title: D570_001_ADT_CZINY-0704

description:
Library name: D570_001_ADT_CZINY-0704_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

value: fresh

value: current, 60 pack-years

tag: death type

value: brain stem death

tag: cause of_death

value: cerebrovascular/stroke

tag: body mass_index

tag: test results.cmv

tag: raw matrix_feature_keys

tag: enriched cell_type

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PFTP, sample18

status: Public on Jun 06 2025

type: SRA

city: Duluth

first: Peter

last: Schumann

state: MN

address: 6201 Congdon Blvd

country: USA

institute: United States Environmental Protection Agency

library_source: transcriptomic

data_processing:
Sequencing was performed in a 1x100bp single read format using Illumina NovaSeq SP flow cells (Illumina, Inc., San Diego, CA, USA).
The R. subcapitata reference genome (GCA_003203535.1) was indexed using STAR v2.7.10a (Dobin et al., 2012) using the following parameters: genomeSAindexNbases = 11, sjdbOverhang = 99, and sjdbGTFfeatureExon = gene.
The raw, 1x100bp single end FASTQ sequence files were trimmed, quality filtered (Phred score <15), and had UMIs and adapter sequences removed after deduplication using fastp v0.23.2 (Chen 2023, Chen et al., 2018).
Quality reads were aligned and mapped to the indexed reference genome using STAR. The resulting alignment files were sorted by coordinates and indexed by sample using Samtools v1.15.1 (Danecek et al., 2021).
Aligned reads were quantified with respect to gene features using the “featureCounts” program (v2.0.6) of the subread package (Liao et al., 2014). A 1,400 bp extension was added to each read at the 5’ end as most reads aligned at unannotated 3’ untranslated regions (UTR) of the genome and gene features with the largest overlap were counted. The quantified reads were organized into separate (tab-delimited) count matrix files for each chemical treatment group where columns represented samples and rows represented genes.
Assembly: GCA_003203535.1
Supplementary files format and content: count matrices with rows as gene features and columns as samples

molecule: polyA RNA

organism: Raphidocelis subcapitata

source_name: whole body

growth_protocol: reared in Woods Hole MBL media at 24°C with constant light (~250 µmol/m2/s)

extract_protocol:
RNA was extracted from pooled homogenates (Plant/Fungi Total RNA Purification kits, #31900, Norgen Biotek, Ontario, Canada) with a protocol slightly modified from the manufacturer’s instructions.  First, the algae were centrifuged, and the supernatant was aspirated.  Glass beads (0.5 mm) were added to each well and the plate went through five cycles of freezing with liquid nitrogen and bead milling for 2 minutes.  Next, 400 µl of kit Buffer C was added to each well and then the manufacturer’s procedure was followed.
Libraries were prepared using the Lexogen QuantSeq 3’ mRNA-Seq V2 Library Prep Kit with UDI (Unique Dual Index) and QuantSeq UMI (Unique Molecular Identifier) module with PhiX spike-in making up ~5% of the total reads in each lane. The UMI module (https://faqs.lexogen.com/faq/quantseq-umi-module) added a random, 6nt sequence to the start of each read 1 (R1), followed by a constant, 4nt (TATA) spacer. Preparation followed manufacturer’s recommendations. Completed libraries were quality checked and quantified using Qubit dsDNA HS and Agilent 4200 TapeStation HS DNA1000 assays. Libraries were pooled in equimolar amounts and quantified using the Invitrogen Collibri Quantification qPCR kit.

treatment_protocol: Using 96-well plates, two PFAS per exposure were serially diluted in algae media (Woods Hole MBL media) with a Biomek i5 liquid handler to final nominal exposure concentrations of 100, 32, 10, 3.2, 1, 0.3, 0.1, and 0.03 uM with five replicates per concentration of each PFAS.  There were also 8 control replicates (no PFAS) and two concentrations of CuSO4 (0.75 and 1.5 mM) with three replicates each as positive controls.  All PFAS and control replicates were arranged on a 96-well plate in a predetermined systematic layout such that each concentration was distributed to equal numbers of edge and interior wells.  All wells contained 0.33% solvent.  Prior to exposure, the cells per ml of a R. subcapitata culture in exponential growth was adjusted to approximately 5 x 10^6 cells/ml.  Each well of exposure plates was loaded with 800 µl of algal suspension.  All assays were conducted in four replicate, 96-well plates using deep-well plates sealed with optically clear adhesive covers.  Three of the replicate plates were randomly designated for transcriptomic analysis while the fourth plate was used for phenotypic measurements.  Algae were kept in suspension during incubation by shaking using a temperature controlled orbital shaker.

