supplemented with RNase inhibitor and 50 μM zinc acetate. After a 2-h incubation at 37°C, 12.5 μL of the mix was added to 137.5 μL of protein-binding solution for a final mix of PBS/2% skim milk/0.2 mg per mL BSA/50 μM zinc acetate/0.1% Tween-20. This mixture was added to an array previously blocked with PBS/2% skim milk and washed once with PBS/0.1% Tween-20 and once with PBS/0.01% Triton-X 100. After a 1-h incubation at room temperature, the array was washed once with PBS/0.5% Tween-20/50 mM zinc acetate and once with PBS/0.01% Triton-X 100/50 mM zinc acetate. Alexa 647-labeled anti-GST antibody was added, diluted in PBS/2% skim milk/50 mM zinc acetate. After a 1-h incubation at room temperature, the array was washed three times with PBS/0.05% Tween-20/50 mM zinc acetate and once with PBS/50 mM zinc acetate.

scan_protocol: The array was imaged using an Agilent microarray scanner at 2 uM resolution.  Images were scanned at two power settings: 100% photomultiplier tube (PMT) voltage (high), and 10% PMT (low).  The two resulting grid images were then manually examined, and the scan with the fewest number of saturated spots was used.   Image spot intensities were quantified using ImaGene software (BioDiscovery).

data_processing:
We provide several scores for each 8-mer in each experiment. VALUE - median kmer intensity; Z-Score – transformed kmer median intensity; E-score – Enrichment Score. E-scores are a modified version of AUC, and describe how well each kmer ranks the intensities of the spots.  Please see the supplementary files on the platform record (GPL11260) to match the raw data files with the array probes.
Median intensity for the 8mer sequence

label: Alexa 647

molecule: protein

organism: Homo sapiens

source_name: HMG20A.PBM13631.ME PBM, ME design

label_protocol: We used Alexa 647-labeled anti-GST antibody to detect the GST-tagged DNA binding proteins.

extract_protocol: DBD sequences along with 50 amino acid residues on either side of the DBD in the native protein were cloned into pTH6838, a modified T7-driven GST expression vector. We used 150 ng of plasmid DNA in a 15 μL in vitro transcription/ translation reaction using a PURExpress In Vitro Protein Synthesis Kit (New England BioLabs) supplemented with RNase inhibitor and 50 μM zinc acetate to produce the proteins.

