title: D533_001_GEX_CZINY-0482

description:
Library name: D533_001_GEX_CZINY-0482_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

value: never

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

value: 132 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTrDA, sample10

status: Public on Jun 06 2025

type: SRA

city: Duluth

first: Peter

last: Schumann

state: MN

address: 6201 Congdon Blvd

country: USA

institute: United States Environmental Protection Agency

library_source: transcriptomic

data_processing:
Sequencing was performed in a 1x100bp single read format using Illumina NovaSeq SP flow cells (Illumina, Inc., San Diego, CA, USA).
The R. subcapitata reference genome (GCA_003203535.1) was indexed using STAR v2.7.10a (Dobin et al., 2012) using the following parameters: genomeSAindexNbases = 11, sjdbOverhang = 99, and sjdbGTFfeatureExon = gene.
The raw, 1x100bp single end FASTQ sequence files were trimmed, quality filtered (Phred score <15), and had UMIs and adapter sequences removed after deduplication using fastp v0.23.2 (Chen 2023, Chen et al., 2018).
Quality reads were aligned and mapped to the indexed reference genome using STAR. The resulting alignment files were sorted by coordinates and indexed by sample using Samtools v1.15.1 (Danecek et al., 2021).
Aligned reads were quantified with respect to gene features using the “featureCounts” program (v2.0.6) of the subread package (Liao et al., 2014). A 1,400 bp extension was added to each read at the 5’ end as most reads aligned at unannotated 3’ untranslated regions (UTR) of the genome and gene features with the largest overlap were counted. The quantified reads were organized into separate (tab-delimited) count matrix files for each chemical treatment group where columns represented samples and rows represented genes.
Assembly: GCA_003203535.1
Supplementary files format and content: count matrices with rows as gene features and columns as samples

molecule: polyA RNA

organism: Raphidocelis subcapitata

source_name: whole body

growth_protocol: reared in Woods Hole MBL media at 24°C with constant light (~250 µmol/m2/s)

extract_protocol:
RNA was extracted from pooled homogenates (Plant/Fungi Total RNA Purification kits, #31900, Norgen Biotek, Ontario, Canada) with a protocol slightly modified from the manufacturer’s instructions.  First, the algae were centrifuged, and the supernatant was aspirated.  Glass beads (0.5 mm) were added to each well and the plate went through five cycles of freezing with liquid nitrogen and bead milling for 2 minutes.  Next, 400 µl of kit Buffer C was added to each well and then the manufacturer’s procedure was followed.
Libraries were prepared using the Lexogen QuantSeq 3’ mRNA-Seq V2 Library Prep Kit with UDI (Unique Dual Index) and QuantSeq UMI (Unique Molecular Identifier) module with PhiX spike-in making up ~5% of the total reads in each lane. The UMI module (https://faqs.lexogen.com/faq/quantseq-umi-module) added a random, 6nt sequence to the start of each read 1 (R1), followed by a constant, 4nt (TATA) spacer. Preparation followed manufacturer’s recommendations. Completed libraries were quality checked and quantified using Qubit dsDNA HS and Agilent 4200 TapeStation HS DNA1000 assays. Libraries were pooled in equimolar amounts and quantified using the Invitrogen Collibri Quantification qPCR kit.

treatment_protocol: Using 96-well plates, two PFAS per exposure were serially diluted in algae media (Woods Hole MBL media) with a Biomek i5 liquid handler to final nominal exposure concentrations of 100, 32, 10, 3.2, 1, 0.3, 0.1, and 0.03 uM with five replicates per concentration of each PFAS.  There were also 8 control replicates (no PFAS) and two concentrations of CuSO4 (0.75 and 1.5 mM) with three replicates each as positive controls.  All PFAS and control replicates were arranged on a 96-well plate in a predetermined systematic layout such that each concentration was distributed to equal numbers of edge and interior wells.  All wells contained 0.33% solvent.  Prior to exposure, the cells per ml of a R. subcapitata culture in exponential growth was adjusted to approximately 5 x 10^6 cells/ml.  Each well of exposure plates was loaded with 800 µl of algal suspension.  All assays were conducted in four replicate, 96-well plates using deep-well plates sealed with optically clear adhesive covers.  Three of the replicate plates were randomly designated for transcriptomic analysis while the fourth plate was used for phenotypic measurements.  Algae were kept in suspension during incubation by shaking using a temperature controlled orbital shaker.

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFTrDA, sample16


title: D529_001_GEX_CZINY-0416

city: Palo Alto

first: Lattice

last: Data Coordination

state: CA

address: 3165 Porter Drive

department: Genetics

institute: Stanford University

description:
Library name: D529_001_GEX_CZINY-0416_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

library_source: transcriptomic single cell

data_processing:
raw_matrix_normalized:False; raw_matrix_value_scale:linear; raw_matrix_background_barcodes_included:False
Assembly: GRCh38, GENCODE32
Supplementary files format and content: h5ad, count matrix