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTP (DTXSID70379295)


title: D570_001_GEX_CZINY-0723

city: Palo Alto

first: Lattice

last: Data Coordination

state: CA

address: 3165 Porter Drive

department: Genetics

institute: Stanford University

description:
Library name: D570_001_GEX_CZINY-0723_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

library_source: transcriptomic single cell

data_processing:
raw_matrix_normalized:False; raw_matrix_value_scale:linear; raw_matrix_background_barcodes_included:False
Assembly: GRCh38, GENCODE32
Supplementary files format and content: h5ad, count matrix

organism: Homo sapiens

extract_protocol:
Tissue was obtained from deceased organ donors at the time of organ acquisition for clinical transplantation through an approved protocol and material transfer agreement via LiveOnNY, the organ procurement organization for the New York metropolitan area and through the Cambridge Biorepository for Translational Medicine. Each tissue was subjected to a tissue-specific protocol to maximize mononuclear cell (MNC) recovery and viability across a diversity of sites. A series of detailed protocols are available on protocols.io (https://dx.doi.org/10.17504/protocols.io.bwrjpd4n, https://dx.doi.org/10.17504/protocols.io.bwr9pd96, https://dx.doi.org/10.17504/protocols.io.bwsapeae, https://dx.doi.org/10.17504/protocols.io.bwq4pdyw, https://dx.doi.org/10.17504/protocols.io.bwq7pdzn, https://dx.doi.org/10.17504/protocols.io.bwr6pd9e, https://dx.doi.org/10.17504/protocols.io.bz4qp8vw). Each individual tissue single cell suspension (500,000 or 1,000,000 cells) was hash tagged to allow pooling of tissue samples. CITE-seq labeling used either a TotalSeq-C cocktail containing 137 protein targets (10x 5’ libraries) or TotalSeq-A cocktail containing 277 protein targets (10x 3’ libraries).
For scRNA-seq experiments, single cells were loaded onto the channels of a Chromium chip (10x Genomics). cDNA synthesis, amplification, and sequencing libraries were generated using either the Single Cell 5′ Reagent (v1 and v2) or 3′ Reagent (v3) Kits. TCRαβ and BCR paired VDJ libraries were prepared from samples made with the 5′ Reagent kit. All libraries were sequenced on either an Illumina NextSeq 500/550 or NovaSeq 6000 instrument.

value: 73 years

tag: dev stage

value: adult stage

value: male

value: European

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

value: positive

tag: test results.blood_sugar

value: 267 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: D570_001_ADT_CZINY-0703

description:
Library name: D570_001_ADT_CZINY-0703_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

library_source: other

molecule: other

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

value: fresh

value: current, 60 pack-years

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTP, sample16

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTP (DTXSID70379295)


title: R. subcapitata, 24 h exposure, PFTP, sample17


title: D570_001_ADT_CZINY-0702

description:
Library name: D570_001_ADT_CZINY-0702_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 73 years

tag: dev stage

value: adult stage

value: male

value: European

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

value: brain stem death

value: cerebrovascular/stroke

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_assays

value: mononuclear cell


title: D570_001_ADT_CZINY-0707

description:
Library name: D570_001_ADT_CZINY-0707_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

value: positive

tag: test results.cmv

value: 267 mg/dL

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, PFTP, sample21

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFTP, sample15


title: D570_001_GEX_CZINY-0714

description:
Library name: D570_001_GEX_CZINY-0714_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 60 pack-years

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTP, sample14

value: whole body

value: Exponential Growth Stage

value: PFTP (DTXSID70379295)


title: D570_001_ADT_CZINY-0699

description:
Library name: D570_001_ADT_CZINY-0699_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 73 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, 4:2FTS, sample3

tag: tissue

tag: developmental stage

tag: treatment


title: D570_001_ADT_CZINY-0711

description:
Library name: D570_001_ADT_CZINY-0711_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

value: brain stem death

value: cerebrovascular/stroke

tag: height

tag: test results.ebv

value: positive

tag: test results.blood_sugar

value: 267 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: mononuclear cell

tag: assay type


title: D570_001_ADT_CZINY-0709

description:
Library name: D570_001_ADT_CZINY-0709_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

value: fresh

value: current, 60 pack-years

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: D570_001_ADT_CZINY-0701

description:
Library name: D570_001_ADT_CZINY-0701_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 73 years

tag: dev stage

value: adult stage

value: male

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: antibodies/tags


title: D570_001_ADT_CZINY-0700

description:
Library name: D570_001_ADT_CZINY-0700_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: European

tag: living at_sample_collection

tag: death type

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type

value: CITE-seq


title: R. subcapitata, 24 h exposure, PFTP, sample11

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTP (DTXSID70379295)