tag: design

value: ME


title: DMRTB1.PBM13594.ME

source_name: DMRTB1.PBM13594.ME PBM, ME design


title: TET3.PBM13939.HK

source_name: TET3.PBM13939.HK PBM, HK design

value: HK


title: DMRTB1.PBM13610.HK

source_name: DMRTB1.PBM13610.HK PBM, HK design


title: TET3.PBM13923.ME

source_name: TET3.PBM13923.ME PBM, ME design


title: DMRTB1.PBM13593.ME

source_name: DMRTB1.PBM13593.ME PBM, ME design


title: CXXC4.PBM13586.HK

source_name: CXXC4.PBM13586.HK PBM, HK design


title: CXXC4.PBM13570.ME

source_name: CXXC4.PBM13570.ME PBM, ME design


title: FBXL19.PBM13937.HK

source_name: FBXL19.PBM13937.HK PBM, HK design


title: DMRTB1.PBM13609.HK

source_name: DMRTB1.PBM13609.HK PBM, HK design


title: KDM2A.PBM13938.HK

source_name: KDM2A.PBM13938.HK PBM, HK design


title: CXXC4.PBM13920.ME

source_name: CXXC4.PBM13920.ME PBM, ME design


title: FBXL19.PBM13921.ME

source_name: FBXL19.PBM13921.ME PBM, ME design


title: CAMTA2.PBM13555.HK

source_name: CAMTA2.PBM13555.HK PBM, HK design


title: CXXC4.PBM13936.HK

source_name: CXXC4.PBM13936.HK PBM, HK design


title: CAMTA2.PBM13539.ME

source_name: CAMTA2.PBM13539.ME PBM, ME design


title: CAMTA1.PBM13538.ME

source_name: CAMTA1.PBM13538.ME PBM, ME design


title: TIGD7.PBM13717.HK

source_name: TIGD7.PBM13717.HK PBM, HK design


title: TIGD7.PBM13701.ME

source_name: TIGD7.PBM13701.ME PBM, ME design


title: TIGD7.PBM13935.HK

source_name: TIGD7.PBM13935.HK PBM, HK design


title: TIGD4.PBM13716.HK

source_name: TIGD4.PBM13716.HK PBM, HK design


title: TIGD7.PBM13919.ME

source_name: TIGD7.PBM13919.ME PBM, ME design


title: CAMTA1.PBM13554.HK

source_name: CAMTA1.PBM13554.HK PBM, HK design


title: TIGD4.PBM13700.ME

source_name: TIGD4.PBM13700.ME PBM, ME design


title: TIGD4.PBM13918.ME

source_name: TIGD4.PBM13918.ME PBM, ME design


title: TIGD4.PBM13934.HK

source_name: TIGD4.PBM13934.HK PBM, HK design


title: TIGD3.PBM13715.HK

source_name: TIGD3.PBM13715.HK PBM, HK design


title: FLYWCH1.PBM13940.HK

source_name: FLYWCH1.PBM13940.HK PBM, HK design


title: TIGD3.PBM13699.ME

source_name: TIGD3.PBM13699.ME PBM, ME design


title: KDM2A.PBM13922.ME

source_name: KDM2A.PBM13922.ME PBM, ME design


title: TIGD3.PBM14437.ME

source_name: TIGD3.PBM14437.ME PBM, ME design


title: JRK.PBM13714.HK

source_name: JRK.PBM13714.HK PBM, HK design


title: TIGD3.PBM13917.ME

source_name: TIGD3.PBM13917.ME PBM, ME design


title: TIGD3.PBM14311.ME

source_name: TIGD3.PBM14311.ME PBM, ME design


title: TIGD3.PBM13933.HK

source_name: TIGD3.PBM13933.HK PBM, HK design


title: JRK.PBM13698.ME

source_name: JRK.PBM13698.ME PBM, ME design


title: JRK.PBM14310.ME

source_name: JRK.PBM14310.ME PBM, ME design


title: ZGPAT.PBM13915.ME

source_name: ZGPAT.PBM13915.ME PBM, ME design


title: JRK.PBM13932.HK

source_name: JRK.PBM13932.HK PBM, HK design


title: ZC3H8.PBM13486.HK

source_name: ZC3H8.PBM13486.HK PBM, HK design


title: JRK.PBM13916.ME

source_name: JRK.PBM13916.ME PBM, ME design


title: ZGPAT.PBM13931.HK

source_name: ZGPAT.PBM13931.HK PBM, HK design


title: ZC3H8.PBM13470.ME

source_name: ZC3H8.PBM13470.ME PBM, ME design


title: ZC3H8.PBM14453.HK

source_name: ZC3H8.PBM14453.HK PBM, HK design


title: MBNL2.PBM13913.ME

source_name: MBNL2.PBM13913.ME PBM, ME design


title: ZGPAT.PBM13930.HK

source_name: ZGPAT.PBM13930.HK PBM, HK design


title: MBNL2.PBM13929.HK

source_name: MBNL2.PBM13929.HK PBM, HK design


title: CPXCR1.PBM13583.HK

source_name: CPXCR1.PBM13583.HK PBM, HK design


title: CPXCR1.PBM13582.HK

source_name: CPXCR1.PBM13582.HK PBM, HK design


title: CPXCR1.PBM13567.ME

source_name: CPXCR1.PBM13567.ME PBM, ME design


title: DZIP1.PBM13568.ME

source_name: DZIP1.PBM13568.ME PBM, ME design


title: EEA1.PBM13569.ME

source_name: EEA1.PBM13569.ME PBM, ME design


title: DZIP1.PBM13584.HK

source_name: DZIP1.PBM13584.HK PBM, HK design


title: ZGPAT.PBM13914.ME

source_name: ZGPAT.PBM13914.ME PBM, ME design


title: ZC3H8.PBM13958.ME

source_name: ZC3H8.PBM13958.ME PBM, ME design


title: CHAMP1.PBM13581.HK

source_name: CHAMP1.PBM13581.HK PBM, HK design


title: CCDC17.PBM13401.ME

source_name: CCDC17.PBM13401.ME PBM, ME design


title: CCDC17.PBM13417.HK

source_name: CCDC17.PBM13417.HK PBM, HK design


title: CHAMP1.PBM13565.ME

source_name: CHAMP1.PBM13565.ME PBM, ME design


title: EEA1.PBM13585.HK

source_name: EEA1.PBM13585.HK PBM, HK design


title: CPXCR1.PBM13566.ME

source_name: CPXCR1.PBM13566.ME PBM, ME design


title: ATMIN.PBM13524.HK

source_name: ATMIN.PBM13524.HK PBM, HK design


title: ANKZF1.PBM13507.ME

source_name: ANKZF1.PBM13507.ME PBM, ME design


title: AKAP8L.PBM13522.HK

source_name: AKAP8L.PBM13522.HK PBM, HK design


title: AKAP8L.PBM13506.ME

source_name: AKAP8L.PBM13506.ME PBM, ME design


title: ATMIN.PBM13508.ME

source_name: ATMIN.PBM13508.ME PBM, ME design


title: ANKZF1.PBM13523.HK

source_name: ANKZF1.PBM13523.HK PBM, HK design


title: AC092835.PBM13520.HK

source_name: AC092835.PBM13520.HK PBM, HK design


title: AC092835.PBM13504.ME

source_name: AC092835.PBM13504.ME PBM, ME design


title: AC008770.PBM13502.ME

source_name: AC008770.PBM13502.ME PBM, ME design


title: AKAP8.PBM13521.HK

source_name: AKAP8.PBM13521.HK PBM, HK design


title: AC008770.PBM13519.HK

source_name: AC008770.PBM13519.HK PBM, HK design


title: AC008770.PBM13503.ME

source_name: AC008770.PBM13503.ME PBM, ME design


title: CREB3L3.PBM13580.HK

source_name: CREB3L3.PBM13580.HK PBM, HK design


title: CREB3L3.PBM13579.HK

source_name: CREB3L3.PBM13579.HK PBM, HK design


title: AC008770.PBM13518.HK

source_name: AC008770.PBM13518.HK PBM, HK design


title: CREB3L3.PBM13564.ME

source_name: CREB3L3.PBM13564.ME PBM, ME design


title: BATF2.PBM13500.ME

source_name: BATF2.PBM13500.ME PBM, ME design


title: POGK.PBM13713.HK

source_name: POGK.PBM13713.HK PBM, HK design


title: BATF2.PBM13517.HK

source_name: BATF2.PBM13517.HK PBM, HK design


title: POGK.PBM13697.ME

source_name: POGK.PBM13697.ME PBM, ME design


title: USF3.PBM13848.HK

source_name: USF3.PBM13848.HK PBM, HK design


title: CREB3L3.PBM13563.ME

source_name: CREB3L3.PBM13563.ME PBM, ME design


title: USF3.PBM13832.ME

source_name: USF3.PBM13832.ME PBM, ME design


title: SOHLH1.PBM13847.HK

source_name: SOHLH1.PBM13847.HK PBM, HK design


title: SOHLH1.PBM13830.ME

source_name: SOHLH1.PBM13830.ME PBM, ME design


title: SOHLH1.PBM13831.ME

source_name: SOHLH1.PBM13831.ME PBM, ME design


title: NCOA3.PBM13845.HK

source_name: NCOA3.PBM13845.HK PBM, HK design


title: AKAP8.PBM13505.ME

source_name: AKAP8.PBM13505.ME PBM, ME design


title: NCOA3.PBM13829.ME

source_name: NCOA3.PBM13829.ME PBM, ME design


title: NCOA2.PBM13844.HK

source_name: NCOA2.PBM13844.HK PBM, HK design


title: SOHLH1.PBM13846.HK

source_name: SOHLH1.PBM13846.HK PBM, HK design


title: NCOA2.PBM13828.ME

source_name: NCOA2.PBM13828.ME PBM, ME design


title: NCOA1.PBM13827.ME

source_name: NCOA1.PBM13827.ME PBM, ME design


title: BATF2.PBM13501.ME

source_name: BATF2.PBM13501.ME PBM, ME design


title: BHLHA9.PBM14809.ME

source_name: BHLHA9.PBM14809.ME PBM, ME design


title: ZBED9.PBM13696.ME

source_name: ZBED9.PBM13696.ME PBM, ME design


title: BHLHA9.PBM13515.HK

source_name: BHLHA9.PBM13515.HK PBM, HK design


title: ZBED4.PBM13975.HK

source_name: ZBED4.PBM13975.HK PBM, HK design


title: ZBED9.PBM13712.HK

source_name: ZBED9.PBM13712.HK PBM, HK design


title: ZBED4.PBM13826.ME

source_name: ZBED4.PBM13826.ME PBM, ME design


title: ZBED5.PBM13711.HK

source_name: ZBED5.PBM13711.HK PBM, HK design


title: BATF2.PBM13516.HK

source_name: BATF2.PBM13516.HK PBM, HK design


title: ZBED5.PBM13695.ME

source_name: ZBED5.PBM13695.ME PBM, ME design


title: ZBED3.PBM13710.HK

source_name: ZBED3.PBM13710.HK PBM, HK design


title: ZBED3.PBM13694.ME

source_name: ZBED3.PBM13694.ME PBM, ME design


title: ZBED4.PBM13842.HK

source_name: ZBED4.PBM13842.HK PBM, HK design


title: ZBED2.PBM13693.ME

source_name: ZBED2.PBM13693.ME PBM, ME design


title: FAM200B.PBM13707.HK

source_name: FAM200B.PBM13707.HK PBM, HK design


title: ZBED2.PBM13709.HK

source_name: ZBED2.PBM13709.HK PBM, HK design


title: FAM200B.PBM13691.ME

source_name: FAM200B.PBM13691.ME PBM, ME design


title: ZFTA.PBM13841.HK

source_name: ZFTA.PBM13841.HK PBM, HK design


title: SGSM2.PBM13692.ME

source_name: SGSM2.PBM13692.ME PBM, ME design


title: ZFTA.PBM13825.ME

source_name: ZFTA.PBM13825.ME PBM, ME design


title: SETBP1.PBM13840.HK

source_name: SETBP1.PBM13840.HK PBM, HK design


title: NCOA1.PBM13843.HK

source_name: NCOA1.PBM13843.HK PBM, HK design


title: SETBP1.PBM13823.ME

source_name: SETBP1.PBM13823.ME PBM, ME design


title: SETBP1.PBM13824.ME

source_name: SETBP1.PBM13824.ME PBM, ME design


title: SETBP1.PBM13822.ME

source_name: SETBP1.PBM13822.ME PBM, ME design


title: SETBP1.PBM13839.HK

source_name: SETBP1.PBM13839.HK PBM, HK design


title: SCML4.PBM13837.HK

source_name: SCML4.PBM13837.HK PBM, HK design


title: SCML4.PBM13821.ME

source_name: SCML4.PBM13821.ME PBM, ME design


title: PHF21A.PBM13820.ME

source_name: PHF21A.PBM13820.ME PBM, ME design


title: PHF21A.PBM13836.HK

source_name: PHF21A.PBM13836.HK PBM, HK design


title: GLYR1.PBM13642.HK

source_name: GLYR1.PBM13642.HK PBM, HK design


title: GLYR1.PBM14697.HK

source_name: GLYR1.PBM14697.HK PBM, HK design


title: GLYR1.PBM13625.ME

source_name: GLYR1.PBM13625.ME PBM, ME design


title: GLYR1.PBM13626.ME

source_name: GLYR1.PBM13626.ME PBM, ME design


title: SGSM2.PBM13708.HK

source_name: SGSM2.PBM13708.HK PBM, HK design


title: GLYR1.PBM13641.HK

source_name: GLYR1.PBM13641.HK PBM, HK design


title: DNTTIP1.PBM13577.HK

source_name: DNTTIP1.PBM13577.HK PBM, HK design


title: DNTTIP1.PBM13561.ME

source_name: DNTTIP1.PBM13561.ME PBM, ME design


title: DNTTIP1.PBM13578.HK

source_name: DNTTIP1.PBM13578.HK PBM, HK design


title: AKNA.PBM13819.ME

source_name: AKNA.PBM13819.ME PBM, ME design


title: AKNA.PBM13514.HK

source_name: AKNA.PBM13514.HK PBM, HK design


title: AHCTF1.PBM13513.HK

source_name: AHCTF1.PBM13513.HK PBM, HK design


title: SETBP1.PBM13838.HK

source_name: SETBP1.PBM13838.HK PBM, HK design


title: DNTTIP1.PBM13562.ME

source_name: DNTTIP1.PBM13562.ME PBM, ME design


title: ARID2.PBM13834.HK

source_name: ARID2.PBM13834.HK PBM, HK design


title: KDM5B.PBM13833.HK

source_name: KDM5B.PBM13833.HK PBM, HK design


title: KDM5B.PBM13817.ME

source_name: KDM5B.PBM13817.ME PBM, ME design


title: AKNA.PBM13835.HK

source_name: AKNA.PBM13835.HK PBM, HK design


title: AHCTF1.PBM13497.ME

source_name: AHCTF1.PBM13497.ME PBM, ME design


title: KC LG-PanIN Microdissection

type: SRA

city: Jacksonville

first: Peter

last: Storz

state: FL

address: 4500 San Pablo Rd

department: Department of Cancer Biology

country: USA

institute: Mayo Clinic

library_source: transcriptomic

data_processing:
MAPRSeq 2.0.0 workflow ( a comprehensive computational workflow used for obtaining genomic features from transcriptomic sequencing data; version 2: multi-threaded, cluster environment), 'firststrand' option (PMCID: PMC4228501)
Aligner: TopHat
Assembly: mm10
Supplementary files format and content: comma-separated value file includes RPKM values for each sample

molecule: total RNA

organism: Mus musculus

source_name: pancreas

extract_protocol:
Tissue was frozen in Tissue-Tek O.C.T. Compound. 10 µm sections were cut and placed on PEN membrane slides followed by staining with Cresyl Violet (Ambion LCM Staining Kit). Tissue was microdissected within 1 hour of fixation. RNA was extracted using the Qiagen RNeasy Micro Kit
TruSeq Str Total RNA (Degraded RNA) v2

tag: tissue

value: pancreas

tag: cell type

value: low-grade PanIN

tag: genotype


title: LJM7089 treatment replicate C

city: Rochester

first: Brandon

last: Wilbanks

state: Minnesota

address: 222 3rd Ave SW

data_processing:
Quantification with salmon
Assembly: GRCh38
Supplementary files format and content: .sf files from salmon

extract_protocol:
Commercial total RNA prep kit
Total RNA prep

tag: treatment


title: LJM7089 treatment replicate B


title: LJM7083 treatment replicate C


title: GLYR1.PBM14681.ME

source_name: GLYR1.PBM14681.ME PBM, ME design


title: LJM7080 treatment replicate C


title: LJM7083 treatment replicate B


title: LJM7080 treatment replicate A


title: LJM7083 treatment replicate A


title: LJM7006 treatment replicate B


title: AKNA.PBM13498.ME

source_name: AKNA.PBM13498.ME PBM, ME design


title: LJM7006 treatment replicate C


title: LJM7006 treatment replicate A


title: LJM7004 treatment replicate C


title: LJM7004 treatment replicate B


title: KC Acinar Microdissection

value: acinar cells


title: LJM7004 treatment replicate A


title: LJM6699 treatment replicate C


title: LJM6699 treatment replicate A


title: LJM6699 treatment replicate B


title: ARID2.PBM13818.ME

source_name: ARID2.PBM13818.ME PBM, ME design


title: LJM3064 treatment replicate B


title: LJM6214 treatment replicate B


title: LJM6214 treatment replicate A


title: LJM3064 treatment replicate A


title: LJM7089 treatment replicate A


title: LJM6214 treatment replicate C


title: LJM3064 treatment replicate C


title: Liver, MOCA treated female humanized-liver mice-5

city: Osaka

first: Shugo

last: Suzuki

state: Osaka

address: 1-4-3 Asahi-machi, Abeno-ku

department: Molecular Pathology

country: Japan

institute: Osaka Metropolitan University Graduate School of Medicine

data_processing:
Quality trimming and adapter clipping of the read data were performed using Trimmomatic version 0.38.
Trimmed reads were mapped to the transcript in the human  reference sequence hg38 using Bowtie2 aligner within RSEM.
Read count extraction and normalization were performed using edgeR program.
Assembly: hg38
Supplementary files format and content: tab-delimited text file. normalized CPM count matrix with GeneSymbol index.

source_name: Liver

growth_protocol: Female 8-week-old NOG mice expressing HSVtk mutant clone 30 cDNA under the control of mouse transthyretin gene enhancer/promoter (F1-TKm30 mice) were transplanted with commercially available human hepatocytes (humanized-liver mice).

extract_protocol:
RNeasy Mini Kit was performed according to the manufacturer's instructions.
The sequencing libraries were prepared from 200 ng of total RNA with MGIEasy rRNA Depletion Kit and MGIEasy RNA Directional Library Prep Set (MGI Tech Co., Ltd.) according to the manufacturer's instructions.

treatment_protocol: Female 17- or 21-week-old humanized-liver mice were treated with 0 or 0.05% 4,4'-Methylenebis(2-chlorobenzenamine) (MOCA) for 4 weeks.

value: Liver

value: primary culture cell

tag: age (weeks)

tag: Sex

value: female

value: MOCA

tag: time

value: 4 weeks


title: Liver, MOCA treated female humanized-liver mice-4


title: LJM7080 treatment replicate B


title: Liver, MOCA treated female humanized-liver mice-2


title: Liver, control female humanized-liver mice-1

value: Control


title: gingiva tissue from healthy control (HG)

city: Guangzhou

first: Ming

last: Wang

country: China

description: 10x genomics

library_source: transcriptomic single cell

data_processing:
Raw sequencing data were demultiplexed and aligned using Cell Ranger.
Assembly: mm10
Supplementary files format and content: tab-separated values files and matrix files

organism: Canis lupus familiaris

source_name: only gingiva of healthy control

extract_protocol:
alveolar bone was cut into small pieces (<1 mm3) and gingiva tissue were minced and digested separately using 3 mg/mL collagenase type I (Gibco) and 4 mg/mL dispase II (Sigma) for 60 min at 37°C as previously described14. Red blood cells were lysed with 1 mL Red Cell Lysis Solution (Biosharp, China). Cells were centrifuged and resuspended in 1% BSA solution. Following resuspended, cells were passed through a 40 μm filter (Biosharp), washed, and counted with a Countess™ 3 Automatic cell counter
Single-cell RNA-seq libraries were prepared using the Chromium Single Cell 3ʹ Reagent Kits v3 (10x Genomics), according to the manufacturer’s instructions. Briefly, approximately 35000 cells/ FACS-sorted cells were washed with 0.04% BSA DPBS for three times and were resuscitated to a concentration of 700~1200 cells/ul (viability≥85%). Cells were captured in droplets at a targeted cell recovery of cells. After the reverse transcription step, emulsions were broken and barcoded-cDNA was purified with Dynabeads, followed by PCR amplification. Amplified cDNA was then used for 3’gene expression library construction. For gene expression library construction, 50 ng of amplified cDNA was fragmented and end-repaired, double-size selected with SPRIselect beads, and sequenced on an NovaSeq platform (Illumina) to generate 150 bp paired-end Reads.

value: healthy gingiva tissue

value: fibroblast, endothelial, epithelial, immune cells


title: bone tissue from peri-implantitis (PB)

description: 10x genomics

source_name: only alveolar bone of peri-impantitis

value: peri-implantitis bone tissue


title: Liver, control female humanized-liver mice-4


title: bone tissue from healthy control (HB)

description: 10x genomics

source_name: only alveolar bone of healthy control

value: healthy bone tissue


title: gingiva tissue from peri-implantitis (PG)

description: 10x genomics

source_name: only gingiva of peri-implantitis

value: peri-implantitis gingiva tissue


title: Liver, control female humanized-liver mice-3


title: Liver, control female humanized-liver mice-2


title: HA_PPHLN1_L3xA_rep2

city: Cambridge

first: Paul

middle: J

last: Lehner

address: Puddicome Way

department: CITIID

country: United Kingdom

institute: University of Cambridge

library_source: other

data_processing:
UMIs extracted with umi_tools
Adapter trimming with Cutadapt
Alignment with HISAT2
Deduplication with umi_tools
Deeptools was used to create BigWig files (CPM normalised)
Assembly: GRCh38.15
Supplementary files format and content: BigWig files

molecule: other

growth_protocol: Cells were grown in Iscove’s Modified Dulbecco’s Medium supplemented with 10% FBS and 100U/ml penicillin, 100mg/ml streptomycin

extract_protocol:
UV-treated cells were harvested in HLB-N buffer. Nuclei were obtained by centrifugation after HLB + NS addition and lysed in RIP-buffer and DNase treated.
SMARTer Stranded Total RNA-Seq Kit V3—Pico Input Mammalian (Takara Bio)
UV-RIP-seq

tag: cell line

value: PPHLN1 SETDB1 dKO

tag: construct


title: Liver, MOCA treated female humanized-liver mice-3


title: HA_PPHLN1_L356R_rep2


title: Liver, MOCA treated female humanized-liver mice-1


title: HA_PPHLN1_L3xA_rep1


title: HA_PPHLN1_L356R_rep1


title: Empty_vector_rep2


title: HA_PPHLN1_1_222_rep1


title: Empty_vector_rep1


title: HA_PPHLN1_1_222_rep2


title: serum_Her2+_rep1

type: RNA

city: Guangdong,Guangzhou

first: He

middle: Yong

last: yin

address: No. 111, Liuhua Road, Yuexiu district, Guangzhou, Guangdong Province, China

department: Department of Laboratory Medicine

institute: Theatre Command of PLA

description: differentially expressed lncRNAs from serum samples of Her-2+ breast cancer patients

hyb_protocol: 1.5 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 250 ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 250 ul of 2x Agilent 2x GEx Hybridization Buffer HI-RPM was added to the fragmentation mixture and hybridized to Agilent-079487 Arraystar Human LncRNA microarray V4 for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent Microarray Scanner (G2565BA) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 10um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters (protocol GE1-v1_91 and Grid: 012391_D_20060331) to obtain.

source_name: human serum, Her2+

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 1 ug RNA using the Quick Amp Labeling Kit, One-Color (Agilent p/n 5190-0442) according to the manufacturer's instructions, followed by RNeasy Mini Kit (Qiagen p/n 74104). Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: RNA was prepared using the TRIzol® Reagent (Invitrogen life technologies) following the manufacturer's recommendations.  The protocol includes Total RNA Clean-up and RNA QC.  RNA was quantified using a NanoDrop-1000 spectrophotometer.

value: human serum

tag: subject status

tag: age

tag: molecule subtype

value: lncRNA


title: HA_PPHLN1_1_147_rep2


title: serum_LuminalB_rep2

description: differentially expressed lncRNAs from serum samples of Luminal B breast cancer patients

source_name: human serum, LuminalB

value: LuminalB


title: serum_LuminalA_rep3

description: differentially expressed lncRNAs from serum samples of Luminal A breast cancer patients

source_name: human serum, LuminalA

value: LuminalA


title: HA_PPHLN1_1_147_rep1


title: serum_TNBC_rep3

description: differentially expressed lncRNAs from serum samples of triple negative breast cancer patients

source_name: human serum, TNBC

value: TNBC


title: serum_Her2+_rep3

description: differentially expressed lncRNAs from serum samples of Her-4+ breast cancer patients


title: serum_TNBC_rep2


title: HA_PPHLN1_1_127_rep2


title: serum_LuminalA_rep1


title: serum_healthy_rep1

description: differentially expressed lncRNAs from serum samples of healthy controls

source_name: human serum, Healthy

value: healthy


title: serum_LuminalA_rep2


title: serum_TNBC_rep1


title: serum_LuminalB_rep3


title: serum_healthy_rep3


title: serum_healthy_rep2


title: serum_LuminalB_rep1


title: HA_PPHLN1_full_length_rep1


title: serum_Her2+_rep2

description: differentially expressed lncRNAs from serum samples of Her-3+ breast cancer patients


title: HA_PPHLN1_full_length_rep2


title: 30kGFPpos3_Cardiomyocytes

city: Clayton

first: Hieu

middle: Tri

last: Nim

state: VIC

address: Monash University Clayton Campus, Wellington Rd

department: Australian Regenerative Medicine Institute

country: Australia

institute: Monash University

data_processing:
FASTQ files were quality trimmed for overrepresented sequences using Cutadapt (version 1.16) (Martin, 2011). The files were then processed for mapping and obtaining read counts with RNAsik (Tsyganov et al, 2018), using default parameters. There were two sets of counts obtained, the first were the reads mapped to genome Zv9, and the second to genome Zv10. Read counts obtained from mapping to Zv10 were used for RNA-seq analysis and visualizations. Read counts obtained from mapping to Zv9 were used for RNA-seq analysis to obtain a set of DEGs and were then used to overlap with the genes associated to peaks of the ChIP-seq data sets.
Assembly: Zv9, Zv10
Supplementary files format and content: txt.gz: compressed tab-delimited text files include count values for each sample

organism: Danio rerio

source_name: Heart

extract_protocol:
RNA extraction was performed using the RNEasy Plus Micro Kit (Qiagen) according to the instructions provided in the manual. Integrity of the extracted RNA was assessed with BioAnalyzer (Agilent) and the concentration was measured with Qubit (Q32866, Qubit™ RNA HS Assay Kit Q32852, ThermoFisher Scientific).
RNA libraries were prepared for sequencing using standard Illumina protocols

value: Heart

value: Primary cells

value: Cardiomyocytes

tag: gfp status

value: GFPpos


title: 500kGFPneg5_Non-cardiomyocytes

value: Non-cardiomyocytes

value: GFPneg

value: Control


title: HA_PPHLN1_1_127_rep1


title: 500kGFPneg4_Non-cardiomyocytes


title: 30kGFPpos1_Cardiomyocytes


title: 500kGFPneg6_Non-cardiomyocytes


title: CTCF_INPUT

city: Memphis

first: Beisi

last: Xu

state: Tennessee

address: 262 Danny Thomas Pl

department: Center for Applied Bioinformatics

institute: St Jude Children's Research Hosipital

library_source: genomic

data_processing:
We performed single-end 51-cycle sequencing on the NovaSeq 6000 sequencer (Illumina). raw reads were trimmed using TrimGalore (v0.6.3) and aligned to hybrid-genome constructed from human GRCh37.p13 genome and the Drosophila melanogaster (dm6) genome using BWA (v0.7.17-r1198). Duplicated and low mapping quality reads were removed using “bamsormadup” function from the biobambam2 tool (v2.0.87) and samtools (version 1.9, parameter “-q 1 -F 1024”).
Human and Drosophila reads were then extracted into two separated bam files. The fragment size in each sample was estimated based on the cross-correlation profile calculated from SPP (v1.11). Fragments were extended to fragment size and normalized to 15 million reads to generate bigwig files for hg19.
Assembly: hg19+dm6
Supplementary files format and content: bigwig

molecule: genomic DNA

source_name: Blood

growth_protocol: All SEM cells and derivative lines were cultured in RPMI-1640 medium (Lonza) containing 10 % fetal bovine serum (Hyclone), 2 mM glutamine (Sigma), and 1% penicillin/streptomycin (Thermo Fisher Scientific) in an incubator at 37 °C, 5 % CO2 and 95 % humidity.