organism: Homo sapiens

extract_protocol:
Tissue was obtained from deceased organ donors at the time of organ acquisition for clinical transplantation through an approved protocol and material transfer agreement via LiveOnNY, the organ procurement organization for the New York metropolitan area and through the Cambridge Biorepository for Translational Medicine. Each tissue was subjected to a tissue-specific protocol to maximize mononuclear cell (MNC) recovery and viability across a diversity of sites. A series of detailed protocols are available on protocols.io (https://dx.doi.org/10.17504/protocols.io.bwrjpd4n, https://dx.doi.org/10.17504/protocols.io.bwr9pd96, https://dx.doi.org/10.17504/protocols.io.bwsapeae, https://dx.doi.org/10.17504/protocols.io.bwq4pdyw, https://dx.doi.org/10.17504/protocols.io.bwq7pdzn, https://dx.doi.org/10.17504/protocols.io.bwr6pd9e, https://dx.doi.org/10.17504/protocols.io.bz4qp8vw). Each individual tissue single cell suspension (500,000 or 1,000,000 cells) was hash tagged to allow pooling of tissue samples. CITE-seq labeling used either a TotalSeq-C cocktail containing 137 protein targets (10x 5’ libraries) or TotalSeq-A cocktail containing 277 protein targets (10x 3’ libraries).
For scRNA-seq experiments, single cells were loaded onto the channels of a Chromium chip (10x Genomics). cDNA synthesis, amplification, and sequencing libraries were generated using either the Single Cell 5′ Reagent (v1 and v2) or 3′ Reagent (v3) Kits. TCRαβ and BCR paired VDJ libraries were prepared from samples made with the 5′ Reagent kit. All libraries were sequenced on either an Illumina NextSeq 500/550 or NovaSeq 6000 instrument.

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

value: anoxia

value: negative

tag: test results.blood_sugar

value: 151 mg/dL

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: D533_001_ADT_CZINY-0465

description:
Library name: D533_001_ADT_CZINY-0465_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

library_source: other

molecule: other

value: 75 years

tag: dev stage

value: male

value: Asian

tag: source

tag: suspension cell_depletion_factors

value: never

tag: cause of_death

value: Cerebrovascular/stroke

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

value: 132 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFTrDA, sample7

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D529_001_GEX_CZINY-0415

description:
Library name: D529_001_GEX_CZINY-0415_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

value: anoxia

value: negative

tag: test results.blood_sugar

value: 151 mg/dL

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTrDA, sample8


title: R. subcapitata, 24 h exposure, PFTrDA, sample4


title: D529_001_GEX_CZINY-0412

description:
Library name: D529_001_GEX_CZINY-0412_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell


title: D529_001_GEX_CZINY-0411

description:
Library name: D529_001_GEX_CZINY-0411_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

tag: ethnicity

tag: tissue

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type


title: D529_001_GEX_CZINY-0413

description:
Library name: D529_001_GEX_CZINY-0413_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

value: Hispanic or Latin American

tag: source

tag: suspension cell_depletion_factors

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.blood_sugar

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type


title: D529_001_GEX_CZINY-0414

description:
Library name: D529_001_GEX_CZINY-0414_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: LiveOnNY

value: FALSE

tag: test results.ebv

tag: test results.cmv

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: enriched cell_type


title: D529_001_GEX_CZINY-0409

description:
Library name: D529_001_GEX_CZINY-0409_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

value: brain stem death

tag: cause of_death


title: R. subcapitata, 24 h exposure, PFTrDA, sample6

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, FC10diol, sample1

value: FC10diol (DTXSID50369896)


title: R. subcapitata, 24 h exposure, PFTrDA, sample1


title: D529_001_GEX_CZINY-0408

description:
Library name: D529_001_GEX_CZINY-0408_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: never

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: test results.cmv

tag: test results.blood_sugar

value: 151 mg/dL

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTrDA, sample2

tag: tissue


title: R. subcapitata, 24 h exposure, DMSO, sample6

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, PFTrDA, sample3


title: D529_001_GEX_CZINY-0407

description:
Library name: D529_001_GEX_CZINY-0407_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 68 years

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, DMSO, sample5

tag: developmental stage

tag: treatment


title: D529_001_GEX_CZINY-0406

description:
Library name: D529_001_GEX_CZINY-0406_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: female

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

value: FALSE

value: fresh

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, PFTrDA, sample9

tag: tissue

value: whole body

value: Exponential Growth Stage


title: D533_001_ADT_CZINY-0466

description:
Library name: D533_001_ADT_CZINY-0466_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,jejunum lamina propria

value: 75 years

tag: dev stage

value: male

value: Asian

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

value: never

tag: death type

value: brain stem death

value: Cerebrovascular/stroke

value: 132 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D529_001_GEX_CZINY-0405

description:
Library name: D529_001_GEX_CZINY-0405_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: test results.cmv

value: positive

value: 151 mg/dL

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

value: scRNA-seq


title: R. subcapitata, 24 h exposure, PFTrDA, sample5

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFOS, sample21

value: PFOS (DTXSID8037706)


title: D529_001_GEX_CZINY-0410

description:
Library name: D529_001_GEX_CZINY-0410_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

value: brain stem death

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: D529_001_GEX_CZINY-0403

description:
Library name: D529_001_GEX_CZINY-0403_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: test results.cmv

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, PFOS, sample20

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFOS, sample19


title: R. subcapitata, 24 h exposure, PFOS, sample18


title: D529_001_GEX_CZINY-0401

description:
Library name: D529_001_GEX_CZINY-0401_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: positive

tag: test results.blood_sugar

value: 151 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq


title: D529_001_ADT_CZINY-0432

description:
Library name: D529_001_ADT_CZINY-0432_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFOS, sample17