title: R. subcapitata, 24 h exposure, PFTP, sample13


title: D570_001_ADT_CZINY-0698

description:
Library name: D570_001_ADT_CZINY-0698_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

value: brain stem death

tag: cause of_death

value: cerebrovascular/stroke

tag: body mass_index

tag: height

value: positive

tag: test results.cmv

value: 267 mg/dL

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTP, sample12


title: D570_001_ADT_CZINY-0697

description:
Library name: D570_001_ADT_CZINY-0697_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

value: fresh

value: current, 60 pack-years

tag: death type

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: mononuclear cell

tag: antibodies/tags


title: D564_001_GEX_CZINY-0664

description:
Library name: D564_001_GEX_CZINY-0664_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

value: male

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

value: never

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

value: negative

value: 163 mg/dL

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTP, sample10

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTP (DTXSID70379295)


title: D564_001_GEX_CZINY-0663

description:
Library name: D564_001_GEX_CZINY-0663_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

value: brain stem death

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFTP, sample8

tag: tissue


title: D564_001_GEX_CZINY-0662

description:
Library name: D564_001_GEX_CZINY-0662_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: height

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: mononuclear cell

tag: assay type


title: D564_001_GEX_CZINY-0661

description:
Library name: D564_001_GEX_CZINY-0661_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

value: never

tag: death type

value: Cerebrovascular/stroke

tag: test results.ebv

tag: test results.cmv

value: negative

tag: test results.blood_sugar

tag: library protocol


title: R. subcapitata, 24 h exposure, PFTP, sample9

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D564_001_GEX_CZINY-0658

description:
Library name: D564_001_GEX_CZINY-0658_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: height

value: 163 mg/dL

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTP, sample6

value: PFTP (DTXSID70379295)


title: R. subcapitata, 24 h exposure, PFTP, sample7


title: R. subcapitata, 24 h exposure, PFTP, sample5


title: D564_001_GEX_CZINY-0657

description:
Library name: D564_001_GEX_CZINY-0657_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 48 years

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

value: brain stem death

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type


title: R. subcapitata, 24 h exposure, PFTP, sample3

tag: tissue

tag: developmental stage

tag: treatment


title: D564_001_GEX_CZINY-0660

description:
Library name: D564_001_GEX_CZINY-0660_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: height

tag: library protocol

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell


title: D564_001_GEX_CZINY-0659

description:
Library name: D564_001_GEX_CZINY-0659_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: European

tag: living at_sample_collection

value: never

tag: death type

value: Cerebrovascular/stroke

tag: test results.ebv

tag: test results.cmv

value: negative

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFTP, sample4

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D564_001_GEX_CZINY-0654

description:
Library name: D564_001_GEX_CZINY-0654_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: height

value: 163 mg/dL

tag: library protocol

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFHpA, sample20

value: PFHpA (DTXSID1037303)


title: R. subcapitata, 24 h exposure, PFTP, sample1

value: PFTP (DTXSID70379295)


title: D564_001_GEX_CZINY-0653

description:
Library name: D564_001_GEX_CZINY-0653_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 48 years

value: adult stage

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

value: brain stem death

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_assays


title: D564_001_GEX_CZINY-0656

description:
Library name: D564_001_GEX_CZINY-0656_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: male

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

value: never

tag: cause of_death

tag: body mass_index

value: UMI

value: gene symbol, antibody target

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, PFTP, sample2

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D564_001_GEX_CZINY-0655

description:
Library name: D564_001_GEX_CZINY-0655_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

tag: death type

value: Cerebrovascular/stroke

tag: height

tag: test results.ebv

tag: test results.cmv

value: negative

value: 163 mg/dL

tag: library protocol

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: D564_001_GEX_CZINY-0652

description:
Library name: D564_001_GEX_CZINY-0652_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: cause of_death

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFHpA, sample17

tag: developmental stage

tag: treatment

value: PFHpA (DTXSID1037303)


title: D564_001_GEX_CZINY-0651

description:
Library name: D564_001_GEX_CZINY-0651_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

value: never

tag: death type

value: brain stem death

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

tag: library protocol

tag: enriched cell_type


title: D564_001_GEX_CZINY-0649

description:
Library name: D564_001_GEX_CZINY-0649_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: mononuclear cell

tag: assay type


title: D564_001_GEX_CZINY-0650

description:
Library name: D564_001_GEX_CZINY-0650_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

tag: death type

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

value: negative

tag: raw matrix_value_units

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFHpA, sample16

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFHpA, sample15


title: D564_001_ADT_CZINY-0648

description:
Library name: D564_001_ADT_CZINY-0648_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 163 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFHpA, sample14

