title: Paglia_PG-05_1.

extract_protocol:
Paglia_PG-05_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-034_1.

status: Public on Jun 03 2020

type: SRA

city: Gif sur Yvette

first: Véronique

last: BRUNAUD

address: avenue des sciences

country: France

institute: INRAE

library_source: transcriptomic

data_processing:
Genome_build: transcriptome of Ptrichocarpa primaryTranscriptOnly
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

molecule: total RNA

organism: Populus nigra

growth_protocol: Trees were pruned 2 times after the initial planting (in 2005). Planting space was organized in 4 blocks. The harvest date for RNA extraction was 4 years after the last pruning in winter 2011-2012.

extract_protocol:
Loire_VDL-034_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

treatment_protocol: no treatment

tag: population

value: Loire

tag: genotype

tag: age

tag: tissue

value: cambium,xylem


title: Loire_VDL-034_3.

extract_protocol:
Loire_VDL-034_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-023_3.

extract_protocol:
Loire_VDL-023_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-024_3.

extract_protocol:
Loire_VDL-024_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-032_1.

extract_protocol:
Loire_VDL-032_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Paglia_PG-31_1.

extract_protocol:
Paglia_PG-31_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: Paglia


title: Paglia_PG-10_1.

extract_protocol:
Paglia_PG-10_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_1.

extract_protocol:
Loire_VDL-018_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_3.

extract_protocol:
Loire_VDL-018_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-024_1.

extract_protocol:
Loire_VDL-024_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-023_1.

extract_protocol:
Loire_VDL-023_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NL_NL-1171_3.

extract_protocol:
NL_NL-1171_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: NL


title: Loire_VDL-020_3.

extract_protocol:
Loire_VDL-020_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-009_1.

extract_protocol:
Loire_VDL-009_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-050_1.

extract_protocol:
Loire_SPM-050_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-054_1.

extract_protocol:
Loire_SPM-054_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-004_3.

extract_protocol:
Loire_SPM-004_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-033_1.

extract_protocol:
Loire_SPM-033_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-034_1.

extract_protocol:
Loire_GLY-034_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-006_3.

extract_protocol:
Loire_SPM-006_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-020_1.

extract_protocol:
Loire_VDL-020_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-013_1.

extract_protocol:
Loire_VDL-013_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-034_3.

extract_protocol:
Loire_GLY-034_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-026_1.

extract_protocol:
Loire_GLY-026_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-013_1.

extract_protocol:
Loire_GLY-013_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-012_3.

extract_protocol:
Loire_GLY-012_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-009_3.

extract_protocol:
Loire_VDL-009_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-015_1.

extract_protocol:
Loire_GLY-015_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-006_1.

extract_protocol:
Loire_SPM-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-054_3.

extract_protocol:
Loire_SPM-054_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-013_3.

extract_protocol:
Loire_VDL-013_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_SPM-050_3.

extract_protocol:
Loire_SPM-050_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-013_3.

extract_protocol:
Loire_GLY-013_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-012_1.

extract_protocol:
Loire_GLY-012_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-015_3.

extract_protocol:
Loire_GLY-015_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-008_3.

extract_protocol:
Loire_GLY-008_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-009_3.

extract_protocol:
Loire_GLY-009_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-009_1.

extract_protocol:
Loire_GLY-009_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-008_1.

extract_protocol:
Loire_GLY-008_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-003_1.

extract_protocol:
Loire_GLY-003_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-003_3.

extract_protocol:
Loire_GLY-003_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-026_3.

extract_protocol:
Loire_GLY-026_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-002_3.

extract_protocol:
Loire_GLY-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_BSL-030_3.

extract_protocol:
Loire_BSL-030_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_BSL-030_1.

extract_protocol:
Loire_BSL-030_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_BSL-005_3.

extract_protocol:
Loire_BSL-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_BSL-005_1.

extract_protocol:
Loire_BSL-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_GLY-002_1.

extract_protocol:
Loire_GLY-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_99588_1.

extract_protocol:
Loire_99588_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_99588_3.

extract_protocol:
Loire_99588_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92520-6_3.

extract_protocol:
Loire_92520-6_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92520-1_3.

extract_protocol:
Loire_92520-1_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92524-3_3.

extract_protocol:
Loire_92524-3_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92524-2_3.

extract_protocol:
Loire_92524-2_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92524-3_1.

extract_protocol:
Loire_92524-3_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92525-57_3.

extract_protocol:
Loire_92525-57_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92511-3_1.

extract_protocol:
Loire_92511-3_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92524-2_1.

extract_protocol:
Loire_92524-2_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92510-1_1.

extract_protocol:
Loire_92510-1_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92522-2_1.

extract_protocol:
Loire_92522-2_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92520-6_1.

extract_protocol:
Loire_92520-6_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92522-2_3.

extract_protocol:
Loire_92522-2_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-55_1.

extract_protocol:
Kuhkopf_KUH-55_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: Kuhkopf


title: Loire_92520-1_1.

extract_protocol:
Loire_92520-1_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92510-1_3.

extract_protocol:
Loire_92510-1_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-54_1.

extract_protocol:
Kuhkopf_KUH-54_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-56_1.

extract_protocol:
Kuhkopf_KUH-56_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-53_1.

extract_protocol:
Kuhkopf_KUH-53_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-54_3.

extract_protocol:
Kuhkopf_KUH-54_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-52_3.

extract_protocol:
Kuhkopf_KUH-52_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_92525-57_1.

extract_protocol:
Loire_92525-57_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-52_1.

extract_protocol:
Kuhkopf_KUH-52_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-50_3.

extract_protocol:
Kuhkopf_KUH-50_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-51_3.

extract_protocol:
Kuhkopf_KUH-51_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-47_3.

extract_protocol:
Kuhkopf_KUH-47_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-47_1.

extract_protocol:
Kuhkopf_KUH-47_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-50_1.

extract_protocol:
Kuhkopf_KUH-50_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-49_3.

extract_protocol:
Kuhkopf_KUH-49_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-49_1.

extract_protocol:
Kuhkopf_KUH-49_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-42_1.

extract_protocol:
Kuhkopf_KUH-42_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-39_3.

extract_protocol:
Kuhkopf_KUH-39_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-40_1.

extract_protocol:
Kuhkopf_KUH-40_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-55_3.

extract_protocol:
Kuhkopf_KUH-55_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-44_1.

