title: 689C_001_GEX_CZI-IA11485689

description:
Library name: 689C_001_GEX_CZI-IA11485689_lib
scRNA-seq of mononuclear cells from pooled:spleen,thoracic lymph node

source_name: pooled:spleen,thoracic lymph node

tag: age

tag: dev stage

value: pooled:spleen,thoracic lymph node

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

tag: living at_sample_collection

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFOA, sample2

status: Public on Jun 06 2025

type: SRA

city: Duluth

first: Peter

last: Schumann

state: MN

address: 6201 Congdon Blvd

country: USA

institute: United States Environmental Protection Agency

library_source: transcriptomic

data_processing:
Sequencing was performed in a 1x100bp single read format using Illumina NovaSeq SP flow cells (Illumina, Inc., San Diego, CA, USA).
The R. subcapitata reference genome (GCA_003203535.1) was indexed using STAR v2.7.10a (Dobin et al., 2012) using the following parameters: genomeSAindexNbases = 11, sjdbOverhang = 99, and sjdbGTFfeatureExon = gene.
The raw, 1x100bp single end FASTQ sequence files were trimmed, quality filtered (Phred score <15), and had UMIs and adapter sequences removed after deduplication using fastp v0.23.2 (Chen 2023, Chen et al., 2018).
Quality reads were aligned and mapped to the indexed reference genome using STAR. The resulting alignment files were sorted by coordinates and indexed by sample using Samtools v1.15.1 (Danecek et al., 2021).
Aligned reads were quantified with respect to gene features using the “featureCounts” program (v2.0.6) of the subread package (Liao et al., 2014). A 1,400 bp extension was added to each read at the 5’ end as most reads aligned at unannotated 3’ untranslated regions (UTR) of the genome and gene features with the largest overlap were counted. The quantified reads were organized into separate (tab-delimited) count matrix files for each chemical treatment group where columns represented samples and rows represented genes.
Assembly: GCA_003203535.1
Supplementary files format and content: count matrices with rows as gene features and columns as samples

molecule: polyA RNA

organism: Raphidocelis subcapitata

source_name: whole body

growth_protocol: reared in Woods Hole MBL media at 24°C with constant light (~250 µmol/m2/s)

extract_protocol:
RNA was extracted from pooled homogenates (Plant/Fungi Total RNA Purification kits, #31900, Norgen Biotek, Ontario, Canada) with a protocol slightly modified from the manufacturer’s instructions.  First, the algae were centrifuged, and the supernatant was aspirated.  Glass beads (0.5 mm) were added to each well and the plate went through five cycles of freezing with liquid nitrogen and bead milling for 2 minutes.  Next, 400 µl of kit Buffer C was added to each well and then the manufacturer’s procedure was followed.
Libraries were prepared using the Lexogen QuantSeq 3’ mRNA-Seq V2 Library Prep Kit with UDI (Unique Dual Index) and QuantSeq UMI (Unique Molecular Identifier) module with PhiX spike-in making up ~5% of the total reads in each lane. The UMI module (https://faqs.lexogen.com/faq/quantseq-umi-module) added a random, 6nt sequence to the start of each read 1 (R1), followed by a constant, 4nt (TATA) spacer. Preparation followed manufacturer’s recommendations. Completed libraries were quality checked and quantified using Qubit dsDNA HS and Agilent 4200 TapeStation HS DNA1000 assays. Libraries were pooled in equimolar amounts and quantified using the Invitrogen Collibri Quantification qPCR kit.

treatment_protocol: Using 96-well plates, two PFAS per exposure were serially diluted in algae media (Woods Hole MBL media) with a Biomek i5 liquid handler to final nominal exposure concentrations of 100, 32, 10, 3.2, 1, 0.3, 0.1, and 0.03 uM with five replicates per concentration of each PFAS.  There were also 8 control replicates (no PFAS) and two concentrations of CuSO4 (0.75 and 1.5 mM) with three replicates each as positive controls.  All PFAS and control replicates were arranged on a 96-well plate in a predetermined systematic layout such that each concentration was distributed to equal numbers of edge and interior wells.  All wells contained 0.33% solvent.  Prior to exposure, the cells per ml of a R. subcapitata culture in exponential growth was adjusted to approximately 5 x 10^6 cells/ml.  Each well of exposure plates was loaded with 800 µl of algal suspension.  All assays were conducted in four replicate, 96-well plates using deep-well plates sealed with optically clear adhesive covers.  Three of the replicate plates were randomly designated for transcriptomic analysis while the fourth plate was used for phenotypic measurements.  Algae were kept in suspension during incubation by shaking using a temperature controlled orbital shaker.

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFOA (DTXSID8031865)


title: 689C_001_GEX_CZI-IA11485687

city: Palo Alto

first: Lattice

last: Data Coordination

state: CA

address: 3165 Porter Drive

department: Genetics

institute: Stanford University

description:
Library name: 689C_001_GEX_CZI-IA11485687_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,jejunum lamina propria

library_source: transcriptomic single cell

data_processing:
raw_matrix_normalized:False; raw_matrix_value_scale:linear; raw_matrix_background_barcodes_included:False
Assembly: GRCh38, GENCODE32
Supplementary files format and content: h5ad, count matrix

organism: Homo sapiens

extract_protocol:
Tissue was obtained from deceased organ donors at the time of organ acquisition for clinical transplantation through an approved protocol and material transfer agreement via LiveOnNY, the organ procurement organization for the New York metropolitan area and through the Cambridge Biorepository for Translational Medicine. Each tissue was subjected to a tissue-specific protocol to maximize mononuclear cell (MNC) recovery and viability across a diversity of sites. A series of detailed protocols are available on protocols.io (https://dx.doi.org/10.17504/protocols.io.bwrjpd4n, https://dx.doi.org/10.17504/protocols.io.bwr9pd96, https://dx.doi.org/10.17504/protocols.io.bwsapeae, https://dx.doi.org/10.17504/protocols.io.bwq4pdyw, https://dx.doi.org/10.17504/protocols.io.bwq7pdzn, https://dx.doi.org/10.17504/protocols.io.bwr6pd9e, https://dx.doi.org/10.17504/protocols.io.bz4qp8vw). Each individual tissue single cell suspension (500,000 or 1,000,000 cells) was hash tagged to allow pooling of tissue samples. CITE-seq labeling used either a TotalSeq-C cocktail containing 137 protein targets (10x 5’ libraries) or TotalSeq-A cocktail containing 277 protein targets (10x 3’ libraries).
For scRNA-seq experiments, single cells were loaded onto the channels of a Chromium chip (10x Genomics). cDNA synthesis, amplification, and sequencing libraries were generated using either the Single Cell 5′ Reagent (v1 and v2) or 3′ Reagent (v3) Kits. TCRαβ and BCR paired VDJ libraries were prepared from samples made with the 5′ Reagent kit. All libraries were sequenced on either an Illumina NextSeq 500/550 or NovaSeq 6000 instrument.