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFOS (DTXSID8037706)


title: R. subcapitata, 24 h exposure, PFOS, sample16


title: R. subcapitata, 24 h exposure, PFOS, sample15


title: D529_001_ADT_CZINY-0430

description:
Library name: D529_001_ADT_CZINY-0430_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 68 years

tag: dev stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

value: brain stem death

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type


title: D529_001_ADT_CZINY-0429

description:
Library name: D529_001_ADT_CZINY-0429_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: test results.cmv

value: positive

value: 151 mg/dL

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type


title: D529_001_ADT_CZINY-0428

description:
Library name: D529_001_ADT_CZINY-0428_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

tag: test results.blood_sugar

value: CITE 10x 5' v2

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFOS, sample13

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFOS (DTXSID8037706)


title: R. subcapitata, 24 h exposure, PFOS, sample14


title: D529_001_ADT_CZINY-0431

description:
Library name: D529_001_ADT_CZINY-0431_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

value: FALSE

value: fresh

value: never

value: brain stem death

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type


title: D529_001_ADT_CZINY-0427

description:
Library name: D529_001_ADT_CZINY-0427_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

value: female

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: anoxia

value: negative

tag: test results.cmv

value: positive

value: 151 mg/dL

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type


title: D529_001_ADT_CZINY-0426

description:
Library name: D529_001_ADT_CZINY-0426_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.blood_sugar

value: CITE 10x 5' v2

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, DMSO, sample4

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, PFOS, sample11

value: PFOS (DTXSID8037706)


title: R. subcapitata, 24 h exposure, PFOS, sample10


title: D534_001_GEX_CZINY-0523

description:
Library name: D534_001_GEX_CZINY-0523_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 33 years

tag: dev stage

value: adult stage

value: male

value: European

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

value: brain stem death

tag: test results.cmv

value: 161 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: assay type

value: scRNA-seq


title: D529_001_ADT_CZINY-0425

description:
Library name: D529_001_ADT_CZINY-0425_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

tag: Sex

value: female

tag: ethnicity

value: Hispanic or Latin American

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

value: positive

tag: test results.blood_sugar

value: 151 mg/dL

value: CITE 10x 5' v2

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags


title: D529_001_GEX_CZINY-0404

description:
Library name: D529_001_GEX_CZINY-0404_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.cmv

tag: library protocol


title: R. subcapitata, 24 h exposure, PFOS, sample7

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: PFOS (DTXSID8037706)


title: D529_001_GEX_CZINY-0402

description:
Library name: D529_001_GEX_CZINY-0402_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

tag: Sex

value: female

tag: ethnicity

value: Hispanic or Latin American

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: negative

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type

value: scRNA-seq


title: D529_001_ADT_CZINY-0423

description:
Library name: D529_001_ADT_CZINY-0423_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

tag: test results.cmv

value: positive

value: 151 mg/dL

value: CITE 10x 5' v2

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, PFOS, sample8

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFOS, sample9

value: PFOS (DTXSID8037706)


title: D529_001_ADT_CZINY-0422

description:
Library name: D529_001_ADT_CZINY-0422_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

value: LiveOnNY

value: FALSE

value: fresh

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: CITE-seq


title: D529_001_ADT_CZINY-0421

description:
Library name: D529_001_ADT_CZINY-0421_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: Hispanic or Latin American

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: death type

value: brain stem death

value: anoxia

value: negative

tag: test results.cmv

value: positive

value: 151 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, PFOS, sample5

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, PFOS, sample4

value: PFOS (DTXSID8037706)


title: R. subcapitata, 24 h exposure, PFOS, sample6


title: R. subcapitata, 24 h exposure, PFOS, sample12


title: D529_001_ADT_CZINY-0424

description:
Library name: D529_001_ADT_CZINY-0424_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

tag: ethnicity

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D529_001_ADT_CZINY-0419

description:
Library name: D529_001_ADT_CZINY-0419_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: CITE-seq


title: D528_001_GEX_CZINY-0352

description:
Library name: D528_001_GEX_CZINY-0352_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

tag: Sex

tag: ethnicity

value: African American

tag: raw matrix_cellranger_assay_chemistry

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: negative

value: 148 mg/dL

tag: raw matrix_assays

tag: assay type

value: scRNA-seq


title: D529_001_ADT_CZINY-0417

description:
Library name: D529_001_ADT_CZINY-0417_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 68 years

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.blood_sugar

value: 151 mg/dL

tag: library protocol

value: CITE 10x 5' v2

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: mononuclear cell

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, DMSO, sample3

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: DMSO (DTXSID2021735)


title: R. subcapitata, 24 h exposure, PFOS, sample3

value: PFOS (DTXSID8037706)


title: D528_001_GEX_CZINY-0350

description:
Library name: D528_001_GEX_CZINY-0350_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

tag: Sex

value: female

tag: ethnicity

value: African American

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

value: fresh

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: R. subcapitata, 24 h exposure, DMSO, sample2

tag: tissue


title: D528_001_GEX_CZINY-0351

description:
Library name: D528_001_GEX_CZINY-0351_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.ebv

value: positive

value: negative

tag: test results.blood_sugar

value: 148 mg/dL

tag: library protocol

value: UMI

tag: raw matrix_assays

tag: enriched cell_type

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, DMSO, sample1

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: DMSO (DTXSID2021735)


title: D528_001_GEX_CZINY-0349

description:
Library name: D528_001_GEX_CZINY-0349_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.cmv