extract_protocol:
Kuhkopf_KUH-44_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-42_3.

extract_protocol:
Kuhkopf_KUH-42_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-39_1.

extract_protocol:
Kuhkopf_KUH-39_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-40_3.

extract_protocol:
Kuhkopf_KUH-40_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-44_3.

extract_protocol:
Kuhkopf_KUH-44_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-36_3.

extract_protocol:
Kuhkopf_KUH-36_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-37_3.

extract_protocol:
Kuhkopf_KUH-37_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-36_1.

extract_protocol:
Kuhkopf_KUH-36_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-25_1.

extract_protocol:
Kuhkopf_KUH-25_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-14_3.

extract_protocol:
Kuhkopf_KUH-14_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-51_1.

extract_protocol:
Kuhkopf_KUH-51_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-14_1.

extract_protocol:
Kuhkopf_KUH-14_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-25_3.

extract_protocol:
Kuhkopf_KUH-25_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-13_1.

extract_protocol:
Kuhkopf_KUH-13_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-045_3.

extract_protocol:
Dranse_DRA-045_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: Dranse


title: Dranse_DRA-044_3.

extract_protocol:
Dranse_DRA-044_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-044_1.

extract_protocol:
Dranse_DRA-044_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-045_1.

extract_protocol:
Dranse_DRA-045_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-041_3.

extract_protocol:
Dranse_DRA-041_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-040_1.

extract_protocol:
Dranse_DRA-040_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_3.

extract_protocol:
Dranse_DRA-038_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-041_1.

extract_protocol:
Dranse_DRA-041_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_1.

extract_protocol:
Dranse_DRA-038_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-032_3.

extract_protocol:
Dranse_DRA-032_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-37_1.

extract_protocol:
Kuhkopf_KUH-37_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-034_3.

extract_protocol:
Dranse_DRA-034_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-031_3.

extract_protocol:
Dranse_DRA-031_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-031_1.

extract_protocol:
Dranse_DRA-031_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-032_1.

extract_protocol:
Dranse_DRA-032_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Kuhkopf_KUH-29_3.

extract_protocol:
Kuhkopf_KUH-29_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-024_3.

extract_protocol:
Dranse_DRA-024_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-023_1.

extract_protocol:
Dranse_DRA-023_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-022_1.

extract_protocol:
Dranse_DRA-022_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-019_3.

extract_protocol:
Dranse_DRA-019_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-034_1.

extract_protocol:
Dranse_DRA-034_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-017_3.

extract_protocol:
Dranse_DRA-017_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-017_1.

extract_protocol:
Dranse_DRA-017_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-013_3.

extract_protocol:
Dranse_DRA-013_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-006_3.

extract_protocol:
Dranse_DRA-006_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-029_3.

extract_protocol:
Dranse_DRA-029_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-006_1.

extract_protocol:
Dranse_DRA-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-040_3.

extract_protocol:
Dranse_DRA-040_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-022_3.

extract_protocol:
Dranse_DRA-022_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-37_3.

extract_protocol:
Basento_BS-37_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: Basento


title: Basento_BS-37_1.

extract_protocol:
Basento_BS-37_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-36_1.

extract_protocol:
Basento_BS-36_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-14_3.

extract_protocol:
Basento_BS-14_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-36_3.

extract_protocol:
Basento_BS-36_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-09_1.

extract_protocol:
Basento_BS-09_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-09_3.

extract_protocol:
Basento_BS-09_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-024_1.

extract_protocol:
Dranse_DRA-024_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-05_1.

extract_protocol:
Basento_BS-05_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_TRB-005_1.

extract_protocol:
Adour_TRB-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: Adour


title: Dranse_DRA-023_3.

extract_protocol:
Dranse_DRA-023_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-017_3.

extract_protocol:
Adour_SSN-017_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_TRB-005_3.

extract_protocol:
Adour_TRB-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-017_1.

extract_protocol:
Adour_SSN-017_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-016_1.

extract_protocol:
Adour_SSN-016_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-015_1.

extract_protocol:
Adour_SSN-015_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-016_3.

extract_protocol:
Adour_SSN-016_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-015_3.

extract_protocol:
Adour_SSN-015_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-011_3.

extract_protocol:
Adour_SSN-011_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-011_1.

extract_protocol:
Adour_SSN-011_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-013_1.

extract_protocol:
Dranse_DRA-013_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-009_3.

extract_protocol:
Adour_SSN-009_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-009_1.

extract_protocol:
Adour_SSN-009_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-014_3.

extract_protocol:
Adour_SSN-014_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-005_3.

extract_protocol:
Adour_SSN-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-005_1.

extract_protocol:
Adour_SSN-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Basento_BS-05_3.

extract_protocol:
Basento_BS-05_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-001_3.

extract_protocol:
Adour_SSN-001_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-001_1.

extract_protocol:
Adour_SSN-001_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-002_3.

extract_protocol:
Adour_SSN-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-013_1.

extract_protocol:
Adour_OLO-013_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-013_3.

extract_protocol:
Adour_OLO-013_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-010_1.

extract_protocol:
Adour_OLO-010_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-010_3.

extract_protocol:
Adour_OLO-010_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-006_1.

extract_protocol:
Adour_OLO-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-003_3.

extract_protocol:
Adour_OLO-003_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-006_3.

extract_protocol:
Adour_OLO-006_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-014_1.

extract_protocol:
Adour_SSN-014_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-004_1.

extract_protocol:
Adour_LRD-004_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-004_3.

extract_protocol:
Adour_LRD-004_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_OLO-003_1.

extract_protocol:
Adour_OLO-003_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-003_3.

extract_protocol:
Adour_LRD-003_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-003_1.

extract_protocol:
Adour_LRD-003_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-002_3.

extract_protocol:
Adour_LRD-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-002_1.

extract_protocol:
Adour_LRD-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-004_3.

extract_protocol:
Adour_SSN-004_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_CTR-009_3.

extract_protocol:
Adour_CTR-009_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_CTR-009_1.

extract_protocol:
Adour_CTR-009_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-001_1.

extract_protocol:
Adour_LRD-001_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_LRD-001_3.

extract_protocol:
Adour_LRD-001_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-004_1.

extract_protocol:
Adour_SSN-004_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-006_1.

extract_protocol:
Adour_SSN-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_CTR-007_3.

extract_protocol:
Adour_CTR-007_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_SSN-002_1.