tag: donor id

value: 40-44 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Unknown

tag: source

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: death type

value: circulatory death

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, 6:2FTS, sample21


title: 689C_001_GEX_CZI-IA11485690

description:
Library name: 689C_001_GEX_CZI-IA11485690_lib
scRNA-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: age

tag: dev stage

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFOA, sample1

tag: tissue

tag: developmental stage

tag: treatment


title: 689C_001_GEX_CZI-IA11485686

description:
Library name: 689C_001_GEX_CZI-IA11485686_lib
scRNA-seq of mononuclear cells from pooled:lung,liver

tag: donor id

tag: Sex

tag: ethnicity

tag: source

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: UMI


title: 689C_001_GEX_CZI-IA11485685

description:
Library name: 689C_001_GEX_CZI-IA11485685_lib
scRNA-seq of mononuclear cells from pooled:lung,liver

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, 6:2FTS, sample20

value: whole body


title: 689C_001_GEX_CZI-IA11485683

description:
Library name: 689C_001_GEX_CZI-IA11485683_lib
scRNA-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: age

tag: dev stage

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: assay type


title: R. subcapitata, 24 h exposure, 6:2FTS, sample18

tag: tissue

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, 6:2FTS, sample19


title: 689C_001_GEX_CZI-IA11485682

description:
Library name: 689C_001_GEX_CZI-IA11485682_lib
scRNA-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: donor id

tag: Sex

tag: ethnicity

value: pooled:spleen,thoracic lymph node

tag: source

tag: raw matrix_assays


title: 689C_001_GEX_CZI-IA11485681

description:
Library name: 689C_001_GEX_CZI-IA11485681_lib
scRNA-seq of mononuclear cells from pooled:spleen,thoracic lymph node

value: 40-44 years

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation


title: 689C_001_GEX_CZI-IA11485684

description:
Library name: 689C_001_GEX_CZI-IA11485684_lib
scRNA-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: age

tag: dev stage

value: adult stage

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, 6:2FTS, sample16

tag: tissue

tag: developmental stage


title: 768B_001_ADT_CZI-IA12960335

description:
Library name: 768B_001_ADT_CZI-IA12960335_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

library_source: other

molecule: other

tag: donor id

value: 20-24 years

value: male

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

tag: living at_sample_collection

value: brain stem death

value: CITE 10x 5' v2

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, 6:2FTS, sample17

tag: treatment


title: 689C_001_ADT_CZI-IA11512598

description:
Library name: 689C_001_ADT_CZI-IA11512598_lib
CITE-seq of mononuclear cells from pooled:lung,liver

tag: Sex

tag: ethnicity

value: Unknown

tag: source

value: FALSE

tag: sample preservation_method

value: fresh

tag: death type

value: circulatory death

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: 689C_001_ADT_CZI-IA11512597

description:
Library name: 689C_001_ADT_CZI-IA11512597_lib
CITE-seq of mononuclear cells from pooled:lung,liver

tag: age

tag: dev stage

value: Cambridge Biorepository for Translational Medicine

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target


title: R. subcapitata, 24 h exposure, 6:2FTS, sample14

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, 6:2FTS, sample12


title: 689C_001_ADT_CZI-IA11512599

description:
Library name: 689C_001_ADT_CZI-IA11512599_lib
CITE-seq of mononuclear cells from skin of body

source_name: skin of body

tag: donor id

value: 40-44 years

value: adult stage

value: male

value: skin of body

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

tag: living at_sample_collection

tag: enriched cell_type

tag: assay type


title: 689C_001_ADT_CZI-IA11512594

description:
Library name: 689C_001_ADT_CZI-IA11512594_lib
CITE-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: Sex

tag: ethnicity

value: pooled:spleen,thoracic lymph node

tag: source

tag: sample preservation_method

value: CITE 10x 5' v2

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, 6:2FTS, sample10

tag: treatment


title: 689C_001_ADT_CZI-IA11512595

description:
Library name: 689C_001_ADT_CZI-IA11512595_lib
CITE-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: age

tag: dev stage

value: Unknown

value: FALSE

value: fresh

tag: death type

value: circulatory death

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, 6:2FTS, sample13

tag: tissue

tag: developmental stage


title: 689C_001_ADT_CZI-IA11512596

description:
Library name: 689C_001_ADT_CZI-IA11512596_lib
CITE-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: donor id

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: 689C_001_ADT_CZI-IA11512593

description:
Library name: 689C_001_ADT_CZI-IA11512593_lib
CITE-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: Sex

tag: ethnicity

tag: source

tag: sample preservation_method

value: UMI

value: gene symbol, antibody target

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, 6:2FTS, sample9

value: whole body

value: Exponential Growth Stage

tag: treatment


title: 689C_001_ADT_CZI-IA11512592

description:
Library name: 689C_001_ADT_CZI-IA11512592_lib
CITE-seq of mononuclear cells from skin of body

tag: age

value: 40-44 years

tag: dev stage

value: adult stage

value: male

value: skin of body

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

tag: antibodies/tags


title: 689C_001_ADT_CZI-IA11512591

description:
Library name: 689C_001_ADT_CZI-IA11512591_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,jejunum lamina propria

tag: donor id

tag: tissue

tag: suspension cell_depletion_factors

value: CITE 10x 5' v2

tag: raw matrix_assays

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, 6:2FTS, sample8

tag: developmental stage


title: R. subcapitata, 24 h exposure, 6:2FTS, sample7


title: R. subcapitata, 24 h exposure, PFNA, sample7

value: PFNA (DTXSID8031863)


title: 689C_001_ADT_CZI-IA11512589

description:
Library name: 689C_001_ADT_CZI-IA11512589_lib
CITE-seq of mononuclear cells from pooled:lung,liver

tag: Sex

tag: ethnicity

value: Unknown

tag: living at_sample_collection

value: FALSE

value: fresh

value: circulatory death

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: 689C_001_ADT_CZI-IA11512587

description:
Library name: 689C_001_ADT_CZI-IA11512587_lib
CITE-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PFOA, sample13

value: whole body

tag: treatment

value: PFOA (DTXSID8031865)


title: R. subcapitata, 24 h exposure, 6:2FTS, sample6

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, 6:2FTS, sample4


title: 689C_001_ADT_CZI-IA11512586

description:
Library name: 689C_001_ADT_CZI-IA11512586_lib
CITE-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: age

value: 40-44 years

tag: dev stage

value: adult stage

value: pooled:spleen,thoracic lymph node

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target


title: R. subcapitata, 24 h exposure, 6:2FTS, sample11

tag: tissue


title: R. subcapitata, 24 h exposure, 6:2FTS, sample15

tag: developmental stage


title: R. subcapitata, 24 h exposure, 6:2FTS, sample3


title: R. subcapitata, 24 h exposure, 6:2FTS, sample5


title: 689C_001_ADT_CZI-IA11512588

description:
Library name: 689C_001_ADT_CZI-IA11512588_lib
CITE-seq of mononuclear cells from pooled:bone marrow,mesenteric lymph node

tag: donor id

tag: Sex

value: male

tag: suspension cell_depletion_factors

value: CITE 10x 5' v2

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTDoDA, sample21

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, 6:2FTS, sample2


title: 647C_001_GEX_CZI-IA10585544

description:
Library name: 647C_001_GEX_CZI-IA10585544_lib
scRNA-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: ethnicity

value: Unknown

tag: source

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

value: circulatory death

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: scRNA-seq


title: 647C_001_GEX_CZI-IA10585542

description:
Library name: 647C_001_GEX_CZI-IA10585542_lib
scRNA-seq of mononuclear cells from liver

