title: D520_001_ADT_CZINY-0212

description:
Library name: D520_001_ADT_CZINY-0212_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 120 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: D520_001_ADT_CZINY-0214

status: Public on Jun 06 2025

type: SRA

city: Palo Alto

first: Lattice

last: Data Coordination

state: CA

address: 3165 Porter Drive

department: Genetics

country: USA

institute: Stanford University

description:
Library name: D520_001_ADT_CZINY-0214_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

library_source: other

data_processing:
raw_matrix_normalized:False; raw_matrix_value_scale:linear; raw_matrix_background_barcodes_included:False
Assembly: GRCh38, GENCODE32
Supplementary files format and content: h5ad, count matrix

molecule: other

organism: Homo sapiens

extract_protocol:
Tissue was obtained from deceased organ donors at the time of organ acquisition for clinical transplantation through an approved protocol and material transfer agreement via LiveOnNY, the organ procurement organization for the New York metropolitan area and through the Cambridge Biorepository for Translational Medicine. Each tissue was subjected to a tissue-specific protocol to maximize mononuclear cell (MNC) recovery and viability across a diversity of sites. A series of detailed protocols are available on protocols.io (https://dx.doi.org/10.17504/protocols.io.bwrjpd4n, https://dx.doi.org/10.17504/protocols.io.bwr9pd96, https://dx.doi.org/10.17504/protocols.io.bwsapeae, https://dx.doi.org/10.17504/protocols.io.bwq4pdyw, https://dx.doi.org/10.17504/protocols.io.bwq7pdzn, https://dx.doi.org/10.17504/protocols.io.bwr6pd9e, https://dx.doi.org/10.17504/protocols.io.bz4qp8vw). Each individual tissue single cell suspension (500,000 or 1,000,000 cells) was hash tagged to allow pooling of tissue samples. CITE-seq labeling used either a TotalSeq-C cocktail containing 137 protein targets (10x 5’ libraries) or TotalSeq-A cocktail containing 277 protein targets (10x 3’ libraries).
For scRNA-seq experiments, single cells were loaded onto the channels of a Chromium chip (10x Genomics). cDNA synthesis, amplification, and sequencing libraries were generated using either the Single Cell 5′ Reagent (v1 and v2) or 3′ Reagent (v3) Kits. TCRαβ and BCR paired VDJ libraries were prepared from samples made with the 5′ Reagent kit. All libraries were sequenced on either an Illumina NextSeq 500/550 or NovaSeq 6000 instrument.

tag: donor id

tag: age

value: 25 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: Middle Eastern/North African

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

value: brain stem death

value: anoxia

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D520_001_ADT_CZINY-0210

description:
Library name: D520_001_ADT_CZINY-0210_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: 120 mg/dL

value: CITE 10x 5' v2

value: UMI


title: D512_001_ADT_CZINY-0160

description:
Library name: D512_001_ADT_CZINY-0160_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 27 years

tag: dev stage

tag: Sex

value: Hispanic or Latin American

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: current, 0.45 pack-years

tag: test results.blood_sugar

value: 211 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: D520_001_ADT_CZINY-0209

description:
Library name: D520_001_ADT_CZINY-0209_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 25 years

value: adult stage

value: female

tag: ethnicity

value: Middle Eastern/North African

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D512_001_ADT_CZINY-0158

description:
Library name: D512_001_ADT_CZINY-0158_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: D512_001_ADT_CZINY-0156

description:
Library name: D512_001_ADT_CZINY-0156_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 27 years

tag: ethnicity

value: Hispanic or Latin American

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: current, 0.45 pack-years

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

value: UMI


title: D512_001_ADT_CZINY-0157

description:
Library name: D512_001_ADT_CZINY-0157_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: 211 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type

tag: antibodies/tags


title: D512_001_ADT_CZINY-0155

description:
Library name: D512_001_ADT_CZINY-0155_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: adult stage

value: female

tag: ethnicity

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv


title: Xenium_control_14days_rep1

status: Public on Jun 07 2025

type: RNA

city: Saint Louis

first: Qiao

last: Xuanyuan

state: MO

address: 600 S Euclid Ave

department: Renal Division/Internal Medicine

institute: Washington University in St. Louis

description: 10X Xenium in situ sequencing

hyb_protocol: Probe hybridization was performed at 50 °C for 16 hrs according to the manufacturer’s protocol. Unhybridized probes were washed away and probes were ligated at 37 °C for 2 hrs. The resulting circularized probes were then amplified by 1 hr at 4 °C and 2 hrs at 37 °C with the amplification reagents provided by 10x Genomics. After washing, the auto-fluorescent signals were quenched and nuclei were stained by the nuclei staining reagents.

scan_protocol: Kidney sections on the Xenium slide were loaded onto the Xenium Analyzer instruments and imaged at Genome Technology Access Center @ McDonnell Genome Institute (GTAC@MGI) of Washington University in St. Louis. Post-Xenium slide processing followed the protocol from 10x Genomics (Demonstrated Protocol CG000160).

data_processing: Cell segmentation was performed using Baysor algorithm (https://github.com/kharchenkolab/Baysor).

label: Xenium Mouse Probe Set

molecule: total RNA

organism: Mus musculus

source_name: Kidney tissue

label_protocol: The capture probe panel consisted of 300 custom-designed genes.

extract_protocol: For each kidney sample, 6 μm sections were mounted onto Xenium slides.