extract_protocol:
Adour_SSN-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BLR-002_3.

extract_protocol:
Adour_BLR-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BLR-002_1.

extract_protocol:
Adour_BLR-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-009_3.

extract_protocol:
Adour_BDX-009_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-009_1.

extract_protocol:
Adour_BDX-009_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-007_1.

extract_protocol:
Adour_BDX-007_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-007_3.

extract_protocol:
Adour_BDX-007_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-006_1.

extract_protocol:
Adour_BDX-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-005_3.

extract_protocol:
Adour_BDX-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-005_1.

extract_protocol:
Adour_BDX-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_3.

extract_protocol:
Adour_BDX-003_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_1.

extract_protocol:
Adour_BDX-003_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-002_3.

extract_protocol:
Adour_BDX-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-010_3.

extract_protocol:
Adour_AST-010_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-002_1.

extract_protocol:
Adour_BDX-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-008_3.

extract_protocol:
Adour_AST-008_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-008_1.

extract_protocol:
Adour_AST-008_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-007_3.

extract_protocol:
Adour_AST-007_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-007_1.

extract_protocol:
Adour_AST-007_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_CTR-007_1.

extract_protocol:
Adour_CTR-007_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-004_1.

extract_protocol:
Adour_AST-004_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-005_1.

extract_protocol:
Adour_AST-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-002_3.

extract_protocol:
Adour_AST-002_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-005_3.

extract_protocol:
Adour_AST-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-006_1.

extract_protocol:
Adour_AST-006_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-002_1.

extract_protocol:
Adour_AST-002_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-006_3.

extract_protocol:
Adour_AST-006_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: SK137584_1

status: Public on Mar 30 2020

data_processing:
Genome_build: genome of ATh Ensembl release 39 + Col0 mitochondrial genome (BK010421)
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand

organism: Arabidopsis thaliana

growth_protocol: Media: JIFFY single plug; hygrometry: 80% day, 80% night; Temperature: 20°C day 18°C night; Light: 16h day, 8h night

extract_protocol:
SK137584_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: mutant - knock-out, insertional mutagen, T-DNA-AT5G10690

tag: developmental stage

value: rosette


title: SK137584_3

extract_protocol:
SK137584_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: mutant - knock-out,-AT5G10690


title: SK055676_1

extract_protocol:
SK055676_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: mutant - knock-out, insertional mutagen, T-DNA-AT3G50420

value: 25.5 daysday


title: SK055676_2

extract_protocol:
SK055676_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: 25.5 days


title: SK137584_2

extract_protocol:
SK137584_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Adour_BDX-006_3.

extract_protocol:
Adour_BDX-006_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: SK055676_3

extract_protocol:
SK055676_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: PGN_3

extract_protocol:
PGN_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: mutant - knock-out, insertional mutagen, T-DNA-AT1G56570


title: PGN_2

extract_protocol:
PGN_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: PGN_1

extract_protocol:
PGN_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: MEF37_2

extract_protocol:
MEF37_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: mutant - knock-out, insertional mutagen, T-DNA-AT5G08305


title: MEF37_3

extract_protocol:
MEF37_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Adour_AST-010_1.

extract_protocol:
Adour_AST-010_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Col_3

extract_protocol:
Col_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: wild type (wt)


title: Col_2

extract_protocol:
Col_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Col_1

extract_protocol:
Col_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Adour_AST-004_3.

extract_protocol:
Adour_AST-004_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Mito_otp90_2

data_processing:
Genome_build: genome of ATh Ensembl release 39 + Col0 mitochondrial genome (BK010421)
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content: GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand

growth_protocol: LONG DAYS PERCIVAL

extract_protocol:
Mito_otp90_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

treatment_protocol: gene mutation-genetic treatment-gene disruption-otp90

value: otp90 mutant

value: 35 days - vegetative state

value: leaf


title: Total_col_2

extract_protocol:
Total_col_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf

value: wild type (WT)


title: Mito_otp90_3

extract_protocol:
Mito_otp90_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Mito_col_1

extract_protocol:
Mito_col_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Mito_col_3

extract_protocol:
Mito_col_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Total_col_3

extract_protocol:
Total_col_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Total_otp90_2

extract_protocol:
Total_otp90_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Total_col_1

extract_protocol:
Total_col_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Mito_otp90_1

extract_protocol:
Mito_otp90_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Total_otp90_3

extract_protocol:
Total_otp90_3(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Per_3

status: Public on Feb 04 2020

data_processing:
Genome_build: genome of Zea_mays.AGPv4, GFF v4.32
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

organism: Zea mays

growth_protocol: greenhouse/not controled/24°C/19°C (day/night)16-h illumination (100 W.m- 2)

extract_protocol:
Per_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: wild type B73

tag: harvest date

value: pericarp


title: SAL_4

growth_protocol: greenhouse/not controled/24°C/19°C (day/night)/16-h illumination (100 W.m- 2)

extract_protocol:
SAL_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: not specified

value: Scutellar Aleurone Layer


title: MEF37_1

extract_protocol:
MEF37_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: SAL_3

extract_protocol:
SAL_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Per_4

extract_protocol:
Per_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Per_2

extract_protocol:
Per_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Emb_4

data_processing:
Genome_build: genome of Zea_mays.AGPv4,GFF v4.32
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

extract_protocol:
Emb_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: embryo


title: Emb_3

extract_protocol:
Emb_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Per_1

extract_protocol:
Per_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: End_4

extract_protocol:
End_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: endosperm


title: Total_otp90_1

extract_protocol:
Total_otp90_1(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Emb_1

extract_protocol:
Emb_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: End_3

extract_protocol:
End_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: End_1

extract_protocol:
End_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: End_2

data_processing:
Genome_build: genome of Zea_mays.AGPv4, v4.32
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

extract_protocol:
End_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Mito_col_2

extract_protocol:
Mito_col_2(100ug)
rna_selection:ribosomal depletion, single, stranded:yes, Protocol: Truseq-stranded-total-rna-sample-prep-guide-15031048-E.pdf


title: Emb_2

extract_protocol:
Emb_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: EAS_4

extract_protocol:
EAS_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: Endosperm Adjacent to Scutellum


title: SAL_1

extract_protocol:
SAL_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: wild type


title: EAS_2

extract_protocol:
EAS_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: SAL_2

extract_protocol:
SAL_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: EAS_3

extract_protocol:
EAS_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: WT_3