source_name: liver

tag: age

tag: dev stage

value: liver

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type


title: 647C_001_GEX_CZI-IA10585543

description:
Library name: 647C_001_GEX_CZI-IA10585543_lib
scRNA-seq of mononuclear cells from pooled:liver,jejunum lamina propria

source_name: pooled:liver,jejunum lamina propria

value: 40-44 years

value: adult stage

tag: tissue

value: pooled:liver,jejunum lamina propria

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation


title: 689C_001_ADT_CZI-IA11512585

description:
Library name: 689C_001_ADT_CZI-IA11512585_lib
CITE-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: donor id

tag: Sex

value: male

value: pooled:spleen,thoracic lymph node

tag: suspension cell_depletion_factors

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFTDoDA, sample19

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, PFTDoDA, sample20


title: R. subcapitata, 24 h exposure, PFTDoDA, sample18


title: R. subcapitata, 24 h exposure, PFTDoDA, sample17


title: 647C_001_ADT_CZI-IA10585641

description:
Library name: 647C_001_ADT_CZI-IA10585641_lib
CITE-seq of mononuclear cells from pooled:skin of body,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: ethnicity

value: Unknown

tag: source

tag: living at_sample_collection

value: FALSE

value: fresh

value: CITE 10x 5' v2

tag: raw matrix_value_units

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 689C_001_ADT_CZI-IA11512590

description:
Library name: 689C_001_ADT_CZI-IA11512590_lib
CITE-seq of mononuclear cells from pooled:lung,liver

tag: age

tag: dev stage

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

value: circulatory death

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, PFTDoDA, sample16

tag: tissue


title: 647C_001_ADT_CZI-IA10585639

description:
Library name: 647C_001_ADT_CZI-IA10585639_lib
CITE-seq of mononuclear cells from pooled:liver,jejunum lamina propria

tag: donor id

value: 40-44 years

value: adult stage

value: male

value: pooled:liver,jejunum lamina propria

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

tag: assay type


title: R. subcapitata, 24 h exposure, PFTDoDA, sample15

value: whole body

tag: developmental stage

tag: treatment


title: 647C_001_ADT_CZI-IA10585638

description:
Library name: 647C_001_ADT_CZI-IA10585638_lib
CITE-seq of mononuclear cells from liver

tag: Sex

tag: ethnicity

value: liver

tag: source

tag: suspension cell_depletion_factors

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFTDoDA, sample14

value: Exponential Growth Stage

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, PFTDoDA, sample13


title: R. subcapitata, 24 h exposure, 6:2FTS, sample1


title: 640C_001_GEX_CZI-IA10471915

description:
Library name: 640C_001_GEX_CZI-IA10471915_lib
scRNA-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: age

value: 70-74 years

tag: dev stage

value: female

value: Unknown

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

tag: smoking history

value: former, 40 years since cessation

tag: cause of_death

value: intracranial hemorrhage

tag: test results.ebv

value: positive

tag: test results.cmv

tag: raw matrix_value_units

value: scRNA-seq


title: 647C_001_GEX_CZI-IA10585545

description:
Library name: 647C_001_GEX_CZI-IA10585545_lib
scRNA-seq of mononuclear cells from pooled:skin of body,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

value: 40-44 years

value: adult stage

value: male

tag: tissue

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

tag: death type

value: circulatory death

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type


title: 640C_001_GEX_CZI-IA10471916

description:
Library name: 640C_001_GEX_CZI-IA10471916_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

tag: age

value: 70-74 years

tag: dev stage

tag: Sex

tag: ethnicity

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays


title: 640C_001_GEX_CZI-IA10471918

description:
Library name: 640C_001_GEX_CZI-IA10471918_lib
scRNA-seq of mononuclear cells from skin of body

tag: donor id

value: female

value: Unknown

value: skin of body

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: smoking history

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: raw matrix_value_units


title: 640C_001_GEX_CZI-IA10471917

description:
Library name: 640C_001_GEX_CZI-IA10471917_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

tag: tissue

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

value: FALSE

tag: sample preservation_method

value: fresh

value: former, 40 years since cessation

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, PFTDoDA, sample11

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, PFTDoDA, sample9


title: R. subcapitata, 24 h exposure, PFTDoDA, sample8


title: 640C_001_GEX_CZI-IA10471912

description:
Library name: 640C_001_GEX_CZI-IA10471912_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

tag: ethnicity

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: intracranial hemorrhage

value: positive

tag: raw matrix_assays

value: scRNA-seq


title: 640C_001_GEX_CZI-IA10471913

description:
Library name: 640C_001_GEX_CZI-IA10471913_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

value: 70-74 years

tag: tissue

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: circulatory death

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: raw matrix_value_units

value: UMI

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: 640C_001_GEX_CZI-IA10471914

description:
Library name: 640C_001_GEX_CZI-IA10471914_lib
scRNA-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: female

value: Unknown

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: enriched cell_type

tag: assay type


title: 647C_001_ADT_CZI-IA10585640

description:
Library name: 647C_001_ADT_CZI-IA10585640_lib
CITE-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 40-44 years

tag: dev stage

tag: Sex

value: male

tag: ethnicity

tag: tissue

tag: source

tag: suspension cell_depletion_factors

value: FALSE

value: fresh

value: CITE 10x 5' v2

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 640C_001_GEX_CZI-IA10471910

description:
Library name: 640C_001_GEX_CZI-IA10471910_lib
scRNA-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: adult stage

value: Cambridge Biorepository for Translational Medicine

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: former, 40 years since cessation

tag: death type

tag: cause of_death

value: intracranial hemorrhage

tag: test results.ebv

value: positive

tag: test results.cmv

tag: raw matrix_value_units

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTDoDA, sample5

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, PFTDoDA, sample7


title: R. subcapitata, 24 h exposure, PFTDoDA, sample4


title: 640C_001_GEX_CZI-IA10471909

description:
Library name: 640C_001_GEX_CZI-IA10471909_lib
scRNA-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 70-74 years

tag: dev stage

tag: Sex

value: female

tag: ethnicity

value: Unknown

value: circulatory death

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PFTDoDA, sample6

tag: tissue


title: 640C_001_ADT_CZI-IA10472013

description:
Library name: 640C_001_ADT_CZI-IA10472013_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

tag: cause of_death

value: CITE 10x 5' v2

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 640C_001_ADT_CZI-IA10472014

description:
Library name: 640C_001_ADT_CZI-IA10472014_lib
CITE-seq of mononuclear cells from skin of body

tag: donor id

tag: age

tag: dev stage

tag: Sex

tag: ethnicity

value: skin of body

value: Cambridge Biorepository for Translational Medicine

value: former, 40 years since cessation

value: intracranial hemorrhage

tag: test results.ebv

value: positive

tag: test results.cmv

tag: raw matrix_value_units


title: R. subcapitata, 24 h exposure, PFTDoDA, sample2

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTDoDA (DTXSID70276659)


title: 640C_001_GEX_CZI-IA10471911

description:
Library name: 640C_001_GEX_CZI-IA10471911_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

value: 70-74 years

value: female

value: Unknown

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: circulatory death

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTDoDA, sample3


title: 640C_001_ADT_CZI-IA10472012

description:
Library name: 640C_001_ADT_CZI-IA10472012_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