value: PFHpA (DTXSID1037303)


title: D564_001_ADT_CZINY-0646

description:
Library name: D564_001_ADT_CZINY-0646_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

value: FALSE

value: fresh

value: never

tag: death type

value: brain stem death

tag: body mass_index

tag: height

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: D564_001_ADT_CZINY-0647

description:
Library name: D564_001_ADT_CZINY-0647_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: cause of_death

value: Cerebrovascular/stroke

tag: test results.ebv

tag: test results.cmv

value: negative

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell


title: D564_001_ADT_CZINY-0645

description:
Library name: D564_001_ADT_CZINY-0645_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 48 years

value: adult stage

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

tag: test results.blood_sugar

value: 163 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, PFHpA, sample11

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFHpA (DTXSID1037303)


title: R. subcapitata, 24 h exposure, PFHpA, sample13


title: D564_001_ADT_CZINY-0644

description:
Library name: D564_001_ADT_CZINY-0644_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: male

value: European

tag: source

tag: suspension cell_depletion_factors

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFHpA, sample12


title: R. subcapitata, 24 h exposure, PFHpA, sample19


title: R. subcapitata, 24 h exposure, PFHpA, sample10


title: D564_001_ADT_CZINY-0640

description:
Library name: D564_001_ADT_CZINY-0640_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

tag: death type

value: brain stem death

value: Cerebrovascular/stroke

tag: test results.ebv

value: positive

tag: test results.cmv

value: negative

tag: test results.blood_sugar

tag: library protocol

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFHpA, sample7

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFHpA, sample6

value: Exponential Growth Stage


title: D564_001_ADT_CZINY-0641

description:
Library name: D564_001_ADT_CZINY-0641_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: height

value: 163 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, PFHpA, sample18

value: PFHpA (DTXSID1037303)


title: D564_001_ADT_CZINY-0639

description:
Library name: D564_001_ADT_CZINY-0639_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

value: FALSE

value: fresh

value: never

tag: death type

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_assays

tag: assay type

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFHpA, sample9

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFHpA, sample5


title: D564_001_ADT_CZINY-0642

description:
Library name: D564_001_ADT_CZINY-0642_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

value: brain stem death

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

value: positive

value: negative

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFHpA, sample4

value: whole body

value: Exponential Growth Stage


title: D564_001_ADT_CZINY-0637

description:
Library name: D564_001_ADT_CZINY-0637_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 48 years

value: adult stage

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 163 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: antibodies/tags


title: D564_001_ADT_CZINY-0636

description:
Library name: D564_001_ADT_CZINY-0636_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: male

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: assay type

value: CITE-seq


title: R. subcapitata, 24 h exposure, PFHpA, sample2

tag: developmental stage

tag: treatment

value: PFHpA (DTXSID1037303)


title: R. subcapitata, 24 h exposure, PFHpA, sample3


title: R. subcapitata, 24 h exposure, PFHpA, sample1


title: D564_001_ADT_CZINY-0635

description:
Library name: D564_001_ADT_CZINY-0635_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: living at_sample_collection

tag: death type

value: brain stem death

value: Cerebrovascular/stroke

tag: test results.ebv

value: positive

tag: test results.cmv

value: negative

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: enriched cell_type

value: TotalSeq-C Human Universal Cocktail


title: D564_001_ADT_CZINY-0634

description:
Library name: D564_001_ADT_CZINY-0634_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 48 years

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: test results.blood_sugar

value: 163 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: gene symbol, antibody target

tag: raw matrix_assays

tag: antibodies/tags


title: D564_001_ADT_CZINY-0643

description:
Library name: D564_001_ADT_CZINY-0643_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

value: FALSE

tag: death type

tag: height

tag: test results.ebv

tag: test results.cmv

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: D564_001_ADT_CZINY-0633

description:
Library name: D564_001_ADT_CZINY-0633_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: CITE-seq


title: D543_001_GEX_CZINY-0600

description:
Library name: D543_001_GEX_CZINY-0600_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: raw matrix_cellranger_assay_chemistry

value: current, 1 pack-year

value: brain stem death

tag: cause of_death

value: head trauma

tag: body mass_index

value: positive

value: negative

tag: test results.blood_sugar

value: 185 mg/dL

tag: library protocol

tag: raw matrix_assays

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFHpA, sample8

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFHpA (DTXSID1037303)


title: R. subcapitata, 24 h exposure, DMSO, sample10

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, DMSO, sample11


title: R. subcapitata, 24 h exposure, DMSO, sample12


title: D543_001_GEX_CZINY-0599

description:
Library name: D543_001_GEX_CZINY-0599_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: death type

