title: Murine cornea, 3 months, 48 hours post-abrasion, contralateral, replicate #3

description: Library name: E3L_S43


title: Murine cornea, 3 months, 48 hours post-abrasion, ipsilateral, replicate #1

status: Public on Apr 04 2025

type: SRA

city: Montpellier

first: Frederic

last: Michon

address: 80, rue Augustin Fliche

department: Institute for Neurosciences of Montpellier

country: France

institute: Inserm

description: Library name: E1R_S46

library_source: transcriptomic

data_processing:
bcl2fastq2 Conversion Software was used to convert BCL files to FASTQ file format and demultiplex samples.
Sequenced reads were trimmed for adapter sequence, and masked for low-complexity or low-quality sequence using Trimmomatic. Parameters used: :2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36
Trimmed reads were mapped to GENCODE mouse Release M30 reference genome (GRCm39) and annotation files using STAR aligner with parameters  --runThreadN 20 --chimSegmentMin 12 --chimJunctionOverhangMin 12 --chimSegmentReadGapMax 3 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --alignIntronMin 20 --alignIntronMax 1000000 --alignMatesGapMax 1000000 --alignSJstitchMismatchNmax 5 -1 5 5 --outFilterType BySJout --outFilterMismatchNmax 999 --outSAMattributes NH HI NM MD AS nM jM jI XS --outSAMtype BAM SortedByCoordinate --outSAMmapqUnique 60 --quantMode GeneCounts --twopassMode Basic
Counts per gene were calculated using featureCounts software. Parameters used: -s 2 -T 20 -t exon -g gene_id
Differential expression analysis used the DESeq2 software in R environment. Procedures included: Normalization of count values between samples using a geometric means, using negative binomial linear model and Wald test to produce p-values, removal of low-expression outliers (using Cook's distance)  to optimize for p-value adjustment and finally, multiple testing adjustment of p-values with Benjamini-Hochberg procedure.
Assembly: GENCODE mouse Release M30 reference genome (GRCm39)
Supplementary files format and content: tab delimited count files

molecule: total RNA

organism: Mus musculus

source_name: Cornea

extract_protocol:
Trizol + QIAGEN Rneasy extraction kit
Illumina Stranded Total RNA Prep with Ribo-Zero Plus

tag: tissue

value: Cornea

tag: genotype

tag: treatment

value: 48 hours after mechanical abrasion

tag: batch


title: Murine cornea, 3 months, 48 hours post-abrasion, ipsilateral, replicate #2

description: Library name: E2R_S47


title: Murine cornea, 3 months, 24 hours post-abrasion, contralateral, replicate #5

description: Library name: D5L_S35

value: 24 hours after mechanical abrasion


title: Murine cornea, 3 months, 24 hours post-abrasion, ipsilateral, replicate #4

description: Library name: D4R_S39


title: Murine cornea, 3 months, 24 hours post-abrasion, contralateral, replicate #4

description: Library name: D4L_S34


title: Murine cornea, 3 months, 48 hours post-abrasion, contralateral, replicate #1

description: Library name: E1L_S41


title: Murine cornea, 3 months, 24 hours post-abrasion, ipsilateral, replicate #5

description: Library name: D5R_S40


title: Murine cornea, 3 months, 24 hours post-abrasion, ipsilateral, replicate #2

description: Library name: D2R_S37


title: Murine cornea, 3 months, 24 hours post-abrasion, contralateral, replicate #3

description: Library name: D3L_S33


title: Murine cornea, 3 months, 24 hours post-abrasion, ipsilateral, replicate #3

description: Library name: D3R_S38


title: Murine cornea, 3 months, 24 hours post-abrasion, ipsilateral, replicate #1

description: Library name: D1R_S36


title: Murine cornea, 3 months, 24 hours post-abrasion, contralateral, replicate #2

description: Library name: D2L_S32


title: Murine cornea, 3 months, 18 hours post-abrasion, ipsilateral, replicate #5

description: Library name: C5R_S25

value: 18 hours after mechanical abrasion


title: Murine cornea, 3 months, 24 hours post-abrasion, contralateral, replicate #1

description: Library name: D1L_S31


title: Murine cornea, 3 months, 18 hours post-abrasion, contralateral, replicate #5

description: Library name: C5L_S30


title: Murine cornea, 3 months, 18 hours post-abrasion, contralateral, replicate #4

description: Library name: C4L_S29


title: Murine cornea, 3 months, 18 hours post-abrasion, ipsilateral, replicate #3

description: Library name: C3R_S23


title: Murine cornea, 3 months, 18 hours post-abrasion, ipsilateral, replicate #2

description: Library name: C2R_S22


title: Murine cornea, 3 months, 18 hours post-abrasion, ipsilateral, replicate #1

description: Library name: C1R_S21


title: Murine cornea, 3 months, 18 hours post-abrasion, contralateral, replicate #2

description: Library name: C2L_S27


title: Murine cornea, 3 months, 12 hours post-abrasion, ipsilateral, replicate #5

description: Library name: B5R_S15

value: 12 hours after mechanical abrasion


title: Murine cornea, 3 months, 12 hours post-abrasion, contralateral, replicate #5

description: Library name: B5L_S20


title: Murine cornea, 3 months, 18 hours post-abrasion, contralateral, replicate #3

description: Library name: C3L_S28


title: Murine cornea, 3 months, 18 hours post-abrasion, contralateral, replicate #1

description: Library name: C1L_S26


title: Murine cornea, 3 months, 12 hours post-abrasion, ipsilateral, replicate #4

description: Library name: B4R_S14


title: Murine cornea, 3 months, 12 hours post-abrasion, contralateral, replicate #4

description: Library name: B4L_S19


title: Murine cornea, 3 months, 12 hours post-abrasion, ipsilateral, replicate #3

description: Library name: B3R_S13


title: Murine cornea, 3 months, 48 hours post-abrasion, contralateral, replicate #2

description: Library name: E2L_S42


title: Murine cornea, 3 months, 12 hours post-abrasion, ipsilateral, replicate #2

description: Library name: B2R_S12


title: Murine cornea, 3 months, 12 hours post-abrasion, contralateral, replicate #2

description: Library name: B2L_S17


title: Murine cornea, 3 months, 12 hours post-abrasion, ipsilateral, replicate #1

description: Library name: B1R_S11


title: Murine cornea, 3 months, 6 hours post-abrasion, ipsilateral, replicate #5

description: Library name: A5R_S5

value: 6 hours after mechanical abrasion


title: Murine cornea, 3 months, 12 hours post-abrasion, contralateral, replicate #3

description: Library name: B3L_S18


title: Murine cornea, 3 months, 12 hours post-abrasion, contralateral, replicate #1

description: Library name: B1L_S16


title: Murine cornea, 3 months, 6 hours post-abrasion, ipsilateral, replicate #4

description: Library name: A4R_S4


title: Murine cornea, 3 months, 6 hours post-abrasion, contralateral, replicate #4

description: Library name: A4L_S9


title: Murine cornea, 3 months, 6 hours post-abrasion, ipsilateral, replicate #3

description: Library name: A3R_S3


title: Murine cornea, 3 months, 6 hours post-abrasion, contralateral, replicate #5

description: Library name: A5L_S10


title: Murine cornea, 3 months, 6 hours post-abrasion, contralateral, replicate #2

description: Library name: A2L_S7


title: Murine cornea, 3 months, 6 hours post-abrasion, contralateral, replicate #1

description: Library name: A1L_S6


title: Murine cornea, 3 months, 6 hours post-abrasion, ipsilateral, replicate #1

description: Library name: A1R_S1


title: Murine cornea, 3 months, 18 hours post-abrasion, ipsilateral, replicate #4

description: Library name: C4R_S24


title: Muscle, HFD, VhlKO, Animal 4

city: Chicago

first: Clara

middle: Bien

last: Peek

state: IL

address: 303 E Superior St

department: Biochemistry and Molecular Genetics

country: USA

institute: Feinberg School of Medicine - Northwestern University

description:
Library name: HFD_VhlKO_4
Column name in processed data files: HFD_VhlKO_4

data_processing:
FASTQ files were trimmed using BBduk from BBTools v35.92 according to Lexogen QuantSeq manufacturer’s parameters and sequence quality was assessed with FastQC v0.11.4.
Reads were mapped to mm10 using STAR v2.6.0 and annotated using GRCm38.p4.
Uniquely mapped reads were counted using HTSeq.
Significantly differentially expressed genes were determined using EdgeR v3.26.8 and an adjusted p-value of 0.01.
Assembly: mm10
Supplementary files format and content: tab-delimited text file includes raw counts for each sample
Supplementary files format and content: tab-delimited text file includees normalized counts for each sample

source_name: Gastrocnemius Muscle

extract_protocol:
TRIzol was added to snap frozen whole gastrocnemius muscle and was homogenized using the Qiagen TissueLyser. Following homogenization, RNA was extracted using the Direct-zol RNA Kit (Zymo Research). 300ng of RNA was used for library construction.
Libraries for RNA-seq were prepared using the Lexogen QuantSeq 3' mRNA-seq FWD Kit for Illuming sequencing according to manufacturer's protocols.

value: Gastrocnemius Muscle

value: VhlKO

value: High-fat diet


title: Muscle, HFD, VhlKO, Animal 2

description:
Library name: HFD_VhlKO_2
Column name in processed data files: HFD_VhlKO_2


title: Muscle, HFD, Control (Vhlfx/fx), Animal 5

description:
Library name: HFD_VhlFx_5
Column name in processed data files: HFD_VhlFx_5

value: Control (Vhlfx/fx)


title: Muscle, HFD, VhlKO, Animal 1

description:
Library name: HFD_VhlKO_1
Column name in processed data files: HFD_VhlKO_1


title: Muscle, HFD, Control (Vhlfx/fx), Animal 3

description:
Library name: HFD_VhlFx_3
Column name in processed data files: HFD_VhlFx_3


title: Muscle, HFD, Control (Vhlfx/fx), Animal 1

description:
Library name: HFD_VhlFx_1
Column name in processed data files: HFD_VhlFx_1


title: Muscle, HFD, Control (Vhlfx/fx), Animal 2

description:
Library name: HFD_VhlFx_2
Column name in processed data files: HFD_VhlFx_2


title: Muscle, HFD, Control (Vhlfx/fx), Animal 4

description:
Library name: HFD_VhlFx_4
Column name in processed data files: HFD_VhlFx_4


title: Muscle, HFD, Bmal1KO;VhlKO, Animal 4

description:
Library name: HFD_dKO_4
Column name in processed data files: HFD_dKO_4


title: Muscle, HFD, Bmal1KO;VhlKO, Animal 3

description:
Library name: HFD_dKO_3
Column name in processed data files: HFD_dKO_3


title: Muscle, HFD, Bmal1KO;VhlKO, Animal 2

description:
Library name: HFD_dKO_2
Column name in processed data files: HFD_dKO_2


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 6

description:
Library name: HFD_dFx_6
Column name in processed data files: HFD_dFx_6

value: Control (Bmal1fx/fx;Vhlfx/fx)


