title: muscle, PH023, week 0, 3hr

description:
PH023w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH021, week 16, rest

status: Public on Jul 22 2025

type: SRA

city: Dayton

first: Madhavi

last: Kadakia

state: OH

address: 3640 Colonel Glenn Hwy

department: Biochemistry and Molecular Biology

country: USA

institute: Wright State University

description:
PH021w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt

library_source: other

data_processing:
Data processing performed in Partek Flow v10.0.21.0706
Reads were trimmed to a fixed length based on an average PHRED quality score greater than 20.
Trimmed reads were alighed to miRbase v21/hg38 using Bowtie aligner (seed mismatch =1, seed length = 10) and quantitated using miRBase v21.
Reads were normalized using the Trimmed Mean of M values (TMM) normalization method with an offset of 1.0.
Assembly: miRBase v21 of the hg38 (GRCh38) assembly.
Supplementary files format and content: tab-delimited text files listing raw read counts for each sample
Supplementary files format and content: tab-delimited text files listing TMM-normalized read counts for each sample

molecule: other

organism: Homo sapiens

source_name: vastus lateralis muscle

extract_protocol:
Muscle: Total RNA isolated using mirVana Paris Kit (Fisher); Serum exosomes: Exosomes isolated using Total Exosome Isolation from Serum Kit (Life Tech) and exosomal RNA purified using the Total Exosome RNA and Protein Isolation Kit (Life Tech).  XX RNA was used for construction of sequencing libraries.
cDNA was barcoded with IonExpress RNA-Seq Barcode 1-16 kit (Life Tech). 7.5picomoles each of 8-10 barcoded libraries were pooled and clonally amplified onto IonSphere Particles and enriched using the OneTouch2 (Life Tech).

treatment_protocol: All participants completed 12 weeks of either TRAD or HITT exercise followed by a 4 week detraining period.

tag: tissue

value: vastus lateralis muscle

tag: participant id

tag: treatment

value: TRAD

tag: week

value: week 16

tag: time

value: rest

tag: Sex

value: Female


title: 6229009032_R04C02 CD4+

type: genomic

city: Boston

first: Benjamin

middle: A

last: Raby

address: 300 Longwood Ave

institute: Boston Children's Hospital

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)

hyb_protocol: Using standard Illumina Infinium Human Methylation 450K BeadChip array hyb protocol.

scan_protocol: Using standard Illumina Infinium Human Methylation 450K BeadChip array scan protocol.

data_processing: Normalization was performed using the within-array combination of Noob (Triche et al. 2013) in R package “minfi” and BMIQ (Teschendorff et al. 2013) in R package “wateRmelon”. The minfi package was used to identify and remove 25,165 probes with SNPs. Sex was imputed by DNA methylation and 23 samples were removed due to mismatch between reported and genetic imputed sex. ComBat (Johnson, 2017) from the sva R package (Leek, 2023) was used for batch effect correction, transforming to m-values, then back transforming to beta-values.

label: Cy3, Cy5

molecule: genomic DNA

source_name: CD4 + T-Cells from CPT Tubes

label_protocol: Cy3, Cy5

extract_protocol: PureGene Blood Kit (Qiagen, Germantown, Maryland), AllPrep DNA Mini Kit (Qiagen)

tag: sample id

tag: subject id

value: CD4 + T-Cells from CPT Tubes

value: M

tag: age

tag: asthma

value: Y


title: 6229009032_R04C01 CD4+

value: N


title: muscle, PH025, week 0, 3hr

description:
PH025w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt

value: week 0


title: muscle, PH021, week 12, pre

description:
PH021w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt

value: week 12

value: pre


title: muscle, PH021, week 12, 3hr

description:
PH021w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009032_R03C02 CD4+

value: F


title: muscle, PH021, week 12, 24hr

description:
PH021w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH021, week 0, pre

description:
PH021w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009032_R02C02 CD4+


title: 6229009032_R02C01 CD4+


title: muscle, PH021, week 0, 3hr

description:
PH021w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH021, week 0, 24hr

description:
PH021w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH020, week 16, rest

description:
PH020w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt

value: HITT


title: 6229009032_R01C02 CD4+


title: 6229009032_R05C01 CD4+


title: muscle, PH023, week 0, 24hr

description:
PH023w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R05C02 CD4+


title: 6229009032_R01C01 CD4+


title: 6229009023_R06C02 CD4+


title: 6229009023_R06C01 CD4+


title: muscle, PH020, week 0, pre

description:
PH020w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH020, week 12, pre

description:
PH020w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH020, week 12, 3hr

description:
PH020w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R05C01 CD4+


title: muscle, PH020, week 12, 24hr

description:
PH020w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R03C02 CD4+


title: muscle, PH017, week 16, rest

description:
PH017w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R04C01 CD4+


title: muscle, PH017, week 12, pre

description:
PH017w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R04C02 CD4+


title: muscle, PH020, week 0, 24hr

description:
PH020w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009032_R03C01 CD4+