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: mononuclear cell


title: D528_001_GEX_CZINY-0348

description:
Library name: D528_001_GEX_CZINY-0348_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: African American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: test results.ebv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_feature_keys

tag: raw matrix_assays


title: R. subcapitata, 24 h exposure, DMSO, sample17

description:
Chem9_Chem10_B_CON
Chem9_counts_matrix.txt
Chem10_counts_matrix.txt

growth_protocol: not applicable

extract_protocol:
After a series of flash freezing and homogenization, algae total RNA was extracted using the Norgen Biotek Plant/Fungi Total RNA kit (Norgen) according to the manufacturer’s protocol. Sample quantity and quality was assessed using a NanoDrop Eight spectrophotometer (Thermo Scientific) and 4200 TapeStation (Agilent Technologies).
Sample libraries were prepared using QuantSeq 3’ mRNA-Seq V2 Library Prep Kits (Lexogen, GmbH, Austria) with Unique Dual Index (UDI) and QuantSeq Unique Molecular Identifiers (UMI). Preparation followed manufacturer’s recommendations. Completed libraries were QC’d and quantified using a combination of Qubit dsDNA HS and Agilent 4200 TapeStation HS DNA1000 assays.

treatment_protocol: 800 µL of algae was loaded into each well of 4 x 96-well plates (Beckman Cat #267007) using the Biomek robot. The algae were pelleted by centrifugation at 4000 rpm for 5 min and 400 µL of the supernatant (i.e., media) was removed. Final exposure concentrations were achieved by loading 400 µL of the 2X dosing solutions to the appropriate wells. After the dosing solutions were added, the plates were covered with optical adhesive covers, vortexed briefly to disrupt the algae pellet, and pulse centrifuged making sure to the algae did not pellet. The exposure plates, each containing 700 µL algae after 100 µL was removed for Time 0 apical measurements, were incubated for 24 h at 24ºC under a constant LED 4300 lux grow light and on a timed orbital shaker (Titramax 1000, Heidolph Instruments GmbH) turning on and off every 15 min so the algae remained in suspension.

tag: developmental stage

tag: treatment

value: DMSO


title: R. subcapitata, 24 h exposure, DMSO, sample16

description:
Chem9_Chem10_A_CON
Chem9_counts_matrix.txt
Chem10_counts_matrix.txt


title: D528_001_GEX_CZINY-0346

description:
Library name: D528_001_GEX_CZINY-0346_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

value: positive

tag: test results.cmv

value: negative

value: 148 mg/dL

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample21

description:
Chem9_C_D7
Chem9_counts_matrix.txt

tag: tissue

value: whole body

value: Exponential Growth Stage

value: Fexofenadine


title: R. subcapitata, 24 h exposure, DMSO, sample18

description:
Chem9_Chem10_C_CON
Chem9_counts_matrix.txt
Chem10_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Fexofenadine, sample20

description:
Chem9_C_D6
Chem9_counts_matrix.txt


title: D529_001_ADT_CZINY-0420

description:
Library name: D529_001_ADT_CZINY-0420_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 68 years

tag: dev stage

value: female

value: Hispanic or Latin American

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.ebv

tag: test results.blood_sugar

value: 151 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D528_001_GEX_CZINY-0344

description:
Library name: D528_001_GEX_CZINY-0344_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

value: adult stage

tag: Sex

tag: ethnicity

value: African American

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

value: fresh

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.cmv

tag: raw matrix_assays

value: mononuclear cell

value: scRNA-seq


title: D528_001_GEX_CZINY-0345

description:
Library name: D528_001_GEX_CZINY-0345_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: test results.ebv

value: positive

value: negative

tag: test results.blood_sugar

value: 148 mg/dL

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample19

description:
Chem9_C_D5
Chem9_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fexofenadine


title: R. subcapitata, 24 h exposure, Fexofenadine, sample18

description:
Chem9_C_D4
Chem9_counts_matrix.txt


title: D529_001_ADT_CZINY-0418

description:
Library name: D529_001_ADT_CZINY-0418_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 68 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: death type

tag: cause of_death

tag: body mass_index

value: 151 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fexofenadine, sample17

description:
Chem9_C_D3
Chem9_counts_matrix.txt

tag: tissue


title: R. subcapitata, 24 h exposure, PFOS, sample2

value: PFOS (DTXSID8037706)


title: D528_001_GEX_CZINY-0341

description:
Library name: D528_001_GEX_CZINY-0341_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: female

value: African American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

value: brain stem death

value: anoxia

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell

value: scRNA-seq


title: R. subcapitata, 24 h exposure, Fexofenadine, sample16

description:
Chem9_C_D2
Chem9_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fexofenadine


title: R. subcapitata, 24 h exposure, Fexofenadine, sample15

description:
Chem9_C_D1
Chem9_counts_matrix.txt


title: D528_001_GEX_CZINY-0340

description:
Library name: D528_001_GEX_CZINY-0340_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

tag: death type

tag: cause of_death

tag: body mass_index

value: negative

value: 148 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample14

description:
Chem9_B_D7
Chem9_counts_matrix.txt

tag: tissue


title: D528_001_GEX_CZINY-0339

description:
Library name: D528_001_GEX_CZINY-0339_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: female

value: African American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_assays


title: D528_001_GEX_CZINY-0337

description:
Library name: D528_001_GEX_CZINY-0337_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: fresh