status: Public on Jan 30 2020

data_processing:
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Genome_build: transcriptome of Arabidopsis TAIR10 1 gene model
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

growth_protocol: In vitro

extract_protocol:
WT_3(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: 16day boyes:1.04

value: seedling


title: WT_1

extract_protocol:
WT_1(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 35S-ASCO_3

extract_protocol:
35S-ASCO_3(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: 35S_ASCO - mutant (overexpression,promoter trap-AT1G67105)


title: AS_1

data_processing:
Genome_build: genome of Zea_mays.AGPv4; GFF v4.32
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

extract_protocol:
AS_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: apical scutellum


title: AS_3

extract_protocol:
AS_3(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: AS_4

extract_protocol:
AS_4(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: RNAi-ASCO_1

extract_protocol:
RNAi-ASCO_1(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: RNAi - mutant (knock-down,RNAi,siRNA-AT1G67105)


title: AS_2

data_processing:
Genome_build: genome of Zea_mays.AGPv4,GFF V4.32
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

extract_protocol:
AS_2(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: EAS_1

extract_protocol:
EAS_1(100mg)
rna_selection:selection polyA, paired-end, stranded:no, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: 35S-ASCO_2

extract_protocol:
35S-ASCO_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: RNAi-ASCO_3

extract_protocol:
RNAi-ASCO_3(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_2

extract_protocol:
WT_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: RNAi-ASCO_2

extract_protocol:
RNAi-ASCO_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL2_F288_E_1

status: Public on Dec 14 2019

data_processing:
Genome_build: transcriptome of Zea_mays.AGPv3.22 + 2,322 Transcripts from Hirsch et al. (2014) + specific sequences from both F288 and F271
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,fragment number by gene

growth_protocol: Field scale level

extract_protocol:
NIL2_F288_E_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

tag: allele

value: 55 days

value: internode


title: NIL2_F288_I_1

extract_protocol:
NIL2_F288_I_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL2_F271_I_1

extract_protocol:
NIL2_F271_I_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL2_F271_E_2

extract_protocol:
NIL2_F271_E_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 35S-ASCO_1

extract_protocol:
35S-ASCO_1(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL1_F288_I_1

extract_protocol:
NIL1_F288_I_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL1_F271_I_1

extract_protocol:
NIL1_F271_I_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL1_F271_E_1

extract_protocol:
NIL1_F271_E_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL1_F271_E_2

extract_protocol:
NIL1_F271_E_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: NIL2_F271_E_1

extract_protocol:
NIL2_F271_E_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: tcp14_dry_1

status: Public on Jul 23 2019

data_processing:
Genome_build: transcriptome of TAIR10
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

growth_protocol: Media=soil Temperature=21°C Light=100 microE m2 s-1

extract_protocol:
tcp14_dry_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: tcp14 mutant

value: boyes:3,boyes 2

value: seed

tag: treatment

value: no treatment


title: mpk8_dry_1

extract_protocol:
mpk8_dry_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: mpk8 mutant


title: mpk8_dry_2

extract_protocol:
mpk8_dry_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: tcp14_dry_2

extract_protocol:
tcp14_dry_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: tcp14_dry_3

extract_protocol:
tcp14_dry_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: tcp14_24h_3

extract_protocol:
tcp14_24h_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

treatment_protocol: Name:imbibition in water - imbibition in water ,induction - water,water:time 24hour . Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25°C.

value: Imbibed seeds (dormant) for 24h on filter paper with water in dark at 25C


title: NIL2_F288_E_2

extract_protocol:
NIL2_F288_E_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: BB1674

status: Public on Dec 31 2019

type: RNA

city: Aalborg

first: Hanne

last: Due

state: North Region

address: Sdr skovvej 15

department: Department of Hematology

country: Denmark

institute: Aalborg University Hospital

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: ABC. Treatment: R-CHOP. IPI score: 2.

hyb_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA.

scan_protocol: Gene Chips HG-U133 Plus 2.0 were scanned using the Affymetrix GeneChip scanner 3000 7G. CEL-files generated using AGCC

data_processing: RMA nomalized using R (v.3.3.3), the affy-package from Bioconductor

label: Biotin

organism: Homo sapiens

source_name: Primary diffuse large B-cell lymphoma tissue

label_protocol: Affymetrix GeneChip 3' IVT PLUS Reagent Kit (#P/N 902416)

growth_protocol: not applicable

extract_protocol: Total RNA was extracted using a modified protocol combining Trizol reagent (Invitrogen) and mirVana microRNA isolation kit (Ambion/ThermoFisher Scientific)

treatment_protocol: The tumor sample was after removal snap frozen and stored in OCT at -80ºC. From each OCT block, a small fraction of the sample was removed using a scalpel, washed twice in PBS, and homogenized using the TissueLyser II (Qiagen).

tag: abc/gcb/nc subclass

value: ABC

value: R-CHOP

tag: ipi score


title: BB1681

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: GCB. Treatment: R:CHOP. IPI score: 1.

value: GCB


title: BB1623

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: NC. Treatment: R-CHOP. IPI score:4.

value: NC


title: BB1671

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: ABC. Treamtent: R-CHOP. IPI score: 0.

tag: treamtent


title: WT_dry_2

extract_protocol:
WT_dry_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: wild type


title: mpk8_dry_3

extract_protocol:
mpk8_dry_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: tcp14_24h_1

extract_protocol:
tcp14_24h_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: BB1621


title: tcp14_24h_2

extract_protocol:
tcp14_24h_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: mpk8_24h_2

extract_protocol:
mpk8_24h_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: mpk8_24h_3

extract_protocol:
mpk8_24h_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: BB1676

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: GCB. Treatment: R-CHOP. IPI score: 2.


title: BB1682

description:
Gene expression data from primary DLBCL tissue samples
ABC/GCB/NC subclass: ABC. Treatment: R-CHOP. IPI score: 3.


title: mpk8_24h_1

extract_protocol:
mpk8_24h_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_24h_1

extract_protocol:
WT_24h_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_dry_1

extract_protocol:
WT_dry_1(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_dry_3

extract_protocol:
WT_dry_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_24h_3

extract_protocol:
WT_24h_3(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ticino_SN-7_1

status: Public on Jun 20 2019

data_processing:
Genome_build: transcriptome of Populus trichocarpa
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

growth_protocol: Common garden, bloc 1.