extract_protocol:
Chromatin was sheared by the Covaris M220 ultrasonicator (duty factor of 10, cycles/burst 200 for 10 min at set point 6°C). After clarification by centrifugation at 8,000 x g for 10 mins, the chromatin was moved to a new 1.5 mL Eppendorf tube, and the buffer was amended for immunoprecipitation (final concentration: 50 mM Tris HCL pH 7.4, 100 mM NaCl, 1 mM EDTA, 1 % SDS, 0.5 % Na Deoxycholate plus protease inhibitors). Chromatin was incubated with anti-HA magnetic beads (Pierce) at 4 °C overnight with gentle rotation. On a magnetic stand, the beads were washed twice with wash buffer 1 (50 mM Tris HCL pH 7.4, 1 M NaCl, 1 mM EDTA, 1 % NP-40, 0.1 % SDS, 0.5 % Na Deoxycholate plus protease inhibitors) and once with wash buffer 2 (20 mM Tris HCL pH 7.4, 10 mM MgCl2, 0.2 % Tween-20 plus protease inhibitors). The beads in wash buffer 2 were transferred to a new 1.5 mL Eppendorf tube and placed on a magnetic stand to remove the wash buffer. Decrosslinking was carried out in 1X TE plus 1 % SDS, proteinase K, and 400 mM NaCl at 65 °C for 4 h, followed by phenol, chloroform, and isopropyl alcohol precipitation of the DNA.
NEBNext Ultra II NEB Library Prep Kit and NEBNext Multiplex oligos for Illumina were used to construct libraries for sequencing.

treatment_protocol: CTCFAID2/WT cells were treated with 1 uM Triptolide or DMSO for 8 h concurrent with 5-Ph-IAA and doxycycline treatment. For RnaseA A ChIP, RnaseA A treatment conditions were adapted from those previously reported (Saldana-Meyer et al. 2019, Beltran et al. 2016). Cells were permeabilized before fixation by 0.05% TWEEN-20 in PBS for 10 minutes on ice, washed once with PBS and resuspended in PBS plus 1mg/mL RnaseA A or mock treated and rotated for 45 minutes at room temperature. Each treatment group (+RnaseA A, -RnaseA A) was performed in triplicate. For both Triptolide and RnaseA A ChIP groups, chromatin was prepared as described above. Spike-in antibody and chromatin (Active Motif, 61686 and 53083) along with CTCF antibody (10 g, Diagenode, C15410210-50) were added to the chromatin and incubated at 4 °C overnight with gentle rotation. The next day, pre-washed Protein G beads (Dynabeads, Invitrogen, 10004D) were added and incubated 4 °C for 4 h with gentle rotation. Washes and elution of DNA were as described above.

value: Blood

value: SEM

value: B-ALL

value: no treatment


title: 30kGFPpos2_Cardiomyocytes


title: CTCF_plusRnaseA_45min_Rep3

value: 1mg/mL RnaseA A for 45 minutes


title: CTCF_plusRnaseA_45min_Rep2


title: CTCF_minusRnaseA_45min_Rep2

value: mock treatment for 45 minutes


title: CTCF_plusTRIP_8hrs_Rep2

value: 8h 1um Triptolide concurrent with 5-Ph-IAA and doxycycline


title: CTCF_plusTRIP_8hrs_Rep3.bw


title: CTCF_plusDMSO_8hrs_Rep2

value: 8h DMSO concurrent with 5-Ph-IAA and doxycycline


title: CTCF_plusTRIP_8hrs_Rep1


title: CTCF_plusDMSO_8hrs_Rep1


title: CTCF_minusRnaseA_45min_Rep1


title: CTCF_WT_Endogenous_Rep2


title: CTCF_WT_Endogenous_Rep1


title: CTCF_plusRnaseA_45min_Rep1


title: A1150PBMC, A8172PBMC, A5833_2PBMC; STP1, STP2, other; CSP

city: Taoyuan

first: Chuang-Wei

address: No. 5, Fusing St

country: Taiwan

institute: cgmh

description: 10X Genomics

data_processing:
Sequence Alignment
Quality Control
Gene Expression Quantification
Normalization
Differential Expression Analysis
Assembly: Genome Build
Supplementary files format and content: CSV/TSV
Library strategy: CSP

source_name: PBMC

growth_protocol: Not applicable as this study involves clinical samples from patients rather than in vitro cell cultures

extract_protocol:
Not applicable for growth or treatment as per the study design
Sample Collection,Cell Lysis,RNA Extraction
RNA Quality Check,cDNA Synthesis,Second-Strand Synthesis,End Repair and A-Tailing,Adapter Ligation,Library Amplification
Strategy,Barcoding

value: PBMC


title: A1150PBMC, A8172PBMC, A5833_2PBMC; STP1, STP2, other; GEX

description: 10X Genomics

data_processing:
Sequence Alignment
Quality Control
Gene Expression Quantification
Normalization
Differential Expression Analysis
Assembly: Genome Build
Supplementary files format and content: CSV/TSV

treatment_protocol: Not applicable for growth or treatment as per the study design


title: A9316_1PBMC, A9316_10PBMC; STP3, other; CSP

description: 10X Genomics


title: A9316BC; STB3; GEX

description: 10X Genomics

source_name: BC

value: BC


title: CTCF_minusRnaseA_45min_Rep3


title: AdrC1791, AdrC1980; ITP4, ITP5; TCR

description: 10X Genomics

data_processing:
Sequence Alignment
Quality Control
Gene Expression Quantification
Normalization
Differential Expression Analysis
Assembly: Genome Build
Supplementary files format and content: CSV/TSV
Library strategy: scTCR-seq


title: A9316_1PBMC, A9316_10PBMC; STP3, other; GEX

description: 10X Genomics


title: AD8172BC; STB2; GEX

description: 10X Genomics


title: AdrC1791, AdrC1980; ITP4, ITP5; GEX

description: 10X Genomics


title: AdrD1150BC; STB1; GEX

description: 10X Genomics


title: AdrC1595, AdrC1599; ITP1, ITP2; GEX

description: 10X Genomics


title: AC1608_PBMC; ITP3; GEX

description: 10X Genomics


title: AdrC1595, AdrC1599; ITP1, ITP2; CSP

description: 10X Genomics


title: AdrC1595, AdrC1599; ITP1, ITP2; TCR

description: 10X Genomics


title: AD64416_PBMC; ISP1_post; GEX

description: 10X Genomics


title: AC1608_PBMC; ITP3; TCR

description: 10X Genomics


title: AD64416_PBMC; ISP1_post; TCR

description: 10X Genomics


title: AD82431_PBMC; ISP3; TCR

description: 10X Genomics


title: AD7170_PBMC; ISP2; TCR

description: 10X Genomics


title: AD64412_PBMC; ISP1; TCR

description: 10X Genomics


title: AdrD10573BC, AdrD10573_2PBMC, AdrD10573_4PBMC; ISB5, ISP5, ISP5_post; TCR

description: 10X Genomics

source_name: BC, PBMC

value: BC, PBMC


title: AD64412_PBMC; ISP1; GEX

description: 10X Genomics


title: AD82431_PBMC; ISP3; GEX

description: 10X Genomics


title: AdrD9996_BC, AdrD9996_PBMC; ISB4, ISP4; TCR

description: 10X Genomics


title: AdrD9996_BC, AdrD9996_PBMC; ISB4, ISP4; GEX

description: 10X Genomics


title: AdrD10573BC, AdrD10573_2PBMC, AdrD10573_4PBMC; ISB5, ISP5, ISP5_post; GEX

description: 10X Genomics


title: AdrD8243_BC, AdrD8243_PBMC; ISB3, ISP3_post; TCR

description: 10X Genomics


title: AdrD8243_BC, AdrD8243_PBMC; ISB3, ISP3_post; CSP

description: 10X Genomics


title: AdrD9996_BC, AdrD9996_PBMC; ISB4, ISP4; CSP

description: 10X Genomics


title: AdrD8243_BC, AdrD8243_PBMC; ISB3, ISP3_post; GEX

description: 10X Genomics


title: AD6441_BC; ISB1; TCR

description: 10X Genomics


title: AD7170_BC, ISB2; GEX

description: 10X Genomics


title: AdrC1791, AdrC1980; ITP4, ITP5; CSP

description: 10X Genomics


title: AD6441_BC; ISB1; GEX

description: 10X Genomics


title: HD49_PBMC; HD2; TCR

description: 10X Genomics


title: AD7581_PBMC; IMP1; TCR

description: 10X Genomics


title: AD7581_PBMC; IMP1; GEX

description: 10X Genomics


title: HD131_PBMC; HD1; GEX

description: 10X Genomics


title: ACCEPT_sample_50

city: Chapel Hill

first: Jen Jen

last: Yeh

state: North Carolina

address: 450 West drive

institute: The University of North Carolina at Chapel Hill

data_processing:
BCL files were converted to FASTQ files using bcl2fastq2 conversion software 2.20.0
Individual lane files were combined into one FASTQ file for each sample
Salmon (v1.5.2 with options gcBias and seqBias) was used to derive read count, gene-length and total read count normalized counts (TPM)
Assembly: GENCODE Release 38 (GrCh38.p13)
Supplementary files format and content: comma-separated file containing Bulk RNAseq gene expression normalized TPM for all samples

source_name: Primary  PDAC

extract_protocol:
Total RNA was extracted from cassettes using the AllPrep DNA/RNA FFPE Kit (Qiagen, 80234). RNA was quantified using the Qubit RNA HS Assay Kit (Invitrogen, Q32852) and quality assessed with the 4150 TapeStation System (Agilent) and RNA ScreenTape Analysis Kit (Agilent, 5067-5576).
For samples below dv200 30%, a 1.1X or a 1.1X and successive 1.0X bead cleanups was completed using RNAClean XP Beads (Beckman Coulter, A63987) cDNA libraries were prepped with the KAPA Stranded RNA-Seq Kit with RiboErase (HMR) (Roche, KR1151) if total RNA was >25ng and >24% dv200. If dv200 was below 50%, the low input KAPA Prep protocol was used. 17 cycles were used for the final PCR cycle. The remaining samples were prepped using AmpliSeq for Illumina Transcriptome Human Gene Expression Panel (Illumina, 20019170, 20019102).16 cycles were used to amplify target regions in the cDNA

value: Primary  PDAC

value: Gemcitabine/Afatinib


title: AD7170_PBMC; ISP2; GEX

description: 10X Genomics


title: ACCEPT_sample_48


title: HD49_PBMC; HD2; GEX

description: 10X Genomics


title: ACCEPT_sample_49

value: Gemcitabine


title: ACCEPT_sample_45


title: AdrD10573BC, AdrD10573_2PBMC, AdrD10573_4PBMC; ISB5, ISP5, ISP5_post; CSP

description: 10X Genomics


title: ACCEPT_sample_36


title: ACCEPT_sample_37


title: ACCEPT_sample_38


title: ACCEPT_sample_35


title: ACCEPT_sample_33


title: AD7170_BC, ISB2; TCR

description: 10X Genomics


title: ACCEPT_sample_31


title: ACCEPT_sample_32


title: ACCEPT_sample_3


title: ACCEPT_sample_29


title: ACCEPT_sample_25


title: RASH_sample_238

value: Gemcitabine/Erlotinib + FOLFIRINOX


title: RASH_sample_242

value: Gemcitabine/Erlotinib


title: RASH_sample_235


title: RASH_sample_237


title: HD131_PBMC; HD1; TCR

description: 10X Genomics


title: ACCEPT_sample_26


title: RASH_sample_222


title: RASH_sample_225

value: Gemcitabine/Erlotinib + No_further


title: RASH_sample_221


title: ACCEPT_sample_47


title: RASH_sample_217


title: ACCEPT_sample_43


title: RASH_sample_228


title: RASH_sample_219


title: RASH_sample_213


title: RASH_sample_214


title: RASH_sample_207


title: RASH_sample_209


title: RASH_sample_205


title: RASH_sample_203


title: ACCEPT_sample_20


title: RASH_sample_198


title: RASH_sample_193


title: RASH_sample_194


title: RASH_sample_192


title: RASH_sample_233


title: RASH_sample_215


title: RASH_sample_187


title: RASH_sample_185


title: RASH_sample_186


title: RASH_sample_183


title: RASH_sample_182


title: RASH_sample_180


title: ACCEPT_sample_18


title: RASH_sample_178


title: RASH_sample_179


title: RASH_sample_175


title: ACCEPT_sample_17


title: RASH_sample_170


title: RASH_sample_172


title: RASH_sample_171


title: RASH_sample_206


title: RASH_sample_164


title: RASH_sample_169


title: RASH_sample_163


title: RASH_sample_161


title: RASH_sample_156


title: RASH_sample_157


title: RASH_sample_155


title: RASH_sample_149


title: RASH_sample_191


title: RASH_sample_142


title: RASH_sample_144


title: RASH_sample_146


title: RASH_sample_152


title: RASH_sample_137


title: RASH_sample_136


title: RASH_sample_134


title: ACCEPT_sample_14


title: RASH_sample_132


title: RASH_sample_140


title: RASH_sample_168


title: RASH_sample_131


title: RASH_sample_124


title: RASH_sample_128


title: ACCEPT_sample_12


title: RASH_sample_115


title: RASH_sample_119


title: RASH_sample_126


title: RASH_sample_127


title: RASH_sample_117


title: ACCEPT_sample_114


title: ACCEPT_sample_113


title: ACCEPT_sample_112


title: ACCEPT_sample_111


title: ACCEPT_sample_11


title: RASH_sample_120


title: ACCEPT_sample_103


title: ACCEPT_sample_107


title: ACCEPT_sample_10


title: donor_3399_visceral fat

city: Palo Alto

first: Lattice

last: Data Coordination

state: CA

address: 3165 Porter Drive

department: Genetics

institute: Stanford University

data_processing:
Per sample, reads were transformed into a raw counts matrix with 10x Genomics CellRanger software1 6.0.1
raw_matrix_normalized:False; raw_matrix_value_scale:linear; raw_matrix_feature_keys:gene symbol; raw_matrix_background_barcodes_included:False
Assembly: raw_matrix_assembly:GRCh38; raw_matrix_genome_annotation:GENCODE 32
Supplementary files format and content: raw_matrix_file_format:hdf5; raw_matrix_value_units:UMI

source_name: visceral fat

extract_protocol:
Adipose tissue biopsies with at least 1g  were obtained from adult patients without severe morbid states or obesity complications who had signed in advance a written informed consent before undergoing elective abdominal surgeries. Five patients donated subcutaneous adipose tissue and visceral adipose tissue samples (paired). Tissues were immediately delivered from the operating room to the lab, where they were snap frozen in liquid nitrogen and stored at −80°C.
13,000-16,500 nuclei/sample were  loaded onto 10X Chromium Controller (10X GENOMICS, CA, USA) according to the manufacturer’s protocol (Chromium Next GEM Chip C. Chromium Next GEM Single Cell 3’ Kits v3.1).