value: Kidney

tag: strain

tag: Sex

value: male

tag: surgery

value: Sham


title: D512_001_ADT_CZINY-0152

description:
Library name: D512_001_ADT_CZINY-0152_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: brain stem death

value: anoxia

value: positive

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: CITE-seq


title: D512_001_ADT_CZINY-0154

description:
Library name: D512_001_ADT_CZINY-0154_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 27 years

tag: ethnicity

value: Hispanic or Latin American

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: current, 0.45 pack-years

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: CITE 10x 5' v2

value: UMI

tag: enriched cell_type

tag: assay type

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D512_001_ADT_CZINY-0153

description:
Library name: D512_001_ADT_CZINY-0153_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

value: female

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

value: 211 mg/dL

tag: library protocol

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: D512_001_ADT_CZINY-0150

description:
Library name: D512_001_ADT_CZINY-0150_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

tag: death type

tag: cause of_death

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D520_001_ADT_CZINY-0215

description:
Library name: D520_001_ADT_CZINY-0215_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 25 years

tag: dev stage

tag: Sex

value: Middle Eastern/North African

value: never

value: brain stem death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 120 mg/dL

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D520_001_ADT_CZINY-0211

description:
Library name: D520_001_ADT_CZINY-0211_lib
CITE-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

value: UMI

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: D512_001_ADT_CZINY-0149

description:
Library name: D512_001_ADT_CZINY-0149_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 27 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: Hispanic or Latin American

value: current, 0.45 pack-years

tag: death type

tag: cause of_death

value: 211 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays


title: D503_001_HTO_CZINY-0088

description:
Library name: D503_001_HTO_CZINY-0088_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 67 years

tag: ethnicity

value: European

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

tag: body mass_index

tag: height

tag: test results.ebv

value: 198 mg/dL

value: HTO 10x 3' v3 TSA

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type

tag: antibodies/tags


title: D503_001_HTO_CZINY-0086

description:
Library name: D503_001_HTO_CZINY-0086_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: never

value: brain stem death

value: anoxia

value: positive

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: UMI

value: CITE-seq


title: D503_001_HTO_CZINY-0084

description:
Library name: D503_001_HTO_CZINY-0084_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: adult stage

value: female

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

tag: cause of_death

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D503_001_HTO_CZINY-0081

description:
Library name: D503_001_HTO_CZINY-0081_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

tag: Sex

tag: body mass_index

tag: height

tag: test results.ebv

value: gene symbol, antibody target

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D512_001_ADT_CZINY-0148

description:
Library name: D512_001_ADT_CZINY-0148_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 27 years

tag: ethnicity

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: current, 0.45 pack-years

tag: test results.cmv

tag: test results.blood_sugar

value: 211 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: TotalSeq-C Human Universal Cocktail


title: D512_001_ADT_CZINY-0145

description:
Library name: D512_001_ADT_CZINY-0145_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: FALSE

value: fresh

tag: death type

tag: cause of_death

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: D503_001_HTO_CZINY-0072

description:
Library name: D503_001_HTO_CZINY-0072_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: never

value: brain stem death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 198 mg/dL

value: HTO 10x 3' v3 TSA

value: UMI

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D503_001_HTO_CZINY-0085

description:
Library name: D503_001_HTO_CZINY-0085_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: LiveOnNY

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: gene symbol, antibody target

value: CITE-seq


title: D503_001_HTO_CZINY-0087

description:
Library name: D503_001_HTO_CZINY-0087_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

tag: death type

tag: cause of_death

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D512_001_ADT_CZINY-0146

description:
Library name: D512_001_ADT_CZINY-0146_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 27 years

tag: dev stage

tag: Sex

value: Hispanic or Latin American

value: current, 0.45 pack-years

tag: body mass_index

tag: height

tag: test results.ebv

value: 211 mg/dL

value: CITE 10x 5' v2

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D503_001_HTO_CZINY-0082

description:
Library name: D503_001_HTO_CZINY-0082_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: never

value: brain stem death

value: anoxia

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: 198 mg/dL

tag: library protocol

value: HTO 10x 3' v3 TSA

value: UMI


title: D503_001_HTO_CZINY-0083

description:
Library name: D503_001_HTO_CZINY-0083_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: LiveOnNY

value: FALSE

value: fresh

tag: death type

tag: cause of_death

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: CITE-seq


title: D503_001_HTO_CZINY-0070

description:
Library name: D503_001_HTO_CZINY-0070_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: body mass_index

tag: height

tag: test results.ebv

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type

tag: antibodies/tags


title: D512_001_ADT_CZINY-0159

description:
Library name: D512_001_ADT_CZINY-0159_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 27 years

tag: dev stage

tag: Sex

value: Hispanic or Latin American

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: current, 0.45 pack-years

tag: test results.cmv

tag: test results.blood_sugar

value: 211 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: TotalSeq-C Human Universal Cocktail


title: D512_001_ADT_CZINY-0151

description:
Library name: D512_001_ADT_CZINY-0151_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D503_001_HTO_CZINY-0068

description:
Library name: D503_001_HTO_CZINY-0068_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: European

value: LiveOnNY

value: never

tag: body mass_index

tag: height

tag: test results.ebv

value: 198 mg/dL

value: HTO 10x 3' v3 TSA

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D503_001_HTO_CZINY-0066

description:
Library name: D503_001_HTO_CZINY-0066_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq


title: D503_001_HTO_CZINY-0069

description:
Library name: D503_001_HTO_CZINY-0069_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D503_001_ADT_CZINY-0096

description:
Library name: D503_001_ADT_CZINY-0096_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: CITE 10x 3' v3 TSA

value: UMI

tag: enriched cell_type

tag: assay type

tag: antibodies/tags

value: TotalSeq-A Human Universal Cocktail


title: D503_001_HTO_CZINY-0065

description:
Library name: D503_001_HTO_CZINY-0065_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: European