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample13

description:
Chem9_B_D6
Chem9_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fexofenadine


title: D528_001_GEX_CZINY-0338

description:
Library name: D528_001_GEX_CZINY-0338_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

value: negative

value: 148 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: mononuclear cell

tag: assay type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, Fexofenadine, sample12

description:
Chem9_B_D5
Chem9_counts_matrix.txt


title: D528_001_ADT_CZINY-0368

description:
Library name: D528_001_ADT_CZINY-0368_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

tag: Sex

value: female

tag: ethnicity

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fexofenadine, sample11

description:
Chem9_B_D4
Chem9_counts_matrix.txt

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, FC10diol, sample12

value: FC10diol (DTXSID50369896)


title: D528_001_ADT_CZINY-0367

description:
Library name: D528_001_ADT_CZINY-0367_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: African American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

value: brain stem death

value: anoxia

tag: height

tag: test results.ebv

value: positive

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, FC10diol, sample5

value: whole body

value: Exponential Growth Stage


title: R. subcapitata, 24 h exposure, Fexofenadine, sample10

description:
Chem9_B_D3
Chem9_counts_matrix.txt

value: Fexofenadine


title: R. subcapitata, 24 h exposure, PFOS, sample1

value: PFOS (DTXSID8037706)


title: R. subcapitata, 24 h exposure, Fexofenadine, sample9

description:
Chem9_B_D2
Chem9_counts_matrix.txt


title: D528_001_ADT_CZINY-0364

description:
Library name: D528_001_ADT_CZINY-0364_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.cmv

value: negative

tag: test results.blood_sugar

value: 148 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell


title: D528_001_GEX_CZINY-0343

description:
Library name: D528_001_GEX_CZINY-0343_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: African American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: height

tag: test results.ebv

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: D528_001_GEX_CZINY-0342

description:
Library name: D528_001_GEX_CZINY-0342_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

value: positive

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

tag: assay type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample8

description:
Chem9_B_D1
Chem9_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fexofenadine


title: D528_001_ADT_CZINY-0365

description:
Library name: D528_001_ADT_CZINY-0365_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: adult stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: body mass_index

tag: test results.cmv

value: negative

tag: test results.blood_sugar

value: 148 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_assays

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D528_001_ADT_CZINY-0366

description:
Library name: D528_001_ADT_CZINY-0366_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: African American

value: LiveOnNY

value: FALSE

value: fresh

tag: smoking history

value: never

tag: death type

tag: cause of_death

tag: height

tag: test results.ebv

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: enriched cell_type

value: mononuclear cell


title: D528_001_ADT_CZINY-0363

description:
Library name: D528_001_ADT_CZINY-0363_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: brain stem death

value: anoxia

tag: body mass_index

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: snRNA-seq, CITE-seq

tag: assay type


title: D528_001_ADT_CZINY-0362

description:
Library name: D528_001_ADT_CZINY-0362_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

value: adult stage

tag: Sex

value: female

tag: ethnicity

tag: smoking history

tag: death type

value: negative

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, Fexofenadine, sample5

description:
Chem9_A_D5
Chem9_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fexofenadine


title: D528_001_GEX_CZINY-0347

description:
Library name: D528_001_GEX_CZINY-0347_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: African American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: 148 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: enriched cell_type

value: scRNA-seq


title: D528_001_ADT_CZINY-0361

description:
Library name: D528_001_ADT_CZINY-0361_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fexofenadine, sample6

description:
Chem9_A_D6
Chem9_counts_matrix.txt

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, Fexofenadine, sample4

description:
Chem9_A_D4
Chem9_counts_matrix.txt


title: D528_001_ADT_CZINY-0360

description:
Library name: D528_001_ADT_CZINY-0360_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: adult stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: negative

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample3

description:
Chem9_A_D3
Chem9_counts_matrix.txt

value: whole body

value: Exponential Growth Stage

value: Fexofenadine


title: D528_001_ADT_CZINY-0359

description:
Library name: D528_001_ADT_CZINY-0359_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

value: African American

value: LiveOnNY

value: FALSE

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.cmv

tag: test results.blood_sugar

value: 148 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, Fexofenadine, sample2

description:
Chem9_A_D2
Chem9_counts_matrix.txt

tag: tissue

tag: developmental stage

tag: treatment


title: D528_001_ADT_CZINY-0357

description:
Library name: D528_001_ADT_CZINY-0357_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: adult stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fexofenadine, sample1

description:
Chem9_A_D1
Chem9_counts_matrix.txt

value: whole body


title: D528_001_ADT_CZINY-0358

description:
Library name: D528_001_ADT_CZINY-0358_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

tag: smoking history

tag: death type

value: brain stem death

value: anoxia

value: positive

tag: test results.cmv

value: negative

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample21

description:
Chem8_C_D7
Chem8_counts_matrix.txt

tag: tissue

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fipronil carboxamide


title: D528_001_ADT_CZINY-0356

description:
Library name: D528_001_ADT_CZINY-0356_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: African American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: fresh

