title: A3703_0669_AD3_NOC_Tunicamycin_R2

description: Library name: A3703_0669

value: Tunicamycin


title: A3703_0667_AD3_NOC_Taxol_R1

status: Public on Apr 30 2025

type: SRA

city: Cardiff

first: Frank

last: Wessely

address: Maindy Road

department: UK DRI

country: United Kingdom

institute: Cardiff University

description: Library name: A3703_0667

library_source: transcriptomic

data_processing:
Raw reads were trimmed for adapter or poly-A sequences by cutadapt (v4.9) (options: -a AGATCGGAAGAGCACACGTCTGAACTCCAGTCA --poly-a --times 2 --minimum-length 23). Trimmed reads were mapped with Salmon (v1.10.0) to a human decoy-aware transcriptome based on Ensembl release 112 (combined cDNA and ncRNA, alternative sequences with Ensembl location ‘HSCHR’ removed, ERCC spike-ins added, entire genome as decoy sequence). Salmon index was generated with k-mer length -k 23, due to shorter read length (50 or 51bp), and mapping options --noLengthCorrection--softclip were used.
Assembly: GRCh38
Supplementary files format and content: TAB-delimited text files contain Salmon output providing transcript quantifiaction (Name, ensembl transcript ID; Length, length of transcript; EffectiveLength, effective length of transcript; TPM, Salmon-computed transcripts per million; NumReads, number of mapped reads)

molecule: total RNA

organism: Homo sapiens

extract_protocol:
Total RNA was isolated from frozen cell lysates and distributed across 18 96-well plates.
Extracted total RNA was used to generate cDNA libraries following the manufacturer’s instructions for the QuantSeq 3’ mRNA-Seq Library Prep Kit FWD for Illumina (Lexogen, Austria, upgraded protocol Feb 2017). Libraries were amplified (16 PCR cycles) and ERCC Spike-In Control Mixes (92 transcripts, ThermoFisher 4456740) were added.

treatment_protocol: Cell cultures for individual compound or control treatments were grown and maintained in separate wells on 24-well plates using 400 µl of appropriate medium (14 wells per cell line and replicate, 126 samples per cell type). The day before compound treatment cells were fed with 400 µl of their respective medium. Compound dilutions were prepared immediately before starting the experiment, where compounds were thawed by putting them at room temperature, mixed/vortexed and centrifuged quickly to gather all liquid at the bottom of the tube. For all compounds, except lithium, 1X compound solutions were prepared in cell culture medium (without DMSO) by adding 2.5 µl of compound into 2497.5 µl of cell culture medium. For lithium, 1X compound solutions were prepared in cell culture medium (containing 0.1% DMSO) by adding 2.5 µl of compound into 2497.5 µl of cell culture medium. For vehicle control, 4 µl of pure DMSO was added to 3996 µl of cell culture medium. All dilutions were warmed up in the 37°C incubator for 10 min prior to application onto the cells. For each well, the entire cell culture medium was removed and 400 µl of diluted (1X) compound or vehicle control added gently. After 7 hours of compound incubation, cells were washed with 400 µl sterile PBS at room temperature and 90 µl RLT buffer was added per well (RLT from Qiagen RNeasy Mini Kit, Cat. No. 74106 or RLT alone from Qiagen, Cat. No. 79216). Cell lysates were transferred directly onto a QIA shredder spin column (Qiagen Cat. No. 79656) placed in 2 ml collection tubes, and centrifuged for 2 min at full speed (approx. 16,000 x g) at room temperature. The flow-through was collected into a tube and frozen at -80°C, shredder column was discarded.