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol


title: D503_001_ADT_CZINY-0095

description:
Library name: D503_001_ADT_CZINY-0095_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: never

tag: death type

tag: cause of_death

value: 198 mg/dL

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D503_001_ADT_CZINY-0093

description:
Library name: D503_001_ADT_CZINY-0093_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: FALSE

value: fresh

tag: body mass_index

tag: height

tag: test results.ebv

value: gene symbol, antibody target

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D503_001_ADT_CZINY-0092

description:
Library name: D503_001_ADT_CZINY-0092_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq


title: D512_001_ADT_CZINY-0147

description:
Library name: D512_001_ADT_CZINY-0147_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 27 years

tag: dev stage

tag: Sex

value: Hispanic or Latin American

value: current, 0.45 pack-years

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

value: positive

value: 211 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: TotalSeq-C Human Universal Cocktail


title: D503_001_ADT_CZINY-0091

description:
Library name: D503_001_ADT_CZINY-0091_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 67 years

value: adult stage

value: female

tag: ethnicity

value: European

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: never

tag: body mass_index

tag: height

tag: test results.ebv

value: CITE 10x 3' v3 TSA

value: UMI

tag: enriched cell_type

tag: assay type

tag: antibodies/tags

value: TotalSeq-A Human Universal Cocktail


title: D503_001_ADT_CZINY-0090

description:
Library name: D503_001_ADT_CZINY-0090_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

value: 198 mg/dL

tag: library protocol

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq


title: D503_001_ADT_CZINY-0077

description:
Library name: D503_001_ADT_CZINY-0077_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D503_001_ADT_CZINY-0089

description:
Library name: D503_001_ADT_CZINY-0089_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

tag: body mass_index

tag: height

tag: test results.ebv

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D503_001_HTO_CZINY-0071

description:
Library name: D503_001_HTO_CZINY-0071_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

value: European

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: never

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: HTO 10x 3' v3 TSA


title: D503_001_ADT_CZINY-0079

description:
Library name: D503_001_ADT_CZINY-0079_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: FALSE

tag: death type

tag: cause of_death

value: CITE 10x 3' v3 TSA

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: TotalSeq-A Human Universal Cocktail


title: D503_001_ADT_CZINY-0078

description:
Library name: D503_001_ADT_CZINY-0078_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: fresh

tag: body mass_index

tag: height

tag: test results.ebv

value: 198 mg/dL

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: D503_001_HTO_CZINY-0067

description:
Library name: D503_001_HTO_CZINY-0067_lib
hashtag of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: brain stem death

value: anoxia

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: mononuclear cell

value: CITE-seq


title: D503_001_ADT_CZINY-0076

description:
Library name: D503_001_ADT_CZINY-0076_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 67 years

value: adult stage

value: female

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

tag: cause of_death

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: Molar_P11_Het_replicate5

city: Bethesda

first: Olivier

last: Duverger

state: MD

address: 30 Convent Drive - Bldg 30 - Room 202

institute: National Institute of Dental and Craniofacial Research

description: Library name: P11_Het_2-3

library_source: transcriptomic

data_processing:
Basecalls performed using Illumina’s RTA  2.0.12
Sequenced reads were mapped to a custom GRCm38.vM23 mouse genome that was modified to include common mouse transgenes, using STAR v2.7.3a in  single-pass mode with the --quantMode GeneCounts parameter.
Gene counts were generated with STAR v2.7.3a built-in counting option --quantMode GeneCounts against a GRCm38.vM23 genome annotation GTF which included common mouse transgenes.
A expression matrix was assembled using R. Genes with less than 5 reads in at least one of the samples were filtered out before differential gene expression analysis.
Differential expression was performed using the DESeq2, EdgeR and Limma-Voom R packages.
Assembly: GRCm38.vM23
Supplementary files format and content: Raw gene counts in tab-delimited txt format.
Supplementary files format and content: Filtered raw gene counts in tab-delimited txt format, after removal of genes with less that 5 reads in at least 1 sample.
Supplementary files format and content: TMM-normalized annotated gene expression matrix in counts per million reads units, tab-delimited txt format.

source_name: First molar at P11

extract_protocol:
Total RNA was isolated using TriPure™ Isolation Reagents (Sigma-Aldrich) followed by PureLink™ RNA Mini Kit (Thermo Fisher Scientific).
Library preparation was performed according to the manufacturer’s instructions for the Illumina Nextera XT unstranded library kit. The libraries were then pooled and sequenced on tow separate runs on a NextSeq 2000 sequencer (Illumina) on 100bp paired-end  mode.

value: First molar at P11

tag: cell type

value: Dental tissue

tag: genotype

value: Het

tag: treatment

value: Postnatal day 11

tag: batch


title: Molar_P11_Het_replicate4

description: Library name: P11_Het_2-2


title: Molar_P11_WT_replicate5

description: Library name: P11_WT_2-4

value: WT


title: Molar_P11_WT_replicate4

description: Library name: P11_WT_2-1


title: D503_001_ADT_CZINY-0073

description:
Library name: D503_001_ADT_CZINY-0073_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: European

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: CITE 10x 3' v3 TSA

value: UMI

tag: enriched cell_type

tag: assay type

tag: antibodies/tags

value: TotalSeq-A Human Universal Cocktail


title: D503_001_ADT_CZINY-0075

description:
Library name: D503_001_ADT_CZINY-0075_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 67 years