tag: ethnicity

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

value: FALSE

value: fresh

tag: smoking history

tag: death type

tag: cause of_death

value: CITE 10x 5' v2

tag: raw matrix_assays

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTDoDA, sample12

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFTDoDA (DTXSID70276659)


title: R. subcapitata, 24 h exposure, PFTDoDA, sample1


title: R. subcapitata, 24 h exposure, PFTDoDA, sample10


title: 640C_001_ADT_CZI-IA10472009

description:
Library name: 640C_001_ADT_CZI-IA10472009_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

value: 70-74 years

value: female

value: Unknown

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: former, 40 years since cessation

value: intracranial hemorrhage

tag: test results.ebv

value: positive

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: R. subcapitata, 24 h exposure, FC8DoD, sample21

value: FC8DoD (DTXSID70381090)


title: 640C_001_ADT_CZI-IA10472008

description:
Library name: 640C_001_ADT_CZI-IA10472008_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

tag: ethnicity

value: FALSE

tag: smoking history

tag: death type

value: circulatory death

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, FC8DoD, sample18

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, FC8DoD, sample20

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, FC8DoD, sample19


title: 640C_001_ADT_CZI-IA10472010

description:
Library name: 640C_001_ADT_CZI-IA10472010_lib
CITE-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_assays

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 640C_001_ADT_CZI-IA10472006

description:
Library name: 640C_001_ADT_CZI-IA10472006_lib
CITE-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 70-74 years

tag: dev stage

tag: Sex

value: female

tag: ethnicity

value: Unknown

value: Cambridge Biorepository for Translational Medicine

tag: smoking history

value: former, 40 years since cessation

value: intracranial hemorrhage

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: R. subcapitata, 24 h exposure, FC8DoD, sample16

tag: tissue

tag: developmental stage

tag: treatment

value: FC8DoD (DTXSID70381090)


title: 640C_001_ADT_CZI-IA10472007

description:
Library name: 640C_001_ADT_CZI-IA10472007_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,lung,liver,jejunum lamina propria

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: death type

value: circulatory death

tag: cause of_death

tag: test results.ebv

value: positive

value: UMI

value: gene symbol, antibody target

tag: enriched cell_type

tag: assay type


title: 637C_001_GEX_CZI-IA10466290

description:
Library name: 637C_001_GEX_CZI-IA10466290_lib
scRNA-seq of mononuclear cells from jejunal epithelium

source_name: jejunal epithelium

tag: donor id

tag: age

value: 50-54 years

tag: dev stage

tag: Sex

value: male

tag: ethnicity

value: jejunal epithelium

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

value: fresh

tag: smoking history

value: former, 3 years since cessation

tag: test results.cmv

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: 637C_001_GEX_CZI-IA10466291

description:
Library name: 637C_001_GEX_CZI-IA10466291_lib
scRNA-seq of mononuclear cells from skin of body

value: Unknown

tag: tissue

value: skin of body

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: mononuclear cell


title: R. subcapitata, 24 h exposure, FC8DoD, sample14

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8DoD (DTXSID70381090)


title: 640C_001_ADT_CZI-IA10472011

description:
Library name: 640C_001_ADT_CZI-IA10472011_lib
CITE-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 70-74 years

tag: dev stage

value: adult stage

tag: Sex

value: female

value: FALSE

tag: sample preservation_method

value: former, 40 years since cessation

tag: death type

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

tag: test results.ebv

value: positive

value: CITE 10x 5' v2

value: UMI

tag: enriched cell_type

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8DoD, sample17

tag: tissue


title: 637C_001_GEX_CZI-IA10466289

description:
Library name: 637C_001_GEX_CZI-IA10466289_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

value: 50-54 years

value: male

tag: ethnicity

value: Unknown

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: fresh

tag: smoking history

value: former, 3 years since cessation

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8DoD, sample11

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8DoD (DTXSID70381090)


title: R. subcapitata, 24 h exposure, FC8DoD, sample12


title: 637C_001_GEX_CZI-IA10466288

description:
Library name: 637C_001_GEX_CZI-IA10466288_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

value: FALSE

tag: sample preservation_method

tag: death type

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

tag: test results.ebv

value: positive

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: mononuclear cell


title: 637C_001_GEX_CZI-IA10466286

description:
Library name: 637C_001_GEX_CZI-IA10466286_lib
scRNA-seq of mononuclear cells from jejunal epithelium

value: 50-54 years

value: male

tag: ethnicity

value: Unknown

tag: tissue

value: jejunal epithelium

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: smoking history

tag: test results.cmv

value: UMI

tag: assay type


title: R. subcapitata, 24 h exposure, FC8DoD, sample13

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, FC8DoD, sample10


title: 637C_001_GEX_CZI-IA10466287

description:
Library name: 637C_001_GEX_CZI-IA10466287_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: Cambridge Biorepository for Translational Medicine

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: sample preservation_method

value: fresh

value: former, 3 years since cessation

tag: death type

tag: library protocol

tag: raw matrix_genome_annotation

value: gene symbol, antibody target

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, FC8DoD, sample15

tag: tissue

value: whole body

value: Exponential Growth Stage

value: FC8DoD (DTXSID70381090)


title: R. subcapitata, 24 h exposure, FC8DoD, sample9


title: 640C_001_ADT_CZI-IA10472005

description:
Library name: 640C_001_ADT_CZI-IA10472005_lib
CITE-seq of mononuclear cells from pooled:spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 70-74 years

value: adult stage

value: female

tag: ethnicity

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: former, 40 years since cessation

value: circulatory death

tag: cause of_death

tag: test results.ebv

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8DoD, sample8

tag: developmental stage

tag: treatment


title: 637C_001_GEX_CZI-IA10466284

description:
Library name: 637C_001_GEX_CZI-IA10466284_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 50-54 years

tag: dev stage

tag: Sex

value: male

value: Unknown

value: Cambridge Biorepository for Translational Medicine

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: death type

value: intracranial hemorrhage

value: positive

tag: test results.cmv

value: UMI

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8DoD, sample7

tag: tissue

value: whole body

value: Exponential Growth Stage

value: FC8DoD (DTXSID70381090)


title: R. subcapitata, 24 h exposure, FC8DoD, sample5


title: R. subcapitata, 24 h exposure, FC8DoD, sample6


title: 637C_001_GEX_CZI-IA10466281

description:
Library name: 637C_001_GEX_CZI-IA10466281_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

value: adult stage

tag: ethnicity

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

value: former, 3 years since cessation

value: circulatory death

tag: cause of_death

tag: test results.ebv

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: gene symbol, antibody target

tag: raw matrix_assays


title: 637C_001_GEX_CZI-IA10466285

description:
Library name: 637C_001_GEX_CZI-IA10466285_lib
scRNA-seq of mononuclear cells from pooled:lung,jejunum lamina propria

source_name: pooled:lung,jejunum lamina propria

tag: donor id

tag: age

value: 50-54 years

tag: dev stage

tag: Sex

value: male

value: pooled:lung,jejunum lamina propria

tag: raw matrix_cellranger_assay_chemistry

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: 637C_001_GEX_CZI-IA10466282

description:
Library name: 637C_001_GEX_CZI-IA10466282_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: ethnicity