tag: height

tag: test results.ebv

tag: test results.cmv

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample20

value: PFHxS (DTXSID3037709)


title: D564_001_ADT_CZINY-0638

description:
Library name: D564_001_ADT_CZINY-0638_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 48 years

tag: Sex

tag: ethnicity

value: European

value: fresh

value: never

value: brain stem death

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

value: positive

tag: test results.blood_sugar

value: 163 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D543_001_GEX_CZINY-0598

description:
Library name: D543_001_GEX_CZINY-0598_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 23 years

tag: dev stage

value: adult stage

value: male

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

value: current, 1 pack-year

tag: death type

value: head trauma

tag: height

value: negative

value: 185 mg/dL

tag: raw matrix_assays

value: scRNA-seq


title: D543_001_GEX_CZINY-0596

description:
Library name: D543_001_GEX_CZINY-0596_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: fresh

value: brain stem death

tag: cause of_death

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: D543_001_GEX_CZINY-0595

description:
Library name: D543_001_GEX_CZINY-0595_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 23 years

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: positive

tag: library protocol

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type


title: D543_001_GEX_CZINY-0593

description:
Library name: D543_001_GEX_CZINY-0593_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: height

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFHxS, sample18

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFHxS (DTXSID3037709)


title: R. subcapitata, 24 h exposure, PFHxS, sample16


title: R. subcapitata, 24 h exposure, PFHxS, sample17


title: R. subcapitata, 24 h exposure, PFHxS, sample15


title: D543_001_GEX_CZINY-0592

description:
Library name: D543_001_GEX_CZINY-0592_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: current, 1 pack-year

value: head trauma

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample19


title: D543_001_GEX_CZINY-0594

description:
Library name: D543_001_GEX_CZINY-0594_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

tag: cause of_death

tag: height

value: negative

value: 185 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFHxS, sample13

tag: tissue

tag: developmental stage

tag: treatment


title: D543_001_GEX_CZINY-0591

description:
Library name: D543_001_GEX_CZINY-0591_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 23 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: R. subcapitata, 24 h exposure, PFHxS, sample12

value: whole body

value: Exponential Growth Stage


title: D543_001_GEX_CZINY-0589

description:
Library name: D543_001_GEX_CZINY-0589_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Hispanic or Latin American

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: height

value: positive

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample11

tag: tissue

tag: developmental stage

tag: treatment

value: PFHxS (DTXSID3037709)


title: D543_001_GEX_CZINY-0588

description:
Library name: D543_001_GEX_CZINY-0588_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

value: current, 1 pack-year

value: head trauma

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFHxS, sample10


title: D543_001_GEX_CZINY-0597

description:
Library name: D543_001_GEX_CZINY-0597_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

tag: sample preservation_method

tag: smoking history

tag: death type

value: brain stem death

tag: cause of_death

tag: height

value: negative

value: 185 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFHxS, sample9

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFHxS, sample6

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, PFHxS, sample21


title: R. subcapitata, 24 h exposure, PFHxS, sample14


title: R. subcapitata, 24 h exposure, PFHxS, sample3


title: D543_001_GEX_CZINY-0590

description:
Library name: D543_001_GEX_CZINY-0590_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample5

value: PFHxS (DTXSID3037709)


title: D543_001_ADT_CZINY-0580

description:
Library name: D543_001_ADT_CZINY-0580_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: height

value: positive

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFHxS, sample1

tag: tissue

tag: developmental stage

tag: treatment


title: D543_001_ADT_CZINY-0579

description:
Library name: D543_001_ADT_CZINY-0579_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 23 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: fresh

value: current, 1 pack-year

value: brain stem death

value: head trauma

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

value: negative

tag: test results.blood_sugar

value: 185 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample2

value: whole body

value: Exponential Growth Stage


title: D543_001_ADT_CZINY-0578

description:
Library name: D543_001_ADT_CZINY-0578_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: height

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell


title: D543_001_ADT_CZINY-0582

description:
Library name: D543_001_ADT_CZINY-0582_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: body mass_index