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: test results.blood_sugar

value: 198 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq


title: D503_001_ADT_CZINY-0094

description:
Library name: D503_001_ADT_CZINY-0094_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

value: female

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: body mass_index

tag: height

tag: test results.ebv

value: positive


title: Molar_P11_WT_replicate3

description: Library name: P11_WT_1-4

tag: tissue

value: First molar at P11

tag: cell type

value: Dental tissue

tag: genotype

value: WT

tag: treatment

value: Postnatal day 11

tag: batch


title: D503_001_ADT_CZINY-0074

description:
Library name: D503_001_ADT_CZINY-0074_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: ethnicity

value: European

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

value: never

tag: death type

tag: cause of_death

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 3' v3 TSA

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type

tag: antibodies/tags


title: NPC Control 3

city: L'Hospitalet de Llobregat

first: Mireya

last: PLASS

state: Barcelona

address: Avinguda de la Granvia de l’Hospitalet, 199

department: P-CMRC

country: Spain

institute: IDIBELL

description: Drop-seq

library_source: transcriptomic single cell

data_processing:
The demultiplexing, barcoded processing, gene counting and aggregation were made using the Drop-seq tools v2.5.1
Assembly: hg38
Supplementary files format and content: Tab-separated values files and matrix files

source_name: iPSC reprogrammed from skin fibroblast

growth_protocol: iPSCs were maintain in feeder-free condition with supplemented mTeSR medium.  NPCs were achieved by neural induction of iPSC during 10 days by dual SMAD inhibition pathway. Then, induced cells were differentiated up to day 25 were most of the cells are NPCs.

extract_protocol:
iPSC and NPCs were dissociated into a single-cell suspension. Then, cells were cryopreserved with 10% DMSO. Before single-cell ecanpsulation, cells were thawed, filtered and counted.
3' end biased RNAs captured by oligo(dT) beads were retrotranscribed for cDNA library preparation. Nextera XT DNA Library Prep Kit was ussed for tagmentation, tagging and amplification of the library.

tag: tissue

value: iPSC reprogrammed from skin fibroblast

tag: cell line

tag: age

value: age of donor:72 years old

tag: cell type

value: NPCs


title: Molar_P11_WT_replicate1

description: Library name: P11_WT_1-1

tag: genotype

tag: treatment

tag: batch


title: Molar_P11_Het_replicate2

description: Library name: P11_Het_1-5

value: Het


title: Molar_P11_Het_replicate3

description: Library name: P11_Het_1-6


title: cisplatin rep3

city: Baotou

first: Jie

last: Cheng

address: Baotou Medical College

country: China

institute: Baotou Medical College

data_processing:
fastp (version 0.23.4) was used for quality control
sequence reads were aligned to the rat genome version mRatBN7.2 with HISAT2 software (v2.0.5)
StringTie (v1.3.3b) was used for novel transcripts predictio
FeatureCounts v1.5.0-p3 was used for count the reads numbers mapped to each gene
Assembly: mRatBN7.2
Supplementary files format and content: tab-delimited text file includes raw counts for each Sample

organism: Rattus norvegicus

extract_protocol:
RNA was extracted using  TRIzol reagent (Invitrogen, USA)
Libraries were prepared using NEBNext UltraTM RNA Library Prep Kit for Illumina (NEB, USA)

value: Rat pheochromocytoma cells

value: cisplatin


title: Molar_P5_Het_replicate6

description: Library name: P5_Het_5-2

value: First molar at P11


title: D503_001_ADT_CZINY-0080

description:
Library name: D503_001_ADT_CZINY-0080_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

value: 67 years

tag: dev stage

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 198 mg/dL

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq

value: TotalSeq-A Human Universal Cocktail


title: Molar_P11_Het_replicate1

description: Library name: P11_Het_1-2

tag: tissue

tag: cell type

value: Dental tissue

tag: genotype

tag: treatment

value: Postnatal day 11


title: Molar_P11_WT_replicate2

description: Library name: P11_WT_1-3

value: WT

tag: batch


title: Molar_P5_Het_replicate3

description: Library name: P5_Het_4-2

source_name: First molar at P5

value: First molar at P5

value: Het

value: Postnatal day 5


title: Molar_P5_Het_replicate5

description: Library name: P5_Het_5-1


title: iPSC Control 3

description: Drop-seq

value: iPSC reprogrammed from skin fibroblast

tag: cell line

tag: age

value: age of donor:72 years old

value: iPSC


title: Molar_P5_Het_replicate1

description: Library name: P5_Het_3-1


title: Molar_P5_Het_replicate2

description: Library name: P5_Het_3-6


title: Molar_P5_WT_replicate6

description: Library name: P5_WT_4-6


title: Molar_P5_WT_replicate5

description: Library name: P5_WT_4-5


title: Molar_P5_WT_replicate4

description: Library name: P5_WT_4-4


title: Molar_P5_WT_replicate2

description: Library name: P5_WT_3-5


title: Molar_P5_Het_replicate4

description: Library name: P5_Het_4-3


title: whole D. magna, DMSO, sample47

city: Duluth

first: Peter

last: Schumann

state: MN

address: 6201 Congdon Blvd

institute: United States Environmental Protection Agency

description:
XtraC_C9C10_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt

data_processing:
*library strategy: TempO-Seq
Sample-specific TempO-Seq libraries were pooled together and sequenced on an Illumina sequencer (NextSeq 500), 2 × 50 bp, single-end reads, NovaSeq X 10B reagent kits.
Sequence reads were then demultiplexed based on sample-specific barcodes, and a FASTQ file was generated for each sample using Illumina's bcl2fastq conversion software. Resulting TempO-Seq data were analyzed by Biospyder using TempO-SeqR software implemented in R.
The FASTQ files were aligned to the known transcript composition of the reduced transcriptome, and a count table (columns = samples, genes = rows) was generated.
Assembly: assembly ASM2063170v1.1; RefSeq GCF_020631705.1
Supplementary files format and content: count matrices with rows as gene features and columns as samples