value: visceral fat

tag: raw matrix_cellranger_assay_chemistry

tag: assay

value: female

tag: ethnicity

value: Arab

value: 33.5 years

value: TRUE

tag: donor id


title: ACCEPT_sample_109

tag: tissue


title: ACCEPT_sample_106


title: donor_3427_visceral fat

value: male

value: Jewish Israeli

value: 24.5 years


title: ACCEPT_sample_104


title: donor_3382_subcutaneous adipose tissue

source_name: subcutaneous adipose tissue

value: subcutaneous adipose tissue

value: 41.8 years


title: RASH_sample_123


title: donor_4263_visceral fat

value: German

value: 53.4 years


title: donor_3399_subcutaneous adipose tissue


title: donor_3431_visceral fat

value: 48.6 years


title: donor_3384_subcutaneous adipose tissue

value: 33.7 years


title: donor_3427_subcutaneous adipose tissue


title: Pre-IP control THC0915TANN_PRDM5_INPUT3

first: Arttu

last: Jolma

department: Donnelly Centre

data_processing:
Constant flank derived bases were removed with Cutadapt (using the adapters AGATCGGAAGAGCACACGTCTGAACTCCAGTCA and AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT).
Reads were mapped into human genome build hg38 with bowtie2 (options: --very-sensitive, --no-unal). The mapped trimmed reads were filtered using samtools (options: -q 30, -F 1548, version 1.20)
Peak calling was performed with MACS2 using sample-specific backgrounds [made by merging pull-down experiments; PMID: 27852650].
Assembly: hg38
Supplementary files format and content: Bigwig files are based on Bowtie2 mapping followed by MACS3 peak calling.
Supplementary files format and content: Narrowpeak files have been derived following the custom Peak calling was performed with MACS2 using sample-specific backgrounds [made by merging pull-down experiments; PMID: 27852650].

growth_protocol: HEK293 cells were grown and maintained in high glucose DMEM supplemented with 10% FBS. TF cell lines were established via transfection and selection of transfected cells in 200ug/ml of hygromycin in growth media.

extract_protocol:
20 million cells were cross-linked with 1% formaldehyde and palletted in cold PBS. Cell pallettes were lysed in a 3 step lysis procedure and chromatin was sonicated at the last step. Sonicated chromatin ws immunoprecipitated using anti-eGFP IgG (Rabbit polycclonal, abcam290) coated magnetic beads. For "input" control samples, 10ul of pre-IP sample were collected. After de-cross linking and DNA purification, both ChIP and Input samples were eluted in 60ul of elution buffer.
NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® kit and protocol

treatment_protocol: Established TF cell lines were treated with 1ug/ml of doxycycline 24 hours prior to cross linking. The TF expressions were confirmed using fluorescent microscopy and observation of GFP.

tag: hngc symbol_of_the_analyzed_protein

tag: sample type

value: Input

value: No expert curation due to insufficient peak numbers


title: Pre-IP control THC0916TANN_ZNF362_INPUT3


title: ChIP-seq analysis of ANKZF1 genomic target locations in HEK293, THC0912TANR_ANKZF1_ChIP3

value: ChIP


title: ChIP-seq analysis of GPBP1 genomic target locations in HEK293, THC0896TANN_GPBP1_ChIP3


title: Pre-IP control THC0914TANN_ZNF750_INPUT3


title: Pre-IP control THC0913TANN_ZBED2_INPUT3


title: Pre-IP control THC0900TANN_ZNF286B_INPUT1


title: Pre-IP control THC0893TANN_ZNF469_INPUT1


title: Pre-IP control THC0892TANN_FAM200B_INPUT2


title: Pre-IP control THC0848TANN_CTCF_INPUT1

value: CTCF


title: Pre-IP control THC0844TANN_LEF1_INPUT2


title: Pre-IP control THC0845TANN_GFP_INPUT2

value: GFP


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0879TANN_GFP_ChIP1


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0875TANN_GFP_ChIP1


title: Pre-IP control THC0842TANN_VDR_INPUT1

value: VDR


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0874TANN_GFP_ChIP2


title: Pre-IP control THC0753TANN_PLSCR1_INPUT1


title: Pre-IP control THC0843TANN_MYF6_INPUT1


title: Pre-IP control THC0841TANN_SOX2_INPUT2


title: Pre-IP control THC0847TANN_SALL3_INPUT1


title: Pre-IP control THC0846TANN_RAG1_INPUT1


title: Pre-IP control THC0752TANN_NKRF_INPUT1

value: NKRF


title: Pre-IP control THC0749TANN_NFX1_INPUT1


title: Pre-IP control THC0840TANN_SCMH1_INPUT2


title: Pre-IP control THC0849TANN_RLF_INPUT1

value: RLF


title: Pre-IP control THC0751TANN_CHCHD3_INPUT2


title: Pre-IP control THC0650TANN_ZNF788P_INPUT1


title: Pre-IP control THC0651TANN_ZNF814_INPUT1


title: Pre-IP control THC0652TANN_TET3_INPUT2


title: Pre-IP control THC0750TANN_CENPA_INPUT1

value: CENPA


title: Pre-IP control THC0748TANN_PRDM2_INPUT2


title: Pre-IP control THC0747TANN_GFP_INPUT2


title: Pre-IP control THC0746TANN_TTF1_INPUT1


title: Pre-IP control THC0745TANN_TERF1_INPUT1


title: Pre-IP control THC0657TANN_SOX2_INPUT1


title: Pre-IP control THC0656TANN_NFX1_INPUT2


title: Pre-IP control THC0558TANN_ZNF630_INPUT1


title: Pre-IP control THC0560TANN_ZNF678_INPUT1


title: Pre-IP control THC0655TANN_MYPOP_INPUT2

value: MYPOP


title: Pre-IP control THC0556TANN_ZNF518B_INPUT1


title: Pre-IP control THC0654TANN_MTERF2_INPUT1


title: Pre-IP control THC0653TANN_HSFX1_INPUT2


title: Pre-IP control THC0649TANN_ZNF773_INPUT2


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0463TANM_GFP_ChIP1


title: Pre-IP control THC0561TANN_ZNF687_INPUT1


title: Pre-IP control THC0648TANN_ZNF688_INPUT2


title: Pre-IP control THC0555TANN_ZNF131_INPUT2


title: Pre-IP control THC0554TANN_PRDM2_INPUT1


title: Pre-IP control THC0557TANN_ZNF568_INPUT2


title: Pre-IP control THC0436TANM_TIGD4_INPUT1


title: Pre-IP control THC0464TANM_RLF_INPUT1


title: Pre-IP control THC0553TANN_GFP_INPUT1


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0479TANN_GFP_ChIP2


title: Pre-IP control THC0443TANM_CTCF_INPUT1


title: Pre-IP control THC0559TANN_ZNF665_INPUT2


title: Pre-IP control THC0450TANM_SALL3_INPUT1


title: Pre-IP control THC0457TANM_ZNF750_INPUT1


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0321TANM_GFP_ChIP2


title: Pre-IP control THC0400TANM_PRMT3_INPUT2


title: Pre-IP control THC0443TAND_CTCF_INPUT1


title: Pre-IP control THC0429TANM_ZNF215_INPUT1


title: Pre-IP control THC0384TANM_YY1_INPUT2


title: Pre-IP control THC0392TANM_GFP_INPUT2


title: Pre-IP control THC0464TAND_RLF_INPUT1


title: Pre-IP control THC0450TAND_SALL3_INPUT1


title: Pre-IP control THC0415TANM_ZUP1_INPUT2


title: Pre-IP control THC0436TAND_TIGD4_INPUT1


title: Pre-IP control THC0422TAND_ZNF326_INPUT2


title: Pre-IP control THC0408TAND_ZNF107_INPUT2


title: Pre-IP control THC0457TAND_ZNF750_INPUT1


title: Pre-IP control THC0415TAND_ZUP1_INPUT2


title: Pre-IP control THC0429TAND_ZNF215_INPUT1


title: Pre-IP control THC0408TANM_ZNF107_INPUT2


title: Pre-IP control THC0422TANM_ZNF326_INPUT2


title: Pre-IP control THC0384TAND_YY1_INPUT2


title: Pre-IP control THC0392TAND_GFP_INPUT2


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0321TAND_GFP_ChIP2


title: Pre-IP control THC0270TANN_ZNF446_INPUT2


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0463TAND_GFP_ChIP1


title: Pre-IP control THC0269TANN_KIN_INPUT2

value: KIN


title: Pre-IP control THC0268TANN_NCOA1_INPUT2


title: Pre-IP control THC0267TANN_ATMIN_INPUT2

value: ATMIN


title: Pre-IP control THC0265TANN_PRDM13_INPUT2


title: Pre-IP control THC0266TANN_CAMTA2_INPUT2


title: Pre-IP control THC0264TANN_PRDM13_INPUT1


title: Pre-IP control THC0262TANN_ZBED5_INPUT1


title: ChIP-seq analysis of TIGD5 genomic target locations in HEK293, THC0182TANN_TIGD5_ChIP1


title: Pre-IP control THC0263TANN_AHCTF1_INPUT1


title: Pre-IP control THC0256TANN_KIN_INPUT1


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0260TANN_GFP_ChIP2


title: Pre-IP control THC0400TAND_PRMT3_INPUT2


title: Pre-IP control THC0127TANN_SNAPC2_INPUT2


title: Pre-IP control THC0124TANN_ANKZF1_INPUT1


title: Pre-IP control THC0129TANN_ZBED9_INPUT1


title: Pre-IP control THC0128TANN_TIGD5_INPUT2


title: Pre-IP control THC0255TANN_POGK_INPUT1

value: POGK


title: ChIP-seq analysis of GFP genomic target locations in HEK293, THC0252TANN_GFP_ChIP1


title: Pre-IP control THC0125TANN_TIGD3_INPUT1


title: Pre-IP control THC0097TANN_TERB1_INPUT2


title: Pre-IP control THC0122TANN_RFX8_INPUT2


title: Pre-IP control THC0123TANN_AKAP8L_INPUT1


title: Pre-IP control THC0089TANN_ZNF428_INPUT1


title: Pre-IP control THC0126TANN_SGSM2_INPUT1


title: Pre-IP control THC0098TANN_DNTTIP1_INPUT2


title: Pre-IP control THC0096TANN_THYN1_INPUT2


title: ChIP-seq analysis of ZNF347 genomic target locations in HEK293, THC0908TANR_ZNF347_ChIP3

value: Approved


title: Pre-IP control THC0093TANN_AC008770_INPUT1


title: ChIP-seq analysis of ZXDC genomic target locations in HEK293, THC0907TANR_ZXDC_ChIP3

value: ZXDC


title: ChIP-seq analysis of ZNF446 genomic target locations in HEK293, THC0906TANR_ZNF446_ChIP3


title: Pre-IP control THC0094TANN_ZNF428_INPUT2


title: Pre-IP control THC0095TANN_YY1_INPUT2


title: ChIP-seq analysis of ZXDA genomic target locations in HEK293, THC0911TANR_ZXDA_ChIP3

value: ZXDA


title: ChIP-seq analysis of ZBTB8B genomic target locations in HEK293, THC0143TANN_ZBTB8B_ChIP1


title: ChIP-seq analysis of ZSCAN12 genomic target locations in HEK293, THC0903TANR_ZSCAN12_ChIP3


title: Pre-IP control THC0091TANN_THAP11_INPUT1


title: ChIP-seq analysis of ZNF14 genomic target locations in HEK293, THC0901TANR_ZNF14_ChIP3


title: ChIP-seq analysis of ZNF606 genomic target locations in HEK293, THC0905TANR_ZNF606_ChIP3


title: ChIP-seq analysis of ZNF362 genomic target locations in HEK293, THC0910TANR_ZNF362_ChIP3

value: Not approved


title: ChIP-seq analysis of ZNF286B genomic target locations in HEK293, THC0899TANN_ZNF286B_ChIP2


title: ChIP-seq analysis of PRDM5 genomic target locations in HEK293, THC0904TANR_PRDM5_ChIP3


title: ChIP-seq analysis of ZNF493 genomic target locations in HEK293, THC0891TANR_ZNF493_ChIP3


title: ChIP-seq analysis of ZNF286B genomic target locations in HEK293, THC0898TANN_ZNF286B_ChIP1


title: ChIP-seq analysis of ZNF750 genomic target locations in HEK293, THC0909TANR_ZNF750_ChIP3


title: ChIP-seq analysis of ZNF207 genomic target locations in HEK293, THC0888TANR_ZNF207_ChIP3


title: ChIP-seq analysis of FAM200B genomic target locations in HEK293, THC0887TANN_FAM200B_ChIP2


title: ChIP-seq analysis of ZSCAN2 genomic target locations in HEK293, THC0885TANR_ZSCAN2_ChIP3


title: ChIP-seq analysis of ZNF469 genomic target locations in HEK293, THC0883TANN_ZNF469_ChIP2


title: ChIP-seq analysis of ZBED2 genomic target locations in HEK293, THC0902TANR_ZBED2_ChIP3


title: ChIP-seq analysis of FAM200B genomic target locations in HEK293, THC0886TANN_FAM200B_ChIP1


title: ChIP-seq analysis of ZNF280D genomic target locations in HEK293, THC0895TANN_ZNF280D_ChIP1


title: ChIP-seq analysis of ZNF471 genomic target locations in HEK293, THC0884TANR_ZNF471_ChIP3


title: ChIP-seq analysis of ZNF469 genomic target locations in HEK293, THC0882TANN_ZNF469_ChIP1


title: ChIP-seq analysis of ZNF358 genomic target locations in HEK293, THC0881TANR_ZNF358_ChIP3


title: ChIP-seq analysis of ZNF233 genomic target locations in HEK293, THC0880TANR_ZNF233_ChIP3


title: ChIP-seq analysis of ZNF536 genomic target locations in HEK293, THC0897TANN_ZNF536_ChIP3


title: ChIP-seq analysis of ZNF536 genomic target locations in HEK293, THC0876TANN_ZNF536_ChIP1