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: 148 mg/dL

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: assay type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample20

description:
Chem8_C_D6
Chem8_counts_matrix.txt


title: D528_001_ADT_CZINY-0354

description:
Library name: D528_001_ADT_CZINY-0354_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 64 years

value: adult stage

tag: Sex

tag: ethnicity

tag: smoking history

tag: death type

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample19

description:
Chem8_C_D5
Chem8_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

tag: treatment


title: D523_001_GEX_CZINY-0304

description:
Library name: D523_001_GEX_CZINY-0304_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: female

value: Hispanic or Latin American

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 169 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, Fexofenadine, sample7

description:
Chem9_A_D7
Chem9_counts_matrix.txt

value: Exponential Growth Stage

value: Fexofenadine


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample18

description:
Chem8_C_D4
Chem8_counts_matrix.txt

value: Fipronil carboxamide


title: D523_001_GEX_CZINY-0303

description:
Library name: D523_001_GEX_CZINY-0303_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

value: LiveOnNY

value: FALSE

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

tag: assay type


title: D528_001_ADT_CZINY-0353

description:
Library name: D528_001_ADT_CZINY-0353_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: female

value: African American

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: cause of_death

tag: body mass_index

tag: height

value: negative

value: 148 mg/dL

value: CITE 10x 5' v2

value: mononuclear cell

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample17

description:
Chem8_C_D3
Chem8_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fipronil carboxamide


title: D523_001_GEX_CZINY-0302

description:
Library name: D523_001_GEX_CZINY-0302_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 20 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: smoking history

tag: death type

value: brain stem death

value: anoxia

tag: test results.ebv

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: 169 mg/dL

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: D523_001_GEX_CZINY-0301

description:
Library name: D523_001_GEX_CZINY-0301_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: mononuclear cell

tag: assay type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample14

description:
Chem8_B_D7
Chem8_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fipronil carboxamide


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample15

description:
Chem8_C_D1
Chem8_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample16

description:
Chem8_C_D2
Chem8_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample13

description:
Chem8_B_D6
Chem8_counts_matrix.txt


title: D523_001_GEX_CZINY-0300

description:
Library name: D523_001_GEX_CZINY-0300_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 20 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: D523_001_GEX_CZINY-0298

description:
Library name: D523_001_GEX_CZINY-0298_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

value: positive

tag: library protocol

tag: raw matrix_genome_annotation

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample10

description:
Chem8_B_D3
Chem8_counts_matrix.txt

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample12

description:
Chem8_B_D5
Chem8_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample11

description:
Chem8_B_D4
Chem8_counts_matrix.txt


title: D523_001_GEX_CZINY-0297

description:
Library name: D523_001_GEX_CZINY-0297_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: 169 mg/dL

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type

value: scRNA-seq


title: D523_001_GEX_CZINY-0296

description:
Library name: D523_001_GEX_CZINY-0296_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: library protocol

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample8

description:
Chem8_B_D1
Chem8_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fipronil carboxamide


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample9

description:
Chem8_B_D2
Chem8_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample7

description:
Chem8_A_D7
Chem8_counts_matrix.txt


title: D523_001_GEX_CZINY-0295

description:
Library name: D523_001_GEX_CZINY-0295_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 20 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: death type

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: enriched cell_type

value: mononuclear cell


title: D528_001_ADT_CZINY-0355

description:
Library name: D528_001_ADT_CZINY-0355_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 64 years

tag: dev stage

value: African American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

value: negative

value: 148 mg/dL

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_assays

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: D523_001_GEX_CZINY-0294

description:
Library name: D523_001_GEX_CZINY-0294_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

value: fresh

tag: smoking history

value: never

tag: death type

tag: test results.ebv

value: positive

tag: test results.cmv

value: 169 mg/dL

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: D523_001_GEX_CZINY-0292

description:
Library name: D523_001_GEX_CZINY-0292_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: adult stage

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

tag: sample preservation_method

tag: cause of_death

tag: body mass_index

tag: test results.blood_sugar

tag: raw matrix_genome_annotation

tag: enriched cell_type

value: mononuclear cell


title: D523_001_GEX_CZINY-0291

description:
Library name: D523_001_GEX_CZINY-0291_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

value: brain stem death

value: anoxia

tag: height

tag: library protocol

tag: raw matrix_assays

tag: assay type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample3

description:
Chem8_A_D3
Chem8_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Fipronil carboxamide


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample5

description:
Chem8_A_D5
Chem8_counts_matrix.txt


title: D523_001_GEX_CZINY-0290

description:
Library name: D523_001_GEX_CZINY-0290_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

value: fresh

value: never

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.ebv

value: positive

tag: test results.cmv

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: D523_001_GEX_CZINY-0289

description:
Library name: D523_001_GEX_CZINY-0289_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

tag: smoking history

tag: height

tag: test results.blood_sugar

value: 169 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample2

description:
Chem8_A_D2
Chem8_counts_matrix.txt

tag: tissue

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, DMSO, sample15

description:
Chem7_Chem8_C_CON
Chem7_counts_matrix.txt
Chem8_counts_matrix.txt

value: DMSO


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample1

description:
Chem8_A_D1
Chem8_counts_matrix.txt


title: R. subcapitata, 24 h exposure, DMSO, sample14

description:
Chem7_Chem8_B_CON
Chem7_counts_matrix.txt
Chem8_counts_matrix.txt


title: D523_001_ADT_CZINY-0288

description:
Library name: D523_001_ADT_CZINY-0288_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: adult stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: sample preservation_method

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.ebv

tag: test results.cmv

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, DMSO, sample13

description:
Chem7_Chem8_A_CON
Chem7_counts_matrix.txt
Chem8_counts_matrix.txt

value: whole body

value: Exponential Growth Stage


title: D523_001_ADT_CZINY-0285

description:
Library name: D523_001_ADT_CZINY-0285_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

value: FALSE

value: fresh

tag: smoking history

value: brain stem death

value: anoxia

tag: height

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell


title: D523_001_GEX_CZINY-0299

description:
Library name: D523_001_GEX_CZINY-0299_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: sample preservation_method

value: never

tag: death type

tag: cause of_death

tag: body mass_index

tag: test results.ebv

value: positive

value: 169 mg/dL

value: UMI

value: gene symbol, antibody target

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: D523_001_ADT_CZINY-0284

description:
Library name: D523_001_ADT_CZINY-0284_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 20 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: smoking history

tag: height

tag: test results.cmv

tag: test results.blood_sugar

value: CITE 10x 5' v2

tag: raw matrix_value_units

tag: assay type

value: CITE-seq

tag: antibodies/tags


title: D523_001_ADT_CZINY-0283

description:
Library name: D523_001_ADT_CZINY-0283_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample19

description:
Chem7_C_D5
Chem7_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Cetirizine Hydrochloride


