title: SL470900

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli


title: AdultSample63_PBMC

status: Public on Feb 07 2025

type: genomic

city: University Park

first: Idan

last: Shalev

state: PA

address: 219 Biobehavioral Health Building

country: USA

institute: The Pennsylvania State University

description: Processed data file column header: 631

hyb_protocol: Bisulfite converted DNA was amplified, fragmented and hybridized to the human Infinium MethylationEPICv2 BeadChip (Illumina) using standard Illumina protocols.

scan_protocol: Arrays were imaged using BeadArray Reader (HiScan) and standard Illumina scanner settings.

data_processing:
IDAT files were read into R statistical software using the read.metharray.exp function in the minfi package. Samples with probe detection p-values greater than 0.05 for more than 5% of probes or with bisulfite conversion rates of less than 80% were excluded from the current data (no IDAT files or processed data are included for these samples). CpG probes with a bead count of less than 3 in 5% or more samples or with an average detection p-value of > 0.05 across all samples were excluded. All samples were normalized using the beta-mixture quantile normalization (BMIQ) method. In order to remove duplicate probes in the EPIC v2 chip, we used the R package ENmix (using v1.36.08 or newer). This package has a function called rm.cgsuffix. This function both removes the suffix on EPIC v2 probe names (i.e., removes “_BC11” from “cg25324105_BC11”) and collapses duplicate probes by taking their averages.
Processed data files includes: Average Beta

label: Cy3 and Cy5

molecule: genomic DNA

organism: Homo sapiens

source_name: Cell-free DNA from PBMC tissue

label_protocol: Standard Illumina protocol.

extract_protocol: To minimize the impact of DNA extraction procedures, DNA was extracted from all tissue samples using the Gentra Puregene DNA Extraction Kit according to factory guidelines (Qiagen). Extracted DNA was stored at -80°C in Qiagen DNA Hydration Solution.

tag: tissue

value: PBMC

tag: Sex

value: Male

tag: age


title: SL470901

type: SRA

city: Ann Arbor

first: Elaine

last: Hebda-Bauer

state: Michigan

address: 205 Zina Pitcher Place

department: Michigan Neuroscience Institute

institute: University of Michigan

library_source: transcriptomic

data_processing:
Alignment: STAR: 2.7.3a
Quantification of gene-level counts: Subread version 2.0.0
Quality control and filtering: Rstudio (v.1.4.1717, R v. 4.1.1)
Differential expression analysis: limma v.3.48.3
Assembly: Rnor6, annotation: Ensembl v.103
Supplementary files format and content: Filtered log(2) cpm per Ensembl-annotated gene for each F2 hippocampal sample

molecule: polyA RNA

organism: Rattus norvegicus

source_name: hippocampus

growth_protocol: Selectively breeding rats for a high or low propensity to explore a novel environment produced the bHR and bLR lines, respectively, at the University of Michigan (Stead et al., 2006). After 37 generations, an initial set (“F0”) of bHRs and bLRs were chosen from 24 distinct families (12 bHR, 12 bLR) to cross-breed for creating 12 intercross families. Their “F1” offspring were screened for novelty-induced locomotion, and individuals with similarly high or low LocoScores were bred with each other to produce a re-emergence of diverse behavioral phenotypes in the “F2” generation. These 48 F2 litters generated 540 rats, 323 of which were phenotyped as young adults (2-4 months old). Our current study used a subset of these animals (F0: n=24, n=6/phenotype per sex; F2: n=250, n=125/sex) that overlapped with those in previous genetic studies (Chitre et al., 2022; Z. Zhou et al., 2019a) but was distinct from those included in our previous male-only RNA-Seq meta-analysis (Birt et al., 2021).  All procedures were conducted in accordance with the National Institutes of Health Guide for the Care and Use of Animals and approved by the Institutional Animal Care and Use Committee at the University of Michigan.

extract_protocol:
Adults (postnatal days 113-132) were decapitated without anesthesia and brains extracted within two minutes. For the F0s, whole HPC was immediately dissected and flash frozen. For the F2s, whole brains were flash frozen, and then later hole punches from the dorsal and ventral HPC were pooled from four hemisected coronal slabs (-2.12 to -6.04 mm Bregma; (Paxinos & Watson, 2013)) for each animal. RNA was extracted using the Qiagen RNeasy Plus Mini Kit.
A Ribogreen Assay was performed using 2 ml of a 7X dilution to measure RNA concentration and total RNA amount. To measure RNA quality, 2 ml of various dilutions were loaded onto a HS RNA Fragment Analyzer chip. The samples were then normalized to 500ng input into 50ml volume for use in Poly A RNA-seq library reactions that were completed through Second Strand Synthesis and Purification. Diluted samples were used for a PicoGreen assay and loaded onto a HS Caliper chip for quality analysis of the cDNA libraries. Following Kapa qPCR, samples were sequenced on a NovaSeq S4 101PE flowcell targeting an average of 25 million reads.