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 5

description:
Library name: HFD_dFx_5
Column name in processed data files: HFD_dFx_5


title: Muscle, HFD, Bmal1KO;VhlKO, Animal 1

description:
Library name: HFD_dKO_1
Column name in processed data files: HFD_dKO_1


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 1

description:
Library name: HFD_dFx_1
Column name in processed data files: HFD_dFx_1


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 3

description:
Library name: HFD_dFx_3
Column name in processed data files: HFD_dFx_3


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 4

description:
Library name: HFD_dFx_4
Column name in processed data files: HFD_dFx_4


title: Muscle, HFD, Control (Bmal1fx/fx;Vhlfx/fx), Animal 2

description:
Library name: HFD_dFx_2
Column name in processed data files: HFD_dFx_2


title: Muscle, HFD, Bmal1KO, Animal 9

description:
Library name: HFD_Bma1KO_11
Column name in processed data files: HFD_Bmal1KO_11


title: Murine cornea, 3 months, 6 hours post-abrasion, ipsilateral, replicate #2

description: Library name: A2R_S2


title: Muscle, HFD, Bmal1KO, Animal 8

description:
Library name: HFD_Bma1KO_10
Column name in processed data files: HFD_Bmal1KO_10


title: Muscle, HFD, Bmal1KO, Animal 7

description:
Library name: HFD_Bma1KO_9
Column name in processed data files: HFD_Bmal1KO_9


title: Murine cornea, 3 months, 6 hours post-abrasion, contralateral, replicate #3

description: Library name: A3L_S8


title: Muscle, HFD, VhlKO, Animal 3

description:
Library name: HFD_VhlKO_3
Column name in processed data files: HFD_VhlKO_3


title: Muscle, HFD, Bmal1KO, Animal 6

description:
Library name: HFD_Bma1KO_6
Column name in processed data files: HFD_Bmal1KO_6


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 15

description:
Library name: HFD_Bmal1Fx_15
Column name in processed data files: HFD_Bmal1Fx_15

value: Control (Bmal1fx/fx)


title: Muscle, HFD, Control (Vhlfx/fx), Animal 6

description:
Library name: HFD_VhlFx_6
Column name in processed data files: HFD_VhlFx_6


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 13

description:
Library name: HFD_Bmal1Fx_13
Column name in processed data files: HFD_Bmal1Fx_13


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 12

description:
Library name: HFD_Bmal1Fx_12
Column name in processed data files: HFD_Bmal1Fx_12


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 10

description:
Library name: HFD_Bmal1Fx_10
Column name in processed data files: HFD_Bmal1Fx_10


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 11

description:
Library name: HFD_Bmal1Fx_11
Column name in processed data files: HFD_Bmal1Fx_11


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 9

description:
Library name: HFD_Bmal1Fx_9
Column name in processed data files: HFD_Bmal1Fx_9


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 8

description:
Library name: HFD_Bmal1Fx_8
Column name in processed data files: HFD_Bmal1Fx_8


title: Muscle, RC, Bmal1KO, Animal 1

description:
Library name: RC_Bmal1KO_1
Column name in processed data files: RC_Bmal1KO_1

value: Regular chow


title: Muscle, RC, Bmal1KO, Animal 2

description:
Library name: RC_Bmal1KO_2
Column name in processed data files: RC_Bmal1KO_2


title: Muscle, RC, Bmal1KO, Animal 3

description:
Library name: RC_Bmal1KO_3
Column name in processed data files: RC_Bmal1KO_3


title: Muscle, RC, Control (Bmal1/fx/fx), Animal 3

description:
Library name: RC_Bmal1Fx_3
Column name in processed data files: RC_Bmal1Fx_3


title: Muscle, RC, Control (Bmal1/fx/fx), Animal 2

description:
Library name: RC_Bmal1Fx_2
Column name in processed data files: RC_Bmal1Fx_2


title: Muscle, HFD, Bmal1KO, Animal 5

description:
Library name: HFD_Bmal1KO_5
Column name in processed data files: HFD_Bmal1KO_5


title: Muscle, HFD, Bmal1KO, Animal 3

description:
Library name: HFD_Bmal1KO_3
Column name in processed data files: HFD_Bmal1KO_3


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 7

description:
Library name: HFD_Bmal1Fx_7
Column name in processed data files: HFD_Bmal1Fx_7


title: Muscle, HFD, Bmal1KO, Animal 1

description:
Library name: HFD_Bmal1KO_1
Column name in processed data files: HFD_Bmal1KO_1


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 6

description:
Library name: HFD_Bmal1Fx_6
Column name in processed data files: HFD_Bmal1Fx_6


title: Muscle, HFD, Bmal1KO, Animal 2

description:
Library name: HFD_Bmal1KO_2
Column name in processed data files: HFD_Bmal1KO_2


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 4

description:
Library name: HFD_Bmal1Fx_4
Column name in processed data files: HFD_Bmal1Fx_4


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 5

description:
Library name: HFD_Bmal1Fx_5
Column name in processed data files: HFD_Bmal1Fx_5


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 3

description:
Library name: HFD_Bmal1Fx_3
Column name in processed data files: HFD_Bmal1Fx_3


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 14

description:
Library name: HFD_Bmal1Fx_14
Column name in processed data files: HFD_Bmal1Fx_14


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 1

description:
Library name: HFD_Bmal1Fx_1
Column name in processed data files: HFD_Bmal1Fx_1


title: Muscle, HFD, Control (Bmal1/fx/fx), Animal 2

description:
Library name: HFD_Bmal1Fx_2
Column name in processed data files: HFD_Bmal1Fx_2


title: heart, KO-117

city: Goettingen

first: Gabriela

last: Salinas

state: Lower-Saxony

address: Kreuzbergring 57

department: Department of Pathology

country: Germany

institute: Universitaetsmedizin Goettingen

data_processing:
Sequence images were transformed with Illumina software BaseCaller to BCL files, which was demultiplexed to fastq files with bcl2fastq v2.20.0
STAR version 2.7.4 was used to align the reads to the GRCm39 genome using 2 mismatches within 50 bases
featureCounts version 1.5.0-p1 was used to quantify reads for genes in GRCh38 version 110
Assembly: GRCm38 version 110
Supplementary files format and content: Tab-delimited gene counts

source_name: heart

extract_protocol:
RNA isolation was performed using Trizol reagent (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer's instructions. RNA quality was assessed by measuring the RNA integri-ty number (RIN) using a Fragment Analyzer HS Total RNA Kit (Advanced Analytical Technologies, Inc.)
RNA libraries were prepared for sequencing using standard Illumina protocols

value: heart


title: heart, WT-99

value: WT


title: heart, KO-119


title: heart, KO-115


title: heart, KO-111


title: heart, WT-105


title: heart, WT-103


title: heart, KO-109


title: Muscle, RC, Control (Bmal1/fx/fx), Animal 4

description:
Library name: RC_Bmal1Fx_4
Column name in processed data files: RC_Bmal1Fx_4


title: Healthy CNS

city: Austin

first: Ryan

last: Humphrey

state: Texas

address: 1900 Burton Dr. Apt 157

institute: University of Texas at Austin

description: 10X Genomics

library_source: transcriptomic single cell

data_processing:
fastq.gz reads were quantified using Cell Ranger (count version 6.0.1). Data normalization, UMAP-based projections and unsupervised clustering were performed using Seurat (v4.1.1), cluster identities were manually annotated by comparing signature genes to curated databases, including Immgen, Gene Expression Commons; cellxgene was used for visualization and data exploration (https://github.com/chanzuckerberg/cellxgene).
Assembly: mm10
Supplementary files format and content: h5 files for each sample

source_name: CNS

extract_protocol:
T-ALL and myeloid cells were FACS-sorted (CD11b+ and/or CD11c+, myeloid; CD45.1-CD45.2+CD5+, T-ALL) from the CNS of healthy and leukemic mice following cardiac perfusion. Single-cell suspensions were prepared from isolated hematopoetic cells (Percoll gradient separation) and stained for FACS sorting prior to scRNAseq. Sorted cells were collected in cRPMI without EDTA and washed into FWB prior resuspension at a concentration of 700-1,200 cells/microliter. Cells were submitted to UT-Austin's GSAF for scRNA-seq analysis.
Cell suspension were processed for cDNA library generation following manufacturer instructions (10X Genomics) for use with the single cells 3' ragent kit v3.1 (10X). Samples were sequenced using the Illumina NovaSeq platform (SR100 S1 Run type) at read depth of 50,000 reads per cells.

value: CNS

tag: age

value: 6 to 8 weeks

tag: cell type

value: Myeloid, Lymphoid

value: F1, C57BL/6J x B6.SJL-PtprcaPepcbBoyJ


title: Muscle, RC, Control (Bmal1/fx/fx), Animal 1

description:
Library name: RC_Bmal1Fx_1
Column name in processed data files: RC_Bmal1Fx_1


title: Bone marrow, Dnmt3a, DHT, biol rep 2, scRNAseq

city: Boston

first: Julia

last: Stomper

state: MA

address: 360 Longwood Avenue

department: Medical Oncology

institute: Dana-Farber Cancer Institute

description: 10x Genomics

data_processing:
Raw sequencing data were processed with the Cell Ranger pipeline (version 5.0.0 for male/female dataset; version 7.1.0 for hormone treatment dataset).
Assembly: mm10
Supplementary files format and content: Cell Ranger raw_feature_bc_matrix: barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz

source_name: Bone marrow

extract_protocol:
Bone marrow cells were isolated, enriched for c-kit+ cells using CD117 MicroBeads, and sorted for LSK cells using flow cytometry. After cell sorting, samples from mice treated with sex hormones were cryopreserved in FBS with 10% DMSO.
Libraries were prepared using 10x Genomics Single Cell 5' R2-only chemistry.

treatment_protocol: Ovariectomized mice were treated with 1 µg estradiol, 100 µg DHT, or vehicle by subcutaneous injection 14 weeks after non-competitive bone marrow transplantation with WT or Dnmt3a-mutant cells. Bone marrow cells for scRNA-seq were isolated approximately 22 hours after treatment.