tag: cell line

tag: cell type

value: iPSC-derived nociceptors

tag: Sex

value: F

tag: treatment

value: Taxol

tag: dose in_µm

tag: replicate

tag: plate

tag: well


title: A3703_0666_AD3_NOC_Vorinostat_R1

description: Library name: A3703_0666

value: Vorinostat


title: A3703_0664_AD2_SMC_LiCl_R2

description: Library name: A3703_0664

value: iPSC-derived smooth muscle cells

value: M

value: Lithium chloride


title: A3703_0665_AD2_SMC_ThiametG_R2

description: Library name: A3703_0665

value: Thiamet-G


title: A3703_0662_840_SMC_DMSO_R3

description: Library name: A3703_0662

value: DMSO


title: A3703_0660_840_SMC_LiCl_R3

description: Library name: A3703_0660


title: A3703_0663_AD2_SMC_Compound81_R1

description: Library name: A3703_0663

value: Compound 81


title: A3703_0661_840_SMC_Rosiglitazone_R3

description: Library name: A3703_0661

value: Rosiglitazone


title: A3703_0657_AD3_MAC_17AAG_R3

description: Library name: A3703_0657

value: iPSC-derived macrophages


title: A3703_0659_840_SMC_Rosiglitazone_R2

description: Library name: A3703_0659


title: A3703_0658_840_MAC_Bardoxolone_R1

description: Library name: A3703_0658

value: Bardoxolone methyl


title: A3703_0656_AD3_MAC_Rosiglitazone_R3

description: Library name: A3703_0656


title: A3703_0655_AD3_MAC_Compound81_R3

description: Library name: A3703_0655


title: A3703_0654_AD2_MAC_Taxol_R3

description: Library name: A3703_0654


title: A3703_0653_AD2_MAC_Rapamycin_R3

description: Library name: A3703_0653

value: Rapamycin


title: A3703_0652_AD2_MAC_A971432_R2

description: Library name: A3703_0652


title: A3703_0668_AD3_NOC_17AAG_R1

description: Library name: A3703_0668


title: A3703_0650_AD2_HEP_Taxol_R2

description: Library name: A3703_0650

value: iPSC-derived hepatocytes


title: A3703_0649_AD2_HEP_ThiametG_R2

description: Library name: A3703_0649


title: A3703_0651_AD2_HEP_Rapamycin_R3

description: Library name: A3703_0651


title: A3703_0648_AD2_HEP_Compound81_R2

description: Library name: A3703_0648


title: A3703_0646_840_HEP_DMSO_R1

description: Library name: A3703_0646


title: A3703_0647_AD3_HEP_Tunicamycin_R2

description: Library name: A3703_0647


title: A3703_0645_MCF_MCF_Bardoxolone_R3

description: Library name: A3703_0645


title: A3703_0643_AD3_CXN_Rapamycin_R3

description: Library name: A3703_0643

value: iPSC-derived cortical neurons


title: A3703_0639_AD2_CXN_Taxol_R2

description: Library name: A3703_0639


title: A3703_0644_840_CXN_Compound81_R3

description: Library name: A3703_0644


title: A3703_0642_AD3_CXN_Vorinostat_R3

description: Library name: A3703_0642


title: A3703_0641_AD2_CXN_Compound81_R3

description: Library name: A3703_0641


title: A3703_0640_840_CXN_Compound81_R2

description: Library name: A3703_0640


title: A3703_0637_AD3_END_ThiametG_R3

description: Library name: A3703_0637

value: iPSC-derived endothelial cells


title: A3703_0636_840_END_DMSO_R2

description: Library name: A3703_0636


title: A3703_0638_AD2_CXN_A971432_R2

description: Library name: A3703_0638


title: A3703_0633_AD2_END_Rapamycin_R1

description: Library name: A3703_0633


title: A3703_0632_AD2_END_LiCl_R1

description: Library name: A3703_0632


title: A3703_0631_AD2_END_Compound81_R1

description: Library name: A3703_0631


title: A3703_0635_AD3_END_A971432_R1

description: Library name: A3703_0635


title: A3703_0629_AD2_DOP_Rapamycin_R3

description: Library name: A3703_0629

value: iPSC-derived dopaminergic neurons


title: A3703_0630_AD2_DOP_Rosiglitazone_R3

description: Library name: A3703_0630


title: A3703_0628_AD2_DOP_ThiametG_R2

description: Library name: A3703_0628


title: A3703_0634_AD3_END_Bardoxolone_R1

description: Library name: A3703_0634

value: F


title: A3703_0626_840_DOP_DMSO_R1

description: Library name: A3703_0626


title: A3703_0625_840_DOP_Taxol_R1

description: Library name: A3703_0625

value: Taxol


title: A3703_0624_840_DOP_Tunicamycin_R1

description: Library name: A3703_0624

value: Tunicamycin


title: A3703_0627_840_DOP_Compound81_R2

description: Library name: A3703_0627


title: A3703_0623_840_CAM_Rosiglitazone_R3

description: Library name: A3703_0623

value: iPSC-derived cardiomyocytes


title: A3703_0622_840_CAM_Tunicamycin_R3

description: Library name: A3703_0622


title: A3703_0620_AD3_CAM_A971432_R2

description: Library name: A3703_0620


title: A3703_0621_840_CAM_A366_R3

description: Library name: A3703_0621


title: A3703_0619_AD3_CAM_Tunicamycin_R1

description: Library name: A3703_0619


title: A3703_0618_AD2_CAM_DMSO_R1

description: Library name: A3703_0618

value: M


title: A3703_0617_840_CAM_Taxol_R1

description: Library name: A3703_0617


title: A3703_0615_MCF_MCF_Rosiglitazone_R1

description: Library name: A3703_0615


title: A3703_0614_MCF_MCF_Compound81_R1

description: Library name: A3703_0614


title: A3703_0610_840_POD_Compound81_R1

description: Library name: A3703_0610

value: iPSC-derived podocytes


title: A3703_0609_AD3_POD_Rosiglitazone_R1

description: Library name: A3703_0609


title: A3703_0611_840_POD_17AAG_R1

description: Library name: A3703_0611


title: A3703_0608_AD3_POD_Bardoxolone_R1

description: Library name: A3703_0608


title: A3703_0607_840_PTL_Tunicamycin_R3

description: Library name: A3703_0607

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0605_AD3_PTL_Rapamycin_R3

description: Library name: A3703_0605


title: A3703_0604_AD2_PTL_Rosiglitazone_R3

description: Library name: A3703_0604


title: A3703_0603_AD2_PTL_A971432_R3

description: Library name: A3703_0603


title: A3703_0602_840_PTL_Rapamycin_R2

description: Library name: A3703_0602


title: A3703_0601_AD3_PTL_Vorinostat_R2

description: Library name: A3703_0601

value: Vorinostat


title: A3703_0599_AD2_PTL_Rosiglitazone_R1

description: Library name: A3703_0599


title: A3703_0600_840_PTL_A366_R1

description: Library name: A3703_0600


title: A3703_0597_840_IPS_Rosiglitazone_R2

description: Library name: A3703_0597

value: undifferentiated iPSC


title: A3703_0598_840_IPS_Bardoxolone_R3

description: Library name: A3703_0598


title: A3703_0596_840_IPS_LiCl_R2

description: Library name: A3703_0596

value: Lithium chloride


title: A3703_0594_AD3_IPS_ThiametG_R2

description: Library name: A3703_0594

value: Thiamet-G


title: A3703_0595_AD2_IPS_A971432_R2

description: Library name: A3703_0595


title: A3703_0591_840_NPC_A366_R3

description: Library name: A3703_0591

value: iPSC-derived neural progenitors


title: A3703_0616_840_CAM_Rapamycin_R1

description: Library name: A3703_0616

value: Rapamycin


title: A3703_0592_AD3_IPS_Bardoxolone_R1

description: Library name: A3703_0592

value: Bardoxolone methyl


title: A3703_0588_AD2_NPC_Tunicamycin_R2

description: Library name: A3703_0588


title: A3703_0590_840_NPC_Rapamycin_R2

description: Library name: A3703_0590


title: A3703_0613_840_AST_17AAG_R1

description: Library name: A3703_0613

value: iPSC-derived astrocytes


title: A3703_0612_AD2_POD_17AAG_R2

description: Library name: A3703_0612


title: A3703_0587_AD2_NPC_Compound81_R1

description: Library name: A3703_0587

value: Compound 81


title: A3703_0586_AD3_NPC_A366_R2

description: Library name: A3703_0586


title: A3703_0585_AD3_NPC_Taxol_R1

description: Library name: A3703_0585


title: A3703_0606_AD3_PTL_Taxol_R3

description: Library name: A3703_0606


title: A3703_0584_840_AST_DMSO_R3

description: Library name: A3703_0584

value: DMSO


title: A3703_0582_840_AST_DMSO_R1

description: Library name: A3703_0582

value: F


title: A3703_0583_840_AST_Taxol_R2

description: Library name: A3703_0583

value: Taxol


title: A3703_0580_AD2_AST_DMSO_R3

description: Library name: A3703_0580


title: A3703_0581_AD3_HEP_DMSO_R1

description: Library name: A3703_0581

value: iPSC-derived hepatocytes


title: A3703_0579_AD2_AST_Rosiglitazone_R3

description: Library name: A3703_0579

value: Rosiglitazone


title: A3703_0577_AD3_AST_A366_R3

description: Library name: A3703_0577


title: A3703_0578_AD2_AST_LiCl_R1

description: Library name: A3703_0578

value: M


title: A3703_0574_AD3_NOC_17AAG_R2

description: Library name: A3703_0574

value: iPSC-derived nociceptors


title: A3703_0573_AD3_NOC_Taxol_R2

description: Library name: A3703_0573


title: A3703_0593_AD2_IPS_Tunicamycin_R1

description: Library name: A3703_0593

value: Tunicamycin


title: A3703_0576_AD2_NOC_Compound81_R1

description: Library name: A3703_0576


title: A3703_0571_AD3_NOC_DMSO_R1

description: Library name: A3703_0571


title: A3703_0569_AD3_SMC_DMSO_R3

description: Library name: A3703_0569

value: iPSC-derived smooth muscle cells


title: A3703_0570_840_NOC_DMSO_R3

description: Library name: A3703_0570


title: A3703_0568_AD3_SMC_LiCl_R2

description: Library name: A3703_0568


title: A3703_0589_840_NPC_A366_R1

description: Library name: A3703_0589


title: A3703_0566_AD3_SMC_Compound81_R1

description: Library name: A3703_0566


title: A3703_0567_AD3_SMC_Tunicamycin_R1

description: Library name: A3703_0567


title: A3703_0562_840_MAC_Rosiglitazone_R3

description: Library name: A3703_0562

value: iPSC-derived macrophages


title: A3703_0559_AD3_MAC_Rosiglitazone_R1

description: Library name: A3703_0559


title: A3703_0560_AD3_MAC_DMSO_R3

description: Library name: A3703_0560


title: A3703_0563_AD2_SMC_Vorinostat_R1

description: Library name: A3703_0563

value: Vorinostat


title: A3703_0561_840_MAC_Rapamycin_R3

description: Library name: A3703_0561


title: A3703_0557_AD2_MAC_DMSO_R2

description: Library name: A3703_0557


title: A3703_0565_AD2_SMC_DMSO_R3

description: Library name: A3703_0565


title: A3703_0556_AD2_MAC_Vorinostat_R1

description: Library name: A3703_0556


title: A3703_0553_AD3_HEP_DMSO_R2

description: Library name: A3703_0553


title: A3703_0575_AD3_NOC_ThiametG_R3

description: Library name: A3703_0575

value: Thiamet-G


title: A3703_0554_AD2_HEP_A971432_R2

description: Library name: A3703_0554


title: A3703_0552_840_HEP_Taxol_R1

description: Library name: A3703_0552


title: A3703_0555_AD3_HEP_Tunicamycin_R3

description: Library name: A3703_0555


title: A3703_0564_AD2_SMC_Rapamycin_R2

description: Library name: A3703_0564


title: A3703_0545_AD2_CXN_DMSO_R2

description: Library name: A3703_0545

value: iPSC-derived cortical neurons


title: A3703_0548_AD3_HEP_Bardoxolone_R1

description: Library name: A3703_0548


title: A3703_0558_AD3_MAC_ThiametG_R3

description: Library name: A3703_0558


title: A3703_0540_840_END_Tunicamycin_R3

description: Library name: A3703_0540

value: iPSC-derived endothelial cells


title: A3703_0538_AD3_END_Vorinostat_R3

description: Library name: A3703_0538


title: A3703_0539_AD3_END_ThiametG_R2

description: Library name: A3703_0539


title: A3703_0546_AD2_CXN_Vorinostat_R3

description: Library name: A3703_0546


title: A3703_0537_840_END_LiCl_R2

description: Library name: A3703_0537

value: Lithium chloride


title: A3703_0534_AD2_END_A366_R2

description: Library name: A3703_0534


title: A3703_0536_AD2_END_Taxol_R2

description: Library name: A3703_0536


title: A3703_0531_840_DOP_LiCl_R3

description: Library name: A3703_0531

value: iPSC-derived dopaminergic neurons


title: A3703_0532_840_DOP_Rosiglitazone_R3

description: Library name: A3703_0532


title: A3703_0535_AD2_END_Tunicamycin_R2

description: Library name: A3703_0535


title: A3703_0533_840_DOP_DMSO_R3

description: Library name: A3703_0533


title: A3703_0550_AD3_HEP_Taxol_R1

description: Library name: A3703_0550


title: A3703_0551_840_HEP_LiCl_R1

description: Library name: A3703_0551


title: A3703_0549_AD3_HEP_LiCl_R1

description: Library name: A3703_0549


title: A3703_0529_AD2_DOP_Compound81_R2

description: Library name: A3703_0529

value: Compound 81


title: A3703_0528_840_DOP_17AAG_R1

description: Library name: A3703_0528


title: A3703_0527_840_DOP_Rapamycin_R1

description: Library name: A3703_0527

value: Rapamycin


title: A3703_0547_AD2_CXN_LiCl_R3

description: Library name: A3703_0547


title: A3703_0525_840_CAM_Taxol_R3

description: Library name: A3703_0525

value: iPSC-derived cardiomyocytes

value: F


title: A3703_0544_AD2_CXN_Rosiglitazone_R2

description: Library name: A3703_0544


title: A3703_0542_840_CXN_ThiametG_R1

description: Library name: A3703_0542


title: A3703_0541_AD3_CXN_Bardoxolone_R1

description: Library name: A3703_0541

value: Bardoxolone methyl


title: A3703_0523_AD2_CAM_17AAG_R2

description: Library name: A3703_0523


title: A3703_0524_840_CAM_Compound81_R3

description: Library name: A3703_0524


title: A3703_0572_AD3_NOC_Bardoxolone_R2

description: Library name: A3703_0572


title: A3703_0543_AD2_CXN_A366_R2

description: Library name: A3703_0543


title: A3703_0521_AD3_CAM_Rosiglitazone_R1

description: Library name: A3703_0521

value: Rosiglitazone


title: A3703_0520_AD2_CAM_DMSO_R1

description: Library name: A3703_0520

value: M

value: DMSO


title: A3703_0518_MCF_MCF_LiCl_R2

description: Library name: A3703_0518


title: A3703_0530_AD2_DOP_Rosiglitazone_R2

description: Library name: A3703_0530


title: A3703_0526_AD3_CAM_17AAG_R3

description: Library name: A3703_0526


title: A3703_0512_AD3_POD_Bardoxolone_R2

description: Library name: A3703_0512

value: iPSC-derived podocytes


title: A3703_0510_840_POD_DMSO_R1

description: Library name: A3703_0510


title: A3703_0517_MCF_MCF_Tunicamycin_R2

description: Library name: A3703_0517

value: Tunicamycin


title: A3703_0516_840_POD_Rosiglitazone_R3

description: Library name: A3703_0516


title: A3703_0511_AD2_POD_A366_R2

description: Library name: A3703_0511


title: A3703_0503_AD2_PTL_LiCl_R3

description: Library name: A3703_0503

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0505_840_PTL_LiCl_R3

description: Library name: A3703_0505


title: A3703_0513_AD3_POD_17AAG_R2

description: Library name: A3703_0513


title: A3703_0514_840_POD_DMSO_R2

description: Library name: A3703_0514


title: A3703_0507_AD3_POD_ThiametG_R1

description: Library name: A3703_0507


title: A3703_0509_AD3_POD_DMSO_R1

description: Library name: A3703_0509


title: A3703_0501_840_PTL_A366_R2

description: Library name: A3703_0501


title: A3703_0502_840_PTL_ThiametG_R2

description: Library name: A3703_0502


title: A3703_0500_AD3_PTL_Rosiglitazone_R2

description: Library name: A3703_0500


title: A3703_0522_AD2_CAM_Bardoxolone_R2

description: Library name: A3703_0522


title: A3703_0497_840_PTL_Rapamycin_R1

description: Library name: A3703_0497


title: A3703_0519_840_CAM_A366_R1

description: Library name: A3703_0519