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)


title: 6229009023_R03C01 CD4+


title: muscle, PH017, week 12, 3hr

description:
PH017w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH017, week 12, 24hr

description:
PH017w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R02C02 CD4+


title: 6229009023_R02C01 CD4+


title: muscle, PH017, week 0, pre

description:
PH017w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R01C01 CD4+


title: muscle, PH017, week 0, 3hr

description:
PH017w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH017, week 0, 24hr

description:
PH017w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009022_R06C02 CD4+


title: 6229009022_R06C01 CD4+


title: muscle, PH015, week 12, pre

description:
PH015w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt

value: Male


title: muscle, PH015, week 12, 24hr

description:
PH015w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH015, week 16, rest

description:
PH015w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009022_R05C02 CD4+


title: 6229009022_R04C02 CD4+


title: muscle, PH015, week 12, 3hr

description:
PH015w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009022_R03C01 CD4+


title: 6229009022_R02C02 CD4+


title: 6229009022_R04C01 CD4+


title: muscle, PH015, week 0, pre

description:
PH015w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009022_R03C02 CD4+


title: muscle, PH015, week 0, 3hr

description:
PH015w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH015, week 0, 24hr

description:
PH015w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH008, week 16, rest

description:
PH008w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH008, week 12, pre

description:
PH008w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH008, week 12, 3hr

description:
PH008w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009022_R01C02 CD4+


title: 6229009022_R01C01 CD4+


title: muscle, PH008, week 12, 24hr

description:
PH008w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R06C02 CD4+

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)


title: 6229009009_R06C01 CD4+


title: muscle, PH008, week 0, 3hr

description:
PH008w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R05C02 CD4+


title: muscle, PH006, week 16, rest

description:
PH006w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009113_R06C01 CD4+


title: muscle, PH006, week 12, pre

description:
PH006w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH006, week 12, 3hr

description:
PH006w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R04C01 CD4+


title: 6229009022_R02C01 CD4+


title: muscle, PH008, week 0, 24hr

description:
PH008w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R03C02 CD4+


title: muscle, PH006, week 12, 24hr

description:
PH006w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R03C01 CD4+


title: 6229009009_R02C01 CD4+


title: muscle, PH006, week 0, 3hr

description:
PH006w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH006, week 0, pre

description:
PH006w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH004, week 16, rest

description:
PH004w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R04C02 CD4+


title: muscle, PH006, week 0, 24hr

description:
PH006w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R01C01 CD4+


title: muscle, PH008, week 0, pre

description:
PH008w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R06C02 CD4+


title: muscle, PH004, week 12, pre

description:
PH004w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH004, week 12, 3hr

description:
PH004w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R06C01 CD4+


title: muscle, PH004, week 12, 24hr

description:
PH004w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009009_R05C01 CD4+


title: muscle, PH041, week 0, pre

description:
PH041w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R05C02 CD4+


title: muscle, PH004, week 0, pre

description:
PH004w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009023_R01C02 CD4+

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)


title: 6229009009_R02C02 CD4+


title: muscle, PH004, week 0, 3hr

description:
PH004w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R04C01 CD4+


title: muscle, PH004, week 0, 24hr

description:
PH004w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R04C02 CD4+


title: 6229009006_R03C02 CD4+


title: 6229009006_R05C01 CD4+


title: 6229009006_R03C01 CD4+


title: muscle, PH001, week 12, pre

description:
PH001w12pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R02C01 CD4+


title: muscle, PH001, week 12, 24hr

description:
PH001w12h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH001, week 0, pre

description:
PH001w0pre_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6229009006_R02C02 CD4+


title: muscle, PH001, week 16, rest

description:
PH001w16rst_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6057825035_R06C01 CD4+


title: muscle, PH001, week 0, 3hr

description:
PH001w0h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: muscle, PH001, week 0, 24hr

description:
PH001w0h24_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: 6057825035_R04C01 CD4+