value: Bone marrow

value: LSK cells

value: Dnmt3a R878H fl/+ vavCre+

tag: Sex

value: female

value: DHT


title: Bone marrow, Dnmt3a, DHT, biol rep 1, scRNAseq

description: 10x Genomics


title: Leukemic CNS

description: 10X Genomics

value: LMO2 leukemia (T-ALL) engrafted


title: Bone marrow, Dnmt3a, estradiol, biol rep 2, scRNAseq

description: 10x Genomics


title: Muscle, HFD, Bmal1KO, Animal 4

description:
Library name: HFD_Bmal1KO_4
Column name in processed data files: HFD_Bmal1KO_4

value: Gastrocnemius Muscle

value: High-fat diet


title: Bone marrow, Dnmt3a, vehicle, biol rep 1, scRNAseq

description: 10x Genomics

value: vehicle


title: Bone marrow, Dnmt3a, estradiol, biol rep 1, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, DHT, biol rep 1, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, DHT, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, estradiol, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, Dnmt3a, vehicle, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, estradiol, biol rep 1, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, vehicle, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, vehicle, biol rep 1, scRNAseq

description: 10x Genomics


title: Bone marrow, Dnmt3a, female, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, Dnmt3a, male, biol rep 1, scRNAseq

description: 10x Genomics

value: male


title: Bone marrow, Dnmt3a, male, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, female, biol rep 1, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, male, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, WT, female, biol rep 2, scRNAseq

description: 10x Genomics


title: Bone marrow, Dnmt3a, female, biol rep 1, scATACseq

description: 10x Genomics

library_source: genomic single cell

data_processing:
Raw sequencing data were processed with the Cell Ranger ATAC pipeline (version 2.0.0).
Assembly: mm10
Supplementary files format and content: Cell Ranger output files: filtered_peak_bc_matrix.h5, fragments.tsv.gz, fragments.tsv.gz.tbi, peaks.bed, singlecell.csv

molecule: genomic DNA

extract_protocol:
Bone marrow cells were isolated, enriched for c-kit+ cells using CD117 MicroBeads, and sorted for LSK cells using flow cytometry. After cell sorting, samples were cryopreserved in FBS with 10% DMSO.
Libraries were prepared using 10x Genomics Single Cell ATAC workflow.


title: Bone marrow, Dnmt3a, female, biol rep 2, scATACseq

description: 10x Genomics


title: Piezo1iKO, 3-week epithelial specific inducible knock out, ScRNAseq

first: Rui

last: Yi

state: Illinois

address: 765 N FAIRBANKS CT

department: Pathology, Feinberg School of Medicine

institute: Northwestern University

description: 10x Genomics

data_processing:
The demultiplexing, barcoded processing, gene counting and aggregation were made using the Cell Ranger software v6.1.2
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files

source_name: Back skin

extract_protocol:
Fresh back skin sample were clooected from control and Piezo1iKO C57BL/6 mice. The tissues were minced into small pieces and incubated in HBSS with 2.5 mg/ml collagenase I at 37 degress for 2 hours. Tissues and cells were collected by centrifuge and digested by 0.25% trypsin at 37 degree for 7 minutes. Single skin cells were washed by cold PBS.
Library was performed according to the manufacter's instruction (Single cell 3' v3.1 protocol, 10x Genomics). Briefly, back skin cells were resuspended in the master mix and loaded together with gel beads and partitioning oil into the chip to generate the gel bead-in emulsion (GEM). The poly-A RNA from the cell lysate contained in every single GEM was retrotranscribed into cDNA. The pooled the cDNA was cleaned up with Silane DynaBeads, amplified by PCR and appropriate sized fragments were selected for subsequent library construction.

value: Back skin

value: Back skin cells

value: Tomaxifen injection from P48-p52

tag: strain


title: Control, 2-week inducible, ScRNAseq

description: 10x Genomics


title: Piezo1iKO, 2-week epithelial specific inducible knock out, ScRNAseq

description: 10x Genomics


title: MafbcKO_MafbcKOset, scRNAseq

first: Isle

last: Bastille

address: 220 Longwood Avenue

department: Neurobiology

institute: Harvard University

description: 10X Genomics v3.1

data_processing:
Cell Ranger (10X Genomics) was used for de-multiplexing and initial processing; subsequent analysis using count matrix was performed in Seurat. After preliminary clusteriing analysis that identified SGN-specific clusters, cells with high mitochondrial content were discarded before further analysis.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files

molecule: polyA RNA

source_name: whole cochlea

extract_protocol:
Freshly collected cochlea were dissociated with collagenase followed by papain
10X Genomics 3' assay v3.1 Dual-indexed single-cell transcriptomic libraries were created using the 10X Genomics Chromium Single Cell 3' GEM library and Gel Bead Kit v3.1. Libraries were sequenced using the NovaSeq SP6000 100 cyles (Illumina)
Library prep was performed according to manufacturers instructions (single cell 3' v3.1)

value: whole cochlea

value: Mafbfl/GFP


title: cMaf_MafbcDKOset_cDKO, scRNAseq

description: 10X Genomics v3.1


title: Control_MafbcKOset, scRNAseq

description: 10X Genomics v3.1


title: Control2_cMafCKOset, scRNAseq

description: 10X Genomics v3.1

value: cMaffl/fl


title: Control1_cMafcKOset, scRNAseq

description: 10X Genomics v3.1


title: Bone marrow, Dnmt3a, female, biol rep 1, scRNAseq

description: 10x Genomics


title: Female, mock, 4795

city: Seattle

first: Sean

middle: C

last: Murphy

state: WA

address: 750 Republican St

institute: University of Washington

data_processing:
Quality assess sequences with FastQC.
Sequence reads were trimmed for adaptor seqeunce/low-quality seqeunces using AdaptorRemoval and samtools.
Trimmed sequence reads were mapped to GRCm39 (release 106) with STAR aligner.
RNA sequencing libraries were quality filtered by median coefficient of variation coverage <0.75, duplicate mapped reads >0.75, total aligned sequences ≤106. No samples were omitted after this process. Counts were normalized for RNA composition using the trimmed mean of M-values normalization method, filtered to protein-coding genes with ≥0.1 count per million in at least three samples, and converted to log2 count per million with quality weights using voom.
Assembly: GRCm39, release 106.
Supplementary files format and content: tab-delimited text file includes raw counts for each sample with all measured genes.
Supplementary files format and content: tab-delimited text file includes CPM (counts per million)  for each sample hafter filtering and normalization of counts.

source_name: liver

extract_protocol:
Total RNA was extracted from tissue and mRNA library was prepared with TruSeq stranded mRNA (Illumina). Performed at Psomagen Inc (Rockville, MD).
mRNA library was prepared with TruSeq stranded mRNA (Illumina). Performed at Psomagen Inc (Rockville, MD).

treatment_protocol: The murine liver was perfused with perfusion buffer (PBS with 2 mM EDTA). Following perfusion, the left lateral lobe was sectioned and preserved in RNAlater.

value: liver

value: mock

value: Female

tag: time

value: +6 days


title: Control_cDKOset, scRNAseq

description: 10X Genomics v3.1

value: cMaffl/fl;Mafbfl/fl


title: Female, P&T, +44 hours, 4792

value: P&T

value: +44 hours


title: Female, P&T, +44 hours, 4791


title: Female, P&T, +44 hours, 4794


title: Female, mock, 4790


title: Female, P&T, +44 hours, 4793


title: Bone marrow, WT, male, biol rep 1, scRNAseq

description: 10x Genomics

value: Bone marrow

value: LSK cells

value: WT


title: Female, mock, 4785


title: Female, RAS, +6 days, 4786

value: RAS


title: Female, RAS, +44 hours, 4784


title: Female, RAS, +44 hours, 4782


title: Female, RAS, +6 days, 4789


title: Bone marrow, WT, female, biol rep 2, scATACseq

description: 10x Genomics

value: female


title: Bone marrow, WT, female, biol rep 1, scATACseq

description: 10x Genomics


title: Female, mock, 4780


title: Female, RAS, +44 hours, 4783


title: Female, P&T, +6 days, 4779


title: Female, P&T, +6 days, 4778


title: Female, P&T, +6 days, 4777


title: Male, mock, 4760

value: Male


title: Female, P&T, +6 days, 4776


title: Male, P&T, +6 days, 4758


title: Male, P&T, +6 days, 4757


title: Male, P&T, +6 days, 4759


title: Female, RAS, +6 days, 4788


title: Male, mock, 4755


title: Male, P&T, +44 hours, 4753


title: Male, P&T, +44 hours, 4752


title: Male, RAS, +6 days, 4749


title: Male, mock, 4750


title: Male, RAS, +6 days, 4747


title: Male, RAS, +6 days, 4746


title: Male, RAS, +6 days, 4748


title: Male, RAS, +44 hours, 4729


title: Male, RAS, +44 hours, 4728


title: Female, RAS, +44 hours, 4781


title: Male, RAS, +44 hours, 4727


title: Male, mock, 4745


title: Male, RAS, +44 hours, 4726


title: Brain, CD3+ SS2 WT P9 mouse 1 scRNAseq

city: Bonn

first: Joachim

last: Schultze

state: NRW

address: Carl-Troll-Strasse 31

department: Genomics and Immunoregulation

institute: LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)

description:
SmartSeq2
45_8_P9

data_processing:
alignment was performed using kallisto v0.44.0
The transcript abundance files in hdf5 format (Hoefling and Annau 2020) from the pseudo alignment via kallisto v0.44.0 (Bray et al. 2016) were merged and converted into Transcripts per Kilobase Million (TPM) normalised gene expression matrices, with additional length scaling (”lengthScaledTPM”) and otherwise default parameters, via the package tximport v.1.18.0 (Soneson et al. 2015). For that purpose, the transcript to gene annotation file (tx2genes.csv) found in the sequencing results folders was used to associate the corresponding transcript ID to gene ID. The Ensembl IDs were transformed into gene symbols using biomaRt v.2.46.0 (Durinck et al. 2005; Durinck et al. 2009).
Assembly: mm10
Supplementary files format and content: all samples merged to one matrix: tab-separated values files and matrix files