treatment_protocol: Behavioral data analysis: All F0 and F2 rats were tested for locomotor activity in a novel environment (“LocoScore,” protocol: (Stead et al., 2006)). Exploratory and anxiety-related behaviors were measured on an Elevated Plus Maze (protocol: (Chitre et al., 2022)), including distance traveled (cm), time immobile (sec), and percent time in the open arms. A subset of F2s (n=209) was subsequently tested for Sign Tracking vs. Goal Tracking behavior during the last two days of a week-long Pavlovian Conditioned Approach task (protocol: (Meyer et al., 2012)) using a combined score (“PavCA Index”) summarizing behaviors indicating preference for the conditioned stimuli (lever) vs. unconditioned stimuli (food magazine).

value: hippocampus

tag: hippocampal siide used

value: right

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: ribosomeperc

tag: mrnaperc

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample63_Saliva

description: Processed data file column header: 634

source_name: Cell-free DNA from Saliva tissue

tag: tissue

value: Saliva

tag: Sex

tag: age


title: AdultSample59_PBMC

description: Processed data file column header: 591


title: AdultSample59_Buccal

description: Processed data file column header: 593

source_name: Cell-free DNA from Buccal tissue

value: Buccal


title: AdultSample59_Saliva

description: Processed data file column header: 594


title: HepG2_iMDK_5µM_3

city: Münster

first: Kornelius

last: Kerl

address: Albert-Schweitzer-Campus 1

department: Department of Pediatric Hematology and Oncology

country: Germany

institute: University Children's Hospital Münster

data_processing:
Alignment of raw FASTQ files to the human reference genome GRCh38 was performed using STAR v2.7.3a followed by generation of BAM files, sorting, and indexing using SAMtools v1.16.1 (mapping quality for uniquely mapping reads set to 255) and extracting read counts for all genes using featureCounts() from Rsubread v2.14.2. Raw counts were RLE (relative log expression) normalized and counts per million wer calculated as implemented in edgeR v3.36. Genes with zero counts in all samples were filtered out.
Assembly: GRCh38
Supplementary files format and content: tab-delimited text file includes raw counts for each sample
Supplementary files format and content: tab-delimited text file includes RLE normalized counts of filtered genes for each sample

molecule: total RNA

growth_protocol: HepG2 and Huh6 cell lines were cultured in RPMI-1640 cell culture medium with 10% fetal bovine serum and 1% penicillin/streptomycin. Cells were subcultured roughly once per week using 0.25% Trypsin/EDTA for detachment.

extract_protocol:
RNA isolation was performed using the RNeasy Mini Kit (Qiagen, # 74104) including DNase treatment following the corresponding instructions.
Libraries were prepared using NEBNext Poly(A) enrichment and Ultra II Directional RNA (New England Biolabs) using 1 µg total RNA. Library quality was controlled using D1000 ScreenTape assays (Agilent Technologies, Inc.).

treatment_protocol: HepG2 and Huh6 cells were seeded into 6-well plates at roughly 5.5 x 10^5 and 2.5 x 10^5 cells per well, respectively. After letting the cells attach and grow for 48 hours, cell culture medium was exchanged for inhibitor- or vehicle-containing medium. Cells were kept in culture for another 48 hours followed by RNA isolation.