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0878TANN_YY1_ChIP2


title: ChIP-seq analysis of ZNF700 genomic target locations in HEK293, THC0872TANN_ZNF700_ChIP2


title: ChIP-seq analysis of GPBP1 genomic target locations in HEK293, THC0877TANN_GPBP1_ChIP1


title: ChIP-seq analysis of JUN genomic target locations in HEK293, THC0871TANN_JUN_ChIP1

value: JUN


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0867TANN_CTCF_ChIP2


title: ChIP-seq analysis of JUN genomic target locations in HEK293, THC0869TANN_JUN_ChIP2


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0865TANN_CTCF_ChIP1


title: ChIP-seq analysis of FLI1 genomic target locations in HEK293, THC0868TANN_FLI1_ChIP1


title: ChIP-seq analysis of FLI1 genomic target locations in HEK293, THC0870TANN_FLI1_ChIP2


title: ChIP-seq analysis of GABPA genomic target locations in HEK293, THC0864TANN_GABPA_ChIP1

value: GABPA


title: ChIP-seq analysis of ZNF234 genomic target locations in HEK293, THC0890TANR_ZNF234_ChIP3

value: ChIP


title: ChIP-seq analysis of ZNF230 genomic target locations in HEK293, THC0889TANR_ZNF230_ChIP3


title: ChIP-seq analysis of BAZ2A genomic target locations in HEK293, THC0862TANN_BAZ2A_ChIP1

value: No expert curation due to insufficient peak numbers


title: ChIP-seq analysis of MTERF2 genomic target locations in HEK293, THC0861TANN_MTERF2_ChIP1


title: ChIP-seq analysis of MBD1 genomic target locations in HEK293, THC0856TANN_MBD1_ChIP1


title: ChIP-seq analysis of ZXDB genomic target locations in HEK293, THC0853TANN_ZXDB_ChIP2

value: ZXDB


title: ChIP-seq analysis of MTERF4 genomic target locations in HEK293, THC0859TANN_MTERF4_ChIP2


title: ChIP-seq analysis of BAZ2A genomic target locations in HEK293, THC0860TANN_BAZ2A_ChIP2


title: ChIP-seq analysis of ZNF92 genomic target locations in HEK293, THC0854TANN_ZNF92_ChIP1


title: ChIP-seq analysis of ZNF700 genomic target locations in HEK293, THC0873TANR_ZNF700_ChIP3


title: ChIP-seq analysis of MBD1 genomic target locations in HEK293, THC0858TANN_MBD1_ChIP1


title: ChIP-seq analysis of ZNF92 genomic target locations in HEK293, THC0855TANN_ZNF92_ChIP2


title: ChIP-seq analysis of MTERF4 genomic target locations in HEK293, THC0857TANN_MTERF4_ChIP1


title: ChIP-seq analysis of GABPA genomic target locations in HEK293, THC0866TANN_GABPA_ChIP2


title: ChIP-seq analysis of ZNF888 genomic target locations in HEK293, THC0852TANN_ZNF888_ChIP2


title: ChIP-seq analysis of ZNF888 genomic target locations in HEK293, THC0850TANN_ZNF888_ChIP1


title: ChIP-seq analysis of SKI genomic target locations in HEK293, THC0839TANN_SKI_ChIP1

value: SKI


title: ChIP-seq analysis of ZXDB genomic target locations in HEK293, THC0851TANN_ZXDB_ChIP1


title: ChIP-seq analysis of PLSCR1 genomic target locations in HEK293, THC0835TANN_PLSCR1_ChIP2


title: ChIP-seq analysis of RBCK1 genomic target locations in HEK293, THC0837TANN_RBCK1_ChIP2


title: ChIP-seq analysis of SKIL genomic target locations in HEK293, THC0838TANN_SKIL_ChIP1

value: SKIL


title: ChIP-seq analysis of PA2G4 genomic target locations in HEK293, THC0833TANN_PA2G4_ChIP2


title: ChIP-seq analysis of KCNIP3 genomic target locations in HEK293, THC0832TANN_KCNIP3_ChIP2


title: ChIP-seq analysis of PURB genomic target locations in HEK293, THC0836TANN_PURB_ChIP1

value: PURB


title: ChIP-seq analysis of MTERF2 genomic target locations in HEK293, THC0863TANN_MTERF2_ChIP2


title: ChIP-seq analysis of DRAP1 genomic target locations in HEK293, THC0830TANN_DRAP1_ChIP2


title: ChIP-seq analysis of DACH2 genomic target locations in HEK293, THC0829TANN_DACH2_ChIP2


title: ChIP-seq analysis of PCGF6 genomic target locations in HEK293, THC0834TANN_PCGF6_ChIP2


title: ChIP-seq analysis of CENPX genomic target locations in HEK293, THC0826TANN_CENPX_ChIP2

value: CENPX


title: ChIP-seq analysis of CENPS genomic target locations in HEK293, THC0825TANN_CENPS_ChIP2

value: CENPS


title: ChIP-seq analysis of CC2D1A genomic target locations in HEK293, THC0824TANN_CC2D1A_ChIP1


title: ChIP-seq analysis of CSRNP1 genomic target locations in HEK293, THC0827TANN_CSRNP1_ChIP2


title: ChIP-seq analysis of THAP6 genomic target locations in HEK293, THC0821TANN_THAP6_ChIP2


title: ChIP-seq analysis of LEF1 genomic target locations in HEK293, THC0818TANN_LEF1_ChIP2


title: ChIP-seq analysis of THAP4 genomic target locations in HEK293, THC0820TANN_THAP4_ChIP2


title: ChIP-seq analysis of PAX7 genomic target locations in HEK293, THC0815TANN_PAX7_ChIP2


title: ChIP-seq analysis of CSRNP3 genomic target locations in HEK293, THC0828TANN_CSRNP3_ChIP2


title: ChIP-seq analysis of MAX genomic target locations in HEK293, THC0816TANN_MAX_ChIP2

value: MAX


title: ChIP-seq analysis of MGA genomic target locations in HEK293, THC0819TANN_MGA_ChIP1

value: MGA


title: ChIP-seq analysis of RARA genomic target locations in HEK293, THC0814TANN_RARA_ChIP2

value: RARA


title: ChIP-seq analysis of JUNB genomic target locations in HEK293, THC0811TANN_JUNB_ChIP2

value: JUNB

value: Approved


title: ChIP-seq analysis of SP100 genomic target locations in HEK293, THC0809TANN_SP100_ChIP1


title: ChIP-seq analysis of THAP8 genomic target locations in HEK293, THC0822TANN_THAP8_ChIP2


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0831TANN_YY1_ChIP1


title: ChIP-seq analysis of RORB genomic target locations in HEK293, THC0813TANN_RORB_ChIP2

value: RORB


title: ChIP-seq analysis of VDR genomic target locations in HEK293, THC0812TANN_VDR_ChIP2

value: VDR


title: ChIP-seq analysis of AEBP1 genomic target locations in HEK293, THC0823TANN_AEBP1_ChIP1


title: ChIP-seq analysis of TERF1 genomic target locations in HEK293, THC0807TANN_TERF1_ChIP2


title: ChIP-seq analysis of MBD6 genomic target locations in HEK293, THC0803TANN_MBD6_ChIP1


title: ChIP-seq analysis of MBD3 genomic target locations in HEK293, THC0802TANN_MBD3_ChIP1


title: ChIP-seq analysis of MYPOP genomic target locations in HEK293, THC0806TANN_MYPOP_ChIP1

value: MYPOP


title: ChIP-seq analysis of MYRFL genomic target locations in HEK293, THC0808TANN_MYRFL_ChIP2

value: MYRFL


title: ChIP-seq analysis of HSFX2 genomic target locations in HEK293, THC0801TANN_HSFX2_ChIP1

value: ChIP

value: Not approved


title: ChIP-seq analysis of SETDB2 genomic target locations in HEK293, THC0804TANN_SETDB2_ChIP1

value: No expert curation due to insufficient peak numbers


title: ChIP-seq analysis of DMTF1 genomic target locations in HEK293, THC0805TANN_DMTF1_ChIP2


title: ChIP-seq analysis of SOX2 genomic target locations in HEK293, THC0810TANN_SOX2_ChIP2


title: ChIP-seq analysis of POU5F2 genomic target locations in HEK293, THC0800TANN_POU5F2_ChIP2


title: ChIP-seq analysis of TET3 genomic target locations in HEK293, THC0799TANN_TET3_ChIP1


title: ChIP-seq analysis of ZNF850 genomic target locations in HEK293, THC0797TANN_ZNF850_ChIP2


title: ChIP-seq analysis of ZNF844 genomic target locations in HEK293, THC0796TANN_ZNF844_ChIP2


title: ChIP-seq analysis of MYF6 genomic target locations in HEK293, THC0817TANN_MYF6_ChIP1


title: ChIP-seq analysis of ZNF836 genomic target locations in HEK293, THC0795TANN_ZNF836_ChIP2


title: ChIP-seq analysis of ZNF804A genomic target locations in HEK293, THC0793TANN_ZNF804A_ChIP2


title: ChIP-seq analysis of ZNF83 genomic target locations in HEK293, THC0794TANN_ZNF83_ChIP2


title: ChIP-seq analysis of ZNF788P genomic target locations in HEK293, THC0792TANN_ZNF788P_ChIP2


title: ChIP-seq analysis of ZNF775 genomic target locations in HEK293, THC0789TANN_ZNF775_ChIP1


title: ChIP-seq analysis of ZNF746 genomic target locations in HEK293, THC0787TANN_ZNF746_ChIP1


title: ChIP-seq analysis of ZNF772 genomic target locations in HEK293, THC0788TANN_ZNF772_ChIP2


title: ChIP-seq analysis of ZNF724 genomic target locations in HEK293, THC0785TANN_ZNF724_ChIP2


title: ChIP-seq analysis of ZNF717 genomic target locations in HEK293, THC0791TANN_ZNF717_ChIP2


title: ChIP-seq analysis of ZNF721 genomic target locations in HEK293, THC0784TANN_ZNF721_ChIP2


title: ChIP-seq analysis of ZNF878 genomic target locations in HEK293, THC0798TANN_ZNF878_ChIP2


title: ChIP-seq analysis of ZNF705E genomic target locations in HEK293, THC0783TANN_ZNF705E_ChIP2


title: ChIP-seq analysis of ZNF70 genomic target locations in HEK293, THC0782TANN_ZNF70_ChIP1


title: ChIP-seq analysis of ZNF66 genomic target locations in HEK293, THC0776TANN_ZNF66_ChIP1


title: ChIP-seq analysis of ZNF668 genomic target locations in HEK293, THC0777TANN_ZNF668_ChIP1


title: ChIP-seq analysis of ZNF676 genomic target locations in HEK293, THC0778TANN_ZNF676_ChIP1


title: ChIP-seq analysis of ZNF623 genomic target locations in HEK293, THC0773TANN_ZNF623_ChIP1


title: ChIP-seq analysis of ZNF592 genomic target locations in HEK293, THC0771TANN_ZNF592_ChIP1


title: ChIP-seq analysis of ZNF639 genomic target locations in HEK293, THC0774TANN_ZNF639_ChIP1


title: ChIP-seq analysis of ZNF696 genomic target locations in HEK293, THC0781TANN_ZNF696_ChIP1


title: ChIP-seq analysis of ZNF608 genomic target locations in HEK293, THC0772TANN_ZNF608_ChIP1


title: ChIP-seq analysis of ZNF569 genomic target locations in HEK293, THC0768TANN_ZNF569_ChIP2


title: ChIP-seq analysis of ZNF575 genomic target locations in HEK293, THC0769TANN_ZNF575_ChIP2


title: ChIP-seq analysis of ZNF683 genomic target locations in HEK293, THC0779TANN_ZNF683_ChIP1


title: ChIP-seq analysis of ZNF551 genomic target locations in HEK293, THC0767TANN_ZNF551_ChIP1


title: ChIP-seq analysis of ZNF579 genomic target locations in HEK293, THC0770TANN_ZNF579_ChIP2


title: ChIP-seq analysis of ZNF781 genomic target locations in HEK293, THC0790TANN_ZNF781_ChIP1


title: ChIP-seq analysis of ZNF728 genomic target locations in HEK293, THC0786TANN_ZNF728_ChIP1


title: ChIP-seq analysis of ZNF407 genomic target locations in HEK293, THC0764TANN_ZNF407_ChIP2


title: ChIP-seq analysis of ZNF518B genomic target locations in HEK293, THC0765TANN_ZNF518B_ChIP1


title: ChIP-seq analysis of ZNF648 genomic target locations in HEK293, THC0775TANN_ZNF648_ChIP1


title: ChIP-seq analysis of ZNF688 genomic target locations in HEK293, THC0780TANN_ZNF688_ChIP1


title: ChIP-seq analysis of ZNF292 genomic target locations in HEK293, THC0763TANN_ZNF292_ChIP1


title: ChIP-seq analysis of TSHZ2 genomic target locations in HEK293, THC0761TANN_TSHZ2_ChIP1


title: ChIP-seq analysis of MYT1 genomic target locations in HEK293, THC0760TANN_MYT1_ChIP2


title: ChIP-seq analysis of ZKSCAN4 genomic target locations in HEK293, THC0762TANN_ZKSCAN4_ChIP1


title: ChIP-seq analysis of KAT7 genomic target locations in HEK293, THC0759TANN_KAT7_ChIP2


title: ChIP-seq analysis of AHDC1 genomic target locations in HEK293, THC0756TANN_AHDC1_ChIP1


title: ChIP-seq analysis of FIZ1 genomic target locations in HEK293, THC0758TANN_FIZ1_ChIP2


title: ChIP-seq analysis of USF3 genomic target locations in HEK293, THC0757TANN_USF3_ChIP1


title: ChIP-seq analysis of CBX2 genomic target locations in HEK293, THC0755TANN_CBX2_ChIP1


title: ChIP-seq analysis of PREB genomic target locations in HEK293, THC0740TANN_PREB_ChIP2

value: PREB


title: ChIP-seq analysis of NKRF genomic target locations in HEK293, THC0737TANN_NKRF_ChIP1

value: NKRF


title: ChIP-seq analysis of SCMH1 genomic target locations in HEK293, THC0742TANN_SCMH1_ChIP2