source_name: Brain

extract_protocol:
To isolate immune cells, after perfusion, brains were digested for 45 min in RPMI containing 10 mM HEPES, 0.5 mg/ml Collagenase Type IV (Sigma Aldrich) and 0.05 mg/ml DNase I (Sigma Aldrich) at 37°C. Cells were then isolated using density gradient centrifugation. The isolated brain cells were directly sorted on an BD Aria III cell sorter for sequencing experiments. The left hemisphere was used to sort CD45+ cells to perform scRNAseq with SeqWell v3 (Aicher et al. 2019). The right hemisphere was used for index sorting of CD3+ cells into 384 well plates (Penter et al. 2018) for scRNAseq with SmartSeq2 (Picelli et al. 2014). Only cells isolated with a purity of > 98% were used for further analysis.
CNS T cells from the brains of B57BL/6 Zfyve26-/- 𝐶𝑋𝐶𝑅4;𝐶𝑟𝑒𝐸𝑅(𝑇2)−𝐼𝑅𝐸𝑆−𝐺𝐹𝑃;𝑅26𝐶𝐴𝐺−𝐿𝑆𝐿−𝑡𝑑𝑇 or Zfyve26+/- 𝐶𝑋𝐶𝑅4;𝐶𝑟𝑒𝐸𝑅(𝑇2)−𝐼𝑅𝐸𝑆−𝐺𝐹𝑃;𝑅26𝐶𝐴𝐺−𝐿𝑆𝐿−𝑡𝑑𝑇 animals were isolated as described above. Total RNA was isolated using the miRNeasy Mini Kit (QIAGEN) and transcriptome analysis was performed by SmartSeq2 (Picelli et al. 2014). Per sample, 500 pg RNA was denatured for 2 min at 95°C in 0.1% Triton X-100 containing 0.05 mM dNTP, 2 μM anchored oligodT (Smart dT30VN) primer and 1 U/μl RNase Inhibitor (Takara). Reverse transcription was carried out at 42°C for 90 min followed by 15 min inactivation at 70°C using 5 U/μl Superscript II reverse transcriptase (Thermo Fisher Scientific) in 1X Superscript II Buffer supplemented with 5 mM DTT, 1 M Betaine, 14 mM MgCl2, 1 μM Template Switching Oligo and 1 U/μl RNase Inhibitor. cDNA was then pre-amplified using KAPA HiFi HotStart ReadyMix (Kapa Biosystems) containing 1 nM ISPCR Primer. Amplification was carried out for 16 cycles consisting of 20 s denaturation at 98°C, 20 s annealing at 67°C and 6 min elongation at 72°C each after an initial denaturing at 98°C for 3 min. The pre-amplification reaction was then purified by using a 0.8:1 ratio of AMPure XP beads (Beckman Coulter). DNA was allowed to bind to beads for 3 min at RT followed by one wash in 80% Ethanol for 30 s. cDNA was then eluted from the beads in 15 μl of water before checking for cDNA quality on a Tapestation 2200 using a HighSensitivity D5000 assay (Agilent Genomics) according to manufacturer’s instructions. Tagmentation, PCR amplification and indexing of samples was performed using the Nextera XT DNA Library Preparation Kit (Illumina) according to manufacturer’s recommendations. After library preparation, DNA was purified with a 1:1 ratio of AMPure XP beads and sample. Quantification and quality check of libraries was done on a Tapestation 2200 using a HighSensitivity D5000 Assay. Library concentrations were adjusted to 2nM and pooled prior to sequencing SR 75 bp with two 8 bp index reads on an Illumina NextSeq 500 instrument using High Output v2 chemistry. RNA-seq data was demultiplexed using bcl2fastq2 v2.20 and pseudo aligned to Mus_musculus.GRCm38.cdna.all.fa.gz transcriptome using kallisto v0.44.0 (Bray et al. 2016). The sequences of all oligos used for SmartSeq2 can be found in Table S7. All oligos were biotinylated at the 5′ end to avoid the formation of concatemers.

value: Brain

value: male

value: 15 months


title: Brain, CD3+ SS2 WT P7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P7


title: Male, P&T, +6 days, 4756


title: Brain, CD3+ SS2 WT P18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P18


title: Brain, CD3+ SS2 WT P4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P4


title: Brain, CD3+ SS2 WT P6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P6


title: Brain, CD3+ SS2 WT P19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P19


title: Brain, CD3+ SS2 WT P23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P23


title: Male, P&T, +44 hours, 4754


title: Brain, CD3+ SS2 WT P20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P20


title: Brain, CD3+ SS2 WT P5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P5


title: Brain, CD3+ SS2 WT P8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P8


title: Brain, CD3+ SS2 WT P10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P10


title: Brain, CD3+ SS2 WT O9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O9


title: Brain, CD3+ SS2 WT O8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O8


title: Brain, CD3+ SS2 WT O7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O7


title: Male, P&T, +44 hours, 4751


title: Brain, CD3+ SS2 WT O6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O6


title: Brain, CD3+ SS2 WT O4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O4


title: Brain, CD3+ SS2 WT O20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O20


title: Brain, CD3+ SS2 WT O24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O24


title: Brain, CD3+ SS2 WT O19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O19


title: Brain, CD3+ SS2 WT O21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O21


title: Brain, CD3+ SS2 WT O12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O12


title: Brain, CD3+ SS2 WT O17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O17


title: Brain, CD3+ SS2 WT O18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O18


title: Brain, CD3+ SS2 WT O10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O10


title: Brain, CD3+ SS2 WT N8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N8


title: Brain, CD3+ SS2 WT P12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_P12


title: Brain, CD3+ SS2 WT N7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N7


title: Brain, CD3+ SS2 WT N4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N4


title: Brain, CD3+ SS2 WT N3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N3


title: Brain, CD3+ SS2 WT N5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N5


title: Brain, CD3+ SS2 WT N24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N24


title: Brain, CD3+ SS2 WT N22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N22


title: Brain, CD3+ SS2 WT N23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N23


title: Brain, CD3+ SS2 WT N2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N2


title: Brain, CD3+ SS2 WT N18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N18


title: Brain, CD3+ SS2 WT N20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N20


title: Brain, CD3+ SS2 WT O5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O5


title: Brain, CD3+ SS2 WT N17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N17


title: Brain, CD3+ SS2 WT N16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N16


title: Brain, CD3+ SS2 WT N21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N21


title: Brain, CD3+ SS2 WT N15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N15


title: Brain, CD3+ SS2 WT O22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_O22


title: Brain, CD3+ SS2 WT N14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N14


title: Brain, CD3+ SS2 WT N13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N13


title: Brain, CD3+ SS2 WT N12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N12


title: Brain, CD3+ SS2 WT M8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M8


title: Brain, CD3+ SS2 WT N11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N11


title: Brain, CD3+ SS2 WT M7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M7


title: Brain, CD3+ SS2 WT N1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_N1


title: Brain, CD3+ SS2 WT M6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M6


title: Brain, CD3+ SS2 WT M4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M4


title: Brain, CD3+ SS2 WT M3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M3


title: Brain, CD3+ SS2 WT M22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M22


title: Brain, CD3+ SS2 WT M21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M21


title: Brain, CD3+ SS2 WT M18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M18


title: Brain, CD3+ SS2 WT M19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M19


title: Female, RAS, +6 days, 4787


title: Brain, CD3+ SS2 WT M20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M20


title: Brain, CD3+ SS2 WT M17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M17


title: Brain, CD3+ SS2 WT M16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M16


title: Brain, CD3+ SS2 WT M14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M14


title: Brain, CD3+ SS2 WT M12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M12


title: Brain, CD3+ SS2 WT M11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M11


title: Brain, CD3+ SS2 WT M1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M1


title: Brain, CD3+ SS2 WT L7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L7


title: Brain, CD3+ SS2 WT M10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M10


title: Brain, CD3+ SS2 WT L23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L23


title: Brain, CD3+ SS2 WT L3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L3


title: Brain, CD3+ SS2 WT L22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L22


title: Brain, CD3+ SS2 WT M15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M15


title: Brain, CD3+ SS2 WT L8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L8


title: Brain, CD3+ SS2 WT L21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L21


title: Brain, CD3+ SS2 WT L5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L5


title: Brain, CD3+ SS2 WT L19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L19


title: Brain, CD3+ SS2 WT M5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M5


title: Brain, CD3+ SS2 WT L2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L2


title: Brain, CD3+ SS2 WT L18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L18


title: Brain, CD3+ SS2 WT L17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L17


title: Brain, CD3+ SS2 WT L16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L16


title: Brain, CD3+ SS2 WT L20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L20


title: Brain, CD3+ SS2 WT L15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L15


title: Brain, CD3+ SS2 WT M2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_M2


title: Brain, CD3+ SS2 WT L12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L12


title: Brain, CD3+ SS2 WT L1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L1


title: Brain, CD3+ SS2 WT L13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L13


title: Brain, CD3+ SS2 WT K9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K9


title: Brain, CD3+ SS2 WT L11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L11


title: Brain, CD3+ SS2 WT K8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K8


title: Brain, CD3+ SS2 WT K22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K22


title: Brain, CD3+ SS2 WT K5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K5


title: Brain, CD3+ SS2 WT K19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K19


title: Brain, CD3+ SS2 WT K18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K18


title: Brain, CD3+ SS2 WT K23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K23


title: Brain, CD3+ SS2 WT K21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K21


title: Brain, CD3+ SS2 WT K16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K16


title: Brain, CD3+ SS2 WT K14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K14


title: Brain, CD3+ SS2 WT K15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K15


title: Brain, CD3+ SS2 WT K20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K20


title: Brain, CD3+ SS2 WT K13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K13


title: Brain, CD3+ SS2 WT K1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K1


title: Brain, CD3+ SS2 WT J9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J9


title: Brain, CD3+ SS2 WT J7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J7


title: Brain, CD3+ SS2 WT J5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J5


title: Brain, CD3+ SS2 WT J3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J3


title: Brain, CD3+ SS2 WT K11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K11


title: Brain, CD3+ SS2 WT J24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J24


title: Brain, CD3+ SS2 WT J23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J23


title: Brain, CD3+ SS2 WT J22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J22


title: Brain, CD3+ SS2 WT K4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K4


title: Brain, CD3+ SS2 WT J2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J2


title: Brain, CD3+ SS2 WT J20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J20


title: Brain, CD3+ SS2 WT J19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J19


title: Brain, CD3+ SS2 WT J21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J21


title: Brain, CD3+ SS2 WT L14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_L14


title: Brain, CD3+ SS2 WT J17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J17


title: Brain, CD3+ SS2 WT K17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K17


title: Brain, CD3+ SS2 WT J14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J14


title: Brain, CD3+ SS2 WT J16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J16


title: Brain, CD3+ SS2 WT J15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J15


title: Brain, CD3+ SS2 WT J12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J12


title: Brain, CD3+ SS2 WT J11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J11


title: Brain, CD3+ SS2 WT I24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I24


title: Brain, CD3+ SS2 WT J4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J4


title: Brain, CD3+ SS2 WT J1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J1


title: Brain, CD3+ SS2 WT I23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I23


title: Brain, CD3+ SS2 WT I22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I22


title: Brain, CD3+ SS2 WT I19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I19


title: Brain, CD3+ SS2 WT I20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I20


title: Brain, CD3+ SS2 WT I21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I21


title: Brain, CD3+ SS2 WT I18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I18


title: Brain, CD3+ SS2 WT K24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_K24


title: Brain, CD3+ SS2 WT I16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I16


title: Brain, CD3+ SS2 WT I11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I11


title: Brain, CD3+ SS2 WT I10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I10


title: Brain, CD3+ SS2 WT I12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I12


title: Brain, CD3+ SS2 WT J18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J18


title: Brain, CD3+ SS2 WT I13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I13


title: Brain, CD3+ SS2 WT H9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H9


title: Brain, CD3+ SS2 WT H7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H7


title: Brain, CD3+ SS2 WT H5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H5


title: Brain, CD3+ SS2 WT H22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H22


title: Brain, CD3+ SS2 WT H23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H23


title: Brain, CD3+ SS2 WT J10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_J10


title: Brain, CD3+ SS2 WT H21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H21


title: Brain, CD3+ SS2 WT H20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H20


title: Brain, CD3+ SS2 WT H2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H2


title: Brain, CD3+ SS2 WT H18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H18


title: Brain, CD3+ SS2 WT H19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H19


title: Brain, CD3+ SS2 WT H17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H17


title: Brain, CD3+ SS2 WT H16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H16


title: Brain, CD3+ SS2 WT H3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H3


title: Brain, CD3+ SS2 WT H15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H15


title: Brain, CD3+ SS2 WT H14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H14


title: Brain, CD3+ SS2 WT G24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G24


title: Brain, CD3+ SS2 WT H11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H11


title: Brain, CD3+ SS2 WT G23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G23


title: Brain, CD3+ SS2 WT G22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G22