title: serum exosomes, PH238, week 16, rest

description:
PH238w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

source_name: serum exosomes

value: serum exosomes


title: serum exosomes, PH238, week 12, 3hr

description:
PH238w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825035_R03C01 CD4+


title: serum exosomes, PH238, week 12, pre

description:
PH238w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH238, week 12, 24hr

description:
PH238w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825015_R05C02 CD4+


title: 6057825015_R03C02 CD4+


title: muscle, PH001, week 12, 3hr

description:
PH001w12h3_sn
muscle_raw_counts.txt
muscle_TMM_counts.txt


title: serum exosomes, PH238, week 12, 0hr

description:
PH238w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6229009006_R01C02 CD4+


title: 6057825015_R02C02 CD4+


title: 6057825015_R01C02 CD4+


title: serum exosomes, PH238, week 0, 3hr

description:
PH238w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6229009006_R01C01 CD4+


title: serum exosomes, PH238, week 0, pre

description:
PH238w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825015_R04C01 CD4+

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)


title: serum exosomes, PH238, week 0, 0hr

description:
PH238w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825015_R02C01 CD4+


title: 6057825015_R03C01 CD4+


title: serum exosomes, PH237, week 12, 3hr

description:
PH237w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825015_R06C01 CD4+


title: serum exosomes, PH237, week 16, rest

description:
PH237w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH237, week 12, pre

description:
PH237w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH237, week 12, 24hr

description:
PH237w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825047_R05C02 CD4+


title: 6057825015_R01C01 CD4+


title: serum exosomes, PH237, week 12, 0hr

description:
PH237w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825047_R04C02 CD4+


title: serum exosomes, PH237, week 0, 3hr

description:
PH237w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825047_R03C02 CD4+


title: serum exosomes, PH237, week 0, 24hr

description:
PH237w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825015_R05C01 CD4+


title: 6229009033_R01C01 CD4+


title: serum exosomes, PH238, week 0, 24hr

description:
PH238w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH237, week 0, 0hr

description:
PH237w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH237, week 0, pre

description:
PH237w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825047_R06C01 CD4+


title: 6057825047_R04C01 CD4+


title: 6057825047_R03C01 CD4+


title: serum exosomes, PH229, week 12, 3hr

description:
PH229w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH229, week 16, rest

description:
PH229w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH229, week 12, pre

description:
PH229w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825047_R05C01 CD4+


title: 6057825047_R01C01 CD4+


title: serum exosomes, PH229, week 0, pre

description:
PH229w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R06C02 CD4+


title: serum exosomes, PH229, week 0, 3hr

description:
PH229w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH229, week 12, 0hr

description:
PH229w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R05C02 CD4+

description: Sample collected in BD Vacutainer CPT tube with sodium heparin (Fisher Scientific, Hampton, HG)


title: serum exosomes, PH229, week 0, 24hr

description:
PH229w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R04C02 CD4+


title: 6057825047_R02C02 CD4+


title: 6057825047_R01C02 CD4+


title: serum exosomes, PH227, week 16, rest

description:
PH227w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R02C02 CD4+


title: 6057825061_R01C02 CD4+


title: serum exosomes, PH227, week 12, pre

description:
PH227w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH227, week 12, 3hr

description:
PH227w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH229, week 12, 24hr

description:
PH229w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R05C01 CD4+


title: 6057825061_R06C01 CD4+


title: 6057825047_R02C01 CD4+


title: serum exosomes, PH227, week 12, 0hr

description:
PH227w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH227, week 12, 24hr

description:
PH227w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R04C01 CD4+


title: 6057825061_R03C01 CD4+


title: 6057825061_R02C01 CD4+


title: serum exosomes, PH227, week 0, 0hr

description:
PH227w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH227, week 0, pre

description:
PH227w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R01C01 CD4+


title: serum exosomes, PH227, week 0, 3hr

description:
PH227w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH227, week 0, 24hr

description:
PH227w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R06C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

source_name: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH225, week 16, rest

description:
PH225w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R05C02 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH229, week 0, 0hr

description:
PH229w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 6057825061_R03C02 CD4+


title: 7786915163_R04C02 whole blood


title: 7786915163_R03C02 whole blood


title: serum exosomes, PH225, week 12, pre

description:
PH225w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH225, week 12, 3hr

description:
PH225w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH225, week 12, 24hr

description:
PH225w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R02C02 whole blood


title: serum exosomes, PH225, week 12, 0hr

description:
PH225w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R01C02 whole blood