title: A3703_0496_AD2_IPS_A971432_R3

description: Library name: A3703_0496

value: undifferentiated iPSC


title: A3703_0499_AD3_PTL_Rapamycin_R2

description: Library name: A3703_0499


title: A3703_0494_840_NPC_Tunicamycin_R3

description: Library name: A3703_0494

value: iPSC-derived neural progenitors


title: A3703_0493_840_NPC_DMSO_R1

description: Library name: A3703_0493


title: A3703_0495_840_IPS_Rapamycin_R2

description: Library name: A3703_0495


title: A3703_0515_AD3_POD_LiCl_R3

description: Library name: A3703_0515


title: A3703_0492_840_NPC_Rapamycin_R1

description: Library name: A3703_0492


title: A3703_0491_AD2_NPC_Taxol_R3

description: Library name: A3703_0491

value: Taxol


title: A3703_0506_AD3_POD_Tunicamycin_R1

description: Library name: A3703_0506


title: A3703_0504_840_PTL_Vorinostat_R3

description: Library name: A3703_0504

value: Vorinostat


title: A3703_0489_AD2_NPC_A366_R1

description: Library name: A3703_0489


title: A3703_0487_840_AST_Rapamycin_R1

description: Library name: A3703_0487

value: iPSC-derived astrocytes


title: A3703_0490_AD2_NPC_DMSO_R2

description: Library name: A3703_0490


title: A3703_0488_AD3_NPC_Rosiglitazone_R3

description: Library name: A3703_0488


title: A3703_0486_840_AST_Vorinostat_R1

description: Library name: A3703_0486


title: A3703_0484_AD3_AST_17AAG_R3

description: Library name: A3703_0484


title: A3703_0498_AD3_PTL_A971432_R2

description: Library name: A3703_0498


title: A3703_0481_AD3_AST_Bardoxolone_R1

description: Library name: A3703_0481


title: A3703_0482_AD3_AST_Rosiglitazone_R1

description: Library name: A3703_0482


title: A3703_0478_AD3_NOC_Taxol_R3

description: Library name: A3703_0478

value: iPSC-derived nociceptors


title: A3703_0483_AD3_AST_Taxol_R3

description: Library name: A3703_0483


title: A3703_0479_AD2_NOC_Tunicamycin_R1

description: Library name: A3703_0479


title: A3703_0480_AD2_NOC_DMSO_R3

description: Library name: A3703_0480


title: A3703_0485_AD2_AST_Tunicamycin_R2

description: Library name: A3703_0485


title: A3703_0476_840_NOC_Vorinostat_R3

description: Library name: A3703_0476


title: A3703_0474_840_NOC_Vorinostat_R1

description: Library name: A3703_0474


title: A3703_0473_840_NOC_A366_R1

description: Library name: A3703_0473


title: A3703_0475_840_NOC_Vorinostat_R2

description: Library name: A3703_0475


title: A3703_0477_840_NOC_Compound81_R3

description: Library name: A3703_0477

value: Compound 81


title: A3703_0470_AD2_SMC_ThiametG_R3

description: Library name: A3703_0470

value: iPSC-derived smooth muscle cells

value: Thiamet-G


title: A3703_0472_AD3_SMC_Taxol_R3

description: Library name: A3703_0472

value: F


title: A3703_0467_840_SMC_DMSO_R1

description: Library name: A3703_0467


title: A3703_0471_AD3_SMC_A366_R2

description: Library name: A3703_0471


title: A3703_0466_840_SMC_Compound81_R1

description: Library name: A3703_0466


title: A3703_0469_AD2_SMC_Vorinostat_R2

description: Library name: A3703_0469


title: A3703_0468_840_SMC_Tunicamycin_R2

description: Library name: A3703_0468


title: A3703_0465_840_MAC_DMSO_R3

description: Library name: A3703_0465

value: iPSC-derived macrophages


title: A3703_0464_840_MAC_Taxol_R1

description: Library name: A3703_0464


title: A3703_0508_AD3_POD_Taxol_R1

description: Library name: A3703_0508


title: A3703_0463_840_MAC_ThiametG_R1

description: Library name: A3703_0463


title: A3703_0461_840_MAC_A971432_R3

description: Library name: A3703_0461


title: A3703_0462_840_MAC_Tunicamycin_R1

description: Library name: A3703_0462


title: A3703_0459_AD2_MAC_DMSO_R1

description: Library name: A3703_0459


title: A3703_0460_AD3_MAC_Vorinostat_R3

description: Library name: A3703_0460


title: A3703_0458_840_HEP_Compound81_R3

description: Library name: A3703_0458

value: iPSC-derived hepatocytes


title: A3703_0457_AD2_HEP_A971432_R3

description: Library name: A3703_0457

value: M


title: A3703_0456_AD2_HEP_Vorinostat_R3

description: Library name: A3703_0456


title: A3703_0454_AD2_HEP_A366_R1

description: Library name: A3703_0454


title: A3703_0451_AD3_CXN_DMSO_R3

description: Library name: A3703_0451

value: iPSC-derived cortical neurons

value: DMSO


title: A3703_0450_AD3_CXN_DMSO_R3

description: Library name: A3703_0450


title: A3703_0453_AD3_HEP_17AAG_R1

description: Library name: A3703_0453


title: A3703_0452_AD3_HEP_Compound81_R1

description: Library name: A3703_0452


title: A3703_0449_AD3_CXN_LiCl_R3

description: Library name: A3703_0449

value: Lithium chloride


title: A3703_0444_AD2_CXN_Compound81_R1

description: Library name: A3703_0444


title: A3703_0446_AD3_CXN_LiCl_R1

description: Library name: A3703_0446


title: A3703_0448_AD3_CXN_Bardoxolone_R3

description: Library name: A3703_0448

value: Bardoxolone methyl


title: A3703_0445_AD2_CXN_A971432_R1

description: Library name: A3703_0445


title: A3703_0440_840_END_17AAG_R2

description: Library name: A3703_0440

value: iPSC-derived endothelial cells


title: A3703_0443_840_END_A971432_R3

description: Library name: A3703_0443


title: A3703_0442_AD3_END_Bardoxolone_R3

description: Library name: A3703_0442


title: A3703_0447_AD2_CXN_DMSO_R3

description: Library name: A3703_0447


title: A3703_0438_AD2_END_LiCl_R3

description: Library name: A3703_0438


title: A3703_0439_AD3_END_Tunicamycin_R1

description: Library name: A3703_0439

value: Tunicamycin


title: A3703_0441_840_END_DMSO_R2

description: Library name: A3703_0441


title: A3703_0437_AD2_END_17AAG_R1

description: Library name: A3703_0437


title: A3703_0434_840_DOP_Bardoxolone_R3

description: Library name: A3703_0434

value: iPSC-derived dopaminergic neurons


title: A3703_0436_AD3_DOP_A366_R3

description: Library name: A3703_0436


title: A3703_0435_840_DOP_Compound81_R3

description: Library name: A3703_0435


title: A3703_0433_AD3_DOP_ThiametG_R2

description: Library name: A3703_0433


title: A3703_0432_AD3_DOP_Rapamycin_R1

description: Library name: A3703_0432

value: Rapamycin


title: A3703_0455_AD2_HEP_17AAG_R2

description: Library name: A3703_0455


title: A3703_0431_AD3_DOP_Bardoxolone_R1

description: Library name: A3703_0431


title: A3703_0428_AD2_CAM_Rapamycin_R3

description: Library name: A3703_0428

value: iPSC-derived cardiomyocytes


title: A3703_0430_AD2_DOP_Bardoxolone_R1

description: Library name: A3703_0430


title: A3703_0426_AD2_CAM_Rapamycin_R2

description: Library name: A3703_0426


title: A3703_0427_AD3_CAM_ThiametG_R2

description: Library name: A3703_0427


title: A3703_0425_840_CAM_ThiametG_R2

description: Library name: A3703_0425


title: A3703_0421_MCF_MCF_ThiametG_R3

description: Library name: A3703_0421


title: A3703_0424_840_CAM_A971432_R2

description: Library name: A3703_0424


title: A3703_0420_MCF_MCF_Compound81_R3

description: Library name: A3703_0420


title: A3703_0422_MCF_MCF_Taxol_R2

description: Library name: A3703_0422

value: Taxol


title: A3703_0429_AD2_CAM_DMSO_R3

description: Library name: A3703_0429


title: A3703_0423_840_CAM_Bardoxolone_R2

description: Library name: A3703_0423


title: A3703_0417_AD3_POD_Rosiglitazone_R3

description: Library name: A3703_0417

value: iPSC-derived podocytes

value: Rosiglitazone


title: A3703_0416_AD3_POD_Tunicamycin_R2

description: Library name: A3703_0416


title: A3703_0419_840_POD_Tunicamycin_R3

description: Library name: A3703_0419


title: A3703_0415_AD3_POD_Rapamycin_R1

description: Library name: A3703_0415


title: A3703_0418_840_POD_A366_R3

description: Library name: A3703_0418


title: A3703_0413_840_PTL_Compound81_R3

description: Library name: A3703_0413

value: iPSC-derived renal proximal tubular-like cells

value: Compound 81


title: A3703_0412_AD3_PTL_Vorinostat_R3

description: Library name: A3703_0412

value: F

value: Vorinostat


title: A3703_0414_840_PTL_Taxol_R3

description: Library name: A3703_0414


title: A3703_0410_840_PTL_17AAG_R2

description: Library name: A3703_0410


title: A3703_0409_AD2_PTL_17AAG_R1

description: Library name: A3703_0409

value: M


title: A3703_0411_AD2_PTL_A366_R3

description: Library name: A3703_0411


title: A3703_0407_AD2_IPS_Rapamycin_R3

description: Library name: A3703_0407

value: undifferentiated iPSC


title: A3703_0406_AD3_IPS_Vorinostat_R3

description: Library name: A3703_0406


title: A3703_0404_AD2_IPS_ThiametG_R2

description: Library name: A3703_0404

value: Thiamet-G


title: A3703_0408_840_IPS_A971432_R3

description: Library name: A3703_0408


title: A3703_0405_840_IPS_Taxol_R2

description: Library name: A3703_0405


title: A3703_0403_AD2_IPS_Vorinostat_R2

description: Library name: A3703_0403


title: A3703_0400_AD2_IPS_ThiametG_R1

description: Library name: A3703_0400


title: A3703_0402_AD3_IPS_Compound81_R2

description: Library name: A3703_0402


title: A3703_0399_AD3_IPS_Rapamycin_R1

description: Library name: A3703_0399


title: A3703_0398_840_NPC_Vorinostat_R3

description: Library name: A3703_0398

value: iPSC-derived neural progenitors


title: A3703_0401_840_IPS_DMSO_R1

description: Library name: A3703_0401

value: DMSO


title: A3703_0397_840_NPC_Taxol_R2

description: Library name: A3703_0397


title: A3703_0395_AD2_NPC_ThiametG_R3

description: Library name: A3703_0395


title: A3703_0396_840_NPC_Compound81_R1

description: Library name: A3703_0396


title: A3703_0393_AD3_NPC_DMSO_R2

description: Library name: A3703_0393


title: A3703_0391_840_AST_Tunicamycin_R3

description: Library name: A3703_0391

value: iPSC-derived astrocytes


title: A3703_0390_840_AST_LiCl_R1

description: Library name: A3703_0390

value: Lithium chloride


title: A3703_0392_AD3_NPC_Vorinostat_R1

description: Library name: A3703_0392


title: A3703_0394_AD2_NPC_Vorinostat_R2

description: Library name: A3703_0394


title: A3703_0389_AD2_AST_17AAG_R2

description: Library name: A3703_0389


title: A3703_0387_AD3_AST_LiCl_R3

description: Library name: A3703_0387


title: A3703_0388_AD2_AST_DMSO_R1

description: Library name: A3703_0388


title: A3703_0384_840_NPC_Tunicamycin_R2

description: Library name: A3703_0384

value: Tunicamycin


title: A3703_0385_AD3_AST_A971432_R1

description: Library name: A3703_0385


title: A3703_0380_840_CAM_Tunicamycin_R1

description: Library name: A3703_0380


title: A3703_0386_AD3_AST_ThiametG_R1

description: Library name: A3703_0386


title: A3703_0381_AD2_MAC_ThiametG_R2

description: Library name: A3703_0381

value: iPSC-derived macrophages


title: A3703_0382_AD2_MAC_17AAG_R2

description: Library name: A3703_0382


title: A3703_0383_AD2_AST_Rapamycin_R1

description: Library name: A3703_0383

value: Rapamycin


title: A3703_0379_AD3_IPS_A366_R2

description: Library name: A3703_0379


title: A3703_0377_MCF_MCF_A366_R1

description: Library name: A3703_0377


title: A3703_0378_AD3_NOC_Vorinostat_R3

description: Library name: A3703_0378

value: iPSC-derived nociceptors


title: A3703_0375_AD3_DOP_17AAG_R1

description: Library name: A3703_0375

value: iPSC-derived dopaminergic neurons


title: A3703_0374_840_AST_17AAG_R2

description: Library name: A3703_0374


title: A3703_0373_840_HEP_LiCl_R2

description: Library name: A3703_0373

value: iPSC-derived hepatocytes


title: A3703_0376_AD2_SMC_Rosiglitazone_R1

description: Library name: A3703_0376

value: iPSC-derived smooth muscle cells

value: Rosiglitazone


title: A3703_0370_AD2_MAC_Bardoxolone_R1

description: Library name: A3703_0370

value: Bardoxolone methyl


title: A3703_0371_MCF_MCF_Rapamycin_R1

description: Library name: A3703_0371

value: F


title: A3703_0367_AD3_CXN_DMSO_R2

description: Library name: A3703_0367

value: iPSC-derived cortical neurons


title: A3703_0372_840_PTL_17AAG_R1

description: Library name: A3703_0372

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0369_840_END_Bardoxolone_R3

description: Library name: A3703_0369

value: iPSC-derived endothelial cells


title: A3703_0368_840_PTL_DMSO_R2

description: Library name: A3703_0368


title: A3703_0366_AD3_MAC_Rapamycin_R3

description: Library name: A3703_0366


title: A3703_0365_AD2_SMC_DMSO_R3

description: Library name: A3703_0365

value: M


title: A3703_0362_840_CAM_Compound81_R2

description: Library name: A3703_0362

value: iPSC-derived cardiomyocytes

value: Compound 81


title: A3703_0361_AD3_HEP_Compound81_R3

description: Library name: A3703_0361


title: A3703_0360_840_CXN_LiCl_R2

description: Library name: A3703_0360

value: Lithium chloride


title: A3703_0359_AD2_NOC_A971432_R1

description: Library name: A3703_0359


title: A3703_0363_840_PTL_Compound81_R2

description: Library name: A3703_0363


title: A3703_0357_AD3_POD_Compound81_R3

description: Library name: A3703_0357

value: iPSC-derived podocytes


title: A3703_0356_840_POD_A366_R1

description: Library name: A3703_0356


title: A3703_0354_AD2_POD_Tunicamycin_R2

description: Library name: A3703_0354

value: Tunicamycin


title: A3703_0355_AD2_MAC_Tunicamycin_R3

description: Library name: A3703_0355

value: iPSC-derived macrophages


title: A3703_0348_AD2_END_Vorinostat_R2

description: Library name: A3703_0348

value: Vorinostat


title: A3703_0352_AD2_CXN_Tunicamycin_R2

description: Library name: A3703_0352


title: A3703_0350_840_PTL_Bardoxolone_R1

description: Library name: A3703_0350


title: A3703_0345_AD2_CAM_LiCl_R3

description: Library name: A3703_0345


title: A3703_0353_840_DOP_Rapamycin_R3

description: Library name: A3703_0353

value: iPSC-derived dopaminergic neurons

value: Rapamycin


title: A3703_0349_840_SMC_17AAG_R2

description: Library name: A3703_0349

value: iPSC-derived smooth muscle cells


title: A3703_0341_AD3_SMC_17AAG_R1

description: Library name: A3703_0341


title: A3703_0344_840_MAC_Bardoxolone_R3

description: Library name: A3703_0344


title: A3703_0340_AD3_END_Taxol_R3

description: Library name: A3703_0340

value: Taxol


title: A3703_0342_840_HEP_17AAG_R2

description: Library name: A3703_0342

value: iPSC-derived hepatocytes


title: A3703_0337_AD2_CXN_Rosiglitazone_R1

description: Library name: A3703_0337

value: Rosiglitazone


title: A3703_0351_AD3_NPC_Tunicamycin_R3

description: Library name: A3703_0351

value: iPSC-derived neural progenitors

value: F


title: A3703_0343_840_CXN_Bardoxolone_R2

description: Library name: A3703_0343

value: iPSC-derived cortical neurons

value: Bardoxolone methyl


title: A3703_0336_AD2_SMC_Taxol_R1

description: Library name: A3703_0336

value: M


title: A3703_0358_AD2_PTL_Rapamycin_R1

description: Library name: A3703_0358

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0338_AD2_POD_Rosiglitazone_R1