value: Unknown

tag: tissue

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

tag: smoking history

tag: death type

value: intracranial hemorrhage

value: positive

tag: test results.cmv

tag: assay type


title: 637C_001_GEX_CZI-IA10466283

description:
Library name: 637C_001_GEX_CZI-IA10466283_lib
scRNA-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: cause of_death

tag: test results.ebv

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: mononuclear cell

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FC8DoD, sample4

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8DoD (DTXSID70381090)


title: 637C_001_ADT_CZI-IA10466386

description:
Library name: 637C_001_ADT_CZI-IA10466386_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium

source_name: pooled:jejunal epithelium

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

value: pooled:jejunal epithelium

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

value: FALSE

value: fresh

value: former, 3 years since cessation

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FC8DoD, sample3

tag: tissue


title: 637C_001_ADT_CZI-IA10466387

description:
Library name: 637C_001_ADT_CZI-IA10466387_lib
CITE-seq of mononuclear cells from skin of body

value: 50-54 years

value: male

tag: ethnicity

value: Unknown

value: skin of body

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

tag: test results.cmv

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, FC8DoD, sample2

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FC8DoD (DTXSID70381090)


title: R. subcapitata, 24 h exposure, FC8DoD, sample1


title: 637C_001_ADT_CZI-IA10466385

description:
Library name: 637C_001_ADT_CZI-IA10466385_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

value: FALSE

value: fresh

tag: test results.ebv

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: mononuclear cell


title: R. subcapitata, 24 h exposure, DMSO, sample24

tag: tissue

value: DMSO (DTXSID2021735)


title: 637C_001_ADT_CZI-IA10466383

description:
Library name: 637C_001_ADT_CZI-IA10466383_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

value: 50-54 years

value: male

tag: ethnicity

value: Unknown

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: former, 3 years since cessation

tag: death type

value: CITE 10x 5' v2

tag: raw matrix_assays

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 637C_001_ADT_CZI-IA10466384

description:
Library name: 637C_001_ADT_CZI-IA10466384_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: dev stage

tag: Sex

value: Cambridge Biorepository for Translational Medicine

tag: suspension treatment_summary

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

tag: test results.cmv

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, DMSO, sample23

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, DMSO, sample22


title: 637C_001_ADT_CZI-IA10466380

description:
Library name: 637C_001_ADT_CZI-IA10466380_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

value: adult stage

tag: ethnicity

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: test results.ebv

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys


title: 637C_001_ADT_CZI-IA10466381

description:
Library name: 637C_001_ADT_CZI-IA10466381_lib
CITE-seq of mononuclear cells from pooled:lung,jejunum lamina propria

tag: donor id

tag: age

value: 50-54 years

tag: dev stage

tag: Sex

value: male

value: Unknown

value: pooled:lung,jejunum lamina propria

tag: smoking history

tag: death type

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, PF4OPeA, sample21

tag: tissue

tag: developmental stage

tag: treatment

value: PF4OPeA (DTXSID70191136)


title: R. subcapitata, 24 h exposure, PF4OPeA, sample17


title: R. subcapitata, 24 h exposure, PF4OPeA, sample18


title: 621B_001_GEX_CZI-IA10244335

description:
Library name: 621B_001_GEX_CZI-IA10244335_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,jejunum lamina propria

tag: ethnicity

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: never

value: brain stem death

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

value: negative

tag: assay type

value: scRNA-seq


title: 637C_001_ADT_CZI-IA10466378

description:
Library name: 637C_001_ADT_CZI-IA10466378_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: dev stage

value: adult stage

tag: Sex

tag: smoking history

value: former, 3 years since cessation

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: 637C_001_ADT_CZI-IA10466377

description:
Library name: 637C_001_ADT_CZI-IA10466377_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

value: 50-54 years

value: male

tag: ethnicity

value: Unknown

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

value: positive

value: UMI

tag: enriched cell_type

value: mononuclear cell

tag: antibodies/tags


title: 621B_001_GEX_CZI-IA10244336

description:
Library name: 621B_001_GEX_CZI-IA10244336_lib
scRNA-seq of mononuclear cells from skin of body

tag: donor id

tag: age

value: adult stage

value: skin of body

value: Cambridge Biorepository for Translational Medicine

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: never

value: brain stem death

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

value: negative

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PF4OPeA, sample15

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PF4OPeA (DTXSID70191136)


title: 621B_001_GEX_CZI-IA10244333

description:
Library name: 621B_001_GEX_CZI-IA10244333_lib
scRNA-seq of mononuclear cells from pooled:blood,bone marrow

source_name: pooled:blood,bone marrow

value: 50-54 years

tag: dev stage

tag: Sex

value: male

tag: ethnicity

value: Unknown

tag: tissue

value: pooled:blood,bone marrow

tag: smoking history

tag: death type

value: intracranial hemorrhage

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq


title: 621B_001_GEX_CZI-IA10244332

description:
Library name: 621B_001_GEX_CZI-IA10244332_lib
scRNA-seq of mononuclear cells from pooled:spleen,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: cause of_death

value: positive

value: UMI

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, PF4OPeA, sample19

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PF4OPeA, sample16


title: R. subcapitata, 24 h exposure, PF4OPeA, sample9


title: R. subcapitata, 24 h exposure, PF4OPeA, sample13


title: R. subcapitata, 24 h exposure, PF4OPeA, sample14


title: 621B_001_GEX_CZI-IA10244334

description:
Library name: 621B_001_GEX_CZI-IA10244334_lib
scRNA-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: dev stage

tag: Sex

tag: ethnicity

value: pooled:spleen,thoracic lymph node

value: Cambridge Biorepository for Translational Medicine

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: smoking history

value: never

tag: death type

value: brain stem death

tag: test results.ebv

tag: test results.cmv

value: negative

tag: library protocol

tag: assay type

value: scRNA-seq


title: 621B_001_ADT_CZI-IA10244437

description:
Library name: 621B_001_ADT_CZI-IA10244437_lib
CITE-seq of mononuclear cells from pooled:jejunal epithelium,jejunum lamina propria

tag: donor id

tag: age

value: 50-54 years

value: male

value: Unknown

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 621B_001_ADT_CZI-IA10244436

description:
Library name: 621B_001_ADT_CZI-IA10244436_lib
CITE-seq of mononuclear cells from pooled:spleen,thoracic lymph node

tag: dev stage

value: adult stage

tag: Sex

tag: ethnicity

tag: tissue

tag: suspension treatment_summary

value: FALSE

tag: sample preservation_method

value: fresh

tag: cause of_death

value: intracranial hemorrhage

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: 621B_001_GEX_CZI-IA10244331

description:
Library name: 621B_001_GEX_CZI-IA10244331_lib
scRNA-seq of mononuclear cells from pooled:blood,bone marrow

tag: donor id

tag: age

value: pooled:blood,bone marrow

value: Cambridge Biorepository for Translational Medicine

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: test results.ebv

value: positive

tag: test results.cmv

tag: library protocol

value: UMI

value: mononuclear cell

tag: assay type


title: 621B_001_ADT_CZI-IA10244438

description:
Library name: 621B_001_ADT_CZI-IA10244438_lib
CITE-seq of mononuclear cells from skin of body

value: 50-54 years

tag: dev stage

value: skin of body

tag: source

tag: suspension cell_depletion_factors

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

value: never

value: brain stem death

value: negative

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, PF4OPeA, sample10

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PF4OPeA (DTXSID70191136)


title: R. subcapitata, 24 h exposure, PF4OPeA, sample11


title: 637C_001_ADT_CZI-IA10466382

description:
Library name: 637C_001_ADT_CZI-IA10466382_lib
CITE-seq of mononuclear cells from jejunal epithelium