title: 7786915163_R06C01 whole blood


title: 7786915163_R05C01 whole blood


title: serum exosomes, PH225, week 0, pre

description:
PH225w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH225, week 0, 3hr

description:
PH225w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R04C01 whole blood


title: serum exosomes, PH225, week 0, 24hr

description:
PH225w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH225, week 0, 0hr

description:
PH225w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R03C01 whole blood


title: 7786915163_R02C01 whole blood


title: serum exosomes, PH224, week 16, rest

description:
PH224w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH224, week 12, pre

description:
PH224w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7786915163_R01C01 whole blood


title: serum exosomes, PH224, week 12, 3hr

description:
PH224w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246211_R05C01 whole blood


title: serum exosomes, PH224, week 12, 24hr

description:
PH224w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246211_R04C01 whole blood


title: serum exosomes, PH224, week 12, 0hr

description:
PH224w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246208_R05C02 whole blood


title: 7800246208_R06C02 whole blood


title: 7800246211_R02C01 whole blood


title: 7800246208_R04C02 whole blood


title: 7800246211_R01C01 whole blood


title: serum exosomes, PH224, week 0, 24hr

description:
PH224w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH216, week 12, pre

description:
PH216w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH224, week 0, 0hr

description:
PH224w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH216, week 16, rest

description:
PH216w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH224, week 0, pre

description:
PH224w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH224, week 0, 3hr

description:
PH224w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH216, week 12, 3hr

description:
PH216w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246208_R02C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246208_R06C01 whole blood


title: serum exosomes, PH216, week 12, 24hr

description:
PH216w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246208_R05C01 whole blood


title: serum exosomes, PH216, week 12, 0hr

description:
PH216w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH216, week 0, pre

description:
PH216w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246211_R06C01 whole blood


title: 7800246208_R04C01 whole blood


title: serum exosomes, PH216, week 0, 3hr

description:
PH216w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246211_R03C01 whole blood


title: 7800246208_R03C01 whole blood


title: 7800246208_R01C01 whole blood


title: serum exosomes, PH216, week 0, 0hr

description:
PH216w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R05C02 whole blood


title: serum exosomes, PH207, week 12, pre

description:
PH207w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R04C02 whole blood


title: serum exosomes, PH207, week 12, 0hr

description:
PH207w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R03C02 whole blood


title: serum exosomes, PH207, week 12, 24hr

description:
PH207w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R05C01 whole blood


title: serum exosomes, PH207, week 0, 0hr

description:
PH207w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R05C02 whole blood


title: serum exosomes, PH207, week 0, pre

description:
PH207w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R06C02 whole blood


title: 7800246207_R01C02 whole blood


title: serum exosomes, PH207, week 0, 24hr

description:
PH207w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH207, week 0, 3hr

description:
PH207w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R02C01 whole blood


title: serum exosomes, PH205, week 16, rest

description:
PH205w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R04C02 whole blood


title: 7800246205_R01C02 whole blood


title: serum exosomes, PH205, week 12, 24hr

description:
PH205w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH207, week 16, rest

description:
PH207w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH205, week 12, pre

description:
PH205w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH205, week 12, 0hr

description:
PH205w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R05C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: serum exosomes, PH205, week 12, 3hr

description:
PH205w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R04C01 whole blood


title: 7800246205_R06C01 whole blood


title: serum exosomes, PH205, week 0, pre

description:
PH205w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R02C01 whole blood


title: serum exosomes, PH205, week 0, 3hr

description:
PH205w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH207, week 12, 3hr

description:
PH207w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH205, week 0, 24hr

description:
PH205w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246207_R03C01 whole blood


title: serum exosomes, PH205, week 0, 0hr

description:
PH205w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246202_R06C02 whole blood


title: 7800246205_R03C02 whole blood


title: 7800246202_R04C02 whole blood


title: serum exosomes, PH204, week 12, 3hr

description:
PH204w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH204, week 12, pre

description:
PH204w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246202_R03C02 whole blood


title: serum exosomes, PH204, week 16, rest

description:
PH204w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH204, week 12, 24hr

description:
PH204w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246205_R01C01 whole blood


title: 7800246202_R01C02 whole blood


title: serum exosomes, PH204, week 12, 0hr

description:
PH204w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246202_R06C01 whole blood


title: serum exosomes, PH204, week 0, pre

description:
PH204w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246202_R05C01 whole blood


title: serum exosomes, PH204, week 0, 3hr

description:
PH204w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246202_R04C01 whole blood