tag: cell line

tag: treatment

value: iMDK, 5 uM


title: SL470898

tag: hippocampal siide used

value: Female

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile


title: AdultSample38_Saliva

description: Processed data file column header: 384

tag: tissue

tag: Sex

tag: age


title: HepG2_iMDK_5µM_2

tag: cell line

tag: treatment


title: AdultSample63_Buccal

description: Processed data file column header: 633


title: AdultSample38_Buccal

description: Processed data file column header: 383


title: SL470897

tag: hippocampal siide used

value: left

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: HepG2_iMDK_10µM_1

tag: cell line

tag: treatment

value: iMDK, 10 uM


title: AdultSample13_PBMC

description: Processed data file column header: 131

tag: tissue

tag: Sex

tag: age


title: AdultSample13_Buccal

description: Processed data file column header: 133


title: AdultSample2_PBMC

description: Processed data file column header: 21


title: SL470899

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile

tag: failed qc

value: low RIN


title: AdultSample38_PBMC

description: Processed data file column header: 381

tag: tissue

tag: Sex

tag: age


title: HepG2_PKF_0.3µM_1

tag: cell line

tag: treatment


title: SL470896

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: One

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample41_Saliva

description: Processed data file column header: 414

tag: tissue

tag: Sex

tag: age


title: SL470895

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: HepG2_iMDK_5µM_1

tag: cell line

tag: treatment


title: AdultSample2_Buccal

description: Processed data file column header: 23

tag: tissue

tag: Sex

tag: age


title: SL470894

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent intronic

tag: percent intergenic

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample1_DBS

description: Processed data file column header: 12

source_name: Cell-free DNA from DBS tissue

tag: tissue

value: DBS

tag: Sex

tag: age


title: HepG2_PKF_0.2µM_3

tag: cell line

tag: treatment


title: AdultSample41_PBMC

description: Processed data file column header: 411

value: PBMC


title: SL470892

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: HepG2_PKF_0.2µM_2

tag: cell line

tag: treatment


title: HepG2_ctrl_3

value: empty vehicle


title: SL470891

tag: tissue

value: hippocampus

tag: hippocampal siide used

tag: Sex

value: Male

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: SL470893

tag: tissue

tag: hippocampal siide used

value: right

tag: Sex

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample1_PBMC

description: Processed data file column header: 11

tag: tissue

tag: Sex

tag: age


title: AdultSample41_Buccal

description: Processed data file column header: 413


title: HepG2_ctrl_2

tag: cell line

tag: treatment


title: AdultSample1_Saliva

description: Processed data file column header: 14


title: AdultSample72_Saliva

description: Processed data file column header: 724


title: SL470890

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample72_DBS

description: Processed data file column header: 722

tag: tissue

tag: Sex

tag: age


title: AdultSample5_PBMC

description: Processed data file column header: 51


title: AdultSample65_Buccal

description: Processed data file column header: 653


title: Huh6_iMDK_10µM_3

tag: cell line

tag: treatment


title: SL470888

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: SL470887

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: HepG2_PKF_0.2µM_1

tag: cell line

tag: treatment


title: AdultSample5_Buccal

description: Processed data file column header: 53

tag: tissue

value: Buccal

tag: Sex

tag: age


title: Huh6_iMDK_10µM_1


title: AdultSample72_Buccal

description: Processed data file column header: 723


title: AdultSample43_DBS

description: Processed data file column header: 432


title: AdultSample72_PBMC

description: Processed data file column header: 721


title: HepG2_ctrl_1


title: SL470889

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample65_PBMC

description: Processed data file column header: 651

tag: tissue

tag: Sex

tag: age


title: Huh6_iMDK_10µM_2

tag: cell line

tag: treatment


title: SL470884

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: Huh6_iMDK_5µM_1

tag: cell line

tag: treatment

value: iMDK, 5 uM


title: AdultSample34_DBS

description: Processed data file column header: 342

tag: tissue

tag: Sex

tag: age


title: AdultSample43_Buccal

description: Processed data file column header: 433

value: Female


title: Huh6_iMDK_5µM_3


title: AdultSample43_PBMC

description: Processed data file column header: 431


title: SL470886

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: Huh6_PKF_0.4µM_3

tag: cell line

tag: treatment


title: SL470882

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: SL470885

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: SL470881

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample43_Saliva

description: Processed data file column header: 434

tag: tissue

value: Saliva

tag: Sex

tag: age


title: AdultSample12_Buccal

description: Processed data file column header: 123


title: Huh6_PKF_0.4µM_1

tag: cell line

tag: treatment


title: SL470880

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample34_Saliva

description: Processed data file column header: 344

tag: tissue

tag: Sex

tag: age


title: AdultSample34_PBMC

description: Processed data file column header: 341


title: AdultSample34_Buccal