organism: Daphnia magna

source_name: whole body

extract_protocol:
Samples were prepared for transcriptomics analysis by homogenization in a protease lysis buffer as directed by BioSpyder Technologies, Inc. Daphnia magna were homogenized in 25 µL/well with a 2.3 mm stainless steel bead (BioSpec) at 30 Hz for 2 min using a well plate homogenizer (Bead Ruptor 96, OMNI International). Plates were centrifuged for 3 min at 1000 rpm. Homogenates were pooled (excluding any mortalities) by treatment concentration within each plate, resulting in n=3 replicates per treatment, each containing five pooled organisms (Supplementary Figure 2B). The final plates containing pool homogenates were stored at -80ºC until shipped on dry ice to BioSpyder Technologies, Inc. (Carlsbad, CA) for TempO-seq analysis. Test acceptability criteria were met if control survival was >90 %.
TempO-Seq libraries were prepared by ligating detector oligos to corresponding transcripts present in the whole-body homogenates. Quality control and sample quantification were performed with a DeNovix UV-visible spectrophotometer (DeNovix). Ligated transcripts were subjected to polymerase chain reaction amplification, which also introduces adaptors for sequencing and a sample-specific barcode.

treatment_protocol: High-throughput in vivo exposures were conducted in 1 mL 96-well deep well plates (NEST, Catalog #502162) for 24 h. Each exposure consisted of two chemicals tested in a 1/2 log dilution series with five replicates per treatment concentration on each of three plates (15 organisms exposed per concentration). Final exposure concentrations ranged from 66.67 – 0.021 µM for all data poor chemicals, except fipronil amide (56.43- 0.018 µM) and fexofenadine hydrochloride (32.2 – 0.011 µM). All chemical stocks were prepared in DMSO and had purities > 95%. For each exposure, a Tecan D300e Bioprinter (Corvallis, OR, USA) was used to prepare an initial chemical dosing plate containing 1800 µL/well of test solution diluted in UV-treated, filtered Lake Superior Water in a 2 mL 96-well deep well plate (NEST, Catalog #503162). The concentration of DMSO was normalized across all wells to match those of the highest % DMSO obtained with the chemical delivery (i.e., the highest exposure concentration; generally 0.34% DMSO). Using the bioprinter, the dosing solutions were arranged to evenly distribute replicate exposure groups along the edges of the plate to avoid confounding any edge effects, if present, with treatment. For each exposure, one organism was loaded with 150 µL of control water (UV-treated, filtered Lake Superior Water) to each well of the three 96-well plates. A multi-channel pipette was used to deliver 550 µL of dosing solution to each well for a final volume of 700 µL per well. Each assay included DMSO controls, with final in-well DMSO concentrations never exceeding 0.34% in the exposure plate wells.

value: whole body

value: DMSO


title: whole D. magna, DMSO, sample40

description:
XtraC_C5C6_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample39

description:
XtraC_C3C4_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample43

description:
XtraC_C7C8_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample46

description:
XtraC_C9C10_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt


title: Molar_P5_WT_replicate1

description: Library name: P5_WT_3-2


title: whole D. magna, DMSO, sample38

description:
XtraC_C3C4_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample42

description:
XtraC_C5C6_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample44

description:
XtraC_C7C8_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample37

description:
XtraC_C3C4_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample35

description:
XtraC_C1C2_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, DMSO, sample41

description:
XtraC_C5C6_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample48

description:
XtraC_C9C10_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt


title: whole D. magna, DMSO, sample45

description:
XtraC_C7C8_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample33

description:
XtraC_C11C12_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample36

description:
XtraC_C1C2_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, DMSO, sample34

description:
XtraC_C1C2_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, DMSO, sample32

description:
XtraC_C11C12_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample31

description:
XtraC_C11C12_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample30

description:
ControlQA_DM004_H1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample29

description:
ControlQA_DM004_G1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample28

description:
ControlQA_DM004_A12
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: Molar_P5_WT_replicate3

description: Library name: P5_WT_4-1


title: whole D. magna, DMSO, sample25

description:
ControlQA_DM003_C12
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample26

description:
ControlQA_DM003_G1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample24

description:
ControlQA_DM002_H1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample22

description:
ControlQA_DM002_A12
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample23

description:
ControlQA_DM002_G1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample21

description:
ControlQA_DM001_H1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample20

description:
ControlQA_DM001_G1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample19

description:
ControlQA_DM001_C12
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample9

description:
CON_C3C4_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample14

description:
CON_C7C8_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample12

description:
CON_C5C6_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample5

description:
CON_C1C2_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, DMSO, sample11

description:
CON_C5C6_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample18

description:
CON_C9C10_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt


title: whole D. magna, DMSO, sample15

description:
CON_C7C8_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample13

description:
CON_C7C8_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Hydrochlorothiazide hydrochloride_counts_matrix.txt
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, DMSO, sample8

description:
CON_C3C4_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample7

description:
CON_C3C4_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
1,2H-Phthalazinone_counts_matrix.txt
Gabapentin_counts_matrix.txt


title: whole D. magna, DMSO, sample16

description:
CON_C9C10_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt


title: whole D. magna, DMSO, sample1

description:
CON_C11C12_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample4

description:
CON_C1C2_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, DMSO, sample3

description:
CON_C11C12_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample2

description:
CON_C11C12_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Fexofenadine_counts_matrix.txt
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, DMSO, sample27

description:
ControlQA_DM003_H1
SP0317_gene_counts_DM_GLRI.csv
DM_QAs_counts_matrix.txt


title: whole D. magna, DMSO, sample6

description:
CON_C1C2_C
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metolachlor OA_counts_matrix.txt
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, Cetirizine, sample22

description:
Chem9_C_D6
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt

value: Cetirizine


title: whole D. magna, Cetirizine, sample24

description:
Chem9_C_D8
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample23