title: serum exosomes, PH204, week 0, 24hr

description:
PH204w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246174_R05C02 whole blood


title: 7800246202_R03C01 whole blood


title: 7800246174_R06C02 whole blood


title: serum exosomes, PH202, week 12, 3hr

description:
PH202w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246174_R04C02 whole blood


title: 7800246202_R01C01 whole blood


title: serum exosomes, PH204, week 0, 0hr

description:
PH204w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 16, rest

description:
PH202w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 12, pre

description:
PH202w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246174_R01C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246174_R06C01 whole blood


title: 7800246174_R04C01 whole blood


title: 7800246173_R05C02 whole blood


title: serum exosomes, PH200, week 16, rest

description:
PH200w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246174_R02C01 whole blood


title: serum exosomes, PH202, week 0, 24hr

description:
PH202w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246174_R01C01 whole blood


title: 7800246202_R02C02 whole blood


title: serum exosomes, PH202, week 0, 3hr

description:
PH202w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 12, 0hr

description:
PH202w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 0, pre

description:
PH202w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH200, week 12, 3hr

description:
PH200w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH200, week 12, pre

description:
PH200w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 12, 24hr

description:
PH202w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH202, week 0, 0hr

description:
PH202w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH200, week 12, 24hr

description:
PH200w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246173_R04C02 whole blood


title: 7800246202_R05C02 whole blood


title: 7800246174_R02C02 whole blood


title: 7800246200_R06C02 whole blood


title: serum exosomes, PH200, week 12, 0hr

description:
PH200w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246200_R05C02 whole blood


title: 7800246200_R04C02 whole blood


title: serum exosomes, PH200, week 0, pre

description:
PH200w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH200, week 0, 3hr

description:
PH200w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246200_R03C02 whole blood


title: 7800246174_R03C01 whole blood


title: serum exosomes, PH200, week 0, 24hr

description:
PH200w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH200, week 0, 0hr

description:
PH200w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH199, week 16, rest

description:
PH199w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246200_R06C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246200_R05C01 whole blood


title: serum exosomes, PH199, week 12, 0hr

description:
PH199w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246200_R02C01 whole blood


title: serum exosomes, PH199, week 12, 3hr

description:
PH199w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R06C02 whole blood


title: 7800246200_R03C01 whole blood


title: 7800246200_R04C01 whole blood


title: 7800246196_R04C02 whole blood


title: serum exosomes, PH199, week 0, 0hr

description:
PH199w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH199, week 12, pre

description:
PH199w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH199, week 0, pre

description:
PH199w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R05C02 whole blood


title: 7800246200_R01C01 whole blood


title: serum exosomes, PH199, week 0, 3hr

description:
PH199w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R03C02 whole blood


title: serum exosomes, PH198, week 16, rest

description:
PH198w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R01C02 whole blood


title: serum exosomes, PH198, week 12, pre

description:
PH198w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246200_R01C02 whole blood


title: 7800246196_R04C01 whole blood


title: 7800246196_R02C01 whole blood


title: serum exosomes, PH198, week 0, pre

description:
PH198w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH198, week 12, 24hr

description:
PH198w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH198, week 12, 0hr

description:
PH198w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R01C01 whole blood


title: serum exosomes, PH198, week 0, 3hr

description:
PH198w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH199, week 12, 24hr

description:
PH199w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH199, week 0, 24hr

description:
PH199w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH198, week 0, 24hr

description:
PH198w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246195_R05C02 whole blood


title: serum exosomes, PH198, week 0, 0hr

description:
PH198w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246195_R02C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246195_R04C01 whole blood


title: 7800246195_R03C02 whole blood


title: 7800246195_R05C01 whole blood


title: serum exosomes, PH197, week 12, 3hr

description:
PH197w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH197, week 16, rest

description:
PH197w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246195_R03C01 whole blood


title: 7800246195_R02C01 whole blood


title: serum exosomes, PH197, week 12, 24hr

description:
PH197w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH197, week 12, pre

description:
PH197w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH197, week 12, 0hr

description:
PH197w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246196_R03C01 whole blood


title: serum exosomes, PH198, week 12, 3hr

description:
PH198w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R06C02 whole blood


title: 7800246193_R05C02 whole blood


title: serum exosomes, PH197, week 0, 3hr

description:
PH197w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R03C02 whole blood


title: 7800246193_R02C02 whole blood


title: serum exosomes, PH197, week 0, pre

description:
PH197w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH196, week 16, rest