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0744TANN_CTCF_ChIP1

value: CTCF


title: ChIP-seq analysis of PCGF2 genomic target locations in HEK293, THC0738TANN_PCGF2_ChIP1


title: ChIP-seq analysis of GLMP genomic target locations in HEK293, THC0735TANN_GLMP_ChIP1

value: GLMP


title: ChIP-seq analysis of GPBP1L1 genomic target locations in HEK293, THC0736TANN_GPBP1L1_ChIP1


title: ChIP-seq analysis of PURG genomic target locations in HEK293, THC0741TANN_PURG_ChIP2

value: PURG


title: ChIP-seq analysis of RAG1 genomic target locations in HEK293, THC0743TANN_RAG1_ChIP2


title: ChIP-seq analysis of DACH1 genomic target locations in HEK293, THC0733TANN_DACH1_ChIP2


title: ChIP-seq analysis of CGGBP1 genomic target locations in HEK293, THC0731TANN_CGGBP1_ChIP1


title: ChIP-seq analysis of DR1 genomic target locations in HEK293, THC0734TANN_DR1_ChIP2


title: ChIP-seq analysis of CSRNP2 genomic target locations in HEK293, THC0732TANN_CSRNP2_ChIP1


title: ChIP-seq analysis of ZNF532 genomic target locations in HEK293, THC0766TANN_ZNF532_ChIP1


title: ChIP-seq analysis of CENPT genomic target locations in HEK293, THC0730TANN_CENPT_ChIP1

value: CENPT


title: ChIP-seq analysis of CENPA genomic target locations in HEK293, THC0729TANN_CENPA_ChIP1

value: CENPA


title: ChIP-seq analysis of BRF2 genomic target locations in HEK293, THC0728TANN_BRF2_ChIP2


title: ChIP-seq analysis of THAP9 genomic target locations in HEK293, THC0727TANN_THAP9_ChIP2


title: ChIP-seq analysis of DOT1L genomic target locations in HEK293, THC0754TANN_DOT1L_ChIP1


title: ChIP-seq analysis of PHF19 genomic target locations in HEK293, THC0739TANN_PHF19_ChIP2


title: ChIP-seq analysis of THAP8 genomic target locations in HEK293, THC0726TANN_THAP8_ChIP1


title: ChIP-seq analysis of THAP6 genomic target locations in HEK293, THC0725TANN_THAP6_ChIP1


title: ChIP-seq analysis of THAP4 genomic target locations in HEK293, THC0724TANN_THAP4_ChIP1


title: ChIP-seq analysis of LEF1 genomic target locations in HEK293, THC0722TANN_LEF1_ChIP1


title: ChIP-seq analysis of MGA genomic target locations in HEK293, THC0723TANN_MGA_ChIP2

value: MGA


title: ChIP-seq analysis of MYF6 genomic target locations in HEK293, THC0721TANN_MYF6_ChIP2


title: ChIP-seq analysis of MAX genomic target locations in HEK293, THC0720TANN_MAX_ChIP1

value: MAX


title: ChIP-seq analysis of RARA genomic target locations in HEK293, THC0718TANN_RARA_ChIP1

value: RARA


title: ChIP-seq analysis of VDR genomic target locations in HEK293, THC0716TANN_VDR_ChIP1

value: Approved


title: ChIP-seq analysis of PAX7 genomic target locations in HEK293, THC0719TANN_PAX7_ChIP1


title: ChIP-seq analysis of JUNB genomic target locations in HEK293, THC0715TANN_JUNB_ChIP1

value: JUNB


title: ChIP-seq analysis of SP100 genomic target locations in HEK293, THC0713TANN_SP100_ChIP2


title: ChIP-seq analysis of SOX2 genomic target locations in HEK293, THC0714TANN_SOX2_ChIP1


title: ChIP-seq analysis of TERF1 genomic target locations in HEK293, THC0711TANN_TERF1_ChIP1


title: ChIP-seq analysis of SETDB2 genomic target locations in HEK293, THC0708TANN_SETDB2_ChIP2


title: ChIP-seq analysis of DMTF1 genomic target locations in HEK293, THC0709TANN_DMTF1_ChIP1


title: ChIP-seq analysis of MYPOP genomic target locations in HEK293, THC0710TANN_MYPOP_ChIP2

value: MYPOP


title: ChIP-seq analysis of MBD6 genomic target locations in HEK293, THC0707TANN_MBD6_ChIP2


title: ChIP-seq analysis of MBD3 genomic target locations in HEK293, THC0706TANN_MBD3_ChIP2


title: ChIP-seq analysis of HSFX2 genomic target locations in HEK293, THC0705TANN_HSFX2_ChIP2


title: ChIP-seq analysis of POU5F2 genomic target locations in HEK293, THC0704TANN_POU5F2_ChIP1


title: ChIP-seq analysis of ZNF850 genomic target locations in HEK293, THC0701TANN_ZNF850_ChIP1


title: ChIP-seq analysis of ZNF844 genomic target locations in HEK293, THC0700TANN_ZNF844_ChIP1


title: ChIP-seq analysis of ZNF804A genomic target locations in HEK293, THC0697TANN_ZNF804A_ChIP1


title: ChIP-seq analysis of TET3 genomic target locations in HEK293, THC0703TANN_TET3_ChIP2


title: ChIP-seq analysis of ZNF878 genomic target locations in HEK293, THC0702TANN_ZNF878_ChIP1


title: ChIP-seq analysis of ZNF717 genomic target locations in HEK293, THC0695TANN_ZNF717_ChIP1


title: ChIP-seq analysis of ZNF788P genomic target locations in HEK293, THC0696TANN_ZNF788P_ChIP1


title: ChIP-seq analysis of ZNF775 genomic target locations in HEK293, THC0693TANN_ZNF775_ChIP2


title: ChIP-seq analysis of ZNF836 genomic target locations in HEK293, THC0699TANN_ZNF836_ChIP1


title: ChIP-seq analysis of ZNF781 genomic target locations in HEK293, THC0694TANN_ZNF781_ChIP2


title: ChIP-seq analysis of ZNF746 genomic target locations in HEK293, THC0691TANN_ZNF746_ChIP2


title: ChIP-seq analysis of ZNF728 genomic target locations in HEK293, THC0690TANN_ZNF728_ChIP2


title: ChIP-seq analysis of RORB genomic target locations in HEK293, THC0717TANN_RORB_ChIP1

value: RORB


title: ChIP-seq analysis of ZNF683 genomic target locations in HEK293, THC0683TANN_ZNF683_ChIP2

value: ChIP


title: ChIP-seq analysis of ZNF676 genomic target locations in HEK293, THC0682TANN_ZNF676_ChIP2


title: ChIP-seq analysis of ZNF688 genomic target locations in HEK293, THC0684TANN_ZNF688_ChIP2

value: Not approved


title: ChIP-seq analysis of ZNF724 genomic target locations in HEK293, THC0689TANN_ZNF724_ChIP1


title: ChIP-seq analysis of ZNF705E genomic target locations in HEK293, THC0687TANN_ZNF705E_ChIP1


title: ChIP-seq analysis of ZNF668 genomic target locations in HEK293, THC0681TANN_ZNF668_ChIP2

value: No expert curation due to insufficient peak numbers


title: ChIP-seq analysis of ZNF648 genomic target locations in HEK293, THC0679TANN_ZNF648_ChIP2


title: ChIP-seq analysis of ZNF66 genomic target locations in HEK293, THC0680TANN_ZNF66_ChIP2


title: ChIP-seq analysis of ZNF608 genomic target locations in HEK293, THC0676TANN_ZNF608_ChIP2


title: ChIP-seq analysis of ZNF721 genomic target locations in HEK293, THC0688TANN_ZNF721_ChIP3


title: ChIP-seq analysis of ZNF592 genomic target locations in HEK293, THC0675TANN_ZNF592_ChIP2


title: ChIP-seq analysis of ZNF70 genomic target locations in HEK293, THC0686TANN_ZNF70_ChIP2


title: ChIP-seq analysis of ZNF623 genomic target locations in HEK293, THC0677TANN_ZNF623_ChIP2


title: ChIP-seq analysis of ZNF639 genomic target locations in HEK293, THC0678TANN_ZNF639_ChIP2


title: ChIP-seq analysis of ZNF579 genomic target locations in HEK293, THC0674TANN_ZNF579_ChIP1


title: ChIP-seq analysis of ZNF83 genomic target locations in HEK293, THC0698TANN_ZNF83_ChIP1


title: ChIP-seq analysis of ZNF772 genomic target locations in HEK293, THC0692TANN_ZNF772_ChIP1


title: ChIP-seq analysis of ZNF575 genomic target locations in HEK293, THC0673TANN_ZNF575_ChIP1


title: ChIP-seq analysis of ZNF569 genomic target locations in HEK293, THC0672TANN_ZNF569_ChIP1


title: ChIP-seq analysis of ZNF292 genomic target locations in HEK293, THC0667TANN_ZNF292_ChIP2


title: ChIP-seq analysis of ZNF407 genomic target locations in HEK293, THC0668TANN_ZNF407_ChIP1


title: ChIP-seq analysis of ZNF518B genomic target locations in HEK293, THC0669TANN_ZNF518B_ChIP2


title: ChIP-seq analysis of TSHZ2 genomic target locations in HEK293, THC0665TANN_TSHZ2_ChIP2


title: ChIP-seq analysis of ZNF532 genomic target locations in HEK293, THC0670TANN_ZNF532_ChIP2


title: ChIP-seq analysis of ZKSCAN4 genomic target locations in HEK293, THC0666TANN_ZKSCAN4_ChIP2


title: ChIP-seq analysis of KAT7 genomic target locations in HEK293, THC0663TANN_KAT7_ChIP1


title: ChIP-seq analysis of MYT1 genomic target locations in HEK293, THC0664TANN_MYT1_ChIP1


title: ChIP-seq analysis of ZNF696 genomic target locations in HEK293, THC0685TANN_ZNF696_ChIP2


title: ChIP-seq analysis of ZNF551 genomic target locations in HEK293, THC0671TANN_ZNF551_ChIP2


title: ChIP-seq analysis of AHDC1 genomic target locations in HEK293, THC0660TANN_AHDC1_ChIP2


title: ChIP-seq analysis of DOT1L genomic target locations in HEK293, THC0658TANN_DOT1L_ChIP2


title: ChIP-seq analysis of FIZ1 genomic target locations in HEK293, THC0662TANN_FIZ1_ChIP1


title: ChIP-seq analysis of SCMH1 genomic target locations in HEK293, THC0646TANN_SCMH1_ChIP1


title: ChIP-seq analysis of USF3 genomic target locations in HEK293, THC0661TANN_USF3_ChIP2


title: ChIP-seq analysis of PHF19 genomic target locations in HEK293, THC0643TANN_PHF19_ChIP1


title: ChIP-seq analysis of PREB genomic target locations in HEK293, THC0644TANN_PREB_ChIP1

value: PREB


title: ChIP-seq analysis of PCGF2 genomic target locations in HEK293, THC0642TANN_PCGF2_ChIP2


title: ChIP-seq analysis of RAG1 genomic target locations in HEK293, THC0647TANN_RAG1_ChIP1


title: ChIP-seq analysis of PURG genomic target locations in HEK293, THC0645TANN_PURG_ChIP1


title: ChIP-seq analysis of GLMP genomic target locations in HEK293, THC0639TANN_GLMP_ChIP2


title: ChIP-seq analysis of NKRF genomic target locations in HEK293, THC0641TANN_NKRF_ChIP2

value: NKRF


title: ChIP-seq analysis of GPBP1L1 genomic target locations in HEK293, THC0640TANN_GPBP1L1_ChIP2


title: ChIP-seq analysis of DACH1 genomic target locations in HEK293, THC0637TANN_DACH1_ChIP1


title: ChIP-seq analysis of CSRNP2 genomic target locations in HEK293, THC0636TANN_CSRNP2_ChIP2


title: ChIP-seq analysis of CGGBP1 genomic target locations in HEK293, THC0635TANN_CGGBP1_ChIP2


title: ChIP-seq analysis of CENPA genomic target locations in HEK293, THC0633TANN_CENPA_ChIP2


title: ChIP-seq analysis of CENPT genomic target locations in HEK293, THC0634TANN_CENPT_ChIP2


title: ChIP-seq analysis of BRF2 genomic target locations in HEK293, THC0632TANN_BRF2_ChIP1


title: ChIP-seq analysis of THAP9 genomic target locations in HEK293, THC0631TANN_THAP9_ChIP2


title: ChIP-seq analysis of THAP7 genomic target locations in HEK293, THC0630TANN_THAP7_ChIP2


title: ChIP-seq analysis of CBX2 genomic target locations in HEK293, THC0659TANN_CBX2_ChIP2


title: ChIP-seq analysis of THAP5 genomic target locations in HEK293, THC0629TANN_THAP5_ChIP2