description: Library name: A3703_0338


title: A3703_0347_AD2_IPS_Compound81_R2

description: Library name: A3703_0347

value: undifferentiated iPSC

value: Compound 81


title: A3703_0333_840_NPC_Compound81_R2

description: Library name: A3703_0333


title: A3703_0334_840_DOP_LiCl_R2

description: Library name: A3703_0334

value: Lithium chloride


title: A3703_0332_AD3_END_Vorinostat_R1

description: Library name: A3703_0332

value: iPSC-derived endothelial cells


title: A3703_0364_840_AST_Rosiglitazone_R2

description: Library name: A3703_0364

value: iPSC-derived astrocytes


title: A3703_0330_AD2_NOC_Rosiglitazone_R2

description: Library name: A3703_0330

value: iPSC-derived nociceptors


title: A3703_0346_840_IPS_Vorinostat_R1

description: Library name: A3703_0346

value: Vorinostat


title: A3703_0329_AD3_CXN_A971432_R1

description: Library name: A3703_0329


title: A3703_0331_840_IPS_A366_R3

description: Library name: A3703_0331


title: A3703_0339_840_CAM_A971432_R3

description: Library name: A3703_0339

value: iPSC-derived cardiomyocytes


title: A3703_0326_AD2_NOC_Vorinostat_R2

description: Library name: A3703_0326


title: A3703_0327_AD2_DOP_17AAG_R3

description: Library name: A3703_0327

value: iPSC-derived dopaminergic neurons


title: A3703_0328_AD2_END_Rosiglitazone_R1

description: Library name: A3703_0328


title: A3703_0325_840_PTL_Bardoxolone_R2

description: Library name: A3703_0325


title: A3703_0323_AD2_NPC_ThiametG_R1

description: Library name: A3703_0323

value: Thiamet-G


title: A3703_0324_840_CXN_Tunicamycin_R2

description: Library name: A3703_0324

value: Tunicamycin


title: A3703_0322_840_HEP_Rapamycin_R3

description: Library name: A3703_0322

value: iPSC-derived hepatocytes

value: Rapamycin


title: A3703_0320_AD3_IPS_Rapamycin_R3

description: Library name: A3703_0320

value: F


title: A3703_0321_840_IPS_Vorinostat_R2

description: Library name: A3703_0321


title: A3703_0318_AD3_CAM_LiCl_R1

description: Library name: A3703_0318


title: A3703_0319_AD2_SMC_Tunicamycin_R3

description: Library name: A3703_0319

value: iPSC-derived smooth muscle cells


title: A3703_0335_AD2_AST_LiCl_R2

description: Library name: A3703_0335

value: M


title: A3703_0315_AD2_HEP_Vorinostat_R2

description: Library name: A3703_0315


title: A3703_0316_AD2_AST_Vorinostat_R1

description: Library name: A3703_0316


title: A3703_0314_840_AST_Tunicamycin_R1

description: Library name: A3703_0314


title: A3703_0317_AD3_NOC_Tunicamycin_R1

description: Library name: A3703_0317


title: A3703_0309_AD2_POD_DMSO_R2

description: Library name: A3703_0309

value: iPSC-derived podocytes

value: DMSO


title: A3703_0313_AD3_IPS_DMSO_R3

description: Library name: A3703_0313

value: undifferentiated iPSC


title: A3703_0308_AD3_POD_A366_R1

description: Library name: A3703_0308


title: A3703_0310_840_HEP_Tunicamycin_R2

description: Library name: A3703_0310


title: A3703_0312_AD3_DOP_A366_R2

description: Library name: A3703_0312


title: A3703_0307_AD3_POD_A971432_R1

description: Library name: A3703_0307


title: A3703_0311_AD3_AST_A971432_R3

description: Library name: A3703_0311


title: A3703_0303_AD3_DOP_DMSO_R1

description: Library name: A3703_0303


title: A3703_0305_840_CAM_Bardoxolone_R1

description: Library name: A3703_0305

value: Bardoxolone methyl


title: A3703_0302_840_NPC_DMSO_R2

description: Library name: A3703_0302

value: iPSC-derived neural progenitors


title: A3703_0306_AD3_END_17AAG_R2

description: Library name: A3703_0306

value: iPSC-derived endothelial cells


title: A3703_0304_MCF_MCF_Compound81_R2

description: Library name: A3703_0304

value: Compound 81


title: A3703_0300_AD2_SMC_Taxol_R2

description: Library name: A3703_0300

value: Taxol


title: A3703_0301_840_PTL_Rosiglitazone_R3

description: Library name: A3703_0301

value: iPSC-derived renal proximal tubular-like cells

value: Rosiglitazone


title: A3703_0298_AD3_NPC_DMSO_R3

description: Library name: A3703_0298


title: A3703_0297_AD3_NPC_Compound81_R1

description: Library name: A3703_0297


title: A3703_0299_AD2_CAM_LiCl_R1

description: Library name: A3703_0299

value: iPSC-derived cardiomyocytes

value: Lithium chloride


title: A3703_0296_AD3_END_Rosiglitazone_R2

description: Library name: A3703_0296


title: A3703_0295_AD2_MAC_Bardoxolone_R3

description: Library name: A3703_0295

value: iPSC-derived macrophages


title: A3703_0293_840_NOC_17AAG_R2

description: Library name: A3703_0293

value: iPSC-derived nociceptors


title: A3703_0292_AD2_NOC_Bardoxolone_R1

description: Library name: A3703_0292


title: A3703_0291_AD3_HEP_ThiametG_R1

description: Library name: A3703_0291

value: iPSC-derived hepatocytes

value: F

value: Thiamet-G


title: A3703_0290_AD3_DOP_Rapamycin_R3

description: Library name: A3703_0290

value: iPSC-derived dopaminergic neurons

value: Rapamycin


title: A3703_0289_840_HEP_DMSO_R2

description: Library name: A3703_0289

value: DMSO


title: A3703_0283_AD2_CAM_DMSO_R3

description: Library name: A3703_0283

value: M


title: A3703_0284_840_POD_Compound81_R2

description: Library name: A3703_0284

value: iPSC-derived podocytes


title: A3703_0288_AD2_NPC_Bardoxolone_R1

description: Library name: A3703_0288

value: iPSC-derived neural progenitors

value: Bardoxolone methyl


title: A3703_0285_AD2_DOP_Rapamycin_R2

description: Library name: A3703_0285


title: A3703_0281_AD3_MAC_A971432_R3

description: Library name: A3703_0281


title: A3703_0280_AD2_CAM_Rosiglitazone_R1

description: Library name: A3703_0280


title: A3703_0277_AD3_NOC_Bardoxolone_R3

description: Library name: A3703_0277


title: A3703_0282_840_CAM_LiCl_R1

description: Library name: A3703_0282


title: A3703_0278_840_IPS_Taxol_R1

description: Library name: A3703_0278

value: undifferentiated iPSC

value: Taxol


title: A3703_0275_AD3_HEP_A971432_R2

description: Library name: A3703_0275


title: A3703_0274_AD3_HEP_Rapamycin_R2

description: Library name: A3703_0274


title: A3703_0273_AD2_AST_ThiametG_R2

description: Library name: A3703_0273

value: iPSC-derived astrocytes


title: A3703_0272_MCF_MCF_A366_R2

description: Library name: A3703_0272


title: A3703_0270_840_DOP_Compound81_R1

description: Library name: A3703_0270

value: Compound 81


title: A3703_0269_840_POD_ThiametG_R1

description: Library name: A3703_0269


title: A3703_0294_AD3_PTL_LiCl_R3

description: Library name: A3703_0294

value: iPSC-derived renal proximal tubular-like cells

value: Lithium chloride


title: A3703_0267_AD2_PTL_Rosiglitazone_R2

description: Library name: A3703_0267

value: Rosiglitazone


title: A3703_0264_AD2_HEP_Tunicamycin_R1

description: Library name: A3703_0264

value: iPSC-derived hepatocytes

value: Tunicamycin


title: A3703_0279_AD2_DOP_Taxol_R3

description: Library name: A3703_0279


title: A3703_0265_AD3_CXN_Compound81_R1

description: Library name: A3703_0265

value: iPSC-derived cortical neurons

value: F


title: A3703_0287_AD2_MAC_Tunicamycin_R1

description: Library name: A3703_0287

value: iPSC-derived macrophages


title: A3703_0286_840_END_Taxol_R2

description: Library name: A3703_0286

value: iPSC-derived endothelial cells


title: A3703_0268_AD3_PTL_Bardoxolone_R3

description: Library name: A3703_0268


title: A3703_0266_AD2_CAM_ThiametG_R1

description: Library name: A3703_0266

value: iPSC-derived cardiomyocytes

value: M

value: Thiamet-G


title: A3703_0262_AD3_MAC_LiCl_R3

description: Library name: A3703_0262


title: A3703_0260_AD2_NOC_Rosiglitazone_R1

description: Library name: A3703_0260

value: iPSC-derived nociceptors


title: A3703_0259_840_IPS_Compound81_R1

description: Library name: A3703_0259

value: undifferentiated iPSC


title: A3703_0258_AD2_POD_Taxol_R1

description: Library name: A3703_0258

value: iPSC-derived podocytes

value: Taxol


title: A3703_0256_840_SMC_LiCl_R2

description: Library name: A3703_0256

value: iPSC-derived smooth muscle cells


title: A3703_0257_AD3_NPC_DMSO_R3

description: Library name: A3703_0257

value: iPSC-derived neural progenitors

value: DMSO


title: A3703_0255_AD3_POD_17AAG_R3

description: Library name: A3703_0255


title: A3703_0254_AD2_PTL_A971432_R2

description: Library name: A3703_0254

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0253_AD2_AST_ThiametG_R1

description: Library name: A3703_0253

value: iPSC-derived astrocytes


title: A3703_0252_AD2_POD_Rapamycin_R1

description: Library name: A3703_0252

value: Rapamycin


title: A3703_0271_840_NOC_DMSO_R1

description: Library name: A3703_0271


title: A3703_0248_840_IPS_Vorinostat_R3

description: Library name: A3703_0248

value: Vorinostat


title: A3703_0249_840_HEP_DMSO_R2

description: Library name: A3703_0249

value: iPSC-derived hepatocytes

value: F


title: A3703_0247_AD2_HEP_Taxol_R1

description: Library name: A3703_0247


title: A3703_0251_AD2_CXN_ThiametG_R2

description: Library name: A3703_0251

value: iPSC-derived cortical neurons


title: A3703_0246_840_NPC_ThiametG_R2

description: Library name: A3703_0246


title: A3703_0250_AD2_POD_Rosiglitazone_R3

description: Library name: A3703_0250

value: Rosiglitazone


title: A3703_0245_AD2_NOC_ThiametG_R1

description: Library name: A3703_0245

value: M


title: A3703_0244_840_SMC_Rapamycin_R2

description: Library name: A3703_0244


title: A3703_0243_AD3_POD_Taxol_R3

description: Library name: A3703_0243


title: A3703_0263_AD3_AST_Bardoxolone_R2

description: Library name: A3703_0263

value: Bardoxolone methyl


title: A3703_0276_AD3_NOC_LiCl_R1

description: Library name: A3703_0276

value: iPSC-derived nociceptors

value: Lithium chloride


title: A3703_0242_AD3_IPS_DMSO_R2

description: Library name: A3703_0242

value: undifferentiated iPSC


title: A3703_0261_AD3_PTL_Tunicamycin_R2

description: Library name: A3703_0261

value: Tunicamycin


title: A3703_0239_AD2_CXN_Taxol_R1

description: Library name: A3703_0239

value: Taxol


title: A3703_0238_AD2_DOP_Taxol_R1

description: Library name: A3703_0238

value: iPSC-derived dopaminergic neurons


title: A3703_0237_840_IPS_LiCl_R1

description: Library name: A3703_0237


title: A3703_0236_AD3_SMC_Compound81_R2

description: Library name: A3703_0236

value: iPSC-derived smooth muscle cells

value: Compound 81


title: A3703_0235_AD3_END_DMSO_R2

description: Library name: A3703_0235

value: iPSC-derived endothelial cells

value: DMSO


title: A3703_0234_AD2_MAC_Tunicamycin_R2

description: Library name: A3703_0234

value: iPSC-derived macrophages


title: A3703_0230_AD2_PTL_Vorinostat_R1

description: Library name: A3703_0230

value: iPSC-derived renal proximal tubular-like cells

value: Vorinostat


title: A3703_0233_AD3_DOP_Tunicamycin_R3

description: Library name: A3703_0233

value: F


title: A3703_0228_AD2_CAM_Bardoxolone_R1

description: Library name: A3703_0228

value: iPSC-derived cardiomyocytes


title: A3703_0227_840_CAM_A971432_R1

description: Library name: A3703_0227


title: A3703_0226_840_HEP_Vorinostat_R1

description: Library name: A3703_0226

value: iPSC-derived hepatocytes


title: A3703_0241_AD2_NPC_DMSO_R1

description: Library name: A3703_0241

value: iPSC-derived neural progenitors

value: M


title: A3703_0225_840_AST_ThiametG_R3

description: Library name: A3703_0225

value: iPSC-derived astrocytes

value: Thiamet-G


title: A3703_0240_AD3_CXN_Vorinostat_R1

description: Library name: A3703_0240

value: iPSC-derived cortical neurons


title: A3703_0223_840_NPC_ThiametG_R3

description: Library name: A3703_0223


title: A3703_0219_840_IPS_DMSO_R3

description: Library name: A3703_0219

value: undifferentiated iPSC


title: A3703_0218_840_NOC_Rosiglitazone_R1

description: Library name: A3703_0218

value: iPSC-derived nociceptors

value: Rosiglitazone


title: A3703_0217_AD2_CXN_Vorinostat_R1

description: Library name: A3703_0217


title: A3703_0222_840_SMC_ThiametG_R2

description: Library name: A3703_0222

value: iPSC-derived smooth muscle cells


title: A3703_0216_AD3_CAM_A366_R2

description: Library name: A3703_0216


title: A3703_0214_AD2_AST_DMSO_R2

description: Library name: A3703_0214


title: A3703_0213_AD3_SMC_ThiametG_R2

description: Library name: A3703_0213


title: A3703_0215_AD2_NPC_Tunicamycin_R1

description: Library name: A3703_0215

value: Tunicamycin


title: A3703_0212_AD2_IPS_Taxol_R3

description: Library name: A3703_0212

value: Taxol