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: CITE 10x 5' v2

value: CITE-seq

tag: antibodies/tags


title: D543_001_GEX_CZINY-0586

description:
Library name: D543_001_GEX_CZINY-0586_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 1 pack-year

value: brain stem death

value: head trauma

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8diol, sample21

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: D543_001_ADT_CZINY-0584

description:
Library name: D543_001_ADT_CZINY-0584_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: negative

value: 185 mg/dL

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: TotalSeq-C Human Universal Cocktail


title: D543_001_ADT_CZINY-0577

description:
Library name: D543_001_ADT_CZINY-0577_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

value: FALSE

tag: sample preservation_method

tag: smoking history

value: positive

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_assays

value: mononuclear cell

tag: assay type

value: CITE-seq

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, FC8diol, sample20

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: D543_001_ADT_CZINY-0581

description:
Library name: D543_001_ADT_CZINY-0581_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: fresh

value: current, 1 pack-year

tag: death type

value: brain stem death

tag: cause of_death

value: head trauma

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: negative

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: D543_001_ADT_CZINY-0576

description:
Library name: D543_001_ADT_CZINY-0576_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: sample preservation_method

tag: smoking history

tag: test results.blood_sugar

value: 185 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFHxS, sample4

tag: tissue

value: whole body

tag: developmental stage

tag: treatment

value: PFHxS (DTXSID3037709)


title: R. subcapitata, 24 h exposure, FC8diol, sample19

value: Exponential Growth Stage

value: FC8diol (DTXSID30396867)


title: D543_001_ADT_CZINY-0575

description:
Library name: D543_001_ADT_CZINY-0575_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_value_units

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags


title: D543_001_GEX_CZINY-0585

description:
Library name: D543_001_GEX_CZINY-0585_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 1 pack-year

value: brain stem death

value: head trauma

value: negative

tag: test results.blood_sugar

value: 185 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFHxS, sample7

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFHxS (DTXSID3037709)


title: R. subcapitata, 24 h exposure, FC8diol, sample18

value: FC8diol (DTXSID30396867)


title: R. subcapitata, 24 h exposure, FC8diol, sample17


title: D543_001_ADT_CZINY-0573

description:
Library name: D543_001_ADT_CZINY-0573_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8diol, sample16


title: D543_001_ADT_CZINY-0572

description:
Library name: D543_001_ADT_CZINY-0572_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 1 pack-year

value: brain stem death

value: head trauma

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

value: CITE-seq


title: D543_001_ADT_CZINY-0570

description:
Library name: D543_001_ADT_CZINY-0570_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: male

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

value: 185 mg/dL


title: D543_001_GEX_CZINY-0587

description:
Library name: D543_001_GEX_CZINY-0587_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

tag: smoking history

value: positive

tag: test results.cmv

tag: raw matrix_value_units

value: UMI

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8diol, sample10

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: D534_001_GEX_CZINY-0534

description:
Library name: D534_001_GEX_CZINY-0534_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

value: European

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: fresh

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: test results.blood_sugar

value: 161 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, FC8diol, sample14


title: R. subcapitata, 24 h exposure, FC8diol, sample12


title: D543_001_ADT_CZINY-0571

description:
Library name: D543_001_ADT_CZINY-0571_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

value: current, 1 pack-year

value: head trauma

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: negative

value: 185 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_value_units

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8diol, sample9

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: R. subcapitata, 24 h exposure, FC8diol, sample15


title: D534_001_GEX_CZINY-0533

description:
Library name: D534_001_GEX_CZINY-0533_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

value: European

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

value: positive

tag: test results.blood_sugar

value: 161 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: D543_001_ADT_CZINY-0569

description:
Library name: D543_001_ADT_CZINY-0569_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

value: current, 1 pack-year

value: head trauma

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: negative

value: 185 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: enriched cell_type

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8diol, sample11

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: D543_001_ADT_CZINY-0583

description:
Library name: D543_001_ADT_CZINY-0583_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

value: brain stem death

tag: cause of_death

value: positive

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, FC8diol, sample8


title: D534_001_GEX_CZINY-0535

description:
Library name: D534_001_GEX_CZINY-0535_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

value: never

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: 161 mg/dL

tag: raw matrix_value_units

tag: enriched cell_type

value: scRNA-seq


title: D534_001_GEX_CZINY-0532

description:
Library name: D534_001_GEX_CZINY-0532_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: mononuclear cell


title: R. subcapitata, 24 h exposure, FC8diol, sample13

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: R. subcapitata, 24 h exposure, FC8diol, sample7


title: D534_001_GEX_CZINY-0531

description:
Library name: D534_001_GEX_CZINY-0531_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: brain stem death

tag: body mass_index

tag: height

value: positive

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, PFHxS, sample8

tag: tissue

value: PFHxS (DTXSID3037709)


title: R. subcapitata, 24 h exposure, FC8diol, sample6


title: D534_001_GEX_CZINY-0530

description:
Library name: D534_001_GEX_CZINY-0530_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, FC8diol, sample5

tag: developmental stage

tag: treatment


title: D534_001_GEX_CZINY-0529

description:
Library name: D534_001_GEX_CZINY-0529_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

value: never

value: anoxia

tag: body mass_index

tag: height

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, FC8diol, sample4

tag: tissue

value: whole body

value: Exponential Growth Stage


title: D534_001_GEX_CZINY-0528

description:
Library name: D534_001_GEX_CZINY-0528_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: death type