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample18

description:
Chem7_C_D4
Chem7_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample20

description:
Chem7_C_D6
Chem7_counts_matrix.txt


title: D523_001_ADT_CZINY-0282

description:
Library name: D523_001_ADT_CZINY-0282_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: sample preservation_method

tag: smoking history

value: never

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

tag: test results.cmv

value: 169 mg/dL

value: UMI

value: mononuclear cell


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample6

description:
Chem8_A_D6
Chem8_counts_matrix.txt

tag: tissue

value: Fipronil carboxamide


title: D523_001_ADT_CZINY-0281

description:
Library name: D523_001_ADT_CZINY-0281_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: adult stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample21

description:
Chem7_C_D7
Chem7_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D523_001_GEX_CZINY-0293

description:
Library name: D523_001_GEX_CZINY-0293_lib
scRNA-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

tag: raw matrix_cellranger_assay_chemistry

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, Fipronil carboxamide, sample4

description:
Chem8_A_D4
Chem8_counts_matrix.txt

tag: tissue


title: D523_001_ADT_CZINY-0280

description:
Library name: D523_001_ADT_CZINY-0280_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: brain stem death

value: anoxia

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: 169 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: assay type

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample17

description:
Chem7_C_D3
Chem7_counts_matrix.txt

tag: developmental stage

tag: treatment

value: Cetirizine Hydrochloride


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample16

description:
Chem7_C_D2
Chem7_counts_matrix.txt


title: D523_001_ADT_CZINY-0279

description:
Library name: D523_001_ADT_CZINY-0279_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 20 years

value: adult stage

tag: Sex

tag: ethnicity

value: Hispanic or Latin American

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

value: CITE 10x 5' v2

value: gene symbol, antibody target

tag: enriched cell_type

value: mononuclear cell


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample14

description:
Chem7_B_D7
Chem7_counts_matrix.txt

tag: tissue

value: whole body

value: Exponential Growth Stage


title: D523_001_ADT_CZINY-0286

description:
Library name: D523_001_ADT_CZINY-0286_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: FALSE

value: fresh

value: never

value: brain stem death

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: assay type


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample15

description:
Chem7_C_D1
Chem7_counts_matrix.txt

tag: developmental stage

tag: treatment


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample13

description:
Chem7_B_D6
Chem7_counts_matrix.txt


title: D523_001_ADT_CZINY-0278

description:
Library name: D523_001_ADT_CZINY-0278_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: sample preservation_method

tag: smoking history

tag: death type

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 169 mg/dL

value: UMI

value: CITE-seq

tag: antibodies/tags

value: TotalSeq-C Human Universal Cocktail


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample12

description:
Chem7_B_D5
Chem7_counts_matrix.txt

tag: tissue

value: Cetirizine Hydrochloride


title: D523_001_ADT_CZINY-0275

description:
Library name: D523_001_ADT_CZINY-0275_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: adult stage

value: Hispanic or Latin American

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

value: CITE 10x 5' v2

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

tag: raw matrix_assays

tag: enriched cell_type


title: D523_001_ADT_CZINY-0277

description:
Library name: D523_001_ADT_CZINY-0277_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

tag: death type

tag: cause of_death

tag: body mass_index

value: mononuclear cell

tag: assay type


title: D523_001_ADT_CZINY-0276

description:
Library name: D523_001_ADT_CZINY-0276_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: living at_sample_collection

value: never

value: brain stem death

value: anoxia

tag: height

tag: test results.ebv

tag: test results.cmv

tag: test results.blood_sugar

value: snRNA-seq, CITE-seq

tag: antibodies/tags


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample10

description:
Chem7_B_D3
Chem7_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: D523_001_ADT_CZINY-0274

description:
Library name: D523_001_ADT_CZINY-0274_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

tag: ethnicity

tag: sample preservation_method

tag: smoking history

value: positive

value: 169 mg/dL

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

value: UMI

tag: raw matrix_feature_keys

tag: raw matrix_assays

tag: enriched cell_type

value: CITE-seq

value: TotalSeq-C Human Universal Cocktail


title: D523_001_ADT_CZINY-0273

description:
Library name: D523_001_ADT_CZINY-0273_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 20 years

tag: dev stage

value: adult stage

value: Hispanic or Latin American

tag: tissue

tag: source

value: LiveOnNY

tag: suspension cell_depletion_factors

tag: living at_sample_collection

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: test results.cmv

value: CITE 10x 5' v2

tag: assay type


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample11

description:
Chem7_B_D4
Chem7_counts_matrix.txt

tag: developmental stage

tag: treatment

value: Cetirizine Hydrochloride


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample9

description:
Chem7_B_D2
Chem7_counts_matrix.txt


title: D523_001_ADT_CZINY-0287

description:
Library name: D523_001_ADT_CZINY-0287_lib
CITE-seq of mononuclear cells from pooled:blood,jejunal epithelium,inguinal lymph node,lung,spleen,bone marrow,mesenteric lymph node,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

value: FALSE

tag: sample preservation_method

value: fresh

tag: smoking history

value: never

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: gene symbol, antibody target

value: mononuclear cell

tag: antibodies/tags


title: D520_001_GEX_CZINY-0240

description:
Library name: D520_001_GEX_CZINY-0240_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

value: 25 years

tag: dev stage

value: Middle Eastern/North African

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

tag: height

tag: test results.ebv

value: positive

value: 120 mg/dL

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: D520_001_GEX_CZINY-0238

description:
Library name: D520_001_GEX_CZINY-0238_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: assay type