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0627TANN_YY1_ChIP2


title: ChIP-seq analysis of NFKB1 genomic target locations in HEK293, THC0624TANN_NFKB1_ChIP2


title: ChIP-seq analysis of SRY genomic target locations in HEK293, THC0625TANN_SRY_ChIP2

value: SRY


title: ChIP-seq analysis of THAP10 genomic target locations in HEK293, THC0628TANN_THAP10_ChIP2


title: ChIP-seq analysis of DR1 genomic target locations in HEK293, THC0638TANN_DR1_ChIP1


title: ChIP-seq analysis of FOSL2 genomic target locations in HEK293, THC0619TANN_FOSL2_ChIP2


title: ChIP-seq analysis of LHX6 genomic target locations in HEK293, THC0620TANN_LHX6_ChIP2


title: ChIP-seq analysis of RXRA genomic target locations in HEK293, THC0622TANN_RXRA_ChIP2

value: RXRA


title: ChIP-seq analysis of NR1H4 genomic target locations in HEK293, THC0623TANN_NR1H4_ChIP2


title: ChIP-seq analysis of SOX15 genomic target locations in HEK293, THC0618TANN_SOX15_ChIP2


title: ChIP-seq analysis of NFX1 genomic target locations in HEK293, THC0617TANN_NFX1_ChIP2


title: ChIP-seq analysis of GCM1 genomic target locations in HEK293, THC0621TANN_GCM1_ChIP2


title: ChIP-seq analysis of MYSM1 genomic target locations in HEK293, THC0615TANN_MYSM1_ChIP2


title: ChIP-seq analysis of TTF1 genomic target locations in HEK293, THC0616TANN_TTF1_ChIP2


title: ChIP-seq analysis of PIN1 genomic target locations in HEK293, THC0612TANN_PIN1_ChIP2


title: ChIP-seq analysis of MBD4 genomic target locations in HEK293, THC0611TANN_MBD4_ChIP1


title: ChIP-seq analysis of MSANTD4 genomic target locations in HEK293, THC0614TANN_MSANTD4_ChIP1


title: ChIP-seq analysis of ZGPAT genomic target locations in HEK293, THC0607TANN_ZGPAT_ChIP1

value: ZGPAT


title: ChIP-seq analysis of HSFX1 genomic target locations in HEK293, THC0609TANN_HSFX1_ChIP2


title: ChIP-seq analysis of GATAD2A genomic target locations in HEK293, THC0608TANN_GATAD2A_ChIP1


title: ChIP-seq analysis of MSANTD1 genomic target locations in HEK293, THC0610TANN_MSANTD1_ChIP1


title: ChIP-seq analysis of ZNF865 genomic target locations in HEK293, THC0606TANN_ZNF865_ChIP2


title: ChIP-seq analysis of POU5F1 genomic target locations in HEK293, THC0626TANN_POU5F1_ChIP2


title: ChIP-seq analysis of ZNF845 genomic target locations in HEK293, THC0605TANN_ZNF845_ChIP2


title: ChIP-seq analysis of ZNF841 genomic target locations in HEK293, THC0604TANN_ZNF841_ChIP2


title: ChIP-seq analysis of ZNF831 genomic target locations in HEK293, THC0603TANN_ZNF831_ChIP2


title: ChIP-seq analysis of ZNF800 genomic target locations in HEK293, THC0601TANN_ZNF800_ChIP2


title: ChIP-seq analysis of ZNF814 genomic target locations in HEK293, THC0602TANN_ZNF814_ChIP2


title: ChIP-seq analysis of BAZ2B genomic target locations in HEK293, THC0613TANN_BAZ2B_ChIP1


title: ChIP-seq analysis of ZNF780B genomic target locations in HEK293, THC0598TANN_ZNF780B_ChIP2


title: ChIP-seq analysis of ZNF773 genomic target locations in HEK293, THC0597TANN_ZNF773_ChIP2


title: ChIP-seq analysis of ZNF732 genomic target locations in HEK293, THC0595TANN_ZNF732_ChIP1


title: ChIP-seq analysis of ZNF763 genomic target locations in HEK293, THC0596TANN_ZNF763_ChIP1


title: ChIP-seq analysis of ZNF709 genomic target locations in HEK293, THC0592TANN_ZNF709_ChIP1


title: ChIP-seq analysis of ZNF721 genomic target locations in HEK293, THC0593TANN_ZNF721_ChIP4


title: ChIP-seq analysis of ZNF687 genomic target locations in HEK293, THC0588TANN_ZNF687_ChIP1


title: ChIP-seq analysis of ZNF703 genomic target locations in HEK293, THC0591TANN_ZNF703_ChIP1


title: ChIP-seq analysis of ZNF689 genomic target locations in HEK293, THC0589TANN_ZNF689_ChIP2


title: ChIP-seq analysis of ZNF672 genomic target locations in HEK293, THC0586TANN_ZNF672_ChIP1


title: ChIP-seq analysis of ZNF665 genomic target locations in HEK293, THC0585TANN_ZNF665_ChIP1


title: ChIP-seq analysis of ZNF630 genomic target locations in HEK293, THC0582TANN_ZNF630_ChIP1


title: ChIP-seq analysis of ZNF618 genomic target locations in HEK293, THC0581TANN_ZNF618_ChIP1


title: ChIP-seq analysis of ZNF654 genomic target locations in HEK293, THC0584TANN_ZNF654_ChIP1


title: ChIP-seq analysis of ZNF678 genomic target locations in HEK293, THC0587TANN_ZNF678_ChIP1


title: ChIP-seq analysis of ZNF587B genomic target locations in HEK293, THC0579TANN_ZNF587B_ChIP2


title: ChIP-seq analysis of ZNF646 genomic target locations in HEK293, THC0600TANN_ZNF646_ChIP2


title: ChIP-seq analysis of ZNF644 genomic target locations in HEK293, THC0583TANN_ZNF644_ChIP2


title: ChIP-seq analysis of ZNF598 genomic target locations in HEK293, THC0580TANN_ZNF598_ChIP1


title: ChIP-seq analysis of ZNF57 genomic target locations in HEK293, THC0577TANN_ZNF57_ChIP2


title: ChIP-seq analysis of ZNF43 genomic target locations in HEK293, THC0573TANN_ZNF43_ChIP1


title: ChIP-seq analysis of ZNF131 genomic target locations in HEK293, THC0571TANN_ZNF131_ChIP1


title: ChIP-seq analysis of ZNF568 genomic target locations in HEK293, THC0576TANN_ZNF568_ChIP1


title: ChIP-seq analysis of ZNF335 genomic target locations in HEK293, THC0572TANN_ZNF335_ChIP1


title: ChIP-seq analysis of ZNF526 genomic target locations in HEK293, THC0574TANN_ZNF526_ChIP1


title: ChIP-seq analysis of ZNF726 genomic target locations in HEK293, THC0594TANN_ZNF726_ChIP1


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0575TANN_CTCF_ChIP2

value: CTCF


title: ChIP-seq analysis of ZNF700 genomic target locations in HEK293, THC0599TANN_ZNF700_ChIP2


title: ChIP-seq analysis of ZNF699 genomic target locations in HEK293, THC0590TANN_ZNF699_ChIP1


title: ChIP-seq analysis of ZFP91 genomic target locations in HEK293, THC0570TANN_ZFP91_ChIP1


title: ChIP-seq analysis of L3MBTL4 genomic target locations in HEK293, THC0568TANN_L3MBTL4_ChIP2


title: ChIP-seq analysis of PRDM2 genomic target locations in HEK293, THC0569TANN_PRDM2_ChIP1


title: ChIP-seq analysis of FAM170A genomic target locations in HEK293, THC0566TANN_FAM170A_ChIP2


title: ChIP-seq analysis of SKI genomic target locations in HEK293, THC0552TANN_SKI_ChIP2

value: SKI


title: ChIP-seq analysis of PRR12 genomic target locations in HEK293, THC0563TANN_PRR12_ChIP1


title: ChIP-seq analysis of NCOA3 genomic target locations in HEK293, THC0564TANN_NCOA3_ChIP1


title: ChIP-seq analysis of CHCHD3 genomic target locations in HEK293, THC0562TANN_CHCHD3_ChIP1


title: ChIP-seq analysis of PA2G4 genomic target locations in HEK293, THC0546TANN_PA2G4_ChIP1


title: ChIP-seq analysis of JAZF1 genomic target locations in HEK293, THC0567TANN_JAZF1_ChIP2


title: ChIP-seq analysis of PLSCR1 genomic target locations in HEK293, THC0548TANN_PLSCR1_ChIP1


title: ChIP-seq analysis of PURB genomic target locations in HEK293, THC0549TANN_PURB_ChIP2

value: PURB


title: ChIP-seq analysis of KCNIP3 genomic target locations in HEK293, THC0545TANN_KCNIP3_ChIP1


title: ChIP-seq analysis of PCGF6 genomic target locations in HEK293, THC0547TANN_PCGF6_ChIP1


title: ChIP-seq analysis of CREB3L3 genomic target locations in HEK293, THC0565TANN_CREB3L3_ChIP1


title: ChIP-seq analysis of DACH2 genomic target locations in HEK293, THC0542TANN_DACH2_ChIP1


title: ChIP-seq analysis of CSRNP3 genomic target locations in HEK293, THC0541TANN_CSRNP3_ChIP1


title: ChIP-seq analysis of CSRNP1 genomic target locations in HEK293, THC0540TANN_CSRNP1_ChIP1


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0544TANN_YY1_ChIP2


title: ChIP-seq analysis of CENPX genomic target locations in HEK293, THC0539TANN_CENPX_ChIP1

value: CENPX


title: ChIP-seq analysis of SKIL genomic target locations in HEK293, THC0551TANN_SKIL_ChIP2

value: SKIL


title: ChIP-seq analysis of CENPS genomic target locations in HEK293, THC0538TANN_CENPS_ChIP1

value: CENPS


title: ChIP-seq analysis of RBCK1 genomic target locations in HEK293, THC0550TANN_RBCK1_ChIP1


title: ChIP-seq analysis of CC2D1A genomic target locations in HEK293, THC0537TANN_CC2D1A_ChIP2


title: ChIP-seq analysis of THAP7 genomic target locations in HEK293, THC0534TANN_THAP7_ChIP1


title: ChIP-seq analysis of THAP10 genomic target locations in HEK293, THC0532TANN_THAP10_ChIP1


title: ChIP-seq analysis of THAP9 genomic target locations in HEK293, THC0535TANN_THAP9_ChIP1


title: ChIP-seq analysis of THAP5 genomic target locations in HEK293, THC0533TANN_THAP5_ChIP1


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0531TANN_YY1_ChIP1

value: Approved


title: ChIP-seq analysis of POU5F1 genomic target locations in HEK293, THC0530TANN_POU5F1_ChIP1


title: ChIP-seq analysis of NFKB1 genomic target locations in HEK293, THC0528TANN_NFKB1_ChIP1


title: ChIP-seq analysis of SRY genomic target locations in HEK293, THC0529TANN_SRY_ChIP1


title: ChIP-seq analysis of DRAP1 genomic target locations in HEK293, THC0543TANN_DRAP1_ChIP1


title: ChIP-seq analysis of GCM1 genomic target locations in HEK293, THC0525TANN_GCM1_ChIP1


title: ChIP-seq analysis of RXRA genomic target locations in HEK293, THC0526TANN_RXRA_ChIP1


title: ChIP-seq analysis of LHX6 genomic target locations in HEK293, THC0524TANN_LHX6_ChIP1


title: ChIP-seq analysis of FOSL2 genomic target locations in HEK293, THC0523TANN_FOSL2_ChIP1


title: ChIP-seq analysis of NR1H4 genomic target locations in HEK293, THC0527TANN_NR1H4_ChIP1


title: ChIP-seq analysis of NFX1 genomic target locations in HEK293, THC0521TANN_NFX1_ChIP1


title: ChIP-seq analysis of TTF1 genomic target locations in HEK293, THC0520TANN_TTF1_ChIP1


title: ChIP-seq analysis of SOX15 genomic target locations in HEK293, THC0522TANN_SOX15_ChIP1


title: ChIP-seq analysis of MYSM1 genomic target locations in HEK293, THC0519TANN_MYSM1_ChIP1


title: ChIP-seq analysis of AEBP1 genomic target locations in HEK293, THC0536TANN_AEBP1_ChIP2


title: ChIP-seq analysis of MSANTD4 genomic target locations in HEK293, THC0518TANN_MSANTD4_ChIP2


title: ChIP-seq analysis of HSFX1 genomic target locations in HEK293, THC0513TANN_HSFX1_ChIP1


title: ChIP-seq analysis of MSANTD1 genomic target locations in HEK293, THC0514TANN_MSANTD1_ChIP2


title: ChIP-seq analysis of GATAD2A genomic target locations in HEK293, THC0512TANN_GATAD2A_ChIP2


title: ChIP-seq analysis of PIN1 genomic target locations in HEK293, THC0516TANN_PIN1_ChIP1


title: ChIP-seq analysis of ZNF845 genomic target locations in HEK293, THC0509TANN_ZNF845_ChIP1


title: ChIP-seq analysis of ZNF865 genomic target locations in HEK293, THC0510TANN_ZNF865_ChIP1


title: ChIP-seq analysis of MBD4 genomic target locations in HEK293, THC0515TANN_MBD4_ChIP2


title: ChIP-seq analysis of ZNF841 genomic target locations in HEK293, THC0508TANN_ZNF841_ChIP1


title: ChIP-seq analysis of ZNF800 genomic target locations in HEK293, THC0505TANN_ZNF800_ChIP1


title: ChIP-seq analysis of ZNF700 genomic target locations in HEK293, THC0503TANN_ZNF700_ChIP1


title: ChIP-seq analysis of ZNF814 genomic target locations in HEK293, THC0506TANN_ZNF814_ChIP1


title: ChIP-seq analysis of ZNF646 genomic target locations in HEK293, THC0504TANN_ZNF646_ChIP1


title: ChIP-seq analysis of ZNF773 genomic target locations in HEK293, THC0501TANN_ZNF773_ChIP1


title: ChIP-seq analysis of ZNF763 genomic target locations in HEK293, THC0500TANN_ZNF763_ChIP2


title: ChIP-seq analysis of BAZ2B genomic target locations in HEK293, THC0517TANN_BAZ2B_ChIP2


title: ChIP-seq analysis of ZNF732 genomic target locations in HEK293, THC0499TANN_ZNF732_ChIP2


title: ChIP-seq analysis of ZNF726 genomic target locations in HEK293, THC0498TANN_ZNF726_ChIP2


title: ChIP-seq analysis of ZGPAT genomic target locations in HEK293, THC0511TANN_ZGPAT_ChIP2


title: ChIP-seq analysis of ZNF721 genomic target locations in HEK293, THC0497TANN_ZNF721_ChIP1


title: ChIP-seq analysis of ZNF703 genomic target locations in HEK293, THC0495TANN_ZNF703_ChIP2


title: ChIP-seq analysis of ZNF672 genomic target locations in HEK293, THC0490TANN_ZNF672_ChIP2


title: ChIP-seq analysis of ZNF689 genomic target locations in HEK293, THC0493TANN_ZNF689_ChIP1


title: ChIP-seq analysis of ZNF699 genomic target locations in HEK293, THC0494TANN_ZNF699_ChIP2


title: ChIP-seq analysis of ZNF678 genomic target locations in HEK293, THC0491TANN_ZNF678_ChIP2


title: ChIP-seq analysis of ZNF687 genomic target locations in HEK293, THC0492TANN_ZNF687_ChIP2


title: ChIP-seq analysis of ZNF665 genomic target locations in HEK293, THC0489TANN_ZNF665_ChIP2


title: ChIP-seq analysis of ZNF630 genomic target locations in HEK293, THC0486TANN_ZNF630_ChIP2


title: ChIP-seq analysis of ZNF831 genomic target locations in HEK293, THC0507TANN_ZNF831_ChIP1


title: ChIP-seq analysis of ZNF644 genomic target locations in HEK293, THC0487TANN_ZNF644_ChIP1


title: ChIP-seq analysis of ZNF780B genomic target locations in HEK293, THC0502TANN_ZNF780B_ChIP1


title: ChIP-seq analysis of ZNF618 genomic target locations in HEK293, THC0485TANN_ZNF618_ChIP2


title: ChIP-seq analysis of ZNF578 genomic target locations in HEK293, THC0482TANN_ZNF578_ChIP2


title: ChIP-seq analysis of ZNF568 genomic target locations in HEK293, THC0480TANN_ZNF568_ChIP2


title: ChIP-seq analysis of ZNF57 genomic target locations in HEK293, THC0481TANN_ZNF57_ChIP1


title: ChIP-seq analysis of ZNF587B genomic target locations in HEK293, THC0483TANN_ZNF587B_ChIP1