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Unknown

value: jejunal epithelium

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: former, 3 years since cessation

tag: death type

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

value: CITE 10x 5' v2

tag: enriched cell_type

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PF4OPeA, sample7


title: R. subcapitata, 24 h exposure, PF4OPeA, sample8


title: 621B_001_ADT_CZI-IA10244434

description:
Library name: 621B_001_ADT_CZI-IA10244434_lib
CITE-seq of mononuclear cells from pooled:spleen,mesenteric lymph node,thoracic lymph node

value: 50-54 years

tag: dev stage

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: never

value: brain stem death

tag: test results.ebv

value: positive

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, PF4OPeA, sample20

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PF4OPeA (DTXSID70191136)


title: 637C_001_ADT_CZI-IA10466379

description:
Library name: 637C_001_ADT_CZI-IA10466379_lib
CITE-seq of mononuclear cells from pooled:blood,spleen,liver,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Unknown

value: FALSE

tag: sample preservation_method

value: fresh

value: former, 3 years since cessation

value: circulatory death

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, PF4OPeA, sample12


title: R. subcapitata, 24 h exposure, PF4OPeA, sample5


title: R. subcapitata, 24 h exposure, PF4OPeA, sample4


title: 591C_003_GEX_CZI-IA10034927

description:
Library name: 591C_003_GEX_CZI-IA10034927_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 35-39 years

tag: dev stage

value: European

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: smoking history

value: never

tag: death type

tag: cause of_death

value: intracranial hemorrhage

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: enriched cell_type

value: scRNA-seq


title: 591C_003_GEX_CZI-IA10034926

description:
Library name: 591C_003_GEX_CZI-IA10034926_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: tissue

tag: sample preservation_method

tag: test results.cmv

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: 591C_003_GEX_CZI-IA10034928

description:
Library name: 591C_003_GEX_CZI-IA10034928_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: smoking history

tag: death type

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PF4OPeA, sample3

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PF4OPeA (DTXSID70191136)


title: R. subcapitata, 24 h exposure, PF4OPeA, sample1


title: 621B_001_ADT_CZI-IA10244435

description:
Library name: 621B_001_ADT_CZI-IA10244435_lib
CITE-seq of mononuclear cells from pooled:blood,bone marrow

tag: donor id

tag: age

value: 50-54 years

tag: Sex

tag: ethnicity

value: Unknown

value: pooled:blood,bone marrow

value: Cambridge Biorepository for Translational Medicine

tag: sample preservation_method

value: fresh

value: brain stem death

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: library protocol

value: CITE 10x 5' v2

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PF4OPeA, sample6


title: 591C_003_GEX_CZI-IA10034921

description:
Library name: 591C_003_GEX_CZI-IA10034921_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 35-39 years

tag: dev stage

value: European

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: smoking history

value: never

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: body mass_index

tag: height

value: negative

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FHxSA, sample21

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: R. subcapitata, 24 h exposure, DMSO, sample21

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, DMSO, sample20


title: 621B_001_ADT_CZI-IA10244433

description:
Library name: 621B_001_ADT_CZI-IA10244433_lib
CITE-seq of mononuclear cells from pooled:blood,bone marrow

tag: donor id

tag: age

value: 50-54 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Unknown

value: pooled:blood,bone marrow

value: Cambridge Biorepository for Translational Medicine

value: FALSE

tag: sample preservation_method

value: fresh

value: brain stem death

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

value: CITE-seq


title: R. subcapitata, 24 h exposure, FHxSA, sample20


title: 591C_003_GEX_CZI-IA10034924

description:
Library name: 591C_003_GEX_CZI-IA10034924_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 35-39 years

tag: dev stage

value: European

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: smoking history

value: never

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: body mass_index

tag: height

value: negative

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: 591C_003_GEX_CZI-IA10034923

description:
Library name: 591C_003_GEX_CZI-IA10034923_lib
scRNA-seq of mononuclear cells from jejunal epithelium

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

tag: tissue

value: jejunal epithelium

value: Cambridge Biorepository for Translational Medicine

value: FALSE

tag: sample preservation_method

tag: cause of_death

tag: test results.ebv

tag: assay type


title: R. subcapitata, 24 h exposure, FHxSA, sample19

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: 591C_003_GEX_CZI-IA10034922

description:
Library name: 591C_003_GEX_CZI-IA10034922_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 35-39 years

tag: dev stage

value: European

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: fresh

tag: smoking history

value: never

tag: test results.cmv

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell


title: 591C_003_ADT_CZI-IA10034944

description:
Library name: 591C_003_ADT_CZI-IA10034944_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: tissue

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: sample preservation_method

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: body mass_index

tag: height

value: negative

value: positive

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 591C_003_ADT_CZI-IA10034945

description:
Library name: 591C_003_ADT_CZI-IA10034945_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: dev stage

value: adult stage

value: male

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: smoking history

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: library protocol

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, FHxSA, sample17

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: R. subcapitata, 24 h exposure, FHxSA, sample18


title: R. subcapitata, 24 h exposure, PF4OPeA, sample2

value: PF4OPeA (DTXSID70191136)


title: 591C_003_GEX_CZI-IA10034920

description:
Library name: 591C_003_GEX_CZI-IA10034920_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 35-39 years

tag: Sex

tag: ethnicity

value: European

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

value: fresh

value: never

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: body mass_index

tag: height

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

value: scRNA-seq


title: 591C_003_ADT_CZI-IA10034941

description:
Library name: 591C_003_ADT_CZI-IA10034941_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: smoking history

tag: cause of_death

tag: test results.ebv

value: negative

tag: test results.cmv

value: positive

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FHxSA, sample16

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: 591C_003_ADT_CZI-IA10034940

description:
Library name: 591C_003_ADT_CZI-IA10034940_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: 35-39 years

tag: Sex

tag: ethnicity

value: European

value: Cambridge Biorepository for Translational Medicine

value: FALSE

tag: sample preservation_method

value: fresh

tag: death type

tag: body mass_index

tag: height

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, DMSO, sample19

value: DMSO (DTXSID2021735)


title: 591C_003_ADT_CZI-IA10034938

description:
Library name: 591C_003_ADT_CZI-IA10034938_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: dev stage

value: adult stage

value: male

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: smoking history

value: never

value: circulatory death

tag: cause of_death

value: intracranial hemorrhage

tag: test results.ebv

value: negative

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

tag: enriched cell_type

value: mononuclear cell


title: 591C_003_GEX_CZI-IA10034925

description:
Library name: 591C_003_GEX_CZI-IA10034925_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: tissue