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 161 mg/dL

tag: library protocol

tag: raw matrix_value_units

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8diol, sample3

tag: developmental stage

tag: treatment

value: FC8diol (DTXSID30396867)


title: D534_001_GEX_CZINY-0527

description:
Library name: D534_001_GEX_CZINY-0527_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: fresh

tag: smoking history

value: brain stem death

tag: body mass_index

tag: height

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, FC8diol, sample2

tag: tissue


title: D534_001_GEX_CZINY-0526

description:
Library name: D534_001_GEX_CZINY-0526_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq


title: D534_001_GEX_CZINY-0525

description:
Library name: D534_001_GEX_CZINY-0525_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

value: never

tag: body mass_index

tag: height

tag: assay type


title: R. subcapitata, 24 h exposure, DMSO, sample9

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: DMSO (DTXSID2021735)


title: D534_001_GEX_CZINY-0524

description:
Library name: D534_001_GEX_CZINY-0524_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: death type

tag: cause of_death

value: anoxia

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 161 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: enriched cell_type

value: mononuclear cell

value: scRNA-seq


title: D534_001_GEX_CZINY-0521

description:
Library name: D534_001_GEX_CZINY-0521_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: fresh

tag: smoking history

value: brain stem death

tag: body mass_index

tag: height

value: positive

tag: library protocol

tag: raw matrix_value_units

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, DMSO, sample8

tag: tissue

tag: developmental stage

tag: treatment


title: D534_001_GEX_CZINY-0522

description:
Library name: D534_001_GEX_CZINY-0522_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, FC10diol, sample20

value: FC10diol (DTXSID50369896)


title: R. subcapitata, 24 h exposure, FC10diol, sample21

value: whole body


title: R. subcapitata, 24 h exposure, FC10diol, sample19

value: Exponential Growth Stage


title: D534_001_ADT_CZINY-0520

description:
Library name: D534_001_ADT_CZINY-0520_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

value: never

tag: body mass_index

tag: height

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC10diol, sample17

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, DMSO, sample7

value: DMSO (DTXSID2021735)


title: D534_001_ADT_CZINY-0516

description:
Library name: D534_001_ADT_CZINY-0516_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 161 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: mononuclear cell


title: D534_001_ADT_CZINY-0517

description:
Library name: D534_001_ADT_CZINY-0517_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

tag: sample preservation_method

tag: smoking history

tag: body mass_index

tag: height

value: positive

tag: library protocol

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, FC10diol, sample14

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC10diol (DTXSID50369896)


title: R. subcapitata, 24 h exposure, FC10diol, sample18


title: D534_001_ADT_CZINY-0519

description:
Library name: D534_001_ADT_CZINY-0519_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: male

value: European

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: never

tag: death type

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC10diol, sample11


title: D534_001_ADT_CZINY-0515

description:
Library name: D534_001_ADT_CZINY-0515_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

tag: Sex

tag: ethnicity

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: brain stem death

value: anoxia

tag: body mass_index

tag: height

value: 161 mg/dL

tag: library protocol

tag: raw matrix_value_units

tag: raw matrix_assays

tag: enriched cell_type


title: D534_001_ADT_CZINY-0518

description:
Library name: D534_001_ADT_CZINY-0518_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: test results.ebv

value: positive

tag: test results.cmv

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: D534_001_ADT_CZINY-0514

description:
Library name: D534_001_ADT_CZINY-0514_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: antibodies/tags


title: D534_001_ADT_CZINY-0511

description:
Library name: D534_001_ADT_CZINY-0511_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: never

tag: body mass_index

tag: height

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_assays

tag: enriched cell_type

value: CITE-seq


title: R. subcapitata, 24 h exposure, FC10diol, sample10

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC10diol (DTXSID50369896)


title: D534_001_ADT_CZINY-0509

description:
Library name: D534_001_ADT_CZINY-0509_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: test results.ebv

tag: test results.cmv

tag: assay type

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC10diol, sample8

tag: tissue


title: D534_001_ADT_CZINY-0512

description:
Library name: D534_001_ADT_CZINY-0512_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: body mass_index

tag: height

value: positive

tag: test results.blood_sugar

value: 161 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: antibodies/tags


title: D534_001_ADT_CZINY-0508

description:
Library name: D534_001_ADT_CZINY-0508_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: never

tag: death type

tag: cause of_death

value: CITE 10x 5' v2

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, FC10diol, sample7

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC10diol (DTXSID50369896)