extract_protocol:
Ticino_SN-7_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: cambium,xylem


title: Ticino_SN-2_3

growth_protocol: Common garden, bloc 3.

extract_protocol:
Ticino_SN-2_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: WT_24h_2

extract_protocol:
WT_24h_2(3ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ticino_SN-2_1

extract_protocol:
Ticino_SN-2_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ticino_SN-7_3

extract_protocol:
Ticino_SN-7_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_STR-010_3

extract_protocol:
Rhin_STR-010_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_STR-010_1

extract_protocol:
Rhin_STR-010_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_RHN-028_3

extract_protocol:
Rhin_RHN-028_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_RHN-028_1

extract_protocol:
Rhin_RHN-028_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_1

extract_protocol:
Loire_VDL-018_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_LOE-011_3

extract_protocol:
Loire_LOE-011_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-A26_1

extract_protocol:
Ramieres_1-A26_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_3

extract_protocol:
Adour_BDX-003_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_1

extract_protocol:
Adour_BDX-003_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-045_1

extract_protocol:
Dranse_DRA-045_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_3

extract_protocol:
Loire_VDL-018_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-005_3

extract_protocol:
Adour_AST-005_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_LOE-011_1

extract_protocol:
Loire_LOE-011_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-A26_3

extract_protocol:
Ramieres_1-A26_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-045_3

extract_protocol:
Dranse_DRA-045_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_3

extract_protocol:
Dranse_DRA-038_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_1

extract_protocol:
Dranse_DRA-038_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: yak1_2

status: Public on May 23 2019

growth_protocol: Media=Arabidopsis media (0,3 % sucrose) hygrometry=in vitro culture Temperature=20°C Light=LD 16h

extract_protocol:
yak1_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: yak1 mutant (Col0)

value: whole plant


title: yak1_3

extract_protocol:
yak1_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: yak1lst8-1_1

extract_protocol:
yak1lst8-1_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: yak1 lst8 mutant (Col0)


title: Adour_AST-005_1

extract_protocol:
Adour_AST-005_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: yak1lst8-1_3

extract_protocol:
yak1lst8-1_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-J31_1

extract_protocol:
Ramieres_1-J31_1(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: yak1lst8-1_2

extract_protocol:
yak1lst8-1_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-J31_3

extract_protocol:
Ramieres_1-J31_3(5ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: maktor1g1maktor5g_2

extract_protocol:
maktor1g1maktor5g_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: maktor mutant (Col0)


title: maktor1g1maktor5g_3

extract_protocol:
maktor1g1maktor5g_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: yak1_1

extract_protocol:
yak1_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: maktor1g1_2

extract_protocol:
maktor1g1_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: maktor1g1_1

extract_protocol:
maktor1g1_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: maktor1g1maktor5g_1

extract_protocol:
maktor1g1maktor5g_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: lst8-1_3

extract_protocol:
lst8-1_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: lst8 mutant (Col0)


title: lst8-1_2

extract_protocol:
lst8-1_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Col0_3

extract_protocol:
Col0_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: wild type (Col0)


title: maktor1g1_3

extract_protocol:
maktor1g1_3(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Col0_2

extract_protocol:
Col0_2(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 5days_2

status: Public on Apr 17 2019

data_processing:
Genome_build: transcriptome of TAIR10_OneGeneModel, LncRNA library (IJPB_lncRNA-Alloriented.fa)
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

growth_protocol: Arabidopsis thaliana Col-0 plants were grown in soil, in growth chamber under white fluorescent light, under short-day (8 hours light/16 hours dark, SD) or long-day (16 hours light/8 hours dark, LD) conditions. Temperature in SD was 21°C during the light period and 18°C during the dark, humidity (65%) remained constant. In LD, temperature (21°C) and humidity (70%) remained constant.

extract_protocol:
5days_2(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

tag: time in ld

value: 5 days

tag: ecotype

value: 4 weeks

value: rosette


title: 5days_3

extract_protocol:
5days_3(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 3days_2

extract_protocol:
3days_2(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: 3 days


title: 3days_1

extract_protocol:
3days_1(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 2days_2

extract_protocol:
2days_2(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: 2 days


title: 2days_3

extract_protocol:
2days_3(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 0day_2

extract_protocol:
0day_2(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: 0 day


title: 2days_1

extract_protocol:
2days_1(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 5days_1

extract_protocol:
5days_1(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 0day_3

extract_protocol:
0day_3(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: lst8-1_1

extract_protocol:
lst8-1_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 3days_3

extract_protocol:
3days_3(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Root_Si_3

status: Public on Feb 22 2019

data_processing:
Genome_build: transcriptome of Brassica napus; Genomes A+C; 10 chromosomes; Genoscope; Brassica_napus_v4.annotation_v5.gtf; gene_id; exon
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

organism: Brassica napus

growth_protocol: In a greenhouse, seeds of Brassica napus L. var. “Citizzen” were germinated on perlite over deionized water for 4 days in the dark. Then seedlings were transferred to natural light conditions and supplied with nutrient solution for 10 days containing: NH4NO3 (1mM), K2SO4 (1mM), KH2P04 (0.4mM), K2HPO4 (0.15mM), CaCl2 (3mM), MgSO4 (0.5mM), EDTA-2NaFe (0.2mM), H3BO3 (14µM), MnSO4 (5µM), ZnSO4 (3µM), CuSO4 (0.7µM), (NH4)6Mo7O24 (0.7µM), CoCl2 (0.1µM), NiCl2 (1µM). Just after first leaf emergence (i.e. after 2 weeks), seedlings were transferred for one week into a plastic tank (20L) containing the nutrient solution described above. Natural light was supplied by high pressure sodium lamps (Philips, MASTER GreenPower T400W) with a PAR (Photosynthetically Active Radiations) of 450 µmol photons.m-2.s-1 at canopy height. At the emergence of the fourth leaf, silicon (Si) pretreatment was applied for one week (Fig. 1). For this, plants were separated into two groups: the first (+Si) was supplied with the nutrient solution described above with the addition of 1.7 mM silicon (Si as sodium metasilicate: Na2SiO3·9H2O) and the second (-Si; Control) with the nutrient solution plus NaCl (3.4 mM) to compensate the sodium supplied by sodium metasilicate in the +Si treatment. Nutrient solutions were aerated and renewed every 3 days and their pH was adjusted daily to 5.6 with HCl (or NaOH). After one week of Si treatment, shoot and root were separated and immediately frozen with liquid nitrogen before RNA extraction. Hoagland nutrient solution/20°C (day)/17°C(night)/450 µmol photons.m-2.s-1 at canopy