title: A3703_0211_MCF_MCF_Rapamycin_R2

description: Library name: A3703_0211

value: Rapamycin


title: A3703_0210_MCF_MCF_Vorinostat_R1

description: Library name: A3703_0210


title: A3703_0232_AD3_DOP_ThiametG_R1

description: Library name: A3703_0232

value: iPSC-derived dopaminergic neurons


title: A3703_0231_AD3_NPC_DMSO_R1

description: Library name: A3703_0231

value: DMSO


title: A3703_0206_840_END_LiCl_R3

description: Library name: A3703_0206

value: iPSC-derived endothelial cells

value: F

value: Lithium chloride


title: A3703_0229_840_END_DMSO_R3

description: Library name: A3703_0229


title: A3703_0224_AD3_MAC_17AAG_R1

description: Library name: A3703_0224

value: iPSC-derived macrophages


title: A3703_0204_840_IPS_A366_R2

description: Library name: A3703_0204


title: A3703_0205_AD2_CXN_DMSO_R3

description: Library name: A3703_0205

value: M


title: A3703_0221_840_MAC_A366_R1

description: Library name: A3703_0221


title: A3703_0203_AD3_SMC_Taxol_R2

description: Library name: A3703_0203


title: A3703_0201_840_SMC_Rosiglitazone_R1

description: Library name: A3703_0201


title: A3703_0220_AD3_END_Vorinostat_R2

description: Library name: A3703_0220

value: Vorinostat


title: A3703_0200_840_END_Taxol_R3

description: Library name: A3703_0200


title: A3703_0199_AD3_IPS_Rosiglitazone_R3

description: Library name: A3703_0199


title: A3703_0196_840_AST_A971432_R1

description: Library name: A3703_0196

value: iPSC-derived astrocytes


title: A3703_0194_AD3_DOP_Rapamycin_R2

description: Library name: A3703_0194


title: A3703_0198_AD2_PTL_DMSO_R3

description: Library name: A3703_0198

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0202_AD2_HEP_DMSO_R1

description: Library name: A3703_0202

value: iPSC-derived hepatocytes


title: A3703_0209_840_END_Vorinostat_R3

description: Library name: A3703_0209


title: A3703_0191_AD3_END_Rapamycin_R1

description: Library name: A3703_0191


title: A3703_0189_AD3_MAC_A971432_R1

description: Library name: A3703_0189


title: A3703_0207_AD2_NOC_Rapamycin_R3

description: Library name: A3703_0207

value: iPSC-derived nociceptors


title: A3703_0188_840_SMC_DMSO_R2

description: Library name: A3703_0188


title: A3703_0187_AD2_POD_Tunicamycin_R1

description: Library name: A3703_0187

value: iPSC-derived podocytes


title: A3703_0186_AD3_AST_A366_R1

description: Library name: A3703_0186


title: A3703_0208_840_POD_ThiametG_R2

description: Library name: A3703_0208

value: Thiamet-G


title: A3703_0185_AD3_PTL_LiCl_R1

description: Library name: A3703_0185


title: A3703_0184_AD3_END_ThiametG_R1

description: Library name: A3703_0184


title: A3703_0183_840_AST_DMSO_R1

description: Library name: A3703_0183


title: A3703_0182_840_CAM_17AAG_R2

description: Library name: A3703_0182

value: iPSC-derived cardiomyocytes


title: A3703_0179_AD3_CAM_ThiametG_R3

description: Library name: A3703_0179


title: A3703_0181_840_POD_LiCl_R3

description: Library name: A3703_0181


title: A3703_0197_840_MAC_Vorinostat_R3

description: Library name: A3703_0197


title: A3703_0178_AD2_AST_Vorinostat_R2

description: Library name: A3703_0178


title: A3703_0195_840_AST_Bardoxolone_R3

description: Library name: A3703_0195

value: Bardoxolone methyl


title: A3703_0193_840_CXN_A366_R1

description: Library name: A3703_0193

value: iPSC-derived cortical neurons


title: A3703_0192_840_NOC_Tunicamycin_R1

description: Library name: A3703_0192

value: Tunicamycin


title: A3703_0175_AD3_CXN_Tunicamycin_R3

description: Library name: A3703_0175


title: A3703_0174_AD3_POD_Compound81_R1

description: Library name: A3703_0174

value: Compound 81


title: A3703_0172_AD2_POD_Compound81_R3

description: Library name: A3703_0172


title: A3703_0170_MCF_MCF_DMSO_R1

description: Library name: A3703_0170

value: DMSO


title: A3703_0173_840_NPC_Rapamycin_R3

description: Library name: A3703_0173

value: iPSC-derived neural progenitors

value: F

value: Rapamycin


title: A3703_0171_AD2_HEP_LiCl_R3

description: Library name: A3703_0171

value: M

value: Lithium chloride


title: A3703_0169_840_SMC_LiCl_R1

description: Library name: A3703_0169

value: iPSC-derived smooth muscle cells


title: A3703_0168_840_POD_Rapamycin_R2

description: Library name: A3703_0168


title: A3703_0190_840_SMC_Compound81_R2

description: Library name: A3703_0190


title: A3703_0165_AD3_CAM_A366_R3

description: Library name: A3703_0165


title: A3703_0166_840_END_ThiametG_R2

description: Library name: A3703_0166

value: iPSC-derived endothelial cells


title: A3703_0164_AD2_DOP_Bardoxolone_R2

description: Library name: A3703_0164

value: iPSC-derived dopaminergic neurons


title: A3703_0163_AD2_NOC_LiCl_R3

description: Library name: A3703_0163

value: iPSC-derived nociceptors


title: A3703_0161_AD2_DOP_Vorinostat_R1

description: Library name: A3703_0161

value: Vorinostat


title: A3703_0162_840_NOC_17AAG_R3

description: Library name: A3703_0162


title: A3703_0160_AD3_PTL_DMSO_R1

description: Library name: A3703_0160

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0159_840_HEP_17AAG_R1

description: Library name: A3703_0159

value: iPSC-derived hepatocytes


title: A3703_0180_AD2_NOC_Tunicamycin_R3

description: Library name: A3703_0180


title: A3703_0158_AD3_CAM_DMSO_R2

description: Library name: A3703_0158

value: iPSC-derived cardiomyocytes


title: A3703_0157_AD2_MAC_ThiametG_R3

description: Library name: A3703_0157

value: iPSC-derived macrophages

value: Thiamet-G


title: A3703_0177_840_NPC_Taxol_R1

description: Library name: A3703_0177

value: Taxol


title: A3703_0176_840_DOP_ThiametG_R2

description: Library name: A3703_0176


title: A3703_0155_AD2_NOC_Rapamycin_R1

description: Library name: A3703_0155


title: A3703_0156_840_HEP_LiCl_R3

description: Library name: A3703_0156


title: A3703_0154_840_CAM_Tunicamycin_R2

description: Library name: A3703_0154

value: Tunicamycin


title: A3703_0153_840_CXN_DMSO_R3

description: Library name: A3703_0153

value: iPSC-derived cortical neurons

value: DMSO


title: A3703_0152_AD2_END_ThiametG_R2

description: Library name: A3703_0152


title: A3703_0151_AD3_SMC_17AAG_R2

description: Library name: A3703_0151

value: F


title: A3703_0150_AD2_HEP_Rosiglitazone_R3

description: Library name: A3703_0150

value: M

value: Rosiglitazone


title: A3703_0149_AD3_END_Compound81_R1

description: Library name: A3703_0149

value: Compound 81


title: A3703_0148_840_PTL_DMSO_R1

description: Library name: A3703_0148


title: A3703_0167_840_MAC_Rosiglitazone_R1

description: Library name: A3703_0167


title: A3703_0147_840_NPC_DMSO_R1

description: Library name: A3703_0147

value: iPSC-derived neural progenitors


title: A3703_0146_AD2_CAM_A366_R2

description: Library name: A3703_0146


title: A3703_0145_840_SMC_ThiametG_R1

description: Library name: A3703_0145

value: iPSC-derived smooth muscle cells


title: A3703_0144_AD2_IPS_ThiametG_R3

description: Library name: A3703_0144

value: undifferentiated iPSC


title: A3703_0143_AD2_MAC_Rosiglitazone_R3

description: Library name: A3703_0143


title: A3703_0141_840_MAC_Rosiglitazone_R2

description: Library name: A3703_0141


title: A3703_0142_AD2_CXN_17AAG_R1

description: Library name: A3703_0142


title: A3703_0138_AD2_SMC_Bardoxolone_R2

description: Library name: A3703_0138

value: Bardoxolone methyl


title: A3703_0140_AD2_END_Tunicamycin_R3

description: Library name: A3703_0140

value: iPSC-derived endothelial cells


title: A3703_0139_840_IPS_ThiametG_R1

description: Library name: A3703_0139


title: A3703_0137_AD2_AST_Compound81_R3

description: Library name: A3703_0137

value: iPSC-derived astrocytes


title: A3703_0136_AD2_NOC_A971432_R2

description: Library name: A3703_0136

value: iPSC-derived nociceptors


title: A3703_0135_AD3_CXN_ThiametG_R3

description: Library name: A3703_0135


title: A3703_0133_AD3_HEP_Rapamycin_R1

description: Library name: A3703_0133

value: iPSC-derived hepatocytes

value: Rapamycin


title: A3703_0134_AD2_HEP_Rosiglitazone_R1

description: Library name: A3703_0134


title: A3703_0132_840_NOC_A366_R2

description: Library name: A3703_0132


title: A3703_0129_AD3_IPS_Rosiglitazone_R1

description: Library name: A3703_0129


title: A3703_0128_840_END_Taxol_R1

description: Library name: A3703_0128

value: Taxol


title: A3703_0127_AD2_IPS_LiCl_R3

description: Library name: A3703_0127

value: Lithium chloride


title: A3703_0130_AD3_DOP_ThiametG_R3

description: Library name: A3703_0130

value: iPSC-derived dopaminergic neurons

value: Thiamet-G


title: A3703_0126_840_CAM_ThiametG_R1

description: Library name: A3703_0126

value: iPSC-derived cardiomyocytes

value: F


title: A3703_0125_AD2_POD_Compound81_R1

description: Library name: A3703_0125

value: iPSC-derived podocytes

value: M


title: A3703_0124_AD3_CAM_DMSO_R1

description: Library name: A3703_0124

value: DMSO


title: A3703_0123_840_CXN_Tunicamycin_R1

description: Library name: A3703_0123

value: iPSC-derived cortical neurons

value: Tunicamycin


title: A3703_0120_AD2_PTL_DMSO_R2

description: Library name: A3703_0120

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0121_840_CXN_ThiametG_R3

description: Library name: A3703_0121


title: A3703_0122_AD2_NPC_LiCl_R3

description: Library name: A3703_0122

value: iPSC-derived neural progenitors


title: A3703_0118_840_NPC_DMSO_R2

description: Library name: A3703_0118


title: A3703_0119_AD2_IPS_A366_R1

description: Library name: A3703_0119

value: undifferentiated iPSC


title: A3703_0116_AD2_CAM_Rapamycin_R1

description: Library name: A3703_0116


title: A3703_0115_AD3_DOP_Rosiglitazone_R3

description: Library name: A3703_0115

value: Rosiglitazone


title: A3703_0114_AD2_CXN_A971432_R3

description: Library name: A3703_0114


title: A3703_0117_840_MAC_17AAG_R1

description: Library name: A3703_0117

value: iPSC-derived macrophages


title: A3703_0113_AD2_IPS_A366_R3

description: Library name: A3703_0113


title: A3703_0112_AD3_IPS_Bardoxolone_R3

description: Library name: A3703_0112

value: Bardoxolone methyl


title: A3703_0109_AD3_DOP_DMSO_R3

description: Library name: A3703_0109


title: A3703_0110_840_MAC_Compound81_R1

description: Library name: A3703_0110

value: Compound 81


title: A3703_0131_840_IPS_LiCl_R3

description: Library name: A3703_0131

value: Lithium chloride


title: A3703_0111_AD3_AST_DMSO_R1

description: Library name: A3703_0111

value: iPSC-derived astrocytes


title: A3703_0108_AD2_NPC_Rapamycin_R3

description: Library name: A3703_0108

value: Rapamycin


title: A3703_0105_AD2_AST_Rapamycin_R2

description: Library name: A3703_0105


title: A3703_0106_AD2_PTL_DMSO_R3

description: Library name: A3703_0106


title: A3703_0104_AD2_PTL_Taxol_R3

description: Library name: A3703_0104

value: Taxol


title: A3703_0103_MCF_MCF_17AAG_R3

description: Library name: A3703_0103

value: F


title: A3703_0107_AD3_PTL_Rosiglitazone_R3

description: Library name: A3703_0107


title: A3703_0102_840_SMC_Bardoxolone_R2

description: Library name: A3703_0102

value: iPSC-derived smooth muscle cells


title: A3703_0101_840_HEP_ThiametG_R2

description: Library name: A3703_0101

value: iPSC-derived hepatocytes

value: Thiamet-G


title: A3703_0100_AD3_NPC_A366_R3

description: Library name: A3703_0100


title: A3703_0099_840_AST_A366_R1

description: Library name: A3703_0099


title: A3703_0095_AD2_POD_Compound81_R2

description: Library name: A3703_0095

value: iPSC-derived podocytes

value: M


title: A3703_0094_AD2_END_DMSO_R2

description: Library name: A3703_0094

value: iPSC-derived endothelial cells

value: DMSO


title: A3703_0098_840_POD_Vorinostat_R1

description: Library name: A3703_0098

value: Vorinostat


title: A3703_0097_AD3_DOP_LiCl_R3

description: Library name: A3703_0097

value: iPSC-derived dopaminergic neurons


title: A3703_0096_840_AST_Bardoxolone_R1

description: Library name: A3703_0096


title: A3703_0091_AD3_MAC_Compound81_R1

description: Library name: A3703_0091

value: iPSC-derived macrophages


title: A3703_0092_AD2_DOP_LiCl_R1

description: Library name: A3703_0092


title: A3703_0089_840_CXN_A366_R2

description: Library name: A3703_0089

value: iPSC-derived cortical neurons


title: A3703_0093_AD2_PTL_Rapamycin_R2

description: Library name: A3703_0093

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0088_AD3_END_Rosiglitazone_R3