title: Brain, CD3+ SS2 WT H10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H10


title: Brain, CD3+ SS2 WT G21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G21


title: Brain, CD3+ SS2 WT H24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H24


title: Brain, CD3+ SS2 WT G19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G19


title: Brain, CD3+ SS2 WT G18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G18


title: Brain, CD3+ SS2 WT G17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G17


title: Brain, CD3+ SS2 WT G16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G16


title: Brain, CD3+ SS2 WT G14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G14


title: Brain, CD3+ SS2 WT G15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G15


title: Brain, CD3+ SS2 WT G20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_G20


title: Brain, CD3+ SS2 WT F7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F7


title: Brain, CD3+ SS2 WT F4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F4


title: Brain, CD3+ SS2 WT F3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F3


title: Brain, CD3+ SS2 WT F24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F24


title: Brain, CD3+ SS2 WT F22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F22


title: Brain, CD3+ SS2 WT F21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F21


title: Brain, CD3+ SS2 WT F23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F23


title: Brain, CD3+ SS2 WT F5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F5


title: Brain, CD3+ SS2 WT H12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_H12


title: Brain, CD3+ SS2 WT F17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F17


title: Brain, CD3+ SS2 WT F19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F19


title: Brain, CD3+ SS2 WT F2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F2


title: Brain, CD3+ SS2 WT F16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F16


title: mouse hindlimb field E9.75 H3K27ac input rep2

city: Athens

first: Douglas

last: Menke

state: GA

address: 500 DW Brooks Drive

department: Genetics

institute: University of Georgia

description: PE150 sequencing

library_source: genomic

data_processing:
Libraries were sequenced by the Georgia Genomics and Bioinformatics Core (SE75) or by Genewiz (PE150). The GGBC provided pre-trimmed reads, while Genewiz reads were subsequently trimmed using cutadapt using the settings -O 1, -m 25
RNA-seq reads were aligned to mm10 using STAR (v. 2.7.3a). Transcripts were counted using HTSeq (v. 0.13.5). Differential gene expression was determined using DESeq2 (Galaxy v. 2.11.40.6).
ChIP-seq data were processed using the AQUAS Transcription Factor and Histone ChIP-seq pipeline. We used the pipeline's default bwa aligner to align mouse reads to mm10 (UCSC), chick to galGal6 (UCSC), alligator to allMis0.2/allMis1 (UCSC), turtle to CAS_Tse_1.0 NCBI RefSeq), and lizard to AnoSag2.0 (local genome build). Fragment size was set to 175 (-speak_spp 175, -extsize_macs2 175).
SPP was used to call IDR peaks using the default cutoff (0.05) in ISL1 ChIP-seq experiments performed in duplicate, while MACS2 peaks were used from individual experiments and from H3K27ac datasets. In H3K27ac datasets, the naive overlap peaks were used, while MACS2 peaks from ISL1 ChIP-seq in alligator, turtle, and lizard were filtered using a q-value cutoff of 0.01 and fold-enrichment cutoff of 4. bigWig files were generated using MACS2 and represent fold-enrichment values of ChIP vs control samples.
Mouse forelimb ISL1 ChIP-seq IDR peaks were used as a negative control to filter false-positive peaks from ISL1 peak sets, generating "FL_filtered" files
Assembly: varied by species (see above)
Supplementary files format and content: DESeq2 tabular files, SPP or MACS2 peak files, and MACS2 bigWig files

source_name: hindlimb field

extract_protocol:
For RNA-seq, genital tubercle samples were placed in RNA-Later, which was then removed before freezing samples at -80C. For hindlimb field samples, both sides from each embryo were placed directly into mirVana Lysis/Binding buffer and frozen. RNA was extracted using the mirVana miRNA isolation kit. For ChIP-seq, tissues form multiple embryos were sonified using a probe sonifier followed by a bath sonifier. Lysates were then incubated with the antibody with a portion kept as input DNA.
RNA-seq libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina); ChIP-seq libraries were constructed using the NEBNext Ultra II Library Prep Kit

tag: developmental stage

value: ICR CD-1 outbred (Envigo)

tag: chip antibody


title: Brain, CD3+ SS2 WT F18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F18


title: Brain, CD3+ SS2 WT F15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F15


title: 206960650016_R06C01 Methylation

type: genomic

city: Rochester

first: ARIJIT

last: PANDA

state: MINNESOTA

address: 200 1st street SW

institute: MAYO CLINIC

hyb_protocol: Bisulphite converted DNA was subjected to Illumina FFPE restoration and hybridized to Illumina 450K EPICIllumina arrays

scan_protocol: We scanned the chips using Illumina’s iScan instrument with version 4.2.1 software.

data_processing:
The data package that we returned included the raw scan data (.idat files), as well as some preliminary reports that we generate with Illumina’s GenomeStudio v2011.1 software with the methylation module.
*processed value definition: average methylation

label: green (Cy3) and red (Cy5)

organism: Homo sapiens

source_name: Brain Tumor

label_protocol: Standard Illumina protocol

extract_protocol: Qiagen FFPE DNA isolation

value: Brain Tumor

tag: gender

value: M

value: Mixed Oligodendroglioma-Astrocytoma


title: 206960650016_R07C01 Methylation

value: F

value: Astrocytoma (Grades 2, 3, 4)


title: Brain, CD3+ SS2 WT F13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F13


title: Brain, CD3+ SS2 WT F12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F12


title: Brain, CD3+ SS2 WT F10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F10


title: 206960650016_R01C01 Methylation


title: 206960650016_R03C01 Methylation


title: 206960640075_R08C01 Methylation


title: 206960650016_R05C01 Methylation


title: Brain, CD3+ SS2 WT F11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F11


title: Brain, CD3+ SS2 WT F20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F20


title: Brain, CD3+ SS2 WT E21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E21


title: 206960640075_R05C01 Methylation


title: 206960640075_R04C01 Methylation


title: Brain, CD3+ SS2 WT E20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E20


title: 206960640075_R06C01 Methylation


title: Brain, CD3+ SS2 WT E24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E24


title: 206960640075_R07C01 Methylation

value: Oligodendroglioma


title: 206960640075_R02C01 Methylation


title: Brain, CD3+ SS2 WT E18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E18


title: mouse hindlimb field E9.75 H3K27ac ChIP rep2

description:
PE150 sequencing
mm_HF_E9.75_H3K27ac_naive_overlap.narrowPeak.gz
mm_HF_E9.75_H3K27ac_pooled.signal.bw

value: H3K27ac (Millipore or Cosmo Bio, CMA309)


title: Brain, CD3+ SS2 WT E17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E17


title: 206960640075_R01C01 Methylation


title: Brain, CD3+ SS2 WT F14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F14


title: Brain, CD3+ SS2 WT E19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E19


title: Brain, CD3+ SS2 WT E16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E16


title: 206960640075_R03C01 Methylation


title: 206960640029_R08C01 Methylation


title: 206960640029_R06C01 Methylation


title: Brain, CD3+ SS2 WT E15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E15


title: Brain, CD3+ SS2 WT E13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_E13


title: 206960640029_R04C01 Methylation


title: Brain, CD3+ SS2 WT D6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D6


title: Brain, CD3+ SS2 WT D5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D5


title: 206960640029_R05C01 Methylation


title: Brain, CD3+ SS2 WT F1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_F1


title: Brain, CD3+ SS2 WT D4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D4


title: Brain, CD3+ SS2 WT D7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D7


title: 206960640029_R02C01 Methylation

value: Glioma


title: 206960640029_R01C01 Methylation


title: Brain, CD3+ SS2 WT D23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D23


title: 206648960155_R06C01 Methylation


title: Brain, CD3+ SS2 WT D24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D24


title: 206648960155_R05C01 Methylation


title: 206648960155_R04C01 Methylation


title: 206648960154_R07C01 Methylation


title: Brain, CD3+ SS2 WT D2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D2


title: 206648960155_R02C01 Methylation


title: 206648960155_R01C01 Methylation


title: Brain, CD3+ SS2 WT D20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D20


title: 206648960154_R06C01 Methylation


title: Brain, CD3+ SS2 WT D21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D21


title: 206960640029_R03C01 Methylation


title: 206648960154_R05C01 Methylation


title: Brain, CD3+ SS2 WT D18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D18


title: 206648960154_R04C01 Methylation


title: Brain, CD3+ SS2 WT D16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D16


title: 206648960154_R03C01 Methylation


title: Brain, CD3+ SS2 WT D17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D17


title: 206648960154_R02C01 Methylation


title: Brain, CD3+ SS2 WT D19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D19


title: Brain, CD3+ SS2 WT D14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D14


title: Brain, CD3+ SS2 WT D3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D3


title: Brain, CD3+ SS2 WT D12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D12


title: Brain, CD3+ SS2 WT D13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D13


title: 206648960154_R01C01 Methylation


title: 206648960150_R08C01 Methylation


title: Brain, CD3+ SS2 WT D22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D22


title: 206648960150_R07C01 Methylation


title: Brain, CD3+ SS2 WT D11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D11


title: Brain, CD3+ SS2 WT C9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C9


title: Brain, CD3+ SS2 WT C7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C7


title: 206648960150_R04C01 Methylation


title: 206648960150_R03C01 Methylation

value: Gliosarcoma


title: Brain, CD3+ SS2 WT C6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C6

value: WT


title: Brain, CD3+ SS2 WT C22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C22


title: 206648960150_R02C01 Methylation


title: Brain, CD3+ SS2 WT D1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_D1


title: 206648960150_R05C01 Methylation


title: 206648960150_R01C01 Methylation


title: Brain, CD3+ SS2 WT C21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C21


title: 206648960149_R08C01 Methylation


title: Brain, CD3+ SS2 WT C20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C20


title: 206648960149_R07C01 Methylation


title: 206648960149_R06C01 Methylation


title: 206648960149_R05C01 Methylation


title: Brain, CD3+ SS2 WT C19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C19


title: Brain, CD3+ SS2 WT C17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C17


title: Brain, CD3+ SS2 WT C16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C16


title: 206648960149_R03C01 Methylation


title: 206648960150_R06C01 Methylation


title: 206648960149_R02C01 Methylation


title: Brain, CD3+ SS2 WT C15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C15


title: 206648960149_R01C01 Methylation


title: Brain, CD3+ SS2 WT C14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C14


title: 206648960155_R07C01 Methylation


title: 206648960148_R06C01 Methylation


title: 206648960148_R08C01 Methylation


title: Brain, CD3+ SS2 WT C11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C11


title: 206648960148_R02C01 Methylation


title: Brain, CD3+ SS2 WT C13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C13


title: 206648960148_R05C01 Methylation


title: Brain, CD3+ SS2 WT B7 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B7


title: Brain, CD3+ SS2 WT C12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C12


title: 206648960148_R07C01 Methylation


title: Brain, CD3+ SS2 WT C24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C24


title: Brain, CD3+ SS2 WT B8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B8


title: Brain, CD3+ SS2 WT C10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C10


title: 206648960142_R08C01 Methylation


title: 206648960148_R01C01 Methylation


title: Brain, CD3+ SS2 WT B3 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B3