description: Processed data file column header: 343


title: SL470883

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample65_DBS

description: Processed data file column header: 652

tag: tissue

tag: Sex

tag: age


title: Huh6_PKF_0.3µM_3

tag: cell line

tag: treatment


title: AdultSample22_Saliva

description: Processed data file column header: 224


title: SL470879

tag: hippocampal siide used

value: left

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample22_Buccal

description: Processed data file column header: 223

tag: tissue

tag: Sex

tag: age


title: AdultSample11_Saliva

description: Processed data file column header: 114


title: AdultSample22_PBMC

description: Processed data file column header: 221


title: Huh6_PKF_0.4µM_2

tag: cell line

tag: treatment


title: Huh6_PKF_0.3µM_1


title: SL470877

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample22_DBS

description: Processed data file column header: 222

tag: tissue

tag: Sex

tag: age


title: Huh6_PKF_0.2µM_3

tag: cell line

tag: treatment


title: Huh6_iMDK_5µM_2


title: AdultSample12_PBMC

description: Processed data file column header: 121


title: AdultSample12_Saliva

description: Processed data file column header: 124


title: AdultSample12_DBS

description: Processed data file column header: 122


title: AdultSample3_Buccal

description: Processed data file column header: 33


title: AdultSample11_DBS

description: Processed data file column header: 112


title: AdultSample40_Saliva

description: Processed data file column header: 404


title: Huh6_PKF_0.3µM_2


title: AdultSample11_PBMC

description: Processed data file column header: 111


title: AdultSample11_Buccal

description: Processed data file column header: 113


title: SL470878

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample37_Buccal

description: Processed data file column header: 373

tag: tissue

tag: Sex

tag: age


title: SL470876

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: Huh6_ctrl_1

tag: cell line

tag: treatment


title: AdultSample3_DBS

description: Processed data file column header: 32

tag: tissue

tag: Sex

tag: age


title: AdultSample27_PBMC

description: Processed data file column header: 271


title: AdultSample3_PBMC

description: Processed data file column header: 31


title: Huh6_PKF_0.2µM_2


title: AdultSample27_Buccal

description: Processed data file column header: 273


title: SL470875

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: epm rawdatafile


title: AdultSample40_PBMC

description: Processed data file column header: 401

tag: tissue

tag: Sex

tag: age


title: Huh6_ctrl_3

tag: cell line

tag: treatment


title: Huh6_PKF_0.2µM_1


title: SL470874

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: learningclassification

value: GT

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: SL470873

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: epm rawdatafile


title: AdultSample37_PBMC

description: Processed data file column header: 371

tag: tissue

tag: Sex

tag: age


title: Huh6_ctrl_2

tag: cell line

tag: treatment


title: AdultSample20_Saliva

description: Processed data file column header: 204


title: m-GC, individual 4, replicate 3

city: Stanford

first: Jingxue

last: Xin

state: California

address: JAMES CLARK CENTER E100A

institute: Stanford University

data_processing:
The raw RNA sequencing reads for all samples were aligned to the human reference genome hg19 using the STAR program with standard input parameters. Gene expression levels were quantified by calculating FPKM values (fragments per kilobase of transcript per million fragments mapped) using RSEM software, and the gene annotation reference was GENCODE hg19.
The single-cell RNA-seq data for m-GCs was processed using 10x Genomics Cell Ranger 3.1.0 to handle the raw fastq files. For alignment and gene annotation, the human reference genome used was hg19, in conjunction with Ensembl 87
Assembly: hg19
Supplementary files format and content: Count and FPKM matrix text file, feature barcode matrix text file.

source_name: mature Guide Cells activated from dormant pre-GC

growth_protocol: Human unmobilized peripheral blood samples were collected from healthy donors. Immediately after collection, majority of the red blood cells were removed using lysis buffer and majority of lymphocytes were removed by high-speed centrifugation. The supernatant was removed and the cell pellet was gently rinsed with 1xPBS (pH 7.4) which contains pre-GC.

extract_protocol:
Total RNA were extracted using TRI Reagent protocol (Sigma-Aldrich). Residual DNA contamination was digested by using PerfeCTa DNase I (RNase-free, Quantabio).
RNA-seq libraries were constructed using the NEBNext Ultra II RNA Library Prep Kit for Illumina (New England Biolabs (NEB), E7770). Single cell RNA-seq library was constructed using Chromium Next GEM Single Cell 3’ Kit v3.1 (10X Genomics, PN-1000268).

treatment_protocol: The cell pellet was gently resuspended in 19 mL hepatic-conditioned medium to activate pre-GCs. The cell suspension was seeded in 100 mm diameter treated culture dishes (Corning, 430293) at 3,000,000 to 5,000,000 cells per dish, and incubated for 14-18 days in a CO2 (5%) incubator at 37oC. The hepatic-conditioned medium was changed every other day. Aggregation of granules near the center of the cells indicates maturation (m-GCs). Co-culture of m-GC and human umbilical cord-derived mesenchymal stromal cells (UC-MSC) at the ratio of 10:1 give rise to giaSC in the presence of hepatic-conditioned medium.