description: Library name: A3703_0088

value: Rosiglitazone


title: A3703_0086_840_POD_DMSO_R1

description: Library name: A3703_0086


title: A3703_0090_AD3_PTL_Vorinostat_R1

description: Library name: A3703_0090


title: A3703_0087_840_PTL_A971432_R3

description: Library name: A3703_0087


title: A3703_0084_AD3_SMC_A971432_R3

description: Library name: A3703_0084


title: A3703_0083_AD3_CAM_DMSO_R3

description: Library name: A3703_0083

value: iPSC-derived cardiomyocytes


title: A3703_0085_840_SMC_17AAG_R1

description: Library name: A3703_0085


title: A3703_0080_AD2_DOP_Taxol_R2

description: Library name: A3703_0080


title: A3703_0076_AD3_CXN_ThiametG_R2

description: Library name: A3703_0076


title: A3703_0079_AD3_NOC_Compound81_R1

description: Library name: A3703_0079

value: iPSC-derived nociceptors

value: Compound 81


title: A3703_0082_840_POD_DMSO_R3

description: Library name: A3703_0082

value: F


title: A3703_0078_840_MAC_A366_R3

description: Library name: A3703_0078


title: A3703_0075_AD2_DOP_A971432_R1

description: Library name: A3703_0075


title: A3703_0081_AD2_POD_A971432_R2

description: Library name: A3703_0081


title: A3703_0077_MCF_MCF_LiCl_R3

description: Library name: A3703_0077

value: Lithium chloride


title: A3703_0072_AD3_IPS_A971432_R2

description: Library name: A3703_0072

value: undifferentiated iPSC


title: A3703_0074_AD3_POD_A971432_R2

description: Library name: A3703_0074


title: A3703_0071_840_HEP_A366_R3

description: Library name: A3703_0071

value: iPSC-derived hepatocytes


title: A3703_0073_840_POD_Bardoxolone_R2

description: Library name: A3703_0073

value: iPSC-derived podocytes

value: Bardoxolone methyl


title: A3703_0070_AD3_HEP_A366_R2

description: Library name: A3703_0070


title: A3703_0069_AD3_CXN_17AAG_R2

description: Library name: A3703_0069


title: A3703_0068_AD3_AST_LiCl_R1

description: Library name: A3703_0068

value: iPSC-derived astrocytes


title: A3703_0066_840_SMC_17AAG_R3

description: Library name: A3703_0066

value: iPSC-derived smooth muscle cells


title: A3703_0067_AD2_MAC_Bardoxolone_R2

description: Library name: A3703_0067

value: M


title: A3703_0061_AD3_CAM_Rapamycin_R3

description: Library name: A3703_0061

value: Rapamycin


title: A3703_0062_AD3_POD_Compound81_R2

description: Library name: A3703_0062


title: A3703_0065_840_NOC_Tunicamycin_R3

description: Library name: A3703_0065

value: Tunicamycin


title: A3703_0063_840_END_Vorinostat_R2

description: Library name: A3703_0063

value: iPSC-derived endothelial cells

value: Vorinostat


title: A3703_0064_AD2_IPS_Rapamycin_R1

description: Library name: A3703_0064


title: A3703_0059_840_CXN_Rosiglitazone_R3

description: Library name: A3703_0059

value: iPSC-derived cortical neurons

value: Rosiglitazone


title: A3703_0060_840_END_Rosiglitazone_R2

description: Library name: A3703_0060


title: A3703_0057_AD3_PTL_A366_R2

description: Library name: A3703_0057

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0058_840_AST_DMSO_R2

description: Library name: A3703_0058

value: DMSO


title: A3703_0054_840_HEP_17AAG_R3

description: Library name: A3703_0054

value: F


title: A3703_0053_AD3_CXN_A366_R2

description: Library name: A3703_0053


title: A3703_0051_AD2_CAM_Compound81_R3

description: Library name: A3703_0051

value: iPSC-derived cardiomyocytes

value: Compound 81


title: A3703_0055_840_NPC_A366_R2

description: Library name: A3703_0055

value: iPSC-derived neural progenitors


title: A3703_0049_840_DOP_Rosiglitazone_R2

description: Library name: A3703_0049

value: iPSC-derived dopaminergic neurons


title: A3703_0056_AD2_NPC_17AAG_R2

description: Library name: A3703_0056


title: A3703_0052_840_DOP_ThiametG_R1

description: Library name: A3703_0052

value: Thiamet-G


title: A3703_0045_AD3_CAM_LiCl_R2

description: Library name: A3703_0045

value: Lithium chloride


title: A3703_0050_AD3_PTL_17AAG_R2

description: Library name: A3703_0050


title: A3703_0042_AD3_DOP_Taxol_R2

description: Library name: A3703_0042

value: Taxol


title: A3703_0041_840_IPS_ThiametG_R2

description: Library name: A3703_0041

value: undifferentiated iPSC


title: A3703_0044_AD3_NOC_Rosiglitazone_R1

description: Library name: A3703_0044

value: iPSC-derived nociceptors


title: A3703_0046_AD3_HEP_DMSO_R3

description: Library name: A3703_0046

value: iPSC-derived hepatocytes


title: A3703_0047_AD3_MAC_Tunicamycin_R3

description: Library name: A3703_0047

value: iPSC-derived macrophages

value: Tunicamycin


title: A3703_0043_AD2_SMC_Bardoxolone_R3

description: Library name: A3703_0043

value: iPSC-derived smooth muscle cells

value: M

value: Bardoxolone methyl


title: A3703_0048_840_AST_LiCl_R3

description: Library name: A3703_0048

value: iPSC-derived astrocytes


title: A3703_0040_AD2_CAM_17AAG_R3

description: Library name: A3703_0040


title: A3703_0039_AD3_PTL_A971432_R3

description: Library name: A3703_0039

value: iPSC-derived renal proximal tubular-like cells

value: F


title: A3703_0038_AD2_NPC_Rapamycin_R2

description: Library name: A3703_0038

value: Rapamycin


title: A3703_0036_840_END_Rapamycin_R1

description: Library name: A3703_0036

value: iPSC-derived endothelial cells


title: A3703_0037_AD3_END_Taxol_R2

description: Library name: A3703_0037


title: A3703_0035_AD2_NOC_A366_R2

description: Library name: A3703_0035


title: A3703_0034_AD2_AST_DMSO_R1

description: Library name: A3703_0034

value: DMSO


title: A3703_0033_840_MAC_DMSO_R3

description: Library name: A3703_0033


title: A3703_0030_AD2_HEP_Tunicamycin_R2

description: Library name: A3703_0030


title: A3703_0032_AD3_IPS_Vorinostat_R1

description: Library name: A3703_0032

value: Vorinostat


title: A3703_0028_MCF_MCF_Rapamycin_R3

description: Library name: A3703_0028


title: A3703_0031_AD3_MAC_Rapamycin_R2

description: Library name: A3703_0031


title: A3703_0027_AD2_IPS_Taxol_R2

description: Library name: A3703_0027


title: A3703_0026_AD3_CAM_Rosiglitazone_R3

description: Library name: A3703_0026

value: iPSC-derived cardiomyocytes

value: Rosiglitazone


title: A3703_0024_AD3_PTL_DMSO_R2

description: Library name: A3703_0024


title: A3703_0022_840_NOC_Taxol_R3

description: Library name: A3703_0022

value: Taxol


title: A3703_0020_840_DOP_Tunicamycin_R2

description: Library name: A3703_0020

value: iPSC-derived dopaminergic neurons


title: A3703_0029_AD2_SMC_A971432_R3

description: Library name: A3703_0029


title: A3703_0017_840_HEP_Tunicamycin_R3

description: Library name: A3703_0017

value: iPSC-derived hepatocytes


title: A3703_0018_840_AST_A366_R3

description: Library name: A3703_0018


title: A3703_0019_840_NPC_LiCl_R1

description: Library name: A3703_0019

value: iPSC-derived neural progenitors

value: Lithium chloride


title: A3703_0015_AD3_HEP_ThiametG_R2

description: Library name: A3703_0015

value: Thiamet-G


title: A3703_0013_AD2_NPC_Tunicamycin_R3

description: Library name: A3703_0013

value: M

value: Tunicamycin


title: A3703_0021_AD2_MAC_Compound81_R1

description: Library name: A3703_0021

value: iPSC-derived macrophages

value: Compound 81


title: A3703_0014_AD3_AST_Bardoxolone_R3

description: Library name: A3703_0014

value: iPSC-derived astrocytes

value: F

value: Bardoxolone methyl


title: A3703_0016_AD3_END_A366_R3

description: Library name: A3703_0016

value: iPSC-derived endothelial cells


title: A3703_0012_AD3_NPC_LiCl_R3

description: Library name: A3703_0012


title: A3703_0011_AD3_NOC_Rosiglitazone_R3

description: Library name: A3703_0011

value: iPSC-derived nociceptors


title: A3703_0010_AD2_PTL_LiCl_R2

description: Library name: A3703_0010

value: iPSC-derived renal proximal tubular-like cells


title: A3703_0009_840_NPC_Compound81_R3

description: Library name: A3703_0009


title: A3703_0007_AD2_CXN_Bardoxolone_R2

description: Library name: A3703_0007

value: iPSC-derived cortical neurons


title: A3703_0008_AD3_CXN_LiCl_R2

description: Library name: A3703_0008


title: A3703_0006_AD3_PTL_Compound81_R3

description: Library name: A3703_0006


title: A3703_0004_AD2_SMC_A366_R1

description: Library name: A3703_0004

value: iPSC-derived smooth muscle cells


title: A3703_0002_840_CAM_Vorinostat_R2

description: Library name: A3703_0002

value: iPSC-derived cardiomyocytes

value: Vorinostat


title: A3703_0025_AD3_SMC_DMSO_R1

description: Library name: A3703_0025

value: DMSO


title: A3703_0005_840_CAM_LiCl_R3

description: Library name: A3703_0005

value: Lithium chloride


title: A3703_0023_AD2_NPC_A971432_R2

description: Library name: A3703_0023

value: iPSC-derived neural progenitors


title: A3703_0001_AD2_IPS_Bardoxolone_R1

description: Library name: A3703_0001

value: undifferentiated iPSC

value: M


title: Expr 17 (ACS+)

city: Chicago

first: Eric

middle: C

last: Beyer

state: IL

address: 900 E 57th St

department: Pediatrics

country: USA

institute: University of Chicago

description: Library name: Sample 29

data_processing:
The data were analyzed by the Center for Research Informatics of the University of Chicago The quality of raw sequencing data was assessed using FastQC [36]. The sequences of Illumina adapters/primers were detected from sequencing reads. All RNA reads were ini-tially mapped to the human (hg38) reference genome using STAR release with default parameters [37]. Picard was used to collect mapping metrics [38]. The files resulting from the alignment step were taken individually as input to evalu-ate transcriptional expression using subread::featureCounts [39]. The differential expres-sion analysis tool DESeq2 was employed to discover differentially expressed genes between pairwise groups based on expression estimation of individual genes [40]. Differentially expressed miRNAs were discovered through a gene-wise statistical test based on quanti-fied miRNA genes. The criteria used included of fold change ≥ 1.5 and False discovery rate (FDR) < 0.1 [41].
Assembly: human (hg38) reference genome using STAR release with default parameters
Supplementary files format and content: .XLSX file with info regarding different micro RNAS

source_name: plasma

extract_protocol:
EVs were isolated from platelet-free plasma using the Total Exosome Isolation kit (Thermo Fisher Scientific Inc., Waltham, MA). For each isolation, 400 µL of plasma was used. Pellets containing EVs were resuspended in Qiazol. RNA (including small RNAs) was purified with the miRNeasy Micro Kit (Qiagen, Germantown, MD) resulting in 14 µL of RNA in H20. The concentration of RNA was assessed using an Agilent 2100 Bioanalyz-er (Agilent Technologies, Inc., Santa Clara, CA); the average concentration was 250 pg/µL.
Libraries were prepared using the Illumina small RNA library preparation kit

tag: tissue

value: plasma

value: Extracellular Vesicle

value: History of ACS


title: Expr 16 (ACS+)

description: Library name: Sample 28


title: Expr 15 (ACS+)

description: Library name: Sample 27


title: Expr 14 (ACS+)

description: Library name: Sample 26


title: Expr 13 (ACS+)

description: Library name: Sample 25


title: Expr 12 (ACS+)

description: Library name: Sample 24


title: Expr 10 (ACS+)

description: Library name: Sample 22


title: Expr 11 (ACS+)

description: Library name: Sample 23


title: Expr 7 (ACS+)

description: Library name: Sample 19


title: Expr 8 (ACS+)

description: Library name: Sample 20


title: A3703_0003_AD2_NOC_A366_R3

description: Library name: A3703_0003


title: Expr 9 (ACS+)

description: Library name: Sample 21


title: Expr 6 (ACS+)

description: Library name: Sample 18


title: Expr 5 (ACS+)

description: Library name: Sample 17


title: Expr 4 (ACS+)

description: Library name: Sample 16


title: Expr 3 (ACS+)

description: Library name: Sample 15


title: ICC19

city: Boston

first: Vindhya

last: Vijay

state: MA

address: 185 Cambridge Street

institute: MGH Cancer Center/ Harvard Medical School

description: Library name: ICC19

data_processing:
The raw sequence data (.bcl files) generated by the sequencer were converted into FASTQ files and de-multiplexed using Illumina's bcl2fastq 2.17 software, allowing for one mismatch in index sequence identification.
Assembly: Hg38
Supplementary files format and content: csv file includes raw counts for all samples

source_name: Cell Line

extract_protocol:
Total RNA was extracted using the RNeasy Plus Kit (Qiagen).
RNA samples were quantified using the Qubit 2.0 Fluorometer (Life Technologies, Carlsbad, CA, USA), and RNA integrity was assessed with the Agilent TapeStation 4200 (Agilent Technologies, Palo Alto, CA, USA). RNA sequencing libraries were prepared using the NEBNext Ultra II RNA Library Prep Kit for Illumina (New England Biolabs, Ipswich, MA, USA), following the manufacturer’s instructions. Briefly, mRNA enrichment was performed using Oligo(dT) beads, followed by fragmentation for 15 minutes at 94°C. First- and second-strand cDNA synthesis was then carried out. The resulting cDNA fragments were end-repaired, adenylated at the 3’ ends, and ligated with universal adapters. This was followed by index addition and library enrichment through limited-cycle PCR.The sequencing libraries were validated using the Agilent TapeStation (Agilent Technologies, Palo Alto, CA, USA) and quantified using the Qubit 2.0 Fluorometer (ThermoFisher Scientific, Waltham, MA, USA), as well as quantitative PCR (KAPA Biosystems, Wilmington, MA, USA). Libraries were clustered onto flowcell lanes, and after clustering, the flowcell was loaded onto an Illumina instrument, following the manufacturer’s protocol. Sequencing was performed in a 2 × 150 bp Paired-End (PE) configuration.

value: Cell Line

value: Intrahepatic cholangiocarcinoma


title: GB3

description: Library name: GB3

value: Gallbladder carcinoma


title: ICC14

description: Library name: ICC14


title: ICC24

description: Library name: ICC24


title: ICC17

description: Library name: ICC17


title: ICC25

description: Library name: ICC25


title: ICC21

description: Library name: ICC21


title: ICC26

description: Library name: ICC26


title: ICC11

description: Library name: ICC11


title: ICC18

description: Library name: ICC18


title: ICC20

description: Library name: ICC20


title: ICC16

description: Library name: ICC16


title: Expr 2 (ACS+)

description: Library name: Sample 14


title: Expr 1 (ACS+)

description: Library name: Sample 13


title: Expr 12 (ACS-)

description: Library name: Sample 12

value: No history of ACS


title: Expr 11 (ACS-)

description: Library name: Sample 11


title: Expr 10 (ACS-)

description: Library name: Sample 10


title: Expr 7 (ACS-)

description: Library name: Sample 7


title: Expr 8 (ACS-)

description: Library name: Sample 8


title: Expr 6 (ACS-)

description: Library name: Sample 6


title: Expr 5 (ACS-)

description: Library name: Sample 5


title: Expr 3 (ACS-)

description: Library name: Sample 3


title: Expr 2 (ACS-)

description: Library name: Sample 2


title: Expr 1 (ACS-)

description: Library name: Sample 1


title: Expr 4 (ACS-)

description: Library name: Sample 4


title: MM1S RIP IgG

city: Shanghai

first: Hua

last: Yan

address: 197 Ruijin 2nd Road

country: China

institute: Ruijin Hospital

description: Library name: Sample 17

data_processing:
CLC Genomics Workbench v 11.0.1
Sequence reads were trimmed for adaptor sequence/low quality sequence using CLC genomic benchwork (parameter-Quality limit:0.05)
Trimmed sequence reads were mapped to GrCM38/mm10 using CLC genomic benchwork (parameters-mismatch cost: 2 insertion cost: 3 deletion cost: 3 length fraction)
Read count extraction and normalization were performed using CLC genomic benchwork
Assembly: mm10
Supplementary files format and content: tab-delimited text files include FPKM values for each samples

extract_protocol:
RNA was harvested using TRIzol regent. Total RNA was used for construction of sequencing libraries.
RNA libraries for RNA-seq were performed using SMARTER mRNA-Seq Library Prep Kit following manufacture's protocols.