title: Brain, CD3+ SS2 WT B5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B5


title: 206648960148_R03C01 Methylation


title: Brain, CD3+ SS2 WT B23 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B23


title: Brain, CD3+ SS2 WT B4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B4


title: 206648960142_R05C01 Methylation


title: Brain, CD3+ SS2 WT C18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_C18


title: Brain, CD3+ SS2 WT B21 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B21


title: 206648960142_R06C01 Methylation


title: 206648960149_R04C01 Methylation


title: 206648960142_R04C01 Methylation


title: Brain, CD3+ SS2 WT B9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B9


title: 206648960142_R02C01 Methylation


title: Brain, CD3+ SS2 WT B20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B20


title: Brain, CD3+ SS2 WT B18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B18


title: Brain, CD3+ SS2 WT B2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B2


title: 206648960142_R03C01 Methylation


title: Brain, CD3+ SS2 WT B19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B19


title: Brain, CD3+ SS2 WT B16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B16


title: 206648960136_R08C01 Methylation


title: Brain, CD3+ SS2 WT B22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B22


title: 206648960136_R07C01 Methylation


title: 206648960136_R04C01 Methylation


title: Brain, CD3+ SS2 WT I15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_I15


title: Brain, CD3+ SS2 WT B13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B13


title: 206648960136_R01C01 Methylation


title: Brain, CD3+ SS2 WT B14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B14


title: 206648960136_R05C01 Methylation


title: 206648960136_R03C01 Methylation


title: Brain, CD3+ SS2 WT B10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B10


title: Brain, CD3+ SS2 WT B1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B1


title: 206648960148_R04C01 Methylation


title: Brain, CD3+ SS2 WT A9 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A9


title: 206648960135_R04C01 Methylation


title: 206648960136_R06C01 Methylation


title: 206648960142_R07C01 Methylation


title: 206648960135_R03C01 Methylation


title: Brain, CD3+ SS2 WT A8 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A8


title: 206648960142_R01C01 Methylation


title: Brain, CD3+ SS2 WT A6 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A6


title: Brain, CD3+ SS2 WT B15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B15


title: 206648960134_R08C01 Methylation


title: Brain, CD3+ SS2 WT A4 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A4


title: Brain, CD3+ SS2 WT A5 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A5


title: 206648960135_R02C01 Methylation


title: 206648960134_R05C01 Methylation


title: Brain, CD3+ SS2 WT A22 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A22


title: 206648960134_R04C01 Methylation


title: 206648960134_R03C01 Methylation


title: Brain, CD3+ SS2 WT A18 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A18


title: Brain, CD3+ SS2 WT B11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_B11


title: Brain, CD3+ SS2 WT A20 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A20


title: 206648960134_R06C01 Methylation


title: Brain, CD3+ SS2 WT A17 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A17


title: 206648960134_R01C01 Methylation


title: Brain, CD3+ SS2 WT A19 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A19


title: Brain, CD3+ SS2 WT A2 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A2


title: 206648960135_R06C01 Methylation


title: 206648960134_R02C01 Methylation


title: 206648960134_R07C01 Methylation


title: Brain, CD3+ SS2 WT A16 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A16


title: 206648960133_R08C01 Methylation


title: 206648960133_R06C01 Methylation


title: 206648960133_R07C01 Methylation


title: Brain, CD3+ SS2 WT A13 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A13


title: Brain, CD3+ SS2 WT A15 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A15


title: 206648960133_R05C01 Methylation


title: Brain, CD3+ SS2 WT A14 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A14


title: 206648960133_R04C01 Methylation


title: Brain, CD3+ SS2 WT A11 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A11


title: Brain, CD3+ SS2 WT A24 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A24


title: 206648960133_R01C01 Methylation


title: 206648960122_R06C01 Methylation


title: Brain, CD3+ SS2 KO P8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P8

value: KO


title: Brain, CD3+ SS2 KO P7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P7


title: 206648960122_R03C01 Methylation


title: 206648960133_R02C01 Methylation


title: 206648960133_R03C01 Methylation


title: Brain, CD3+ SS2 WT A1 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A1


title: 206648960122_R04C01 Methylation


title: 206648960122_R07C01 Methylation


title: 206648960122_R02C01 Methylation


title: Brain, CD3+ SS2 WT A10 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A10


title: 206648960122_R01C01 Methylation


title: 206648960122_R05C01 Methylation


title: 206648960116_R08C01 Methylation


title: Brain, CD3+ SS2 KO P4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P4


title: 206648960116_R07C01 Methylation


title: Brain, CD3+ SS2 KO P24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P24


title: Brain, CD3+ SS2 KO P18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P18


title: Brain, CD3+ SS2 KO P22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P22


title: Brain, CD3+ SS2 KO P2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P2


title: Brain, CD3+ SS2 KO P5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P5


title: 206648960116_R04C01 Methylation


title: 206648960116_R02C01 Methylation


title: Brain, CD3+ SS2 KO P20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P20


title: 206648960116_R06C01 Methylation


title: Brain, CD3+ SS2 KO P14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P14


title: Brain, CD3+ SS2 KO P10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P10


title: 206648960115_R07C01 Methylation


title: Brain, CD3+ SS2 KO O6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O6


title: 206648960115_R05C01 Methylation


title: 206648960115_R08C01 Methylation


title: Brain, CD3+ SS2 KO P15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P15


title: 206648960116_R05C01 Methylation


title: Brain, CD3+ SS2 KO P23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P23


title: 206648960116_R03C01 Methylation


title: Brain, CD3+ SS2 KO O9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O9


title: 206648960116_R01C01 Methylation


title: Brain, CD3+ SS2 KO O23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O23


title: Brain, CD3+ SS2 KO O4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O4


title: 206648960115_R06C01 Methylation


title: Brain, CD3+ SS2 KO O22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O22


title: 206648960115_R01C01 Methylation


title: Brain, CD3+ SS2 KO O20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O20


title: 206648960115_R03C01 Methylation


title: 206648960115_R04C01 Methylation


title: Brain, CD3+ SS2 KO O24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O24


title: 206648960115_R02C01 Methylation


title: Brain, CD3+ SS2 KO O18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O18


title: Brain, CD3+ SS2 KO P16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_P16


title: 206648960108_R01C01 Methylation


title: 206648960108_R04C01 Methylation


title: 206648960108_R05C01 Methylation


title: 206648960106_R02C01 Methylation


title: Brain, CD3+ SS2 KO O2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O2


title: 206648960106_R01C01 Methylation


title: Brain, CD3+ SS2 KO O13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O13


title: 206648960062_R06C01 Methylation


title: Brain, CD3+ SS2 KO O15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O15


title: Brain, CD3+ SS2 KO O16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O16


title: Brain, CD3+ SS2 KO O5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O5


title: Brain, CD3+ SS2 KO O14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O14


title: 206648960106_R05C01 Methylation


title: Brain, CD3+ SS2 KO O12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O12


title: 206648960062_R07C01 Methylation


title: Brain, CD3+ SS2 KO N8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N8


title: Brain, CD3+ SS2 KO O17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O17


title: Brain, CD3+ SS2 KO N9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N9


title: Brain, CD3+ SS2 KO O10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O10


title: 206648960062_R03C01 Methylation


title: 206648960062_R05C01 Methylation


title: 206648960061_R04C01 Methylation


title: Brain, CD3+ SS2 KO O19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_O19


title: 206648960062_R04C01 Methylation


title: Brain, CD3+ SS2 KO N23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N23


title: 206648960106_R04C01 Methylation


title: Brain, CD3+ SS2 KO N7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N7


title: 206648960062_R08C01 Methylation


title: Brain, CD3+ SS2 KO N6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N6


title: 206648960062_R02C01 Methylation


title: Brain, CD3+ SS2 KO N5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N5


title: Brain, CD3+ SS2 KO N18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N18


title: Brain, CD3+ SS2 KO N16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N16


title: 206648960062_R01C01 Methylation


title: 206537470105_R03C01 Methylation


title: Brain, CD3+ SS2 KO N3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N3


title: 206648960061_R02C01 Methylation


title: 206648960061_R05C01 Methylation


title: 206648960061_R03C01 Methylation


title: Brain, CD3+ SS2 KO N19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N19


title: Brain, CD3+ SS2 KO N15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N15


title: Brain, CD3+ SS2 KO N20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N20


title: Brain, CD3+ SS2 KO N21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N21


title: 206537470105_R05C01 Methylation


title: Brain, CD3+ SS2 WT A12 mouse 1 scRNAseq

description:
SmartSeq2
45_8_A12


title: 206537470103_R05C01 Methylation


title: Brain, CD3+ SS2 KO N12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N12


title: Brain, CD3+ SS2 KO N13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N13


title: Brain, CD3+ SS2 KO N10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N10


title: Brain, CD3+ SS2 KO N17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N17


title: 206537470105_R04C01 Methylation


title: 206648960061_R01C01 Methylation


title: 206537470103_R06C01 Methylation


title: 206537470105_R02C01 Methylation


title: 206537470103_R04C01 Methylation


title: 206537470105_R01C01 Methylation


title: Brain, CD3+ SS2 KO N1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N1


title: Brain, CD3+ SS2 KO N22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N22


title: Brain, CD3+ SS2 KO N14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N14


title: Brain, CD3+ SS2 KO N11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_N11


title: Brain, CD3+ SS2 KO M8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M8


title: 206537470102_R07C01 Methylation


title: Brain, CD3+ SS2 KO M4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M4


title: 206537470102_R05C01 Methylation


title: Brain, CD3+ SS2 KO M9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M9


title: 206537470103_R02C01 Methylation


title: 206537470102_R08C01 Methylation


title: Brain, CD3+ SS2 KO M24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M24


title: 206537470102_R06C01 Methylation


title: Brain, CD3+ SS2 KO M23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M23


title: 206537470102_R03C01 Methylation


title: 206537470103_R03C01 Methylation


title: 206537470102_R04C01 Methylation


title: 206537470102_R02C01 Methylation


title: Brain, CD3+ SS2 KO M22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M22


title: 206537470101_R08C01 Methylation


title: 206537470102_R01C01 Methylation


title: Brain, CD3+ SS2 KO M20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M20


title: Brain, CD3+ SS2 KO M21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M21


title: 206537470101_R06C01 Methylation


title: 206537470103_R01C01 Methylation


title: Brain, CD3+ SS2 KO M18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M18


title: 206537470101_R05C01 Methylation


title: Brain, CD3+ SS2 KO M16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M16


title: Brain, CD3+ SS2 KO M19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M19


title: 206537470101_R07C01 Methylation


title: Brain, CD3+ SS2 KO M6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M6


title: 206537470101_R04C01 Methylation


title: 206537470101_R02C01 Methylation


title: Brain, CD3+ SS2 KO M17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M17


title: 206537470101_R03C01 Methylation


title: 206537470100_R08C01 Methylation


title: Brain, CD3+ SS2 KO M10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M10


title: 206537470100_R07C01 Methylation


title: 206537470101_R01C01 Methylation


title: Brain, CD3+ SS2 KO M14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M14


title: Brain, CD3+ SS2 KO M11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M11


title: 206537470100_R06C01 Methylation


title: Brain, CD3+ SS2 KO L9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L9


title: Brain, CD3+ SS2 KO L7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L7


title: Brain, CD3+ SS2 KO L6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L6


title: 206537470100_R05C01 Methylation


title: 206537470100_R04C01 Methylation


title: Brain, CD3+ SS2 KO L5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L5


title: 206537470100_R02C01 Methylation


title: Brain, CD3+ SS2 KO L4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L4


title: Brain, CD3+ SS2 KO L23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L23


title: Brain, CD3+ SS2 KO L3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L3


title: Brain, CD3+ SS2 KO L24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L24


title: 206537470100_R01C01 Methylation


title: Brain, CD3+ SS2 KO M13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M13


title: 206537470096_R07C01 Methylation


title: Brain, CD3+ SS2 KO L22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L22


title: 206537470096_R05C01 Methylation


title: Brain, CD3+ SS2 KO M12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_M12


title: 206537470096_R04C01 Methylation


title: Brain, CD3+ SS2 KO L20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L20


title: Brain, CD3+ SS2 KO L21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L21


title: Brain, CD3+ SS2 KO L2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L2


title: 206537470096_R03C01 Methylation


title: 206537470096_R01C01 Methylation


title: Brain, CD3+ SS2 KO L19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L19


title: 206537470096_R02C01 Methylation


title: 206537470095_R05C01 Methylation


title: 206537470095_R06C01 Methylation


title: 206537470095_R07C01 Methylation


title: Brain, CD3+ SS2 KO L18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L18


title: Brain, CD3+ SS2 KO L15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L15


title: Brain, CD3+ SS2 KO L14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L14


title: Brain, CD3+ SS2 KO L16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L16


title: 206537470100_R03C01 Methylation


title: 206537470095_R03C01 Methylation


title: 206537470096_R08C01 Methylation


title: 206537470095_R02C01 Methylation


title: Brain, CD3+ SS2 KO L10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L10


title: 206537470094_R06C01 Methylation


title: Brain, CD3+ SS2 KO K7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K7


title: Brain, CD3+ SS2 KO K8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K8


title: 206537470094_R08C01 Methylation


title: Brain, CD3+ SS2 KO L13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L13


title: 206537470095_R04C01 Methylation


title: Brain, CD3+ SS2 KO L1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L1


title: 206537470094_R07C01 Methylation


title: Brain, CD3+ SS2 KO K4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K4


title: Brain, CD3+ SS2 KO K9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K9


title: Brain, CD3+ SS2 KO K5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K5


title: 206537470093_R06C01 Methylation


title: Brain, CD3+ SS2 KO K3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K3


title: Brain, CD3+ SS2 KO K6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K6


title: 206537470094_R05C01 Methylation


title: Brain, CD3+ SS2 KO K23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K23


title: Brain, CD3+ SS2 KO K20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K20


title: 206537470094_R01C01 Methylation


title: Brain, CD3+ SS2 KO K22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K22


title: 206537470094_R04C01 Methylation


title: Brain, CD3+ SS2 KO K24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K24


title: Brain, CD3+ SS2 KO K21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K21


title: 206537470083_R05C01 Methylation


title: Brain, CD3+ SS2 KO K18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K18


title: 206537470093_R04C01 Methylation


title: 206537470094_R03C01 Methylation


title: Brain, CD3+ SS2 KO K13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K13


title: 206537470093_R03C01 Methylation


title: Brain, CD3+ SS2 KO L12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_L12


title: 206537470093_R05C01 Methylation


title: 206537470095_R01C01 Methylation


title: 206537470093_R02C01 Methylation


title: 206537470093_R01C01 Methylation


title: 206537470083_R02C01 Methylation


title: Brain, CD3+ SS2 KO K2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K2


title: Brain, CD3+ SS2 KO K10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K10


title: 206537470082_R07C01 Methylation


title: Brain, CD3+ SS2 KO K11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K11


title: Brain, CD3+ SS2 KO J9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J9


title: 206537470083_R08C01 Methylation


title: Brain, CD3+ SS2 KO K19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K19


title: 206537470083_R06C01 Methylation


title: Brain, CD3+ SS2 KO K17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K17


title: 206537470083_R04C01 Methylation


title: 206537470083_R01C01 Methylation


title: Brain, CD3+ SS2 KO K12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K12


title: 206537470083_R07C01 Methylation


title: Brain, CD3+ SS2 KO J8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J8


title: 206537470082_R01C01 Methylation


title: Brain, CD3+ SS2 KO K1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K1


title: Brain, CD3+ SS2 KO J6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J6


title: 206537470082_R06C01 Methylation


title: 206537470066_R08C01 Methylation


title: Brain, CD3+ SS2 KO J4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J4


title: Brain, CD3+ SS2 KO J3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J3


title: 206537470066_R07C01 Methylation


title: Brain, CD3+ SS2 KO J24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J24


title: 206537470082_R03C01 Methylation


title: 206537470083_R03C01 Methylation


title: 206537470082_R04C01 Methylation


title: 206537470082_R02C01 Methylation


title: 206537470066_R05C01 Methylation


title: Brain, CD3+ SS2 KO J7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J7


title: Brain, CD3+ SS2 KO K14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_K14


title: Brain, CD3+ SS2 KO J5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J5


title: Brain, CD3+ SS2 KO J19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J19


title: Brain, CD3+ SS2 KO J21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J21


title: 206537470065_R07C01 Methylation


title: Brain, CD3+ SS2 KO J23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J23


title: 206537470065_R04C01 Methylation


title: Brain, CD3+ SS2 KO J10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J10


title: Brain, CD3+ SS2 KO J1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J1


title: 206537470064_R05C01 Methylation


title: Brain, CD3+ SS2 KO J15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J15


title: 206537470066_R02C01 Methylation


title: Brain, CD3+ SS2 KO J14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J14


title: Brain, CD3+ SS2 KO J11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J11


title: Brain, CD3+ SS2 KO J2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J2


title: 206537470066_R04C01 Methylation


title: 206537470066_R06C01 Methylation


title: Brain, CD3+ SS2 KO I9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I9


title: Brain, CD3+ SS2 KO I8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I8


title: 206537470065_R02C01 Methylation


title: 206537470064_R06C01 Methylation


title: 206537470065_R05C01 Methylation


title: 206537470065_R06C01 Methylation


title: 206537470064_R04C01 Methylation


title: 206537470066_R01C01 Methylation


title: 206537470082_R05C01 Methylation


title: Brain, CD3+ SS2 KO J20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J20


title: 206537470063_R08C01 Methylation


title: 206537470065_R03C01 Methylation


title: Brain, CD3+ SS2 KO I3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I3


title: Brain, CD3+ SS2 KO J18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J18


title: 206537470064_R02C01 Methylation


title: Brain, CD3+ SS2 KO I7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I7


title: Brain, CD3+ SS2 KO I6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I6


title: 206537470064_R01C01 Methylation


title: Brain, CD3+ SS2 KO J16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J16


title: 206537470063_R07C01 Methylation


title: Brain, CD3+ SS2 KO I24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I24


title: Brain, CD3+ SS2 KO I4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I4


title: 206537470063_R06C01 Methylation


title: Brain, CD3+ SS2 KO I23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I23


title: 206537470063_R05C01 Methylation


title: Brain, CD3+ SS2 KO I22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I22


title: 206537470063_R04C01 Methylation


title: Brain, CD3+ SS2 KO I20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I20


title: 206537470063_R03C01 Methylation


title: Brain, CD3+ SS2 KO J22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_J22


title: 206537470062_R06C01 Methylation


title: 206537470062_R07C01 Methylation


title: 206537470063_R02C01 Methylation


title: Brain, CD3+ SS2 KO I17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I17


title: Brain, CD3+ SS2 KO I19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I19


title: 206537470062_R03C01 Methylation


title: Brain, CD3+ SS2 KO I18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I18


title: 206537470062_R04C01 Methylation


title: 206537470062_R01C01 Methylation


title: Brain, CD3+ SS2 KO I16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I16


title: 206537470062_R05C01 Methylation


title: Brain, CD3+ SS2 KO I13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I13


title: 206537470061_R08C01 Methylation


title: 206537470061_R07C01 Methylation


title: 206537470061_R05C01 Methylation


title: Brain, CD3+ SS2 KO I11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I11


title: Brain, CD3+ SS2 KO I10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I10


title: Brain, CD3+ SS2 KO I12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I12


title: 206537470061_R04C01 Methylation


title: 206537470061_R06C01 Methylation


title: Brain, CD3+ SS2 KO I21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I21


title: Brain, CD3+ SS2 KO H7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H7


title: 206537470066_R03C01 Methylation


title: Brain, CD3+ SS2 KO H24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H24


title: Brain, CD3+ SS2 KO H3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H3


title: Brain, CD3+ SS2 KO I2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_I2


title: 206537470061_R03C01 Methylation


title: 206537470061_R02C01 Methylation


title: Brain, CD3+ SS2 KO H22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H22


title: 206537470061_R01C01 Methylation


title: Brain, CD3+ SS2 KO H21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H21


title: 206537470059_R07C01 Methylation


title: 206537470059_R06C01 Methylation


title: Brain, CD3+ SS2 KO H19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H19


title: Brain, CD3+ SS2 KO H20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H20


title: Brain, CD3+ SS2 KO H18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H18


title: Brain, CD3+ SS2 KO H17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H17


title: 206537470059_R04C01 Methylation


title: Brain, CD3+ SS2 KO H16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H16


title: 206537470059_R03C01 Methylation


title: Brain, CD3+ SS2 KO H15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H15


title: 206537470058_R05C01 Methylation


title: 206537470059_R02C01 Methylation


title: 206537470058_R04C01 Methylation


title: Brain, CD3+ SS2 KO H13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H13


title: Brain, CD3+ SS2 KO H12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H12


title: 206537470058_R03C01 Methylation


title: Brain, CD3+ SS2 KO H1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_H1


title: 206537470058_R01C01 Methylation


title: Brain, CD3+ SS2 KO G8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G8


title: Brain, CD3+ SS2 KO G7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G7


title: Brain, CD3+ SS2 KO G6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G6


title: Brain, CD3+ SS2 KO G5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G5


title: 206537470001_R02C01 Methylation


title: 206537470001_R04C01 Methylation


title: 206537470001_R01C01 Methylation


title: 206537470001_R05C01 Methylation


title: Brain, CD3+ SS2 KO G4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G4


title: Brain, CD3+ SS2 KO G22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G22


title: Brain, CD3+ SS2 KO G21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G21


title: Brain, CD3+ SS2 KO G24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G24


title: 206537470001_R03C01 Methylation


title: 206530730153_R07C01 Methylation


title: 206537470059_R05C01 Methylation


title: Brain, CD3+ SS2 KO G20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G20


title: Brain, CD3+ SS2 KO G3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G3