tag: cell type


title: shortHL_CRISPRcut_Day12_TR4_B4_R3

city: Seattle

first: Jay

last: Shendure

state: WA

address: 3720 15th Ave NE

department: Genome Sciences

institute: University of Washington

description:
Short half-life TF gRNA-barcode library
short_HL_TF_count_table.csv

library_source: genomic

data_processing:
ORF-barcode subassembly. In order to associate ORFs to DNA barcodes, sequencing libraries were prepared from barcoded COMET libraries (see Subassembly of ORF-barcode pairs). Reads from tagmented COMET libraries were aligned to ORF sequences using bowtie2 v2.2.5 to determine which ORF was tagged. A custom bowtie2 index of ORF sequences was generated and aligned against. A summary output format of the data was then generated that included the read name, the degenerate barcode sequence, the bowtie2-determined tagged ORF and the mapping quality of the read, which was then used as input for further QC to determine the list of BC-associated ORFs. The initial list of barcodes and ORFs were filtered to exclude reads with a mapping quality score less than 31, barcodes that include any ‘N’ bases, and barcodes associated with common sequencing error modes (e.g., GGGGGGGGGGGGGGGGGGGGGGGGG). We then eliminated barcodes with fewer than 10 reads of supporting evidence, which guards against seemingly unique barcodes that actually include rarely occurring sequencing errors. Ambiguous barcodes were eliminated which mapped to more than one ORF, however, these were included if there was one ORF with more than 90% of the read evidence supporting one barcode. The remaining barcode-ORF pairs were then used to identify the ORF on a plasmid relying on the sequencing of just the barcode (Table S1).
Processing barcode-gRNA sequencing data. Amplicon sequencing reads of gDNA extracted from cells sorted by GFP:mCherry ratio contain two important pieces of information: the sequenced gRNA along with a barcode that was previously associated with a specific ORF. As a first step we convert the raw read data into a summary output format that includes ORF (determined with the previously generated barcode-ORF lookup table), the target identity of the sequenced gRNA, along with the raw sequencing information of the barcode and guide. Summary output files from libraries generated from different conditions and sorted bins are then combined into one file that is then used for statistical analysis.
Supplementary files format and content: TableS1_BC_ORF_associations.csv contains associations between barcodes and ORFs. The file contains associations for both the pilot SCF and short half-life TF screens, and associations from either screen can be subset from the file using the 'experiment' column.
Supplementary files format and content: pilot_count_table.csv contains read count data for the pilot SCF experiment. Read counts are provided for each barcode-target pair in each transfection replicate. Within individual transfection replicates, reads counts in each FACS bin are provided.
Supplementary files format and content: short_HL_TF_count_table.csv contains read count data for the short half-life transcription factor experiment. Read counts are provided for each barcode-target pair in each transfection replicate. Within individual transfection replicates, reads counts in each FACS bin are provided.
Library strategy: amplicon sequencing

growth_protocol: K562 cells (CCL-243) were purchased from ATCC and maintained in RPMI 1640 medium (Gibco) supplied with 10% FBS (Hyclone) and penicillin/streptomycin (Gibco, 100 U/ mL).

extract_protocol:
Genomic DNA was extracted using the Qiagen Dneasy Blood and Tissue kit from sorted K562-rtTA-Cas9 cells that had been partitioned by FACS based on GFP:mCherry ratio.
Subassembly of ORF-barcode pairs: Plasmid libraries with gRNAs, barcodes, and ORFs were tagmented with N5 loaded Tn5 transposase (Diagenode). DNA fragments containing ORF-barcode information were enriched from the tagmented plasmid by two-step PCR. The first round of PCR utilized a primer that hybridizes upstream of the barcode region as well as an N5 specific primer that hybridizes to the tagmentation event. First round products were cleaned using Ampure beads and eluted in Qiagen EB. The second round completed the amplicon by adding sample indexes and Illumina sequencing adapters. PCR products were run on a pre-cast 6% TBE polyacrylamide gel (Thermo), and DNA fragments ranging in size from 400-1000 base pairs were excised from the gel and purified. The resulting library was quantified and sequenced on an Illumina instrument. Generation of gRNA-barcode Illumina amplicons: Genomic DNA was extracted from pellets of frozen cells using a DNEasy Blood and Tissue kit (Qiagen, 69504). Illumina amplicons containing gRNA and barcode information were amplified using two-step PCR. In the first round of PCR, genomic DNA from each bin was divided between eight 50 uL PCR reactions and amplified with primers that hybridize to the COMET construct upstream of the gRNA and downstream of the barcode. The eight PCRs were pooled, cleaned with 1X Ampure beads, and eluted in Qiagen EB. The eluted first round product was amplified with primers that added sample indexes and Illumina sequencing adapters. Final amplicons were again Ampure cleaned, quantified, and sequenced on an Illumina instrument.

value: lymphoblast

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

value: CRISPRcut

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470870

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod


title: AdultSample3_Saliva

description: Processed data file column header: 34

tag: tissue

tag: Sex

tag: age


title: SL470872

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: epm rawdatafile


title: SL470871

tag: tissue

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: epm boli

value: IN

tag: latency score_day6

tag: pca index_day6only

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: loco box

tag: dob

tag: dod

tag: failed qc

value: incongruous sex label vs. sex chromosome gene expression


title: AdultSample37_Saliva

description: Processed data file column header: 374

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR4_B4_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: shortHL_CRISPRcut_Day12_TR4_B4_R4