extract_protocol:
Root_Si_3(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: Si

tag: date

value: planting date=21-03-17, harvest date=28-03-17

value: roots


title: Root_Si_1

extract_protocol:
Root_Si_1(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: wild type


title: 0day_1

extract_protocol:
0day_1(4ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Root_Si_2

extract_protocol:
Root_Si_2(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Root_NoSi_3

extract_protocol:
Root_NoSi_3(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: no Si

value: planting date=12-02-17, harvest date=28-03-17


title: Root_NoSi_2

extract_protocol:
Root_NoSi_2(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Col0_1

extract_protocol:
Col0_1(4mg)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: whole plant


title: Root_NoSi_1

extract_protocol:
Root_NoSi_1(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: MatureLeaf_Si_1

extract_protocol:
MatureLeaf_Si_1(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf

value: aerial


title: MatureLeaf_Si_2

extract_protocol:
MatureLeaf_Si_2(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: MatureLeaf_Si_3

extract_protocol:
MatureLeaf_Si_3(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: MatureLeaf_NoSi_3

extract_protocol:
MatureLeaf_NoSi_3(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: MatureLeaf_NoSi_2

extract_protocol:
MatureLeaf_NoSi_2(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: MatureLeaf_NoSi_1

extract_protocol:
MatureLeaf_NoSi_1(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:TruSeq_RNA_SamplePrep_v2_Guide_15026495_C.pdf


title: Ticino_SN-7_4

status: Public on Oct 23 2018

growth_protocol: Common garden, bloc 4.

extract_protocol:
Ticino_SN-7_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: cambium,xylem


title: Ticino_SN-2_4

extract_protocol:
Ticino_SN-2_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_RHN-028_2

growth_protocol: Common garden, bloc 2.

extract_protocol:
Rhin_RHN-028_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ticino_SN-7_2

extract_protocol:
Ticino_SN-7_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_STR-010_4

extract_protocol:
Rhin_STR-010_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_RHN-028_4

extract_protocol:
Rhin_RHN-028_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-A26_4

extract_protocol:
Ramieres_1-A26_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-J31_4

extract_protocol:
Ramieres_1-J31_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Rhin_STR-010_2

extract_protocol:
Rhin_STR-010_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-J31_2

extract_protocol:
Ramieres_1-J31_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ticino_SN-2_2

extract_protocol:
Ticino_SN-2_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_LOE-011_4

extract_protocol:
Loire_LOE-011_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ramieres_1-A26_2

extract_protocol:
Ramieres_1-A26_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_2

extract_protocol:
Loire_VDL-018_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_VDL-018_4

extract_protocol:
Loire_VDL-018_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-045_4

extract_protocol:
Dranse_DRA-045_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Loire_LOE-011_2

extract_protocol:
Loire_LOE-011_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_4

extract_protocol:
Dranse_DRA-038_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Dranse_DRA-038_2

extract_protocol:
Dranse_DRA-038_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_4

extract_protocol:
Adour_BDX-003_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_BDX-003_2

extract_protocol:
Adour_BDX-003_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-005_4

extract_protocol:
Adour_AST-005_4(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_12_TPD_2

status: Public on Jun 06 2018

data_processing:
Genome_build: transcriptome of Hevea_mRNAContigs_Cirad
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

organism: Hevea brasiliensis

growth_protocol: Media=Soil hygrometry=tropical condition Temperature=tropical condition (25-35°C approx) Light =Natural

extract_protocol:
PB260_S_D2_36_12_TPD_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

tag: disease state

value: Tapping Panel Dryness

tag: clone

value: latex


title: PB260_S_D2_36_12_TPD_1

extract_protocol:
PB260_S_D2_36_12_TPD_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Adour_AST-005_2

extract_protocol:
Adour_AST-005_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_12_TPD_3

extract_protocol:
PB260_S_D2_36_12_TPD_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_12_Healthy_3

extract_protocol:
PB260_S_D2_36_12_Healthy_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: healthy


title: Dranse_DRA-045_2

extract_protocol:
Dranse_DRA-045_2(5ug)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_12_Healthy_2

extract_protocol:
PB260_S_D2_36_12_Healthy_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_12_Healthy_1

extract_protocol:
PB260_S_D2_36_12_Healthy_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB260_S_D2_36_0_Healthy_3

extract_protocol:
PB260_S_D2_36_0_Healthy_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: BB1680

status: Public on Feb 05 2019

first: Julie

middle: Støve

last: Bødker

address: Sdr. Skovvej 15

department: Department of Heamatology

description: Gene expression data from primary diffuse large B-cell lymphoma

scan_protocol: Gene Chips HG-U133 Plus 2.0 were scanned using the Affymetrix GeneChip scanner 3000 7G

data_processing: RMA normalized using R (v3.4.3), and the RMA Pre-processing function from hemaClass (v1.3.2), available at https://github.com/oncoclass/hemaClass.

extract_protocol: Total RNA was extracted using a modified protocol combining Trizol reagent (Invitrogen) and mirVana microRNA isolation kit (Ambion/ThermoFisher Scientific)

tag: abc/gcb/nc class

value: GCB

tag: bags class

value: Centrocyte

tag: probability of being sensitive to vincristine

tag: ipi status

value: R-CHOP


title: PB260_S_D2_36_0_Healthy_2

extract_protocol:
PB260_S_D2_36_0_Healthy_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

tag: genotype

tag: tissue


title: PB260_S_D2_36_0_Healthy_1

extract_protocol:
PB260_S_D2_36_0_Healthy_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

tag: harvest date


title: PB217_T_D1_36_12_TPD_3

extract_protocol:
PB217_T_D1_36_12_TPD_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_1_12_Healthy_3

extract_protocol:
PB217_T_D1_1_12_Healthy_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_36_12_TPD_2

extract_protocol:
PB217_T_D1_36_12_TPD_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_36_0_Healthy_1

extract_protocol:
PB217_T_D1_36_0_Healthy_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_36_0_Healthy_2

extract_protocol:
PB217_T_D1_36_0_Healthy_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_1_12_Healthy_1

extract_protocol:
PB217_T_D1_1_12_Healthy_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_1_0_Healthy_2

extract_protocol:
PB217_T_D1_1_0_Healthy_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_1_0_Healthy_3

extract_protocol:
PB217_T_D1_1_0_Healthy_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: PB217_T_D1_36_12_TPD_1

extract_protocol:
PB217_T_D1_36_12_TPD_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 50pg

status: Public on Feb 13 2018

growth_protocol: Media=greenhouse Temperature=18-22°C Light=16h day, 8h night

extract_protocol:
50pg
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf

tag: developmental stage

value: seed


title: PB217_T_D1_1_0_Healthy_1

extract_protocol:
PB217_T_D1_1_0_Healthy_1()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: 75pg

extract_protocol:
75pg
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf


title: 5ng

extract_protocol:
5ng
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf


title: 25pg

extract_protocol:
25pg
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf


title: 100pg

extract_protocol:
100pg
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf


title: 10pg

extract_protocol:
10pg
rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf


title: mesophyll_col0_1

source_name: seed

extract_protocol: rna_selection:selection polyA, paired-end, stranded:no, Protocol:SMART-Seq_v4_Ultra_Low_Input_RNA_Kit_for_Sequencing_User_Manual_v4.pdf

value: mesophyll


title: mesophyll_col0_4


title: epiderm_col0_4

value: epiderm


title: epiderm_col0_3


title: epiderm_col0_2


title: epiderm_col0_1


title: nuwa_HO_2

status: Public on Jan 22 2018

data_processing:
Mapping and counts of reads by locus gene (tophat2/bowtie2). If PE reads, count only consistent PE reads
Genome_build: TAIR10
Supplementary_files_format_and_content: type:count file (txt); content:gene ID,length of Gene,nb single reads,nb PE reads

growth_protocol: Media=soil     hygrometry=60%  Temperature=18°C/20°C (night/day)       Light=8h/16h (night/day)

extract_protocol: rna_selection:ribosomal depletion, single, stranded:yes, Protocol:truseq-stranded-total-rna-sample-prep-guide-15  031048-E.pdf

value: mutant (nuwa Homozygote)

value: flower bud,rosette,stem


title: nuwa_HE_3

value: mutant (nuwa heterozygote)


title: PB217_T_D1_1_12_Healthy_2

extract_protocol:
PB217_T_D1_1_12_Healthy_2()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: wild type


title: mesophyll_col0_2


title: mesophyll_col0_3


title: nuwa_HO_1


title: nuwa_HE_1


title: dyw2_HO_2


title: nuwa_HE_2


title: dyw2_HO_3

value: mutant (dyw2 Homozygote)


title: nuwa_HO_3

value: mutant (dyw2 Homozygote


title: dyw2_HE_3

value: mutant (dyw2 Heterozygote)


title: dyw2_HE_2


title: WT_26_3

status: Public on Sep 26 2017

source_name: Growth temperature (celsius): 26

growth_protocol: Media  Linsmaier and Skoog 1/2 hygrometry  60% Temperature  21°C/26°C Light  90µE

extract_protocol:
56mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

treatment_protocol: Name:TREATMENT_21 - environmental treatment - temperature,temperature:. Plants were grown at 21°C or 26°C for 10 days before harvest.

value: roots


title: WT_26_2

extract_protocol:
65mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: dyw2_HE_1


title: WT_26_1

extract_protocol:
50mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: dyw2_HO_1


title: WT_21_3

source_name: Growth temperature (celsius): 21

extract_protocol:
55mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Stripped skin_WT E18.5 embryo_n3

status: Public on Jan 12 2018

city: Toulouse

first: Nathalie

last: JONCA

state: France

address: CHU Purpan

institute: INSERM UMR1291 - CNRS UMR 5051 - Université Toulouse III

description: Gene expression data from the stripped skin left 4h on medium culture

hyb_protocol: Following fragmentation, cRNA were hybridized for 16 hr at 45°C on GeneChip Mouse Gene 2.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneArray Scanner 3000 7G and images were analyzed using Command Console software to obtain. Raw data were obtained and corresponded to fluorescent intensity.

data_processing:
The data were analyzed with R Software version 3.2.3 and Bioconductor packages. Raw data were transformed in log2 and Affymetrix Gene microarrays were normalized with the “Robust Multichip Analysis” (RMA) method. After summarization of probes, a unique value for each gene was obtained. Statistical Student t-test were performed to compare KO and WT conditions. To remove false positives, the false discovery rate correction was applied and a p-value adjusted was obtained for each gene. Statistical analysis allowed tagging of genes according to the fold change (FC) and the p-value adjusted.
The FC refers to the differential expression between KO and WT conditions. p-value adjusted ≤ 0,05 was used to filter data. Data are presented in the Data processed index

organism: Mus musculus

source_name: Dorsal skin after tape-stripping from WT embryos

label_protocol: Biotin-labelled cRNA were prepared according to the standard Affymetrix protocol from 9 ug total RNA (UserGuide GeneChip® WT PLUS Reagent Kit, Affymetrix).

extract_protocol: Total RNAs were extracted with RNeasy mini columns protocol (Qiagen).

treatment_protocol: Dorsal skins were stripped using a Dsquame applicator (150g/cm2) with D-Squame disk (22 mm diameter) and left on Dermalife medium at 37°C for 4h. Mouse skin samples were then put in RNA later solution and kept at +4°C up to 4 weeks before RNA purification.

tag: sample type

value: Embryonic stage E18.5, dorsal stripped skin, 4h on culture medium, WT

value: CDSN WT

tag: genetic background


title: Stripped skin_KO E18.5 embryo_n1

source_name: Dorsal skin after tape-stripping from KO Cdsn embryos

value: Embryonic stage E18.5, dorsal stripped skin, 4h on culture medium,  KO Cdsn

value: CDSN KO


title: Ear skin_WT adult mouse_n3

description: Gene expression data from the skin of ears after tamoxifen treatment

data_processing:
The data were analyzed with R Software version 3.1.3 and Bioconductor packages. Raw data were transformed in log2 and Affymetrix Gene microarrays were normalized with the “Robust Multichip Analysis” (RMA) method. After summarization of probes, a unique value for each gene was obtained. Statistical Student t-test were performed to compare KO and WT conditions. To remove false positives, the false discovery rate correction was applied and a p-value adjusted was obtained for each gene. Statistical analysis allowed tagging of genes according to the fold change (FC) and the p-value adjusted.
The FC refers to the differential expression between KO and WT conditions. p-value adjusted ≤ 0,05 was used to filter data. Data are presented in the Data processed index.

source_name: Ear skin from WT adult mouse

treatment_protocol: Mice were treated on ears by daily topical application of 4-hydroxytamoxifen (4-OHTam, 100μg/ear/day) on ears until fifteen continuous days. Ear skin samples were then put in RNA later solution and kept at +4°C up to 4 weeks before RNA purification.

value: Adult mice (7-12 week-old), Tamoxifen treamtent on ears,  WT Cdsn


title: Stripped skin_WT E18.5 embryo_n2


title: Stripped skin_KO E18.5 embryo_n2


title: Stripped skin_WT E18.5 embryo_n1


title: Ear skin_WT adult mouse_n4


title: Ear skin_WT adult mouse_n2


title: Ear skin_Ind_KO adult mouse_n2

source_name: Ear skin from Inducible KO Cdsn adult mouse

value: Adult mice (7-12 week-old), Tamoxifen treamtent on ears,  KO Cdsn


title: Stripped skin_WT E18.5 embryo_n4


title: WT_21_1

extract_protocol:
51mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Stripped skin_KO E18.5 embryo_n4


title: WT_21_2

extract_protocol:
62mg (qiagen-rneasy)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf


title: Ear skin_Ind_KO adult mouse_n4


title: Stripped skin_KO E18.5 embryo_n3


title: Ear skin_Ind_KO adult mouse_n3


title: Ear skin_WT adult mouse_n1


title: Ear skin_Ind_KO adult mouse_n1


title: bileduct_tumor_methylation_CCA_CH_4

status: Public on Jul 03 2017

type: genomic

city: Singapore

first: Jing Quan

last: Lim

address: 30 Hospital Boulevard

department: CMR

country: Singapore

institute: National Cancer Centre Singapore

hyb_protocol: Standard Illumina Protocol - Infinium HD Methylation protocol

scan_protocol: BeadChips were scanned using the iScan system

data_processing: We performed Noob background correction and BMIQ normalization (Minfi and WateRmelon R packages). We removed probes with detection P>0.05 in any sample, probes corresponding to SNPs, and probes on sex chromosomes.

label: Cy5 and Cy3

molecule: genomic DNA

source_name: methylation profile for bile duct tumor sample

extract_protocol: Genomic DNA was extracted using the QIamp DNA mini kit (Qiagen). DNA yield and quality were determined using Picogreen (Invitrogen) and further visually inspected by agarose gel electrophoresis

value: bile duct tumor

tag: country

value: CH


title: bileduct_tumor_methylation_CCA_CH_5

label_protocol: Standard Illumina Protocol - Infinium HD Methylation protocol


title: bileduct_tumor_methylation_CCA_CH_1


title: bileduct_tumor_methylation_CCA_CH_2


title: bileduct_tumor_methylation_CCA_CH_3


title: bileduct_normal_methylation_NBD_SG_2

source_name: methylation profile for bile duct normal sample

value: bile duct normal

value: SG


title: bileduct_normal_methylation_NBD_SG_1


title: PB217_T_D1_36_0_Healthy_3

extract_protocol:
PB217_T_D1_36_0_Healthy_3()
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf

value: healthy

value: latex


title: bileduct_normal_methylation_NBD_SG_4


title: bileduct_tumor_methylation_CCA_CH_8


title: bileduct_normal_methylation_NBD_SG_3


title: bileduct_tumor_methylation_CCA_FR_13

value: FR


title: bileduct_tumor_methylation_CCA_FR_8


title: bileduct_tumor_methylation_CCA_FR_5


title: bileduct_tumor_methylation_CCA_FR_16


title: bileduct_tumor_methylation_CCA_CH_6


title: bileduct_tumor_methylation_CCA_FR_15


title: bileduct_tumor_methylation_CCA_FR_1


title: bileduct_tumor_methylation_CCA_CH_7


title: bileduct_tumor_methylation_CCA_FR_7


title: bileduct_tumor_methylation_CCA_FR_12


title: bileduct_tumor_methylation_CCA_FR_14


title: bileduct_tumor_methylation_CCA_FR_9


title: bileduct_tumor_methylation_CCA_FR_2


title: bileduct_tumor_methylation_CCA_FR_6


title: bileduct_tumor_methylation_CCA_KR_2

value: KR


title: bileduct_tumor_methylation_CCA_FR_4


title: bileduct_tumor_methylation_CCA_FR_11


title: bileduct_tumor_methylation_CCA_FR_3


title: bileduct_tumor_methylation_CCA_FR_10


title: bileduct_tumor_methylation_CCA_RO_31

value: RO


title: bileduct_tumor_methylation_CCA_BR_2

value: BR


title: bileduct_tumor_methylation_CCA_BR_1


title: bileduct_tumor_methylation_CCA_IT_3

value: IT


title: bileduct_tumor_methylation_CCA_RO_45


title: bileduct_tumor_methylation_CCA_RO_23


title: bileduct_tumor_methylation_CCA_RO_6


title: bileduct_tumor_methylation_CCA_RO_29


title: bileduct_tumor_methylation_CCA_KR_1


title: bileduct_tumor_methylation_CCA_IT_2


title: bileduct_tumor_methylation_CCA_SG_54


title: bileduct_tumor_methylation_CCA_RO_25


title: bileduct_tumor_methylation_CCA_IT_4


title: bileduct_tumor_methylation_CCA_SG_13


title: bileduct_tumor_methylation_CCA_TH_12

value: TH


title: bileduct_tumor_methylation_CCA_SG_19


title: bileduct_tumor_methylation_CCA_SG_29


title: bileduct_tumor_methylation_CCA_TH_79


title: bileduct_tumor_methylation_CCA_SG_17


title: bileduct_tumor_methylation_CCA_RO_7


title: bileduct_tumor_methylation_CCA_SG_18


title: bileduct_tumor_methylation_CCA_SG_21


title: bileduct_tumor_methylation_CCA_TH_130


title: bileduct_tumor_methylation_CCA_TH_7


title: bileduct_tumor_methylation_CCA_TH_44


title: bileduct_tumor_methylation_CCA_RO_4


title: bileduct_tumor_methylation_CCA_SG_36


title: bileduct_tumor_methylation_CCA_TH_4


title: bileduct_tumor_methylation_CCA_TH_11