title: R. subcapitata, 24 h exposure, FC10diol, sample9


title: R. subcapitata, 24 h exposure, FC10diol, sample13


title: D534_001_ADT_CZINY-0513

description:
Library name: D534_001_ADT_CZINY-0513_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

value: brain stem death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type

value: CITE-seq


title: D534_001_ADT_CZINY-0507

description:
Library name: D534_001_ADT_CZINY-0507_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

value: positive

value: 161 mg/dL

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC10diol, sample6

tag: tissue

tag: developmental stage

tag: treatment


title: D534_001_ADT_CZINY-0506

description:
Library name: D534_001_ADT_CZINY-0506_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: male

value: European

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: never

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: D534_001_ADT_CZINY-0505

description:
Library name: D534_001_ADT_CZINY-0505_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 33 years

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: mononuclear cell

tag: assay type


title: D534_001_ADT_CZINY-0510

description:
Library name: D534_001_ADT_CZINY-0510_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: fresh

value: brain stem death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, FC10diol, sample3

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC10diol (DTXSID50369896)


title: R. subcapitata, 24 h exposure, FC10diol, sample4


title: D533_001_GEX_CZINY-0488

description:
Library name: D533_001_GEX_CZINY-0488_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

value: 75 years

value: adult stage

tag: Sex

tag: ethnicity

value: Asian

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: Cerebrovascular/stroke

value: positive

value: 132 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

tag: enriched cell_type

value: scRNA-seq


title: D533_001_GEX_CZINY-0487

description:
Library name: D533_001_GEX_CZINY-0487_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: dev stage

value: male

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, FC10diol, sample2

value: whole body

tag: developmental stage

tag: treatment


title: D533_001_GEX_CZINY-0486

description:
Library name: D533_001_GEX_CZINY-0486_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: mononuclear cell


title: D533_001_GEX_CZINY-0485

description:
Library name: D533_001_GEX_CZINY-0485_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

value: 75 years

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_feature_keys

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFTrDA, sample21

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D533_001_GEX_CZINY-0484

description:
Library name: D533_001_GEX_CZINY-0484_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: Asian

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: Cerebrovascular/stroke

value: positive

tag: library protocol

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, PFTrDA, sample19

tag: tissue


title: R. subcapitata, 24 h exposure, PFTrDA, sample20


title: D533_001_GEX_CZINY-0483

description:
Library name: D533_001_GEX_CZINY-0483_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 132 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target


title: R. subcapitata, 24 h exposure, PFTrDA, sample18

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, FC10diol, sample16

value: FC10diol (DTXSID50369896)


title: D533_001_GEX_CZINY-0481

description:
Library name: D533_001_GEX_CZINY-0481_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: death type

tag: library protocol

tag: raw matrix_assays

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTrDA, sample17

tag: tissue

value: whole body


title: R. subcapitata, 24 h exposure, FC10diol, sample15


title: D533_001_ADT_CZINY-0472

description:
Library name: D533_001_ADT_CZINY-0472_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

value: fresh

value: never

value: brain stem death

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: snRNA-seq, CITE-seq

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTrDA, sample15

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D533_001_ADT_CZINY-0468

description:
Library name: D533_001_ADT_CZINY-0468_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

value: 75 years

value: adult stage

tag: Sex

tag: ethnicity

value: Asian

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: Cerebrovascular/stroke

value: positive

value: 132 mg/dL

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell


title: D534_001_GEX_CZINY-0536

description:
Library name: D534_001_GEX_CZINY-0536_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

value: male

value: European

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 161 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: scRNA-seq


title: D543_001_ADT_CZINY-0574

description:
Library name: D543_001_ADT_CZINY-0574_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 23 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 1 pack-year

tag: death type

value: brain stem death

value: head trauma

value: negative

value: 185 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: snRNA-seq, CITE-seq

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTrDA, sample14

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D533_001_ADT_CZINY-0471

description:
Library name: D533_001_ADT_CZINY-0471_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

value: 75 years

tag: dev stage

value: adult stage

value: male

value: Asian

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: never

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: 132 mg/dL

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell


title: D533_001_ADT_CZINY-0470

description:
Library name: D533_001_ADT_CZINY-0470_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: D533_001_ADT_CZINY-0469

description:
Library name: D533_001_ADT_CZINY-0469_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

value: 75 years

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTrDA, sample12

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D533_001_ADT_CZINY-0467

description:
Library name: D533_001_ADT_CZINY-0467_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Asian

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: death type

tag: test results.blood_sugar

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, PFTrDA, sample13

tag: tissue


title: R. subcapitata, 24 h exposure, PFTrDA, sample11


title: R. subcapitata, 24 h exposure, FC8diol, sample1

value: FC8diol (DTXSID30396867)