value: plasma cell


title: MM1S RIP RBM39

description: Library name: Sample 18


title: H460_shNRF2_6hr_r1_rep2

city: South San Francisco

first: Scott

last: Foster

address: Genentech

institute: Genentech

library_source: other

data_processing:
Initial data processing preformed by Arpeggio Biosciences. Reads were aligned to GrCH38 by bowtie2 using end-to-end alignment and --very-sensitive processing
Full protocol described in detail in Mahat et al. 2016. PMID:  27442863, DOI: 10.1038/nprot.2016.086
Assembly: GrCH38/hg38
Supplementary files format and content: Two bigwig files per file representing the plus and minus strand
Library strategy: Pro-seq

molecule: other

extract_protocol:
Cell nuclei were isolated and provided to Arpeggio Biosciences
Library construction was performed by Arpeggio Biosciences as describe in Mahat et al. 2016. PMID:  27442863, DOI: 10.1038/nprot.2016.086

value: Non-Small Cell Lung Cancer

value: 6h, 250ng/mL dox


title: H460_shNRF2_3hr_r1_rep2

value: 3h, 250ng/mL dox


title: H460_shNRF2_3hr_r1_rep1


title: H460_shNRF2_6hr_r1_rep1


title: A549_shNRF2_6hr_r1_rep1


title: H460_shNRF2_0hr_r1_rep1

value: no dox


title: H460_shNRF2_0hr_r1_rep2


title: A549_shNRF2_0hr_r1_rep2


title: A549_shNRF2_3hr_r1_rep1


title: CD10+/CD19+ B Cell Control 001

city: Montreal

first: Sinnett

last: Daniel

address: 3175 Chem. de la Cote-Sainte-Catherine

country: Canada

institute: CHU Ste-Justine Research Center

data_processing:
Raw reads were used
Sequence reads were mapped to the transciptome using Salmon 1,9,0 with the following parameters : -l ISR – minScoreFraction 0.55 –seqBias –gcBias –dumpEq
The transcriptome reference used for alignment is a non-redundant merge of : Gencode V29, LNCipedia 5.2 and circRNAs discovered in all samples using both CIRI2 and circexplorer2
Raw read counts and TPM values at the gene level are exported from the salmon quant files using the tximport R package
Assembly: GRCh38
Supplementary files format and content: tab-delimited text file includes gene level raw counts for all samples
Supplementary files format and content: tab-delimited text file includes gene level TPM values for all samples

source_name: blood cord

extract_protocol:
RNA was harvested using Mini AllPrep DNA/RNA kits (Qiagen)
RNA libraries for RNA-seq were prepared using the Ribo-Zero Gold Kit (Illumina) according to the manufacturer's protocol

value: blood cord

tag: genotype


title: CD10+/CD19+ B Cell Control 003


title: Expr 9 (ACS-)

description: Library name: Sample 9


title: Tumor - TCF3-PBX1+ patient 012

source_name: tumor (bone marrow biopsy)

value: F

tag: age at_diagnosis

value: tumor (bone marrow biopsy)


title: CD10+/CD19+ B Cell Control 002


title: A549_shNRF2_0hr_r1_rep1


title: Tumor - TCF3-PBX1+ patient 011


title: Tumor - TCF3-PBX1+ patient 006


title: Tumor - TCF3-PBX1+ patient 005


title: Tumor - TCF3-PBX1+ patient 007


title: Tumor - TCF3-PBX1+ patient 004


title: Tumor - TCF3-PBX1+ patient 003


title: Tumor - TCF3-PBX1+ patient 002


title: Tumor - TCF3-PBX1+ patient 001


title: A549_shNRF2_3hr_r1_rep2


title: Tumor - ETV6-RUNX1+ patient 011


title: A549_shNRF2_6hr_r1_rep2


title: Tumor - ETV6-RUNX1+ patient 010


title: Tumor - TCF3-PBX1+ patient 010


title: Tumor - ETV6-RUNX1+ patient 009


title: Tumor - ETV6-RUNX1+ patient 008


title: Tumor - TCF3-PBX1+ patient 009


title: Tumor - ETV6-RUNX1+ patient 006


title: Tumor - TCF3-PBX1+ patient 008


title: Tumor - ETV6-RUNX1+ patient 005


title: Tumor - ETV6-RUNX1+ patient 002


title: Tumor - ETV6-RUNX1+ patient 001


title: Human in vitro-derived BP/EP (Day 16 Dex cells)

city: Autonomous CIty of Buenos Aires

first: Santiago

middle: Andres

last: Rodriguez Segui

address: Intendente Guiraldes s/n

country: Argentina

institute: IFIBYNE-UBA-CONICET

description: 10X scRNA-seq Processing Pipeline

library_source: transcriptomic single cell

data_processing:
cellranger V3.0.2
Assembly: GRCh38/version 28 (Ensembl 92)
Supplementary files format and content: cellranger filtered gene-barcode matrices

molecule: polyA RNA

source_name: Day 16 single cell suspension derived from FSPS13.B hiPSCs

growth_protocol: Single cell libraries were generated from the FSPS13.B hiPSC line, which was differentiated along the pancreatic lineage.

extract_protocol:
For the preparation of cells for single-cell sequencing we used the Chromium Single Cell 3′ library and gel bead kit v2 protocol.
Single cell libraries from Day 13 and Day 16 treated and untreated samples were generated using the Chromium Single Cell 3′ library and gel bead kit v2 (PN #120237) from 10x Genomics. Briefly, to reach a target cell number of 3,000 cells per sample, 5,000 cells per sample were loaded onto a channel of the 10x chip to produce Gel Bead-in-Emulsions (GEMs). This underwent reverse transcription to barcode RNA before cleanup and cDNA amplification followed by enzymatic fragmentation and 5′adaptor and sample index attachment. Libraries were sequenced on the HiSeq4000 (Illumina).

treatment_protocol: Human iPSCs were passaged and seeded onto 12-well plates using E8 supplemented with Y27632 (Rho-associated, coiled-coil containing protein kinase, ROCK Inhibitor; 10μM). Cells were plated as single cells and the plating density was optimised for each hiPSC line (approximately 80,000 to 100,000 cells per well of a 12-well plate). After 24 hours, the media was replaced with fresh E8 media without ROCK Inhibitor. To induce definitive-endoderm differentiation (days 1-3), cells were cultured in Chemically Defined Medium + Poly(vinyl alcohol) (CDM-PVA) supplemented with Activin (100ng/ml), FGF2 (80ng/ml), BMP4 (10ng/ml), Ly294002 (10μM) and CHIR99021 (3μM) on day 1, CDM-PVA supplemented with Activin (100ng/ml), FGF2 (80ng/ml), BMP4 (10ng/ml) and Ly294002 (10μM) on day 2 and then RPMI/B27 media containing Activin (100ng/ml) and FGF2 (80ng/ml) on day 3. For primitive gut tube differentiation (days 4-6), cells were cultured in AdvDMEM-BSA media supplemented with SB-431542 (10μM), FGF10 (50ng/ml), retinoic acid (RA, 3μM), Noggin (150ng/ml) and L-Ascorbic acid (250μM) for 3 days, changed every 24 hours. For posterior foregut differentiation (days 7-8), cells were cultured in AdvDMEM-BSA with FGF10 (50ng/ml), RA (1μM), Noggin (150ng/ml), KAAD-cyclopamine (0.238μM), PdBU (50nM) and L-Ascorbic acid (250μM). Pancreatic progenitor specification (days 9-13) was induced by culturing cells in AdvDMEM-BSA media supplemented with RA (100 nM), Noggin (150ng/ml), KAAD-cyclopamine (0.238μM), EGF (100ng/ml), Nicotinamide (10mM), and L-Ascorbic acid (250μM) for 5 days. Cells were then grown in AdvDMEM-BSA containing glucose (final concentration 25mM), B27 (1%), RA (100nM), DAPT (1μM), Alk5i (10μM) and the small molecule BNZ (0.1mM) for 3 days to induce maturation of pancreatic progenitors to endocrine progenitor cells (fifth stage; days 14-16).  To generate the treatments of Day 13 and Day 16 cells, dexamethasone (Dex, 100nM) or the EtOH vehicle (Ctrl) were added to the corresponding culture medium composition 24 h before cell collection. Thus, to generate Day 13 treated and untreated cells, Dex or EtOH was added on day 12 to the days 9-13 media composition. To generate Day 16 treated and untreated cells, Dex or EtOH was added on day 15 to the days 14-16 media composition.

value: FSPS13.B hiPSC line

value: Day 16

value: WT

value: Dexamethasone


title: Tumor - ETV6-RUNX1+ patient 003

value: M


title: Human in vitro-derived BP/EP (Day 16 Ctrl cells)

description: 10X scRNA-seq Processing Pipeline

value: Day 16 single cell suspension derived from FSPS13.B hiPSCs

value: EtOH


title: Tumor - ETV6-RUNX1+ patient 004


title: Human in vitro-derived MPC (Day 13 Dex cells)

description: 10X scRNA-seq Processing Pipeline

source_name: Day 13 single cell suspension derived from FSPS13.B hiPSCs

value: Day 13


title: Normal Skin

city: Stanford

first: Michael

last: Januszyk

state: CA

address: 257 Campus Dr

institute: Stanford University

data_processing:
FASTQ files were aligned to the pig genome (sscrofa11.1) using Cell Ranger (10X Genomics; version 7.1.0).
Cell barcodes representative of quality cells were differentiated from apoptotic cell barcodes or background RNA based on a threshold of having at least 500 unique transcripts profiled and less than 50,000 total transcripts. Unique molecular identifiers (UMIs) from each cell barcode were retained for all downstream analysis, normalized with a scale factor of 10,000 UMIs per cell, and subsequently natural log transformed with a pseudocount of 1 using the R package Seurat (version 5.0.1) (Chen et al., 2013).
The first 30 principal components of the aggregated data were then used for uniform manifold approximation and projection (UMAP) analysis. Cell annotation was performed manually. Cell-type marker lists were generated using Seurat’s native FindMarkers function with a log fold change threshold of 0.25 using the ROC test to assign predictive power to each gene.
Assembly: Sus_scrofa.Sscrofa11
Supplementary files format and content: 10X genomics CellRanger output triad (barcodes/features/matrix) from the cannonical outs/filtered_feature_bc_matrix folder, all in their .gz formats

organism: Sus scrofa

source_name: skin

extract_protocol:
Pig tissue skin specimens were harvested fresh and immediately minced on ice. The tissue was then digested for 60 min in a 37 °C water bath agitator in 1 mg/mL collagenase (collagenase type II: IV, ThermoFisher) digest buffer in DMEM/F12. The digest was quenched with quench media (DMEM [Gibco DMEM, ThermoFisher] with 10% FBS), then centrifuged at 300 × g for 5 min at 4 °C, resuspended in quench media, and filtered through 100, 70, and 40 μm cell strainers (Falcon cell strainer, ThermoFisher). Cells were counted and re-suspended for further processing.
Single-cell RNA-seq (scRNA-seq) was then performed at the Stanford Genomics Facility (SGF) for droplet-based microfluidics using the 10x Chromium Single Cell platform (Single Cell 3’ v3, 10x Genomics, USA). Droplets of the cellular suspensions, reverse transcription master mix, and partitioning oil were mixed, loaded onto a single cell chip, and processed on the Chromium Controller. Reverse transcription was performed, and cDNA was amplified using a BioRad C1000 Touch thermocycler, with cDNA size selected using SpriSelect beads (Beckman Coulter, USA). An Agilent Bioanalyzer High Sensitivity DNA chip was used to analyze cDNA for qualitative control purposes; cDNA was then fragmented using the proprietary fragmentation enzyme blend for 5min at 32°C, followed by end repair and A-tailing at 65°C for 30 min. DNA was double-sided size selected using SpriSelect beats. Sequencing adaptors were ligated to the cDNA at 20°C for 15min. cDNA was amplified using a sample-specific index oligo as primer, followed by another round of double-sided size selection using SpriSelect beads.
Final libraries were analyzed on an Agilent Bioanalyzer High Sensitivity DNA chip for qualitative control purposes. Libraries were sequenced on a NextSeq 500 Illumina platform targeting 50,000 reads per cell.

treatment_protocol: Skin tissue pigs treated with irridation (control) vs Deferoxamine (DFO) treatment with different regimes.