title: 206530730153_R05C01 Methylation


title: Brain, CD3+ SS2 KO G19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G19


title: 206530730153_R08C01 Methylation


title: 206537470001_R06C01 Methylation


title: 206530730153_R04C01 Methylation


title: Brain, CD3+ SS2 KO G2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G2


title: Brain, CD3+ SS2 KO G23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G23


title: Brain, CD3+ SS2 KO G17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G17


title: 206530730153_R03C01 Methylation


title: 206530730153_R02C01 Methylation


title: 206530730153_R01C01 Methylation


title: Brain, CD3+ SS2 KO G18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G18


title: 206530730152_R05C01 Methylation


title: 206530730152_R08C01 Methylation


title: Brain, CD3+ SS2 KO G14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G14


title: 206530730152_R04C01 Methylation


title: Brain, CD3+ SS2 KO G15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G15


title: Brain, CD3+ SS2 KO G13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G13


title: 206530730153_R06C01 Methylation


title: Brain, CD3+ SS2 KO G12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G12


title: 206530730152_R03C01 Methylation


title: 206530730152_R02C01 Methylation


title: Brain, CD3+ SS2 KO G11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G11


title: Brain, CD3+ SS2 KO F9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F9


title: Brain, CD3+ SS2 KO G10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G10


title: 206530730151_R08C01 Methylation


title: 206537470065_R01C01 Methylation


title: 206530730151_R05C01 Methylation


title: 206530730151_R06C01 Methylation


title: Brain, CD3+ SS2 KO F5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F5


title: Brain, CD3+ SS2 KO F7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F7


title: Brain, CD3+ SS2 KO F3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F3


title: Brain, CD3+ SS2 KO G16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_G16


title: 206530730151_R01C01 Methylation


title: 206530730151_R04C01 Methylation


title: Brain, CD3+ SS2 KO F19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F19


title: Brain, CD3+ SS2 KO F23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F23


title: 206530730151_R02C01 Methylation


title: 206530730047_R08C01 Methylation


title: 206530730047_R07C01 Methylation


title: 206530730047_R04C01 Methylation


title: 206530730151_R03C01 Methylation


title: Brain, CD3+ SS2 KO F1 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F1


title: 206530730047_R02C01 Methylation


title: 206530730047_R03C01 Methylation


title: 206530730047_R05C01 Methylation


title: 206530730151_R07C01 Methylation


title: 206530730152_R01C01 Methylation


title: Brain, CD3+ SS2 KO F16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F16


title: 206530730047_R01C01 Methylation


title: Brain, CD3+ SS2 KO E6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E6


title: Brain, CD3+ SS2 KO E24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E24


title: 206530730042_R04C01 Methylation


title: Brain, CD3+ SS2 KO E21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E21


title: Brain, CD3+ SS2 KO F21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F21


title: Brain, CD3+ SS2 KO E5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E5


title: Brain, CD3+ SS2 KO F11 mouse 2 scRNAseq

description:
SmartSeq2
44_7_F11


title: 206530730042_R03C01 Methylation


title: Brain, CD3+ SS2 KO E3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E3


title: Brain, CD3+ SS2 KO E4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E4


title: Brain, CD3+ SS2 KO E19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E19


title: 206530730042_R05C01 Methylation


title: 206530730042_R02C01 Methylation


title: Brain, CD3+ SS2 KO E20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E20


title: Brain, CD3+ SS2 KO E17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E17


title: 206530730042_R01C01 Methylation


title: Brain, CD3+ SS2 KO E23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E23


title: 206530730041_R08C01 Methylation


title: 206530730041_R07C01 Methylation


title: 206530730041_R06C01 Methylation


title: Brain, CD3+ SS2 KO E10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E10


title: 206530730041_R05C01 Methylation


title: Brain, CD3+ SS2 KO E12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E12


title: 206530730041_R02C01 Methylation


title: 206530730041_R04C01 Methylation


title: 206530730041_R03C01 Methylation


title: Brain, CD3+ SS2 KO D6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D6


title: 206530730039_R08C01 Methylation


title: 206530730041_R01C01 Methylation


title: Brain, CD3+ SS2 KO D7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D7


title: Brain, CD3+ SS2 KO D8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D8


title: 206530730039_R07C01 Methylation


title: Brain, CD3+ SS2 KO D4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D4


title: Brain, CD3+ SS2 KO D5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D5


title: Brain, CD3+ SS2 KO D3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D3


title: 206530730039_R05C01 Methylation


title: 206530730039_R06C01 Methylation


title: Brain, CD3+ SS2 KO D24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D24


title: Brain, CD3+ SS2 KO E16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E16


title: 206530730039_R04C01 Methylation


title: Brain, CD3+ SS2 KO E13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_E13


title: 206530730039_R03C01 Methylation


title: Brain, CD3+ SS2 KO D23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D23


title: Brain, CD3+ SS2 KO D9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D9


title: 206530730039_R01C01 Methylation


title: Brain, CD3+ SS2 KO D22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D22


title: 206530730039_R02C01 Methylation


title: 206530730037_R08C01 Methylation


title: 206530730037_R07C01 Methylation


title: 206530730037_R06C01 Methylation


title: 206530730037_R05C01 Methylation


title: Brain, CD3+ SS2 KO D17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D17


title: Brain, CD3+ SS2 KO D18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D18


title: 206530730037_R03C01 Methylation


title: Brain, CD3+ SS2 KO D16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D16


title: 206530730037_R04C01 Methylation


title: 206530730037_R02C01 Methylation


title: 206530730037_R01C01 Methylation


title: Brain, CD3+ SS2 KO D10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D10


title: Brain, CD3+ SS2 KO D14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D14


title: Brain, CD3+ SS2 KO C9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C9


title: Brain, CD3+ SS2 KO C8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C8


title: 206530730033_R08C01 Methylation


title: Brain, CD3+ SS2 KO D20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D20


title: 206530730033_R05C01 Methylation


title: Brain, CD3+ SS2 KO C7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C7


title: Brain, CD3+ SS2 KO D21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D21


title: 206530730033_R02C01 Methylation


title: 206530730033_R04C01 Methylation


title: Brain, CD3+ SS2 KO C4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C4


title: Brain, CD3+ SS2 KO C24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C24


title: 206530730033_R01C01 Methylation


title: Brain, CD3+ SS2 KO D19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D19


title: Brain, CD3+ SS2 KO C6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C6


title: 206530730026_R08C01 Methylation


title: Brain, CD3+ SS2 KO C23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C23


title: 206530730026_R07C01 Methylation


title: Brain, CD3+ SS2 KO D13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_D13


title: 206530730026_R06C01 Methylation


title: 206530730026_R04C01 Methylation


title: Brain, CD3+ SS2 KO C20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C20


title: Brain, CD3+ SS2 KO C2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C2


title: 206530730033_R06C01 Methylation


title: 206530730026_R03C01 Methylation


title: 206530730026_R02C01 Methylation


title: Brain, CD3+ SS2 KO C17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C17


title: Brain, CD3+ SS2 KO C19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C19


title: Brain, CD3+ SS2 KO C15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C15


title: Brain, CD3+ SS2 KO C16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C16


title: Brain, CD3+ SS2 KO C13 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C13


title: 206530730026_R01C01 Methylation


title: 206530730022_R07C01 Methylation


title: Brain, CD3+ SS2 KO C10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C10


title: 206530730022_R08C01 Methylation


title: 206530730022_R06C01 Methylation


title: 206530730022_R05C01 Methylation


title: Brain, CD3+ SS2 KO B9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B9


title: Brain, CD3+ SS2 KO B8 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B8


title: 206530730022_R02C01 Methylation


title: Brain, CD3+ SS2 KO C22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_C22


title: 206530730022_R01C01 Methylation


title: Brain, CD3+ SS2 KO B7 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B7


title: 206530730022_R03C01 Methylation


title: Brain, CD3+ SS2 KO B6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B6


title: Brain, CD3+ SS2 KO B5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B5


title: Brain, CD3+ SS2 KO B4 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B4


title: 206530730015_R07C01 Methylation


title: 206530730015_R06C01 Methylation


title: 206530730015_R08C01 Methylation


title: Brain, CD3+ SS2 KO B24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B24


title: Brain, CD3+ SS2 KO B3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B3


title: 206530730015_R04C01 Methylation


title: Brain, CD3+ SS2 KO B23 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B23


title: Brain, CD3+ SS2 KO B21 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B21


title: Brain, CD3+ SS2 KO B22 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B22


title: Brain, CD3+ SS2 KO B20 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B20


title: 206530730010_R08C01 Methylation


title: 206530730010_R07C01 Methylation


title: Brain, CD3+ SS2 KO B19 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B19


title: 206530730010_R05C01 Methylation


title: 206530730010_R04C01 Methylation


title: 206530730010_R03C01 Methylation


title: Brain, CD3+ SS2 KO B16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B16


title: Brain, CD3+ SS2 KO B18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B18


title: Brain, CD3+ SS2 KO B17 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B17


title: Brain, CD3+ SS2 KO B15 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B15


title: 206530730010_R01C01 Methylation


title: 206530730010_R02C01 Methylation


title: 206530730015_R05C01 Methylation


title: Brain, CD3+ SS2 KO B10 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B10


title: 206530730007_R07C01 Methylation


title: Brain, CD3+ SS2 KO B12 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B12


title: 206530730015_R02C01 Methylation


title: 206530730015_R01C01 Methylation


title: 206530730007_R05C01 Methylation


title: 206530730007_R08C01 Methylation


title: Brain, CD3+ SS2 KO A9 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A9


title: Brain, CD3+ SS2 KO A6 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A6


title: 206530730010_R06C01 Methylation


title: Brain, CD3+ SS2 KO A5 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A5


title: 206530730007_R03C01 Methylation


title: Brain, CD3+ SS2 KO B2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B2


title: Brain, CD3+ SS2 KO A3 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A3


title: 206530730007_R01C01 Methylation


title: 206530730007_R04C01 Methylation


title: Brain, CD3+ SS2 KO B14 mouse 2 scRNAseq

description:
SmartSeq2
44_7_B14


title: 206530730006_R08C01 Methylation


title: turtle genital tubercle st16-17 input

description: SE75 sequencing

organism: Trachemys scripta

source_name: genital tubercle


title: 206530730006_R07C01 Methylation


title: Brain, CD3+ SS2 KO A24 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A24


title: 206530730006_R06C01 Methylation


title: Brain, CD3+ SS2 KO A18 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A18


title: Brain, CD3+ SS2 KO A2 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A2


title: 206530730007_R06C01 Methylation


title: turtle genital tubercle st16-17 H3K27ac ChIP rep1

description:
SE75 sequencing
ts_GT_st16-17_H3K27ac_naive_overlap.narrowPeak.gz


title: Brain, CD3+ SS2 KO A16 mouse 2 scRNAseq

description:
SmartSeq2
44_7_A16


title: turtle genital tubercle st16-17 ISL1 ChIP

description:
SE75 sequencing
ts_GT_st16-17_ISL1_qval0.01_4fold.narrowPeak
ts_GT_st16-17_ISL1.bw