description:
Chem9_C_D7
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample21

description:
Chem9_C_D5
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample19

description:
Chem9_C_D3
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample18

description:
Chem9_C_D2
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample17

description:
Chem9_C_D1
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample16

description:
Chem9_B_D8
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, DMSO, sample10

description:
CON_C5C6_A
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Metribuzin-DA_counts_matrix.txt
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, DMSO, sample17

description:
CON_C9C10_B
SP0317_gene_counts_DM_GLRI.csv
DM_control_counts_matrix.txt
Cetirizine_counts_matrix.txt
Fipronil amide_counts_matrix.txt


title: whole D. magna, Cetirizine, sample15

description:
Chem9_B_D7
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample14

description:
Chem9_B_D6
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample11

description:
Chem9_B_D3
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample12

description:
Chem9_B_D4
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample13

description:
Chem9_B_D5
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample9

description:
Chem9_B_D1
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample7

description:
Chem9_A_D7
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample10

description:
Chem9_B_D2
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample8

description:
Chem9_A_D8
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample4

description:
Chem9_A_D4
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample6

description:
Chem9_A_D6
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample5

description:
Chem9_A_D5
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample24

description:
Chem8_C_D8
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt

value: 4-Chlorophenyl methyl sulfoxide


title: whole D. magna, Cetirizine, sample1

description:
Chem9_A_D1
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample3

description:
Chem9_A_D3
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample2

description:
Chem9_A_D2
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, Cetirizine, sample20

description:
Chem9_C_D4
SP0317_gene_counts_DM_GLRI.csv
Cetirizine_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample23

description:
Chem8_C_D7
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample22

description:
Chem8_C_D6
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample19

description:
Chem8_C_D3
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample17

description:
Chem8_C_D1
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample20

description:
Chem8_C_D4
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample15

description:
Chem8_B_D7
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample16

description:
Chem8_B_D8
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample14

description:
Chem8_B_D6
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample13

description:
Chem8_B_D5
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample12

description:
Chem8_B_D4
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample11

description:
Chem8_B_D3
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample10

description:
Chem8_B_D2
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample8

description:
Chem8_A_D8
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample5

description:
Chem8_A_D5
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample4

description:
Chem8_A_D4
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample9

description:
Chem8_B_D1
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample3

description:
Chem8_A_D3
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample2

description:
Chem8_A_D2
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample7

description:
Chem8_A_D7
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample6

description:
Chem8_A_D6
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample21

description:
Chem8_C_D5
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample1

description:
Chem8_A_D1
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample18

description:
Chem7_C_D2
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt

value: Hydrochlorothiazide


title: whole D. magna, Hydrochlorothiazide, sample23

description:
Chem7_C_D7
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample16

description:
Chem7_B_D8
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample24

description:
Chem7_C_D8
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample17

description:
Chem7_C_D1
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample20

description:
Chem7_C_D4
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample21

description:
Chem7_C_D5
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample15

description:
Chem7_B_D7
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample19

description:
Chem7_C_D3
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample22

description:
Chem7_C_D6
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, 4-Chlorophenyl methyl sulfoxide, sample18

description:
Chem8_C_D2
SP0317_gene_counts_DM_GLRI.csv
4-Chlorophenyl methyl sulfoxide_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample11

description:
Chem7_B_D3
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample12

description:
Chem7_B_D4
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample13

description:
Chem7_B_D5
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample10

description:
Chem7_B_D2
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample8

description:
Chem7_A_D8
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample7

description:
Chem7_A_D7
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample6

description:
Chem7_A_D6
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample9

description:
Chem7_B_D1
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample4

description:
Chem7_A_D4
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample3

description:
Chem7_A_D3
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample1

description:
Chem7_A_D1
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample2

description:
Chem7_A_D2
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample24

description:
Chem6_C_D8
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample21

description:
Chem6_C_D5
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample19

description:
Chem6_C_D3
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample20

description:
Chem6_C_D4
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample16

description:
Chem6_B_D8
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample17

description:
Chem6_C_D1
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample18

description:
Chem6_C_D2
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample14

description:
Chem7_B_D6
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample10

description:
Chem6_B_D2
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample14

description:
Chem6_B_D6
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample12

description:
Chem6_B_D4
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample15

description:
Chem6_B_D7
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample8

description:
Chem6_A_D8
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample6

description:
Chem6_A_D6
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample5

description:
Chem6_A_D5
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample4

description:
Chem6_A_D4
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample3

description:
Chem6_A_D3
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample2

description:
Chem6_A_D2
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample1

description:
Chem6_A_D1
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, Hydrochlorothiazide, sample5

description:
Chem7_A_D5
SP0317_gene_counts_DM_GLRI.csv
Hydrochlorothiazide hydrochloride_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample9

description:
Chem6_B_D1
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample24

description:
Chem5_C_D8
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt

value: Metribuzin-DA


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample11

description:
Chem6_B_D3
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample23

description:
Chem6_C_D7
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample22

description:
Chem6_C_D6
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample7

description:
Chem6_A_D7
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample19

description:
Chem5_C_D3
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample20

description:
Chem5_C_D4
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, 2-tert-Butyl-4-methoxyphenol, sample13

description:
Chem6_B_D5
SP0317_gene_counts_DM_GLRI.csv
2-tert-Butyl-4-methoxyphenol_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample17

description:
Chem5_C_D1
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample18

description:
Chem5_C_D2
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample22