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: death type

value: positive

tag: raw matrix_value_units

value: UMI

value: scRNA-seq


title: 591C_003_ADT_CZI-IA10034939

description:
Library name: 591C_003_ADT_CZI-IA10034939_lib
CITE-seq of mononuclear cells from jejunal epithelium

value: 35-39 years

tag: dev stage

value: European

value: jejunal epithelium

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: body mass_index

tag: height

value: CITE 10x 5' v2

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, FHxSA, sample15

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: R. subcapitata, 24 h exposure, FHxSA, sample13

tag: tissue


title: R. subcapitata, 24 h exposure, FHxSA, sample14


title: R. subcapitata, 24 h exposure, FHxSA, sample12


title: 591C_003_ADT_CZI-IA10034937

description:
Library name: 591C_003_ADT_CZI-IA10034937_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: Cambridge Biorepository for Translational Medicine

value: FALSE

value: fresh

tag: smoking history

value: never

tag: cause of_death

tag: test results.ebv

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: 591C_003_ADT_CZI-IA10034943

description:
Library name: 591C_003_ADT_CZI-IA10034943_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

value: 35-39 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

tag: sample preservation_method

tag: death type

value: circulatory death

value: intracranial hemorrhage

tag: body mass_index

tag: height

value: negative

value: positive

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: mononuclear cell


title: 591C_003_ADT_CZI-IA10034936

description:
Library name: 591C_003_ADT_CZI-IA10034936_lib
CITE-seq of mononuclear cells from pooled:lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: European

tag: tissue

tag: smoking history

tag: cause of_death

tag: test results.ebv

value: CITE 10x 5' v2

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: 583B_002_HTO_CZI-IA9924373

description:
Library name: 583B_002_HTO_CZI-IA9924373_lib
hashtag of mononuclear cells from pooled:lung,spleen,thoracic lymph node

source_name: pooled:lung,spleen,thoracic lymph node

value: 25-30 years

tag: dev stage

value: adult stage

value: male

value: pooled:lung,spleen,thoracic lymph node

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: current, 10 years

value: brain stem death

tag: test results.cmv

tag: library protocol

value: HTO 10x 5' v2 TSC

tag: raw matrix_genome_annotation

tag: enriched cell_type


title: 583B_002_HTO_CZI-IA9924374

description:
Library name: 583B_002_HTO_CZI-IA9924374_lib
hashtag of mononuclear cells from pooled:blood,bone marrow

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: pooled:blood,bone marrow

value: fresh

tag: death type

value: intracranial hemorrhage

tag: body mass_index

tag: height

value: negative

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq


title: 583B_002_HTO_CZI-IA9924376

description:
Library name: 583B_002_HTO_CZI-IA9924376_lib
hashtag of mononuclear cells from pooled:blood,bone marrow

tag: dev stage

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: cause of_death

tag: test results.ebv

value: positive

value: UMI

value: mononuclear cell

tag: assay type

value: CITE-seq

tag: antibodies/tags


title: 583B_002_GEX_CZI-IA9924327

description:
Library name: 583B_002_GEX_CZI-IA9924327_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,thoracic lymph node

tag: donor id

tag: age

value: 25-30 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: pooled:lung,spleen,thoracic lymph node

value: Cambridge Biorepository for Translational Medicine

tag: living at_sample_collection

tag: sample preservation_method

tag: death type

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, FHxSA, sample6

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: 583B_002_GEX_CZI-IA9924326

description:
Library name: 583B_002_GEX_CZI-IA9924326_lib
scRNA-seq of mononuclear cells from pooled:blood,bone marrow

tag: dev stage

value: pooled:blood,bone marrow

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

value: fresh

tag: smoking history

value: current, 10 years

value: brain stem death

tag: cause of_death

value: intracranial hemorrhage

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, FHxSA, sample7


title: R. subcapitata, 24 h exposure, FHxSA, sample8


title: R. subcapitata, 24 h exposure, FHxSA, sample9


title: R. subcapitata, 24 h exposure, FHxSA, sample4


title: R. subcapitata, 24 h exposure, FHxSA, sample10


title: R. subcapitata, 24 h exposure, FHxSA, sample3


title: R. subcapitata, 24 h exposure, FHxSA, sample5


title: 583B_002_GEX_CZI-IA9924325

description:
Library name: 583B_002_GEX_CZI-IA9924325_lib
scRNA-seq of mononuclear cells from pooled:lung,spleen,thoracic lymph node

tag: donor id

tag: age

value: 25-30 years

tag: Sex

tag: ethnicity

value: European

tag: living at_sample_collection

tag: sample preservation_method

tag: death type

tag: test results.cmv

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type


title: 582C_001_HTO_CZI-IA9924372

description:
Library name: 582C_001_HTO_CZI-IA9924372_lib
hashtag of mononuclear cells from skin of body

value: 55-60 years

tag: dev stage

value: adult stage

value: female

tag: tissue

value: skin of body

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: smoking history

value: never

value: circulatory death

tag: cause of_death

value: brain hypoxia - ischemia

tag: body mass_index

value: HTO 10x 5' v2 TSC

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, FHxSA, sample2

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: 582C_001_HTO_CZI-IA9924371

description:
Library name: 582C_001_HTO_CZI-IA9924371_lib
hashtag of mononuclear cells from pooled:jejunal epithelium,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: European

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: height

tag: test results.ebv

value: negative

value: positive

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays


title: 583B_002_GEX_CZI-IA9924328

description:
Library name: 583B_002_GEX_CZI-IA9924328_lib
scRNA-seq of mononuclear cells from pooled:blood,bone marrow

value: 25-30 years

tag: dev stage

value: adult stage

value: male

tag: tissue

value: pooled:blood,bone marrow

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

value: current, 10 years

tag: death type

value: brain stem death

tag: cause of_death

value: intracranial hemorrhage

tag: body mass_index

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: snRNA-seq, CITE-seq

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, DMSO, sample18

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: DMSO (DTXSID2021735)


title: 582C_001_HTO_CZI-IA9924369

description:
Library name: 582C_001_HTO_CZI-IA9924369_lib
hashtag of mononuclear cells from pooled:jejunal epithelium,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

value: 55-60 years

tag: Sex

value: female

tag: ethnicity

value: European

value: Cambridge Biorepository for Translational Medicine

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

value: never

value: circulatory death

value: brain hypoxia - ischemia

tag: height

tag: test results.ebv

value: negative

value: HTO 10x 5' v2 TSC

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags


title: 582C_001_HTO_CZI-IA9924370

description:
Library name: 582C_001_HTO_CZI-IA9924370_lib
hashtag of mononuclear cells from pooled:spleen,mesenteric lymph node

source_name: pooled:spleen,mesenteric lymph node

tag: dev stage

value: adult stage

tag: tissue

value: pooled:spleen,mesenteric lymph node

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: smoking history

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

value: positive

tag: library protocol

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: R. subcapitata, 24 h exposure, FHxSA, sample11