title: ChIP-seq analysis of ZNF598 genomic target locations in HEK293, THC0484TANN_ZNF598_ChIP2


title: ChIP-seq analysis of ZNF43 genomic target locations in HEK293, THC0477TANN_ZNF43_ChIP2


title: ChIP-seq analysis of ZNF335 genomic target locations in HEK293, THC0476TANN_ZNF335_ChIP2


title: ChIP-seq analysis of ZNF526 genomic target locations in HEK293, THC0478TANN_ZNF526_ChIP2


title: ChIP-seq analysis of PRDM2 genomic target locations in HEK293, THC0473TANN_PRDM2_ChIP2


title: ChIP-seq analysis of ZNF709 genomic target locations in HEK293, THC0496TANN_ZNF709_ChIP2


title: ChIP-seq analysis of ZNF131 genomic target locations in HEK293, THC0475TANN_ZNF131_ChIP2


title: ChIP-seq analysis of L3MBTL4 genomic target locations in HEK293, THC0472TANN_L3MBTL4_ChIP1


title: ChIP-seq analysis of ZFP91 genomic target locations in HEK293, THC0474TANN_ZFP91_ChIP2


title: ChIP-seq analysis of JAZF1 genomic target locations in HEK293, THC0471TANN_JAZF1_ChIP1


title: ChIP-seq analysis of CREB3L3 genomic target locations in HEK293, THC0469TANN_CREB3L3_ChIP2


title: ChIP-seq analysis of ZNF654 genomic target locations in HEK293, THC0488TANN_ZNF654_ChIP2


title: ChIP-seq analysis of FAM170A genomic target locations in HEK293, THC0470TANN_FAM170A_ChIP1


title: ChIP-seq analysis of NCOA3 genomic target locations in HEK293, THC0468TANN_NCOA3_ChIP2


title: ChIP-seq analysis of MKX genomic target locations in HEK293, THC0462TANM_MKX_ChIP1

value: MKX


title: Pre-IP control THC0465TAND_THAP11_INPUT1

value: Input


title: ChIP-seq analysis of MKX genomic target locations in HEK293, THC0462TAND_MKX_ChIP1

value: ChIP


title: ChIP-seq analysis of KDM2A genomic target locations in HEK293, THC0461TANM_KDM2A_ChIP1


title: ChIP-seq analysis of ZNF474 genomic target locations in HEK293, THC0460TAND_ZNF474_ChIP1


title: ChIP-seq analysis of KDM2A genomic target locations in HEK293, THC0461TAND_KDM2A_ChIP1


title: ChIP-seq analysis of ZNF474 genomic target locations in HEK293, THC0460TANM_ZNF474_ChIP1


title: Pre-IP control THC0465TANM_THAP11_INPUT1


title: ChIP-seq analysis of ZNF280B genomic target locations in HEK293, THC0459TAND_ZNF280B_ChIP1

value: Not approved


title: ChIP-seq analysis of POGK genomic target locations in HEK293, THC0458TANM_POGK_ChIP1

value: POGK


title: ChIP-seq analysis of ZNF280B genomic target locations in HEK293, THC0459TANM_ZNF280B_ChIP1


title: ChIP-seq analysis of LEUTX genomic target locations in HEK293, THC0455TAND_LEUTX_ChIP1

value: LEUTX


title: ChIP-seq analysis of LEUTX genomic target locations in HEK293, THC0455TANM_LEUTX_ChIP1


title: ChIP-seq analysis of POGK genomic target locations in HEK293, THC0458TAND_POGK_ChIP1


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0456TANM_CTCF_ChIP1


title: ChIP-seq analysis of ZNF275 genomic target locations in HEK293, THC0452TAND_ZNF275_ChIP1


title: ChIP-seq analysis of ZNF275 genomic target locations in HEK293, THC0452TANM_ZNF275_ChIP1


title: ChIP-seq analysis of ZNF827 genomic target locations in HEK293, THC0451TANM_ZNF827_ChIP1


title: ChIP-seq analysis of ZNF471 genomic target locations in HEK293, THC0453TANM_ZNF471_ChIP1


title: ChIP-seq analysis of ZNF827 genomic target locations in HEK293, THC0451TAND_ZNF827_ChIP1


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0449TANM_YY1_ChIP1


title: ChIP-seq analysis of CHCHD3 genomic target locations in HEK293, THC0466TANN_CHCHD3_ChIP2


title: ChIP-seq analysis of MBNL2 genomic target locations in HEK293, THC0454TANM_MBNL2_ChIP1

value: No expert curation due to insufficient peak numbers


title: ChIP-seq analysis of MBNL2 genomic target locations in HEK293, THC0454TAND_MBNL2_ChIP1


title: ChIP-seq analysis of ZNF471 genomic target locations in HEK293, THC0453TAND_ZNF471_ChIP1


title: ChIP-seq analysis of PRR12 genomic target locations in HEK293, THC0467TANN_PRR12_ChIP2


title: ChIP-seq analysis of YY1 genomic target locations in HEK293, THC0449TAND_YY1_ChIP1


title: ChIP-seq analysis of ZXDC genomic target locations in HEK293, THC0447TANM_ZXDC_ChIP1

value: ZXDC


title: ChIP-seq analysis of ADNP genomic target locations in HEK293, THC0448TANM_ADNP_ChIP1

value: ADNP


title: ChIP-seq analysis of ZNF470 genomic target locations in HEK293, THC0446TANM_ZNF470_ChIP1


title: ChIP-seq analysis of CTCF genomic target locations in HEK293, THC0456TAND_CTCF_ChIP1


title: ChIP-seq analysis of TSC22D1 genomic target locations in HEK293, THC0442TAND_TSC22D1_ChIP1


title: ChIP-seq analysis of ZNF251 genomic target locations in HEK293, THC0445TANM_ZNF251_ChIP1


title: ChIP-seq analysis of CAMTA2 genomic target locations in HEK293, THC0444TANM_CAMTA2_ChIP1


title: ChIP-seq analysis of ZNF251 genomic target locations in HEK293, THC0445TAND_ZNF251_ChIP1


title: ChIP-seq analysis of HMGN3 genomic target locations in HEK293, THC0441TANM_HMGN3_ChIP1


title: ChIP-seq analysis of HMGN3 genomic target locations in HEK293, THC0441TAND_HMGN3_ChIP1


title: ChIP-seq analysis of ZNF470 genomic target locations in HEK293, THC0446TAND_ZNF470_ChIP1


title: ChIP-seq analysis of ZXDA genomic target locations in HEK293, THC0440TANM_ZXDA_ChIP1

value: ZXDA


title: ChIP-seq analysis of ZXDA genomic target locations in HEK293, THC0440TAND_ZXDA_ChIP1


title: ChIP-seq analysis of ZNF395 genomic target locations in HEK293, THC0439TAND_ZNF395_ChIP1


title: ChIP-seq analysis of ZNF234 genomic target locations in HEK293, THC0438TANM_ZNF234_ChIP1


title: ChIP-seq analysis of ZNF234 genomic target locations in HEK293, THC0438TAND_ZNF234_ChIP1


title: ChIP-seq analysis of ZNF395 genomic target locations in HEK293, THC0439TANM_ZNF395_ChIP1


title: ChIP-seq analysis of ADNP genomic target locations in HEK293, THC0448TAND_ADNP_ChIP1


title: ChIP-seq analysis of TMF1 genomic target locations in HEK293, THC0435TANM_TMF1_ChIP1


title: ChIP-seq analysis of TMF1 genomic target locations in HEK293, THC0435TAND_TMF1_ChIP1


title: ChIP-seq analysis of JRK genomic target locations in HEK293, THC0437TAND_JRK_ChIP1

value: JRK


title: ChIP-seq analysis of HMG20A genomic target locations in HEK293, THC0434TANM_HMG20A_ChIP1


title: ChIP-seq analysis of HMG20A genomic target locations in HEK293, THC0434TAND_HMG20A_ChIP1


title: ChIP-seq analysis of JRK genomic target locations in HEK293, THC0437TANM_JRK_ChIP1


title: ChIP-seq analysis of ZUP1 genomic target locations in HEK293, THC0433TANM_ZUP1_ChIP1


title: ChIP-seq analysis of ZUP1 genomic target locations in HEK293, THC0433TAND_ZUP1_ChIP1


title: ChIP-seq analysis of ZXDC genomic target locations in HEK293, THC0447TAND_ZXDC_ChIP1


title: ChIP-seq analysis of ZNF385C genomic target locations in HEK293, THC0432TANM_ZNF385C_ChIP1


title: ChIP-seq analysis of CAMTA2 genomic target locations in HEK293, THC0444TAND_CAMTA2_ChIP1


title: ChIP-seq analysis of TSC22D1 genomic target locations in HEK293, THC0442TANM_TSC22D1_ChIP1


title: ChIP-seq analysis of ZNF385C genomic target locations in HEK293, THC0432TAND_ZNF385C_ChIP1


title: ChIP-seq analysis of ZNF233 genomic target locations in HEK293, THC0431TAND_ZNF233_ChIP1


title: ChIP-seq analysis of ZNF233 genomic target locations in HEK293, THC0431TANM_ZNF233_ChIP1


title: ChIP-seq analysis of AKNA genomic target locations in HEK293, THC0430TAND_AKNA_ChIP1

value: AKNA


title: ChIP-seq analysis of AKNA genomic target locations in HEK293, THC0430TANM_AKNA_ChIP1


title: ChIP-seq analysis of TET2 genomic target locations in HEK293, THC0428TANM_TET2_ChIP1


title: ChIP-seq analysis of ZNF230 genomic target locations in HEK293, THC0424TAND_ZNF230_ChIP1


title: ChIP-seq analysis of ZNF609 genomic target locations in HEK293, THC0426TAND_ZNF609_ChIP1


title: ChIP-seq analysis of TET2 genomic target locations in HEK293, THC0428TAND_TET2_ChIP1


title: ChIP-seq analysis of ZNF385B genomic target locations in HEK293, THC0425TAND_ZNF385B_ChIP1


title: ChIP-seq analysis of ZNF609 genomic target locations in HEK293, THC0426TANM_ZNF609_ChIP1


title: ChIP-seq analysis of GTF2IRD2B genomic target locations in HEK293, THC0427TAND_GTF2IRD2B_ChIP1


title: ChIP-seq analysis of ZNF516 genomic target locations in HEK293, THC0419TANM_ZNF516_ChIP1


title: ChIP-seq analysis of ZNF516 genomic target locations in HEK293, THC0419TAND_ZNF516_ChIP1


title: ChIP-seq analysis of GTF2IRD2 genomic target locations in HEK293, THC0420TAND_GTF2IRD2_ChIP1


title: ChIP-seq analysis of ZNF229 genomic target locations in HEK293, THC0417TANM_ZNF229_ChIP1


title: ChIP-seq analysis of ZNF385A genomic target locations in HEK293, THC0418TAND_ZNF385A_ChIP1


title: ChIP-seq analysis of ZNF229 genomic target locations in HEK293, THC0417TAND_ZNF229_ChIP1


title: ChIP-seq analysis of TCF20 genomic target locations in HEK293, THC0421TANM_TCF20_ChIP1


title: ChIP-seq analysis of ZNF230 genomic target locations in HEK293, THC0424TANM_ZNF230_ChIP1


title: ChIP-seq analysis of TCF20 genomic target locations in HEK293, THC0421TAND_TCF20_ChIP1


title: ChIP-seq analysis of GTF2IRD2 genomic target locations in HEK293, THC0420TANM_GTF2IRD2_ChIP1


title: ChIP-seq analysis of ZNF385A genomic target locations in HEK293, THC0418TANM_ZNF385A_ChIP1


title: ChIP-seq analysis of ZNF750 genomic target locations in HEK293, THC0416TANM_ZNF750_ChIP1


title: ChIP-seq analysis of GTF2IRD2B genomic target locations in HEK293, THC0427TANM_GTF2IRD2B_ChIP1


title: ChIP-seq analysis of SON genomic target locations in HEK293, THC0414TANM_SON_ChIP1

value: SON


title: ChIP-seq analysis of ZNF385B genomic target locations in HEK293, THC0425TANM_ZNF385B_ChIP1


title: ChIP-seq analysis of GRHL3 genomic target locations in HEK293, THC0413TANM_GRHL3_ChIP1


title: ChIP-seq analysis of ZNF609 genomic target locations in HEK293, THC0423TAND_ZNF609_ChIP1


title: ChIP-seq analysis of SON genomic target locations in HEK293, THC0414TAND_SON_ChIP1


title: ChIP-seq analysis of ZNF750 genomic target locations in HEK293, THC0416TAND_ZNF750_ChIP1


title: ChIP-seq analysis of ZNF609 genomic target locations in HEK293, THC0423TANM_ZNF609_ChIP1


title: ChIP-seq analysis of GRHL3 genomic target locations in HEK293, THC0413TAND_GRHL3_ChIP1


title: ChIP-seq analysis of ZNF510 genomic target locations in HEK293, THC0412TANM_ZNF510_ChIP1


title: ChIP-seq analysis of ZNF510 genomic target locations in HEK293, THC0412TAND_ZNF510_ChIP1


title: ChIP-seq analysis of ZNF362 genomic target locations in HEK293, THC0411TANM_ZNF362_ChIP1


title: ChIP-seq analysis of ZNF362 genomic target locations in HEK293, THC0411TAND_ZNF362_ChIP1


title: ChIP-seq analysis of ZNF226 genomic target locations in HEK293, THC0410TAND_ZNF226_ChIP1


title: ChIP-seq analysis of ZNF226 genomic target locations in HEK293, THC0410TANM_ZNF226_ChIP1


title: ChIP-seq analysis of ZHX3 genomic target locations in HEK293, THC0407TAND_ZHX3_ChIP1


title: ChIP-seq analysis of ZGLP1 genomic target locations in HEK293, THC0406TANM_ZGLP1_ChIP1


title: ChIP-seq analysis of ZHX3 genomic target locations in HEK293, THC0407TANM_ZHX3_ChIP1


title: ChIP-seq analysis of ZNF358 genomic target locations in HEK293, THC0404TAND_ZNF358_ChIP1


title: ChIP-seq analysis of ZGLP1 genomic target locations in HEK293, THC0406TAND_ZGLP1_ChIP1


title: ChIP-seq analysis of ARID2 genomic target locations in HEK293, THC0409TAND_ARID2_ChIP2


title: ChIP-seq analysis of KDM5B genomic target locations in HEK293, THC0403TANM_KDM5B_ChIP1


title: ChIP-seq analysis of ZNF507 genomic target locations in HEK293, THC0405TAND_ZNF507_ChIP1


title: ChIP-seq analysis of ZNF507 genomic target locations in HEK293, THC0405TANM_ZNF507_ChIP1


title: ChIP-seq analysis of ARID2 genomic target locations in HEK293, THC0409TANM_ARID2_ChIP2


title: ChIP-seq analysis of KDM5B genomic target locations in HEK293, THC0403TAND_KDM5B_ChIP1