description:
Chem5_C_D6
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample15

description:
Chem5_B_D7
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample14

description:
Chem5_B_D6
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample11

description:
Chem5_B_D3
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample12

description:
Chem5_B_D4
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample13

description:
Chem5_B_D5
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample16

description:
Chem5_B_D8
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample10

description:
Chem5_B_D2
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample9

description:
Chem5_B_D1
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample8

description:
Chem5_A_D8
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample5

description:
Chem5_A_D5
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample6

description:
Chem5_A_D6
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample4

description:
Chem5_A_D4
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample2

description:
Chem5_A_D2
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample1

description:
Chem5_A_D1
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Gabapentin, sample24

description:
Chem4_C_D8
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt

value: Gabapentin


title: whole D. magna, Metribuzin-DA, sample23

description:
Chem5_C_D7
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample21

description:
Chem5_C_D5
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Gabapentin, sample20

description:
Chem4_C_D4
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample22

description:
Chem4_C_D6
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample19

description:
Chem4_C_D3
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample21

description:
Chem4_C_D5
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample18

description:
Chem4_C_D2
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample17

description:
Chem4_C_D1
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample16

description:
Chem4_B_D8
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample13

description:
Chem4_B_D5
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample14

description:
Chem4_B_D6
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample15

description:
Chem4_B_D7
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample8

description:
Chem4_A_D8
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample7

description:
Chem5_A_D7
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Gabapentin, sample12

description:
Chem4_B_D4
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample6

description:
Chem4_A_D6
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample10

description:
Chem4_B_D2
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Metribuzin-DA, sample3

description:
Chem5_A_D3
SP0317_gene_counts_DM_GLRI.csv
Metribuzin-DA_counts_matrix.txt


title: whole D. magna, Gabapentin, sample5

description:
Chem4_A_D5
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample7

description:
Chem4_A_D7
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample4

description:
Chem4_A_D4
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample2

description:
Chem4_A_D2
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample3

description:
Chem4_A_D3
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample24

description:
Chem3_C_D8
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, Gabapentin, sample1

description:
Chem4_A_D1
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, Gabapentin, sample23

description:
Chem4_C_D7
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample22

description:
Chem3_C_D6
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample23

description:
Chem3_C_D7
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample21

description:
Chem3_C_D5
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample20

description:
Chem3_C_D4
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample17

description:
Chem3_C_D1
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample18

description:
Chem3_C_D2
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample19

description:
Chem3_C_D3
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample16

description:
Chem3_B_D8
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample13

description:
Chem3_B_D5
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample15

description:
Chem3_B_D7
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, Gabapentin, sample11

description:
Chem4_B_D3
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample11

description:
Chem3_B_D3
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, Gabapentin, sample9

description:
Chem4_B_D1
SP0317_gene_counts_DM_GLRI.csv
Gabapentin_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample12

description:
Chem3_B_D4
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample7

description:
Chem3_A_D7
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample6

description:
Chem3_A_D6
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample9

description:
Chem3_B_D1
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample4

description:
Chem3_A_D4
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample3

description:
Chem3_A_D3
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample2

description:
Chem3_A_D2
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample1

description:
Chem3_A_D1
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample8

description:
Chem3_A_D8
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample22

description:
Chem2_C_D7
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt

value: 3,4-Dichlorophenyl isocyanate


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample21

description:
Chem2_C_D6
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample19

description:
Chem2_C_D4
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample20

description:
Chem2_C_D5
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample18

description:
Chem2_C_D3
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample17

description:
Chem2_C_D2
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample16

description:
Chem2_B_D8
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample15

description:
Chem2_B_D7
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample14

description:
Chem2_B_D6
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample13

description:
Chem2_B_D5
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample14

description:
Chem3_B_D6
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample12

description:
Chem2_B_D4
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample11

description:
Chem2_B_D3
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample10

description:
Chem3_B_D2
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample9

description:
Chem2_B_D1
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample10

description:
Chem2_B_D2
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample8

description:
Chem2_A_D8
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample7

description:
Chem2_A_D7
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample6

description:
Chem2_A_D6
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample5

description:
Chem2_A_D5
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample4

description:
Chem2_A_D4
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample2

description:
Chem2_A_D2
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 1(2H)-Phthalazinone, sample5

description:
Chem3_A_D5
SP0317_gene_counts_DM_GLRI.csv
1,2H-Phthalazinone_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample1

description:
Chem2_A_D1
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample23

description:
Chem2_C_D8
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample23

description:
Chem12_C_D7
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt

value: cis-Nonachlordane


title: whole D. magna, cis-Nonachlordane, sample22

description:
Chem12_C_D6
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample21

description:
Chem12_C_D5
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample20

description:
Chem12_C_D4
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample19

description:
Chem12_C_D3
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample18

description:
Chem12_C_D2
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample16

description:
Chem12_B_D8
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample17

description:
Chem12_C_D1
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample15

description:
Chem12_B_D7
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample14

description:
Chem12_B_D6
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample13

description:
Chem12_B_D5
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample12

description:
Chem12_B_D4
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample10

description:
Chem12_B_D2
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample9

description:
Chem12_B_D1
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample8

description:
Chem12_A_D8
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample7

description:
Chem12_A_D7
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample6

description:
Chem12_A_D6
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample5

description:
Chem12_A_D5
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample4

description:
Chem12_A_D4
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample3

description:
Chem12_A_D3
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, 3,4-Dichlorophenyl isocyanate, sample3