title: AdultSample27_Saliva

description: Processed data file column header: 274

value: Male


title: AdultSample40_Buccal

description: Processed data file column header: 403


title: AdultSample20_PBMC

description: Processed data file column header: 201

value: PBMC


title: AdultSample73_Buccal

description: Processed data file column header: 733


title: AdultSample73_PBMC

description: Processed data file column header: 731


title: SL470868

value: hippocampus

tag: hippocampal siide used

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: SL470869

tag: tissue

tag: hippocampal siide used

value: right

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: loco box

tag: dob

tag: dod


title: AdultSample73_DBS

description: Processed data file column header: 732

tag: tissue

value: DBS

tag: Sex

value: Female

tag: age


title: AdultSample64_PBMC

description: Processed data file column header: 641


title: shortHL_CRISPRcut_Day12_TR4_B4_R1

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470867

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample64_Buccal

description: Processed data file column header: 643

tag: tissue

value: Buccal

tag: Sex

tag: age


title: AdultSample64_DBS

description: Processed data file column header: 642


title: shortHL_CRISPRcut_Day12_TR4_B3_R4

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470866

tag: hippocampal siide used

value: left

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: AdultSample20_Buccal

description: Processed data file column header: 203

tag: tissue

tag: Sex

tag: age


title: AdultSample77_Buccal

description: Processed data file column header: 773


title: SL470865

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample77_PBMC

description: Processed data file column header: 771

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR4_B3_R2

tag: cell line

tag: cell type

value: lymphoblast

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample76_Saliva

description: Processed data file column header: 764

value: Saliva


title: AdultSample77_Saliva

description: Processed data file column header: 774


title: AdultSample76_PBMC

description: Processed data file column header: 761


title: SL470864

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR4_B2_R4

tag: cell line

tag: cell type

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

value: CRISPRcut

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample76_Buccal

description: Processed data file column header: 763

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR4_B3_R1


title: SL470862

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample76_DBS

description: Processed data file column header: 762

tag: tissue

tag: Sex

tag: age


title: AdultSample75_DBS

description: Processed data file column header: 752


title: AdultSample75_Saliva

description: Processed data file column header: 754


title: SL470861

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR4_B2_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: shortHL_CRISPRcut_Day12_TR4_B2_R2


title: AdultSample75_PBMC

description: Processed data file column header: 751

tag: tissue

tag: Sex

tag: age


title: AdultSample75_Buccal

description: Processed data file column header: 753


title: shortHL_CRISPRcut_Day12_TR4_B3_R3


title: AdultSample70_DBS

description: Processed data file column header: 702


title: SL470859

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack

tag: failed qc

value: incongruous sex label vs. sex chromosome gene expression


title: shortHL_CRISPRcut_Day12_TR4_B1_R4

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample77_DBS

description: Processed data file column header: 772

tag: tissue

tag: Sex

tag: age


title: SL470860

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: IN

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample70_PBMC

description: Processed data file column header: 701

tag: tissue

value: PBMC

tag: Sex

tag: age


title: AdultSample70_Saliva

description: Processed data file column header: 704


title: AdultSample70_Buccal

description: Processed data file column header: 703


title: shortHL_CRISPRcut_Day12_TR4_B2_R1

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample68_Buccal

description: Processed data file column header: 683


title: SL470863

value: hippocampus

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: SL470857

tag: tissue

tag: hippocampal siide used

tag: Sex

value: Male

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample68_DBS

description: Processed data file column header: 682

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR4_B1_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample68_Saliva

description: Processed data file column header: 684


title: AdultSample68_PBMC

description: Processed data file column header: 681


title: AdultSample66_Saliva

description: Processed data file column header: 664


title: AdultSample66_Buccal

description: Processed data file column header: 663


title: shortHL_CRISPRcut_Day12_TR3_B4_R4


title: shortHL_CRISPRcut_Day12_TR4_B1_R1


title: AdultSample66_DBS

description: Processed data file column header: 662


title: SL470855

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: GT

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: SL470854

tag: tissue

tag: hippocampal siide used

value: right

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample56_Buccal

description: Processed data file column header: 563

tag: tissue

value: Buccal

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR3_B4_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470853

tag: hippocampal siide used

value: left

value: Female

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample56_PBMC

description: Processed data file column header: 561

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR3_B4_R2

tag: cell line

tag: cell type

value: lymphoblast

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470852

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample56_DBS

description: Processed data file column header: 562

tag: tissue

value: DBS

tag: Sex

tag: age


title: AdultSample54_PBMC

description: Processed data file column header: 541


title: shortHL_CRISPRcut_Day12_TR3_B4_R1

tag: cell line

tag: cell type

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

value: CRISPRcut

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470858

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR4_B1_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample54_Saliva