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: FHxSA (DTXSID50469320)


title: R. subcapitata, 24 h exposure, FHxSA, sample1


title: R. subcapitata, 24 h exposure, DMSO, sample17

value: DMSO (DTXSID2021735)


title: 582C_001_HTO_CZI-IA9924368

description:
Library name: 582C_001_HTO_CZI-IA9924368_lib
hashtag of mononuclear cells from pooled:spleen,mesenteric lymph node

tag: donor id

tag: age

value: 55-60 years

tag: Sex

value: female

tag: ethnicity

value: European

value: Cambridge Biorepository for Translational Medicine

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

value: never

value: circulatory death

tag: height

tag: test results.ebv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: R. subcapitata, 24 h exposure, DMSO, sample16

tag: tissue


title: 582C_001_GEX_CZI-IA9924324

description:
Library name: 582C_001_GEX_CZI-IA9924324_lib
scRNA-seq of mononuclear cells from skin of body

tag: dev stage

value: adult stage

value: skin of body

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: cause of_death

value: brain hypoxia - ischemia

tag: body mass_index

value: negative

tag: test results.cmv

value: positive

tag: library protocol

tag: enriched cell_type

value: scRNA-seq


title: 583B_002_HTO_CZI-IA9924375

description:
Library name: 583B_002_HTO_CZI-IA9924375_lib
hashtag of mononuclear cells from pooled:lung,spleen,thoracic lymph node

tag: donor id

tag: age

value: 25-30 years

tag: Sex

value: male

tag: ethnicity

value: pooled:lung,spleen,thoracic lymph node

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: living at_sample_collection

tag: sample preservation_method

value: current, 10 years

value: brain stem death

value: intracranial hemorrhage

tag: height

tag: test results.ebv

value: HTO 10x 5' v2 TSC

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, 4:2FTS, sample21

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4:2FTS, sample20


title: R. subcapitata, 24 h exposure, 4:2FTS, sample19


title: 582C_001_GEX_CZI-IA9924323

description:
Library name: 582C_001_GEX_CZI-IA9924323_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,thoracic lymph node,jejunum lamina propria

value: 55-60 years

tag: dev stage

value: adult stage

value: female

value: European

tag: source

value: Cambridge Biorepository for Translational Medicine

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

value: fresh

tag: smoking history

value: never

tag: death type

value: circulatory death

tag: cause of_death

value: brain hypoxia - ischemia

tag: body mass_index

value: negative

tag: test results.cmv

value: positive

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: 582C_001_GEX_CZI-IA9924321

description:
Library name: 582C_001_GEX_CZI-IA9924321_lib
scRNA-seq of mononuclear cells from pooled:jejunal epithelium,thoracic lymph node,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: sample preservation_method

tag: height

tag: test results.ebv

tag: library protocol

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: 582C_001_GEX_CZI-IA9924322

description:
Library name: 582C_001_GEX_CZI-IA9924322_lib
scRNA-seq of mononuclear cells from pooled:spleen,mesenteric lymph node

tag: dev stage

tag: tissue

value: pooled:spleen,mesenteric lymph node

tag: source

tag: suspension cell_depletion_factors

tag: suspension treatment_summary

value: 1.34 nM of phorbol 13-acetate 12-myristate and ionomycin and 8.1 nM of ionomycin for 2 hours

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: cause of_death

tag: body mass_index

value: mononuclear cell


title: 582C_001_GEX_CZI-IA9924320

description:
Library name: 582C_001_GEX_CZI-IA9924320_lib
scRNA-seq of mononuclear cells from pooled:spleen,mesenteric lymph node

tag: donor id

tag: age

value: 55-60 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: living at_sample_collection

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample16

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4:2FTS, sample17


title: D570_001_GEX_CZINY-0727

description:
Library name: D570_001_GEX_CZINY-0727_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 73 years

tag: dev stage

value: male

value: European

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 60 pack-years

value: brain stem death

value: cerebrovascular/stroke

tag: height

tag: test results.ebv

tag: test results.blood_sugar

value: 267 mg/dL

tag: library protocol

tag: raw matrix_assays

tag: enriched cell_type


title: D570_001_GEX_CZINY-0725

description:
Library name: D570_001_GEX_CZINY-0725_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

value: positive

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: R. subcapitata, 24 h exposure, 4:2FTS, sample14

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: D570_001_GEX_CZINY-0726

description:
Library name: D570_001_GEX_CZINY-0726_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_assays

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample15

value: Exponential Growth Stage


title: D570_001_GEX_CZINY-0724

description:
Library name: D570_001_GEX_CZINY-0724_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 73 years

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample13

tag: tissue

tag: developmental stage

tag: treatment


title: D570_001_GEX_CZINY-0722

description:
Library name: D570_001_GEX_CZINY-0722_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D570_001_GEX_CZINY-0721

description:
Library name: D570_001_GEX_CZINY-0721_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

value: current, 60 pack-years

tag: death type

value: brain stem death

tag: cause of_death

value: cerebrovascular/stroke

tag: body mass_index

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample9

tag: tissue

tag: developmental stage

tag: treatment


title: D570_001_GEX_CZINY-0719

description:
Library name: D570_001_GEX_CZINY-0719_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

value: positive

tag: test results.blood_sugar

value: 267 mg/dL

tag: library protocol

value: UMI

tag: raw matrix_feature_keys

tag: enriched cell_type


title: D570_001_GEX_CZINY-0718

description:
Library name: D570_001_GEX_CZINY-0718_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: R. subcapitata, 24 h exposure, 4:2FTS, sample12

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4:2FTS, sample11

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, 4:2FTS, sample10


title: D570_001_GEX_CZINY-0720

description:
Library name: D570_001_GEX_CZINY-0720_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 73 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

value: mononuclear cell

tag: assay type


title: D570_001_GEX_CZINY-0717

description:
Library name: D570_001_GEX_CZINY-0717_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: male

tag: ethnicity

value: European

value: LiveOnNY

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample6

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4:2FTS, sample8


title: R. subcapitata, 24 h exposure, 4:2FTS, sample5


title: D570_001_GEX_CZINY-0716

description:
Library name: D570_001_GEX_CZINY-0716_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 60 pack-years

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D570_001_GEX_CZINY-0715

description:
Library name: D570_001_GEX_CZINY-0715_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

value: brain stem death

tag: cause of_death

value: cerebrovascular/stroke

tag: body mass_index

value: positive

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type


title: R. subcapitata, 24 h exposure, 4:2FTS, sample18

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4:2FTS, sample4


title: D570_001_ADT_CZINY-0710

description:
Library name: D570_001_ADT_CZINY-0710_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

value: 267 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: enriched cell_type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, DMSO, sample15

value: whole body

value: Exponential Growth Stage

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, DMSO, sample14


title: D570_001_ADT_CZINY-0708

description:
Library name: D570_001_ADT_CZINY-0708_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 73 years

value: adult stage

tag: Sex

value: male

tag: ethnicity

value: European

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: R. subcapitata, 24 h exposure, 4:2FTS, sample1

tag: tissue

tag: developmental stage

tag: treatment


title: D570_001_GEX_CZINY-0713

description:
Library name: D570_001_GEX_CZINY-0713_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: current, 60 pack-years

value: brain stem death

value: cerebrovascular/stroke

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, 4:2FTS, sample2


title: R. subcapitata, 24 h exposure, 4:2FTS, sample7


title: R. subcapitata, 24 h exposure, DMSO, sample13


title: R. subcapitata, 24 h exposure, PFTP, sample20

value: PFTP (DTXSID70379295)


title: D570_001_ADT_CZINY-0705

description:
Library name: D570_001_ADT_CZINY-0705_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

value: positive

tag: test results.cmv

value: 267 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D570_001_ADT_CZINY-0706

description:
Library name: D570_001_ADT_CZINY-0706_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 73 years

tag: dev stage

value: adult stage

value: male

value: European

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

value: snRNA-seq, CITE-seq


title: R. subcapitata, 24 h exposure, PFTP, sample19

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment