title: Human breast cancer patient172

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9194.v1_7R02C01


title: Human breast cancer patient171

status: Public on Jul 30 2025

type: genomic

city: Gothenburg

first: Axel

last: Stenmark Tullberg

address: Bla Straket

department: Department of Oncology

country: Sweden

institute: University of Gothenburg

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8266.v1_7R01C01

hyb_protocol: Bisulfite-converted DNA was hybridized to the Illumina Infinium Methylation EPIC array (MethylationEPIC_v-1-0_B5) according to the manufacturer's standard Infinium HD Methylation Assay protocol.

scan_protocol: Illumina Infinium-compatible scanner

data_processing:
Raw intensity data (IDAT files) from the Illumina Infinium Methylation EPIC array were processed using GenomeStudio (v2011.1) from Illumina Inc. Data processing included background subtraction and normalization using GenomeStudio's 'Normalization Controls' feature, as per Illumina's recommendations. Samples were considered acceptable if their probe call rate exceeded 98% at a detection p-value of 0.01. Individual marker loci with a detection p-value > 0.01 were excluded. Processed data refers to Beta values mapped to Genome Build 37 (hg19). The final methylation profile is provided in a matrix format.
Processed values are reported as Beta values, representing the methylation level at each CpG site. Beta values range from 0 (completely unmethylated) to 1 (fully methylated).

label: Cy3 and Cy5

molecule: genomic DNA

organism: Homo sapiens

source_name: Breast cancer

label_protocol: Genomic DNA (250 ng per sample) underwent bisulfite conversion using the EZ DNA Methylation Kit (Zymo Research, Product No: D5004) according to the manufacturer's protocol. Bisulfite-converted DNA was eluted in 15µl, evaporated to a volume of <4µl, and then processed for the Illumina Infinium Methylation EPIC array.

growth_protocol: Samples were cryopreserved

extract_protocol: Genomic DNA was extracted from fresh-frozen or formalin-fixed paraffin-embedded samples using a standard spin-column based DNA extraction method, according to established laboratory protocols.

treatment_protocol: No treatment

tag: tissue

value: Breast cancer

tag: treatment

value: Pretreatment

value: Positive

tag: proliferativeindex

tag: immunescore


title: Human breast cancer patient181

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10547.v1_9R01C01


title: Primary osteoblasts, OEMig6-1

status: Public on Jul 31 2025

type: SRA

city: Guangzhou

first: Rulong

last: Cai

state: Guangdong

address: No183 West Zhongshan Avenue, Tianhe District

department: Department of Joint Surgery

country: China

institute: The Third Affiliated Hospital of Southern Medical University

description: Library name: OE-1

library_source: transcriptomic

data_processing:
Reads filtering under criteria removing reads with 20% of the base quality lower than 13
HISAT2.1.0 mapping to reference genome
count counting
Assembly: mm10
Supplementary files format and content: TXT file contain counts for each sample

molecule: total RNA

organism: Mus musculus

source_name: Primary osteoblasts

growth_protocol: Primary osteoblasts were maintained in α-MEM supplemented with 10% fetal bovine serum (FBS) and antibiotics in humidified atmosphere with 5% CO2 at 37℃

extract_protocol:
Osteoblasts RNA was harvested using Trizol reagent. The RNA quality was checked by Bioanalyzer 2200 (Aligent) and kept at -80℃.The RNA with RIN >8.0 is right for cDNA library construction.
mRNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Primary osteoblasts were incubated in growth media containing 6 μg/ml polybrene and lentiviral vector encoding Mig6 (Lv-Mig6) or an empty vector control (Lv-Null) obtained from Hanheng Biotech for 24 hours (37°C). After 24 hours, replace with complete culture medium. Select transduced cells using puromycin at a final concentration of 1.5 μg/ml. For differentiation, osteoblasts were seeded in 24-well culture plates (4 × 104 cells per well) and induced with 50 μg/mL Lascorbic acid (Sigma), 10 mM β-glycerophosphate (Sigma) and 10 μM Dexamethasone (Sigma) for 7 days.

tag: cell type

value: Primary osteoblasts

tag: genotype

value: Mig6 over expression

value: osteogenic differentiation


title: Primary osteoblasts, OENC-1

description: Library name: NC-1

value: Control


title: Primary osteoblasts, OENC-2

description: Library name: NC-2


title: Primary osteoblasts, OEMig6-2

description: Library name: OE-2


title: Primary osteoblasts, OENC-3

description: Library name: NC-3


title: Primary osteoblasts, OEMig6-3

description: Library name: OE-3


title: Human breast cancer patient165

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6664.v1_5R07C01


title: Human breast cancer patient166

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7305.v2_6R01C01


title: Human breast cancer patient191

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4387.v1_10R06C01


title: Human breast cancer patient163

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7709.v1_5R05C01


title: Human breast cancer patient179

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9714.v1_8R06C01


title: Human breast cancer patient160

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4661.v2_5R02C01


title: Human breast cancer patient187

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4686.v1_10R02C01


title: Human breast cancer patient183

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6712.v1_9R05C01


title: Human breast cancer patient173

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6769.v1_7R03C01


title: Human breast cancer patient157

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6848.v1_4R04C01


title: Human breast cancer patient170

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4304.v1_6R07C01


title: Human breast cancer patient169

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4768.v1_6R06C01


title: Human breast cancer patient168

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9218.v1_6R05C01


title: Human breast cancer patient167

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8259.v1_6R02C01


title: Human breast cancer patient155

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9155.v1_4R02C01


title: Human breast cancer patient153

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8069.v1_3R07C01


title: Human breast cancer patient162

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10013.v1_5R04C01


title: Human breast cancer patient152

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5037.v1_3R06C01


title: Human breast cancer patient161

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11105.v1_5R03C01


title: Human breast cancer patient164

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7441.v1_5R06C01


title: Human breast cancer patient148

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9491.v1_2R07C01


title: Human breast cancer patient144

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11111.v2_2R02C01


title: Human breast cancer patient146

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10264.v1_2R05C01


title: Human breast cancer patient143

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8481.v1_2R01C01


title: Human breast cancer patient159

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8011.v1_4R08C01


title: Human breast cancer patient158

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10538.v1_4R07C01


title: Human breast cancer patient156

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7433.v1_4R03C01


title: Human breast cancer patient154

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10743.v2_3R08C01


title: Human breast cancer patient151

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7512.v1_3R05C01


title: Human breast cancer patient150

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8419.v1_3R03C01


title: Human breast cancer patient140

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10695.v1_1R04C01


title: Human breast cancer patient137

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5462.v1_24R05C01


title: Human breast cancer patient135

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7738.v1_23R07C01


title: Human breast cancer patient139

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8121.v1_1R02C01


title: Human breast cancer patient145

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9152.v1_2R04C01


title: Human breast cancer patient149

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8599.v2_3R01C01


title: Human breast cancer patient141

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9536.v1_1R05C01


title: Human breast cancer patient133

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11184.v1_23R05C01


title: Human breast cancer patient142

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11201.v1_1R08C01


title: Human breast cancer patient134

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8154.v1_23R06C01


title: Human breast cancer patient131

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10727.v1_23R03C01


title: Human breast cancer patient138

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8871.v1_4R05C01


title: Human breast cancer patient132

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9207.v1_23R04C01


title: Human breast cancer patient130

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7453.v1_23R02C01


title: Human breast cancer patient147

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5038.v1_2R06C01


title: Human breast cancer patient128

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9111.v1_22R06C01


title: Human breast cancer patient127

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11473.v1_22R05C01


title: Human breast cancer patient126

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7164.v1_22R04C01


title: Human breast cancer patient124

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7884.v1_22R02C01


title: Human breast cancer patient121

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8396.v1_21R05C01


title: Human breast cancer patient125

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6972.v1_22R03C01


title: Human breast cancer patient120

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9047.v1_21R04C01


title: Human breast cancer patient118

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9265.v1_21R01C01


title: Human breast cancer patient122

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11300.v1_21R07C01


title: Human breast cancer patient136

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10907.v1_24R01C01


title: Human breast cancer patient119

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8409.v1_21R03C01


title: Human breast cancer patient117

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8162.v1_20R08C01


title: Human breast cancer patient116

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9824.v1_20R07C01


title: Human breast cancer patient111

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6665.v2_20R02C01


title: Human breast cancer patient112

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10437.v1_20R03C01


title: Human breast cancer patient114

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7438.v1_20R05C01


title: Human breast cancer patient113

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10760.v1_20R04C01


title: Human breast cancer patient110

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6718.v2_19R08C01


title: Human breast cancer patient109

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8371.v1_19R07C01


title: Human breast cancer patient129

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7076.v1_22R08C01


title: Human breast cancer patient108

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8759.v1_19R06C01


title: Human breast cancer patient115

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11060.v1_20R06C01


title: Human breast cancer patient106

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7730.v1_19R01C01


title: Human breast cancer patient107

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5513.v1_19R04C01


title: Human breast cancer patient123

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6975.v1_22R01C01


title: Human breast cancer patient105

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10757.v1_18R08C01


title: Human breast cancer patient238

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7094.v1_18R07C01


title: Human breast cancer patient103

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7101.v1_18R06C01


title: Human breast cancer patient102

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9276.v1_18R05C01


title: Human breast cancer patient98

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5533.v1_17R06C01


title: Human breast cancer patient104

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8260.v1_18R07C01


title: Human breast cancer patient101

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10648.v1_18R04C01


title: Human breast cancer patient100

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8844.v1_18R02C01


title: Human breast cancer patient95

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8434.v1_17R03C01


title: Human breast cancer patient96

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9375.v1_17R04C01


title: Human breast cancer patient92

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8682.v2_16R06C01


title: Human breast cancer patient93

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10520.v1_16R08C01


title: Human breast cancer patient94

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8287.v1_17R01C01


title: Human breast cancer patient91

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9950.v1_16R05C01


title: Human breast cancer patient90

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7790.v1_16R02C01


title: Human breast cancer patient89

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10339.v1_16R01C01


title: Human breast cancer patient88

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11230.v1_15R08C01


title: Human breast cancer patient86

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7474.v1_15R04C01


title: Human breast cancer patient87

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9296.v1_15R07C01


title: Human breast cancer patient83

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8272.v2_15R01C01


title: Human breast cancer patient85

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9073.v1_15R03C01


title: Human breast cancer patient84

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7174.v1_15R02C01


title: Human breast cancer patient99

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10926.v1_18R01C01


title: Human breast cancer patient82

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8407.v1_14R08C01


title: Human breast cancer patient97

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8857.v1_17R05C01


title: Human breast cancer patient81

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8091.v1_14R07C01


title: Human breast cancer patient80

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8711.v1_14R06C01


title: Human breast cancer patient79

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8668.v1_14R05C01


title: Human breast cancer patient78

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10239.v1_14R01C01


title: Human breast cancer patient76

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11309.v1_13R07C01


title: Human breast cancer patient74

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7004.v1_13R03C01


title: Human breast cancer patient77

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7325.v1_13R08C01


title: Human breast cancer patient71

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7111.v1_12R08C01


title: Human breast cancer patient75

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10778.v2_13R05C01


title: Human breast cancer patient73

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10529.v1_13R02C01


title: Human breast cancer patient72

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8649.v1_13R01C01


title: Human breast cancer patient69

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11177.v1_12R05C01


title: Human breast cancer patient66

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7536.v1_12R01C01


title: Human breast cancer patient65

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8732.v1_11R08C01


title: Human breast cancer patient67

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7670.v1_12R02C01


title: Human breast cancer patient62

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8313.v1_11R04C01


title: Human breast cancer patient64

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9626.v1_11R06C01


title: Human breast cancer patient70

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4605.v1_12R07C01


title: Human breast cancer patient63

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7021.v2_11R05C01


title: Human breast cancer patient68

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10455.v1_12R04C01


title: Human breast cancer patient56

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8836.v1_10R06C01


title: Human breast cancer patient59

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8939.v1_11R01C01


title: Human breast cancer patient61

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7291.v1_11R03C01


title: Human breast cancer patient54

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8153.v1_10R04C01


title: Human breast cancer patient58

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7745.v1_10R08C01


title: Human breast cancer patient55

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8230.v1_10R05C01


title: Human breast cancer patient53

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_11295.v1_10R01C01


title: Human breast cancer patient52

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9607.v1_9R08C01


title: Human breast cancer patient49

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10782.v1_9R05C01


title: Human breast cancer patient50

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9528.v1_9R06C01


title: Human breast cancer patient51

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6910.v1_9R07C01


title: Human breast cancer patient47

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7791.v1_9R03C01


title: Human breast cancer patient57

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9704.v1_10R07C01


title: Human breast cancer patient46

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4636.v1_9R01C01


title: Human breast cancer patient45

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8363.v1_8R08C01


title: Human breast cancer patient43

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7490.v1_8R04C01


title: Human breast cancer patient44

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7105.v2_8R07C01


title: Human breast cancer patient42

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8334.v1_8R03C01


title: Human breast cancer patient38

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10821.v1_7R06C01


title: Human breast cancer patient41

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9413.v1_8R02C01


title: Human breast cancer patient40

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10429.v1_7R08C01


title: Human breast cancer patient35

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9693.v1_7R03C01


title: Human breast cancer patient37

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7543.v1_7R05C01


title: Human breast cancer patient36

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6150.v2_7R04C01


title: Human breast cancer patient39

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8839.v1_7R07C01


title: Human breast cancer patient32

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7656.v1_6R08C01


title: Human breast cancer patient34

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7672.v1_7R02C01


title: Human breast cancer patient60

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8151.v1_11R02C01


title: Human breast cancer patient31

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4610.v1_6R07C01


title: Human breast cancer patient29

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6261.v1_6R02C01


title: Human breast cancer patient28

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9004.v1_6R01C01


title: Human breast cancer patient27

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7779.v1_5R08C01


title: Human breast cancer patient24

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_10554.v1_4R07C01


title: Human breast cancer patient26

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_7346.v1_5R06C01


title: Human breast cancer patient48

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6821.v1_9R04C01


title: Human breast cancer patient22

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6707.v1_4R04C01


title: Human breast cancer patient20

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4761.v1_4R02C01


title: Human breast cancer patient19

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_4762.v1_4R01C01


title: Human breast cancer patient23

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_5579.v1_4R06C01


title: Human breast cancer patient21

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9374.v2_4R03C01


title: Human breast cancer patient17

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_6109.v1_3R06C01


title: Human breast cancer patient25

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9343.v1_4R08C01


title: Human breast cancer patient33

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8318.v1_7R01C01


title: Human breast cancer patient18

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9489.v1_3R07C01


title: Human breast cancer patient16

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9426.v1_3R05C01


title: Human breast cancer patient30

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8337.v2_6R06C01


title: Human breast cancer patient14

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9036.v1_3R03C01


title: Human breast cancer patient13

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_9786.v1_3R02C01


title: Human breast cancer patient11

description:
Single-base extension was performed using hapten-labeled dideoxynucleotides, followed by multi-layered fluorescent staining with streptavidin-Cy3 and anti-DNP-Cy5 to detect incorporated labels.
Methylation analysis was performed of ER-positive tumors to identify tumor-intrinsic characteristics associated with immune responsiveness. The S04 epithelial cell state was associated with immune responsiveness while the S05 epithelial cell trate predicted immune evasion.
Illumina EPIC v1-0_B5 array
KAPE1_8837.v1_2R08C01