description: Processed data file column header: 544

tag: tissue

value: Saliva

tag: Sex

tag: age


title: SL470851

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample54_DBS

description: Processed data file column header: 542

tag: tissue

tag: Sex

tag: age


title: AdultSample54_Buccal

description: Processed data file column header: 543


title: SL470850

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack

tag: failed qc

value: very high library size/PF read


title: SL470856

tag: tissue

value: hippocampus

tag: hippocampal siide used

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

value: IN

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample66_PBMC

description: Processed data file column header: 661

tag: tissue

value: PBMC

tag: Sex

value: Male

tag: age


title: shortHL_CRISPRcut_Day12_TR3_B3_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample53_PBMC

description: Processed data file column header: 531


title: SL470849

tag: hippocampal siide used

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample53_Saliva

description: Processed data file column header: 534

tag: tissue

tag: Sex

tag: age


title: SL470848

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR3_B3_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample56_Saliva

description: Processed data file column header: 564

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR3_B3_R1


title: AdultSample52_DBS

description: Processed data file column header: 522


title: AdultSample52_Saliva

description: Processed data file column header: 524


title: shortHL_CRISPRcut_Day12_TR3_B2_R4


title: AdultSample53_Buccal

description: Processed data file column header: 533

value: Buccal


title: AdultSample52_Buccal

description: Processed data file column header: 523


title: AdultSample51_DBS

description: Processed data file column header: 512


title: AdultSample52_PBMC

description: Processed data file column header: 521


title: shortHL_CRISPRcut_Day12_TR3_B3_R4


title: SL470601

tag: hippocampal siide used

value: left

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: One

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample51_Buccal

description: Processed data file column header: 513

tag: tissue

tag: Sex

tag: age


title: AdultSample51_PBMC

description: Processed data file column header: 511


title: SL470600

tag: hippocampal siide used

value: right

value: Female

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR3_B2_R2

tag: cell line

tag: cell type

value: lymphoblast

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample51_Saliva

description: Processed data file column header: 514

tag: tissue

tag: Sex

tag: age


title: AdultSample50_Buccal

description: Processed data file column header: 503


title: SL470599

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: GT

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR3_B2_R1

tag: cell line

tag: cell type

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

value: CRISPRcut

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample50_DBS

description: Processed data file column header: 502

tag: tissue

value: DBS

tag: Sex

tag: age


title: SL470602

value: hippocampus

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR3_B1_R4

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample53_DBS

description: Processed data file column header: 532

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR3_B1_R3


title: SL470598

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: IN

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample46_Saliva

description: Processed data file column header: 464

tag: tissue

value: Saliva

tag: Sex

tag: age


title: AdultSample46_PBMC

description: Processed data file column header: 461

value: PBMC


title: SL470597

tag: hippocampal siide used

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR3_B1_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470847

tag: tissue

tag: hippocampal siide used

tag: Sex

value: Male

tag: age(days)

tag: animal strain

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample46_DBS

description: Processed data file column header: 462

tag: tissue

tag: Sex

tag: age


title: SL470596

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: shortHL_CRISPRcut_Day12_TR3_B1_R1

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample46_Buccal

description: Processed data file column header: 463

tag: tissue

value: Buccal

tag: Sex

tag: age


title: SL470595

tag: hippocampal siide used

value: left

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: One

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample35_DBS

description: Processed data file column header: 352

tag: tissue

tag: Sex

value: Female

tag: age


title: AdultSample35_PBMC

description: Processed data file column header: 351


title: shortHL_CRISPRcut_Day12_TR2_B4_R4

tag: cell line

tag: cell type

value: lymphoblast

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample35_Buccal

description: Processed data file column header: 353


title: AdultSample49_PBMC

description: Processed data file column header: 491


title: AdultSample29_Saliva

description: Processed data file column header: 294


title: AdultSample29_PBMC

description: Processed data file column header: 291


title: SL470594

tag: hippocampal siide used

value: right

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod


title: AdultSample49_Buccal

description: Processed data file column header: 493

tag: tissue

tag: Sex

tag: age


title: SL470592

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: epm testorderbyday

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample49_DBS

description: Processed data file column header: 492

tag: tissue

tag: Sex

tag: age


title: shortHL_CRISPRcut_Day12_TR2_B4_R1

tag: cell line

tag: cell type

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: shortHL_CRISPRcut_Day12_TR3_B2_R3

value: CRISPRcut


title: AdultSample29_DBS

description: Processed data file column header: 292

value: DBS


title: AdultSample28_Buccal

description: Processed data file column header: 283


title: shortHL_CRISPRcut_Day12_TR2_B3_R4


title: shortHL_CRISPRcut_Day12_TR2_B3_R3


title: AdultSample28_PBMC

description: Processed data file column header: 281


title: SL470590

value: hippocampus

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: GT

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco box

tag: dob

tag: dod

tag: failed qc

value: low RIN


title: shortHL_CRISPRcut_Day12_TR2_B4_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample35_Saliva