value: skin

value: all cells (unsorted)

value: red duroc pig


title: Human in vitro-derived MPC (Day 13 Ctrl cells)

description: 10X scRNA-seq Processing Pipeline

value: Day 13 single cell suspension derived from FSPS13.B hiPSCs


title: Chronictreatment of DFO TDDS Patch 1mg (4 weeks after recovery of radiation)


title: Tumor - ETV6-RUNX1+ patient 012


title: gpr85-expressing cells from adult zebrafish Gpr85-KO brain

city: bruxelles

first: Romain

last: DARCHE-GABINAUD

address: 808 route de lennik

department: IRIBHM, Jacques E. Dumont

country: Belgium

institute: Université libre de bruxelles

description:
Library name: Sample 2
10x Genomics

data_processing:
Raw sequencing data were processed using Cell Ranger (v7.1.0) with a custom-built reference based on the zebrafish reference genome GRCz11 and gene annotation Ensembl 92 in which the GFP sequence was added. Data were analyzed through the Seurat Package in R, keeping only cells having between 500 to 10,000 counts with less than 7.5% of genes coming from the mitochondrial genome. SCTransform was used as the scaling method.
Assembly: GRCz11
Supplementary files format and content: Tab-separated values files and matrix files

organism: Danio rerio

source_name: Adult brain

extract_protocol:
Adult zebrafish brains were dissected and digested with 14 U papain (Sigma-Aldrich, p4762) at 33°C for 10 to 15 minutes in 0.9X Dulbeccoʹs Phosphate Buffered Saline (DPBS). Cell suspensions were washed and centrifuged (300 g) in 2% fetal bovine serum diluted in 0.9X DPBS (FACS buffer). Then, cells were resuspended in FACS buffer and filtered using a sterile 40 µm nylon mesh (VWR). Cell sorting of eGFP+ cells was performed on a FACS ARIA (Becton Dickinson, San Jose, CA) using Sytox Red (5 nM, Thermofisher scientific S34859) in order to remove dead cells. 50,000 cells were sorted per condition with an expected final density of 294 cells/µL.
The library was prepared following 10x Genomics Chromium Single cell 3’ kit (v3) guidelines.

value: Adult brain


title: gpr85-expressing cells from adult zebrafish Gpr85-Ctl brain

description:
Library name: Sample 1
10x Genomics


title: Tumor - ETV6-RUNX1+ patient 007


title: gh3.10 jar1-12 flowers, rep2

city: Goettingen

first: Ivo

last: Feussner

address: Justus-von-Liebig-Weg 11

department: Dept. for Plant Biochemistry

country: Germany

institute: University of Goettingen

description: Library name: gh3.10 jar1-12 flowers_2

data_processing:
Data processing was performed by Novogene, using the following software: Mapping: hisat2 (2.0.5), Assembly: Stringtie (1.3.3b), Quantification: featureCounts (1.5.0-p3), Differential Analysis: DESeq2 (1.20.0) and edgeR (3.22.5)
Assembly: Arabidopsis thaliana: ensemblplants_arabidopsis_thaliana_tair10_gca_000001735_1
Supplementary files format and content: Single tab-delimited text files include raw counts for each gene per sample
Supplementary files format and content: Tab-delimited text file includes all differentially expressed genes including p values as well as counts and fpkm values for each gene in each sample

organism: Arabidopsis thaliana

source_name: Flowers

growth_protocol: Col0 wildtype and gh3.10 jar1 knockout lines gh3.10 jar1-1, gh3.10 jar1-11 and gh3.10 jar1-12 were grown on soil in a climate chamber in long-day conditions (16 h/8 h light/dark cycle, 22°C, 60% humidity, and light intensity of 100 µmol m-2 s-1). Flower material was harvested from flower stages 13 to 15 and pooled (Smyth et al. 1990). Samples are from one experiment with three independent biological replicates.

extract_protocol:
Total RNA was extracted from 100 mg frozen and homogenised tissue using the Quick-RNA Plant Kit (Zymo Research Europe, Freiburg).
Library preparation was performed based on polyA enrichment using directional mRNA library preparation @ Novogene

value: Flowers


title: gh3.10 jar1-11 flowers, rep2

description: Library name: gh3.10 jar1-11 flowers_2


title: gh3.10 jar1-11 flowers, rep3

description: Library name: gh3.10 jar1-11 flowers_3


title: gh3.10 jar1-12 flowers, rep1

description: Library name: gh3.10 jar1-12 flowers_1


title: gh3.10 jar1-1 flowers, rep3

description: Library name: gh3.10 jar1-1 flowers_3


title: gh3.10 jar1-11 flowers, rep1

description: Library name: gh3.10 jar1-11 flowers_1


title: gh3.10 jar1-1 flowers, rep2

description: Library name: gh3.10 jar1-1 flowers_2


title: Irradiated Skin

value: Irradiated Skin


title: gh3.10 jar1-1 flowers, rep1

description: Library name: gh3.10 jar1-1 flowers_1


title: mock treatment at 24h_3

city: Nanjing

first: Yuwen

last: Zhang

address: No. 1, Weigang, Xiaolingwei Street

institute: Nanjing agricultural university

data_processing:
Raw data were also cleaned using Fastp v.0.20. Cleaned reads were aligned to the rice reference genome using STAR v.2.7.8a with a splicing-aware method and two-pass mode.
The aligned reads were assembled separately into transcripts for each sample with the reference annotation-based transcript assembly algorithm and generated an updated transcript annotation with a gene transfer format (GTF)-formatted file using StringTie v.2.1.3.
Finally, the expression level of genes was quantified and normalized with the above-updated GTF file using HTSeq, respectively.
Only the genes with a fragments per kilobase of transcript per million fragments mapped >1 in at least six samples were used for downstream gene expression analysis.
Assembly: Col-PEK
Supplementary files format and content: "FPKM.xls" contains the FPKM of each gene
Supplementary files format and content: "Readcount.xls" contains the readcount of each gene

source_name: roots

extract_protocol:
Total RNA was extracted using TRIzol reagent and digested with RNase-free DNase (Qiagen) according to the manufacturer’s instructions.
Purification of poly-A messenger RNA and construction of complementary DNA were accomplished with a TruSeq RNA Library Preparation Kit (Illumina).

value: roots

value: root meristem cell


title: mock treatment at 24h_2


title: Acute treatment of DFO TDDS Patch 1mg (12 weeks of recovery after radiation)


title: mock treatment at 12h_1


title: gh3.10 jar1-12 flowers, rep3

description: Library name: gh3.10 jar1-12 flowers_3


title: Col-0 flowers, rep3

description: Library name: Col0 flowers_3

value: Col-0 wild-type


title: Continuoustreatment of DFO TDDS Patch 1mg (18 weeks total following the entire span of the experiment)


title: Col-0 flowers, rep2

description: Library name: Col0 flowers_2


title: Col-0 flowers, rep1

description: Library name: Col0 flowers_1


title: mock treatment at 6h_2


title: mock treatment at 24h_1


title: mock treatment at 12h_2


title: Pretreatment of DFO TDDS Patch 1mg (2 weeks prior to radiotherapy)


title: AtCEP5 treatment at 24h_3


title: mock treatment at 6h_1


title: AtCEP5 treatment at 24h_1


title: mock treatment at 12h_3


title: AtCEP5 treatment at 12h_2


title: AtCEP5 treatment at 24h_2


title: AtCEP5 treatment at 6h_2


title: mock treatment at 6h_3


title: AtCEP5 treatment at 6h_3


title: before treatment_3


title: AtCEP5 treatment at 12h_1


title: before treatment_2


title: before treatment_1


title: AtCEP5 treatment at 12h_3


title: Amiodarone modeling group,scRNAseq

city: Jinan

first: zhao

last: shan

address: No. 16369, Jingshi Road

institute: Affiliated Hospital of Shandong University of Traditional Chinese Medicine

description:
Library name: AM
BD Rhapsody

data_processing:
Raw sequencing reads of the cDNA library were processed through the BD Rhapsody Whole Transcriptome Assay
Assembly: mRatBN7.2.106
Supplementary files format and content: Tab-separated values files and matrix files

organism: Rattus norvegicus

source_name: lung

extract_protocol:
Cell suspension samples were made up of equal numbers of cells selected from each group. Single cells were stained with Calcein AM and Draq7, and cell numbers and viability were determined with a BD Rhapsody™ scanner (BD Biosciences).The cells were loaded in one BD Rhapsody micro-well cartridge, followed by the cell capture beads in excess to ensure that nearly every micro-well contains one bead. The excess beads were washed off so that each microwell had a bead with unique molecular identifiers (UMI) and Barcode paired with a cell. After lysing the cells with lysis buffer, the cell capture beads were retrieved and washed prior to performing reverse transcription.
scRNAseq

value: lung

value: Amiodarone


title: Lipopolysaccharide modeling group,scRNAseq

description:
Library name: LPS
BD Rhapsody

value: Lipopolysaccharide


title: Silica modeling  group,scRNAseq

description:
Library name: SIO2
BD Rhapsody

value: Silica


title: Bleomycin modeling group,scRNAseq

description:
Library name: BLM
BD Rhapsody

value: Bleomycin


title: DC,scRNAseq

description:
Library name: control
BD Rhapsody

value: saline


title: [2nd exp] alveolar macrophages, Bayertitan, non-overload, biol rep1

city: Woluwé

first: Jérôme

last: Ambroise

address: Avenue Hippocrate 54

department: Institut de Recherche Expérimentale et Clinique

institute: Université catholique de Louvain

data_processing:
All sequencing data were analyzed using the Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data (ARMOR v1.5.4) pipeline48.
In this pipeline, reads underwent a quality check using FastQC (Babraham Bioinformatics). Quantification and quality control results were summarized in a MultiQC report before being mapped using Salmon to the transcriptome index which was built using all Ensembl cDNA sequences obtained in the Rattus_norvegicus.Rnor_6.0.cdna.all.fa file.
Assembly: Rattus_norvegicus.Rnor_6.0.cdna.all.fa
Supplementary files format and content: excell file with the counts matrix

source_name: Primary alveolar macrophages

growth_protocol: Primary alveolar macrophages were maintained during 5 days in DMEM supplemented with 10% fetal bovine serum (FBS) and 1 % antibiotic-antimycotic (AA) in humidified atmosphere with 5% CO2 at 37°C

extract_protocol:
RNA was extracted using the RNeasy Mini Kit (Qiagen) following the manufacturer’s instructions. Residual DNA was removed by on-column DNase digestion using the RNAse-Free DNase Set (Qiagen)
The Libraries were prepared starting from 150 ng of total RNA using the KAPA RNA HyperPrep Kit with RiboErase (HMR) (KAPA Biosystems, KK8560) following the manufacturer’s recommendations (KR1351 – v1.16).

treatment_protocol: Cells were exposed during 4 days to control, non-overload or overload conditions of G1-1, Printex90, G3-1 or Bayertitan particles

value: Primary alveolar macrophages

tag: strain

value: F344/HanZtmRj rats

value: Male

value: Bayertitan

tag: time

value: 4 days


title: [2nd exp] alveolar macrophages, Bayertitan, non-overload, biol rep2


title: [2nd exp] alveolar macrophages, Bayertitan, control, biol rep2


title: [2nd exp] alveolar macrophages, Bayertitan, overload, biol rep3


title: [2nd exp] alveolar macrophages, Bayertitan, control, biol rep1


title: [2nd exp] alveolar macrophages, G3-1, overload, biol rep2


title: AtCEP5 treatment at 6h_1


title: [2nd exp] alveolar macrophages, G3-1, overload, biol rep1


title: HCC827_Osim_rep1

type: RNA

city: Kanazawa

first: Shin-ichi

last: Horike

state: Ishikawa

address: 13-1 Takaramachi

department: Research Center for Experimental Modeling of Human Disease

country: Japan

institute: Kanazawa University

description: Gene expression in HCC827 cells expressing control shRNA (Scr) treated  with 50 nM osimertinib for 6 hours.

hyb_protocol: 0.6µg of Cy3-labelled cRNA (specific activity >25.0 pmol Cy3/µg cRNA) was fragmented at 60˚C for 30 minutes in a reaction volume of 25µl containing 1x Fragmentation Buffer (Agilent) and 2x Blocking Agent (Agilent) following the manufacturer's instructions. On completion of the fragmentation reaction, 25µl of 2x GE Hybridization Buffer HI-RPM(Agilent) was added to the fragmentation mixture and hybridized to SurePrint G3 Human GE microarray 8x60K Ver. 3.0 (G4858A #72363, Agilent Technologies) for 17 hours at 65˚C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37˚C GE Wash buffer 2 (Agilent), then dried immediately.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2539A) using one color scan setting for 1 x 60K array slides (Scan Area 61x21.6 mm, Scan resolution 3µm, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 11.0.1.1 (Agilent) using default parameters (protocol AgilentG3_GX_1Color and Grid: 074809_D_F_20150624) to obtain background subtracted and spatially detrended Processed Signal intensities.

source_name: HCC827, Osimertinib treated cell, replicate 1

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.2 ug RNA using the Low Input Quick Amp Labeling Kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% FBS and 1%penicillin/streptomycin

extract_protocol: Total RNA was extracted withRNAiso Plus (TAKARA Bio, Japan) according to the manufacturer's instructions.

treatment_protocol: HCC827 cells expressing control shRNA (Scr) were treated with or without 50 nM osimertinib for 6 hours.

value: Cancer cell line


title: HCC827_CTL_rep1

description: Gene expression in HCC827 cells expressing control shRNA (Scr) treated  without 50 nM osimertinib for 6 hours.

source_name: HCC827, control cell, replicate 1


title: HCC827_Osim_rep2

source_name: HCC827, Osimertinib treated cell, replicate 2


title: HCC827_CTL_rep2

source_name: HCC827, control cell, replicate 2


title: [2nd exp] alveolar macrophages, G3-1, non-overload, biol rep3


title: [2nd exp] alveolar macrophages, G3-1, non-overload, biol rep1


title: [2nd exp] alveolar macrophages, G3-1, control, biol rep3


title: [2nd exp] alveolar macrophages, Bayertitan, overload, biol rep1


title: [2nd exp] alveolar macrophages, Bayertitan, non-overload, biol rep3


title: [2nd exp] alveolar macrophages, G3-1, control, biol rep1


title: [2nd exp] alveolar macrophages, Bayertitan, overload, biol rep2


title: [2nd exp] alveolar macrophages, G3-1, control, biol rep2


title: [2nd exp] alveolar macrophages, Bayertitan, control, biol rep3


title: [2nd exp] alveolar macrophages, G3-1, overload, biol rep3


title: [2nd exp] alveolar macrophages, Printex90, overload, biol rep2