description:
Chem2_A_D3
SP0317_gene_counts_DM_GLRI.csv
3,4-Dichlorophenyl isocyanate_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample24

description:
Chem12_C_D8
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample24

description:
Chem11_C_D8
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt

value: Fexofenadine


title: whole D. magna, cis-Nonachlordane, sample2

description:
Chem12_A_D2
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample23

description:
Chem11_C_D7
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample22

description:
Chem11_C_D6
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample20

description:
Chem11_C_D4
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample21

description:
Chem11_C_D5
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample19

description:
Chem11_C_D3
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample14

description:
Chem11_B_D6
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample13

description:
Chem11_B_D5
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample17

description:
Chem11_C_D1
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample12

description:
Chem11_B_D4
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, cis-Nonachlordane, sample11

description:
Chem12_B_D3
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample11

description:
Chem11_B_D3
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample10

description:
Chem11_B_D2
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample6

description:
Chem11_A_D6
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample5

description:
Chem11_A_D5
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample9

description:
Chem11_B_D1
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample7

description:
Chem11_A_D7
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample3

description:
Chem11_A_D3
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample2

description:
Chem11_A_D2
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample4

description:
Chem11_A_D4
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample23

description:
Chem10_C_D7
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt

value: Fipronil amide


title: whole D. magna, cis-Nonachlordane, sample1

description:
Chem12_A_D1
SP0317_gene_counts_DM_GLRI.csv
cis-Nonachlordane_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample1

description:
Chem11_A_D1
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample24

description:
Chem10_C_D8
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample22

description:
Chem10_C_D6
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample20

description:
Chem10_C_D4
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample19

description:
Chem10_C_D3
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample18

description:
Chem11_C_D2
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample18

description:
Chem10_C_D2
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample21

description:
Chem10_C_D5
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample17

description:
Chem10_C_D1
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample15

description:
Chem11_B_D7
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample12

description:
Chem10_B_D4
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample16

description:
Chem10_B_D8
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample13

description:
Chem10_B_D5
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample14

description:
Chem10_B_D6
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fexofenadine, sample8

description:
Chem11_A_D8
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample11

description:
Chem10_B_D3
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample9

description:
Chem10_B_D1
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample10

description:
Chem10_B_D2
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample7

description:
Chem10_A_D7
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample8

description:
Chem10_A_D8
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample6

description:
Chem10_A_D6
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample5

description:
Chem10_A_D5
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample4

description:
Chem10_A_D4
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample3

description:
Chem10_A_D3
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample1

description:
Chem10_A_D1
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample24

description:
Chem1_C_D8
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt

value: Metolachlor OA


title: whole D. magna, Fexofenadine, sample16

description:
Chem11_B_D8
SP0317_gene_counts_DM_GLRI.csv
Fexofenadine_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample23

description:
Chem1_C_D7
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample2

description:
Chem10_A_D2
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample21

description:
Chem1_C_D5
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample20

description:
Chem1_C_D4
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample19

description:
Chem1_C_D3
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample18

description:
Chem1_C_D2
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample17

description:
Chem1_C_D1
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample16

description:
Chem1_B_D8
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample22

description:
Chem1_C_D6
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample15

description:
Chem1_B_D7
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample14

description:
Chem1_B_D6
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample13

description:
Chem1_B_D5
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Fipronil amide, sample15

description:
Chem10_B_D7
SP0317_gene_counts_DM_GLRI.csv
Fipronil amide_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample12

description:
Chem1_B_D4
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample8

description:
Chem1_A_D8
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample9

description:
Chem1_B_D1
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample7

description:
Chem1_A_D7
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample11

description:
Chem1_B_D3
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample6

description:
Chem1_A_D6
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample5

description:
Chem1_A_D5
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample10

description:
Chem1_B_D2
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample2

description:
Chem1_A_D2
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample3

description:
Chem1_A_D3
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample1

description:
Chem1_A_D1
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: whole D. magna, Metolachlor OA, sample4

description:
Chem1_A_D4
SP0317_gene_counts_DM_GLRI.csv
Metolachlor OA_counts_matrix.txt


title: Endometrial_Patient_tumor3, ATAC-Seq

city: Dallas

first: Ram

last: Mani

state: Texas

address: 5323 Harry Hines Blvd NB6.444

department: Pathology

institute: UT Southwestern Medical Center

description: Library name: Patient_tumor3

library_source: genomic

data_processing:
ATAC-Seq reads were aligned to the hg19 genome using Bowtie 2 (v2.1.0).
To ensure data quality, duplicate reads were removed with Picard (v2.20.3) and reads with low mapping quality (MAPQ < 10) were excluded using Samtools (v1.9).
Peaks were identified using MACS2 (v2.1.0).
Average coverage plots were generated with Deeptools (v2.4.2).
Assembly: hg19
Supplementary files format and content: bigWig

molecule: genomic DNA

source_name: Fresh endometrial tumor sample

extract_protocol:
Tumors were finely chopped and lysed in ATAC-seq lysis buffer. Following this, nuclei were washed and incubated in Tn5 transposase mixture.
Libraries were constructed using Nextera adapters (Illumina) and the KAPA HiFi Hotstart Ready mix.

value: Fresh endometrial tumor sample


title: Endometrial_Patient_tumor1, ATAC-Seq

description: Library name: Patient_tumor1


title: Endometrial_Patient_tumor2-1, ATAC-Seq

description: Library name: Patient_tumor2-1


title: Endometrial_Patient_tumor2-2, ATAC-Seq

description: Library name: Patient_tumor2-2