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample7

description:
Chem7_A_D7
Chem7_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Cetirizine Hydrochloride


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample6

description:
Chem7_A_D6
Chem7_counts_matrix.txt


title: D520_001_GEX_CZINY-0237

description:
Library name: D520_001_GEX_CZINY-0237_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

value: never

tag: death type

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: raw matrix_value_units

tag: raw matrix_feature_keys


title: D520_001_GEX_CZINY-0236

description:
Library name: D520_001_GEX_CZINY-0236_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 25 years

tag: Sex

tag: ethnicity

value: Middle Eastern/North African

tag: sample preservation_method

tag: smoking history

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: gene symbol, antibody target

tag: raw matrix_assays

tag: enriched cell_type

value: mononuclear cell


title: D520_001_GEX_CZINY-0239

description:
Library name: D520_001_GEX_CZINY-0239_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: death type

value: brain stem death

tag: cause of_death

value: anoxia

tag: body mass_index

value: positive

value: 120 mg/dL

tag: assay type


title: D520_001_GEX_CZINY-0235

description:
Library name: D520_001_GEX_CZINY-0235_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: adult stage

tag: Sex

tag: ethnicity

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

tag: height

tag: test results.ebv

tag: raw matrix_value_units

tag: raw matrix_feature_keys

value: snRNA-seq, CITE-seq

value: scRNA-seq


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample5

description:
Chem7_A_D5
Chem7_counts_matrix.txt

tag: tissue

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment

value: Cetirizine Hydrochloride


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample4

description:
Chem7_A_D4
Chem7_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample8

description:
Chem7_B_D1
Chem7_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample3

description:
Chem7_A_D3
Chem7_counts_matrix.txt


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample2

description:
Chem7_A_D2
Chem7_counts_matrix.txt


title: D520_001_GEX_CZINY-0234

description:
Library name: D520_001_GEX_CZINY-0234_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: female

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

value: FALSE

value: fresh

tag: death type

tag: test results.cmv

tag: test results.blood_sugar

tag: library protocol

tag: raw matrix_genome_annotation

value: UMI

tag: raw matrix_assays

tag: enriched cell_type


title: R. subcapitata, 24 h exposure, Cetirizine Hydrochloride, sample1

description:
Chem7_A_D1
Chem7_counts_matrix.txt


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample21

description:
Chem6_C_D7
Chem6_counts_matrix.txt

value: 4-chlorophenyl methyl sulfone


title: D520_001_GEX_CZINY-0230

description:
Library name: D520_001_GEX_CZINY-0230_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

value: 25 years

tag: Sex

tag: ethnicity

value: Middle Eastern/North African

tag: sample preservation_method

tag: smoking history

value: never

tag: cause of_death

tag: body mass_index

tag: height

tag: test results.ebv

tag: raw matrix_value_units

value: gene symbol, antibody target

value: mononuclear cell

tag: assay type


title: D520_001_GEX_CZINY-0231

description:
Library name: D520_001_GEX_CZINY-0231_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: dev stage

value: adult stage

tag: tissue

tag: source

tag: suspension cell_depletion_factors

tag: raw matrix_cellranger_assay_chemistry

tag: living at_sample_collection

tag: death type

value: brain stem death

value: anoxia

value: positive

tag: test results.cmv

tag: test results.blood_sugar

value: 120 mg/dL

tag: raw matrix_feature_keys


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample20

description:
Chem6_C_D6
Chem6_counts_matrix.txt

value: whole body

tag: developmental stage

value: Exponential Growth Stage

tag: treatment


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample18

description:
Chem6_C_D4
Chem6_counts_matrix.txt


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample19

description:
Chem6_C_D5
Chem6_counts_matrix.txt


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample16

description:
Chem6_C_D2
Chem6_counts_matrix.txt


title: D520_001_GEX_CZINY-0233

description:
Library name: D520_001_GEX_CZINY-0233_lib
scRNA-seq of mononuclear cells from pooled:blood,colonic epithelium,jejunal epithelium,lung,bone marrow,mesenteric lymph node,lamina propria of mucosa of colon,thoracic lymph node,epithelial lining fluid,jejunum lamina propria

tag: donor id

tag: age

tag: Sex

value: female

tag: ethnicity

value: LiveOnNY

tag: sample preservation_method

tag: smoking history

tag: cause of_death

tag: body mass_index

tag: library protocol

tag: raw matrix_genome_annotation

tag: raw matrix_assays

value: snRNA-seq, CITE-seq

tag: enriched cell_type

value: scRNA-seq


title: R. subcapitata, 24 h exposure, 4-chlorophenyl methyl sulfone, sample17

description:
Chem6_C_D3
Chem6_counts_matrix.txt

tag: tissue

value: 4-chlorophenyl methyl sulfone