description: Processed data file column header: 354

tag: tissue

value: Saliva

tag: Sex

tag: age


title: AdultSample28_Saliva

description: Processed data file column header: 284


title: SL470593

tag: hippocampal siide used

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample28_DBS

description: Processed data file column header: 282

tag: tissue

tag: Sex

tag: age


title: SL470589

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: loco box

tag: dob

tag: dod


title: AdultSample25_DBS

description: Processed data file column header: 252

tag: tissue

tag: Sex

value: Male

tag: age


title: SL470588

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR2_B3_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: shortHL_CRISPRcut_Day12_TR2_B3_R1


title: AdultSample25_Buccal

description: Processed data file column header: 253

tag: tissue

tag: Sex

tag: age


title: AdultSample29_Buccal

description: Processed data file column header: 293


title: AdultSample25_Saliva

description: Processed data file column header: 254


title: AdultSample21_Saliva

description: Processed data file column header: 214


title: shortHL_CRISPRcut_Day12_TR2_B4_R3


title: shortHL_CRISPRcut_Day12_TR2_B2_R4


title: AdultSample21_DBS

description: Processed data file column header: 212


title: SL470587

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: IN

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: AdultSample21_Buccal

description: Processed data file column header: 213

tag: tissue

value: Buccal

tag: Sex

tag: age


title: SL470586

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: ST

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR2_B2_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470591

tag: tissue

tag: hippocampal siide used

value: left

tag: Sex

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: One

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: AdultSample21_PBMC

description: Processed data file column header: 211

tag: tissue

value: PBMC

tag: Sex

value: Female

tag: age


title: SL470585

tag: hippocampal siide used

value: right

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: Two

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: AdultSample25_PBMC

description: Processed data file column header: 251

tag: tissue

tag: Sex

tag: age


title: AdultSample19_DBS

description: Processed data file column header: 192

value: DBS


title: shortHL_CRISPRcut_Day12_TR2_B2_R2

tag: cell line

tag: cell type

value: lymphoblast

tag: genotype

value: Cas9 and rtTA

tag: group

tag: perturbation

value: CRISPRcut

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470584

value: hippocampus

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: GT

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: AdultSample19_PBMC

description: Processed data file column header: 191

tag: tissue

tag: Sex

tag: age


title: AdultSample19_Saliva

description: Processed data file column header: 194

value: Saliva


title: shortHL_CRISPRcut_Day12_TR2_B2_R1

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: SL470583

tag: hippocampal siide used

tag: age(days)

tag: animal strain

value: F2 cross of bred Low Responders and bred High Responders

tag: generation

value: F2 cross

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR2_B1_R4

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample17_DBS

description: Processed data file column header: 172

tag: tissue

tag: Sex

tag: age


title: SL470582

tag: hippocampal siide used

value: Male

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

value: IN

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: epm testorderbyday

tag: loco box

tag: dob

tag: dod


title: AdultSample17_Buccal

description: Processed data file column header: 173

tag: tissue

value: Buccal

tag: Sex

tag: age


title: AdultSample15_DBS

description: Processed data file column header: 152


title: shortHL_CRISPRcut_Day12_TR2_B1_R3

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate


title: AdultSample15_PBMC

description: Processed data file column header: 151


title: AdultSample15_Saliva

description: Processed data file column header: 154


title: SL470581

tag: hippocampal siide used

tag: age(days)

tag: animal strain

tag: generation

tag: rat number

tag: family

tag: hpc dissection_date

tag: hpc dissection_day

tag: dissector

value: One

tag: rnaconc

tag: pf reads

tag: ribosomeperc

tag: mrnaperc

tag: rin

tag: percent coding

tag: percent utr

tag: percent intronic

tag: percent intergenic

tag: pct usable_bases

tag: median cv_coverage

tag: lateral locoscore

tag: rearing locoscore

tag: total locoscore

tag: epm percent_time_open_arm

tag: epm boli

tag: epm distancetraveled

tag: epm time_immobile

tag: learningclassification

tag: pca index_days6and_7

tag: response bias_day7

tag: prob diff_day7

tag: latency score_day7

tag: pca index_day7only

tag: response bias_day6

tag: prob diff_day6

tag: latency score_day6

tag: pca index_day6only

tag: epm rawdatafile

tag: epm trial

tag: epm testdate

tag: epm testday

tag: loco testdate

tag: loco testday

tag: loco batch

tag: loco rack


title: shortHL_CRISPRcut_Day12_TR2_B1_R2

tag: cell line

tag: cell type

tag: genotype

tag: group

tag: perturbation

tag: sort day

tag: transfection replicate

tag: facs bin

tag: pcr replicate