description:
PH196w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH197, week 0, 0hr

description:
PH197w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH197, week 0, 24hr

description:
PH197w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R04C02 whole blood


title: 7800246193_R01C02 whole blood


title: 7800246193_R06C01 whole blood


title: serum exosomes, PH196, week 12, 3hr

description:
PH196w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R04C01 whole blood


title: 7800246193_R05C01 whole blood


title: serum exosomes, PH196, week 12, 24hr

description:
PH196w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R02C01 whole blood


title: 7800246192_R06C02 whole blood


title: serum exosomes, PH196, week 0, pre

description:
PH196w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246192_R05C02 whole blood


title: serum exosomes, PH196, week 0, 24hr

description:
PH196w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH196, week 0, 0hr

description:
PH196w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246193_R01C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246192_R03C02 whole blood


title: 7800246192_R02C02 whole blood


title: serum exosomes, PH195, week 16, rest

description:
PH195w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246192_R04C01 whole blood


title: serum exosomes, PH195, week 12, 24hr

description:
PH195w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH195, week 12, pre

description:
PH195w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246192_R06C01 whole blood


title: 7800246192_R03C01 whole blood


title: 7800246192_R05C01 whole blood


title: serum exosomes, PH195, week 12, 3hr

description:
PH195w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH195, week 0, pre

description:
PH195w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH195, week 0, 3hr

description:
PH195w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH196, week 12, pre

description:
PH196w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246179_R04C02 whole blood


title: 7800246179_R06C02 whole blood


title: serum exosomes, PH195, week 0, 24hr

description:
PH195w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH195, week 12, 0hr

description:
PH195w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH196, week 12, 0hr

description:
PH196w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH196, week 0, 3hr

description:
PH196w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246179_R02C02 whole blood


title: serum exosomes, PH195, week 0, 0hr

description:
PH195w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246179_R05C01 whole blood


title: 7800246179_R06C01 whole blood


title: serum exosomes, PH194, week 12, 3hr

description:
PH194w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246179_R04C01 whole blood


title: serum exosomes, PH194, week 12, 24hr

description:
PH194w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH194, week 16, rest

description:
PH194w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH194, week 12, pre

description:
PH194w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH194, week 0, 3hr

description:
PH194w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246179_R03C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246179_R02C01 whole blood


title: serum exosomes, PH194, week 12, 0hr

description:
PH194w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246178_R04C02 whole blood


title: 7800246179_R01C01 whole blood


title: serum exosomes, PH193, week 12, pre

description:
PH193w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH194, week 0, pre

description:
PH194w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246192_R01C01 whole blood


title: serum exosomes, PH194, week 0, 24hr

description:
PH194w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246178_R01C02 whole blood


title: serum exosomes, PH194, week 0, 0hr

description:
PH194w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246178_R05C01 whole blood


title: serum exosomes, PH193, week 12, 3hr

description:
PH193w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH193, week 12, 24hr

description:
PH193w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH193, week 12, 0hr

description:
PH193w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246178_R03C01 whole blood


title: 7800246178_R04C01 whole blood


title: 7800246178_R02C01 whole blood


title: 7800246179_R01C02 whole blood


title: 7800246178_R01C01 whole blood


title: serum exosomes, PH193, week 0, pre

description:
PH193w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R05C02 whole blood


title: 7800246178_R03C02 whole blood


title: serum exosomes, PH193, week 0, 24hr

description:
PH193w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH193, week 16, rest

description:
PH193w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R03C02 whole blood


title: serum exosomes, PH193, week 0, 3hr

description:
PH193w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R04C02 whole blood


title: serum exosomes, PH191, week 12, pre

description:
PH191w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R06C01 whole blood


title: serum exosomes, PH191, week 12, 3hr

description:
PH191w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R04C01 whole blood


title: 7800246177_R05C01 whole blood


title: 7800246177_R02C02 whole blood


title: serum exosomes, PH191, week 12, 24hr

description:
PH191w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH191, week 12, 0hr

description:
PH191w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7800246177_R02C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7800246177_R03C01 whole blood


title: serum exosomes, PH191, week 0, pre

description:
PH191w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH191, week 0, 3hr

description:
PH191w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920054_R06C02 whole blood


title: serum exosomes, PH191, week 0, 24hr

description:
PH191w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH193, week 0, 0hr

description:
PH193w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH189, week 12, pre

description:
PH189w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH191, week 0, 0hr

description:
PH191w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH191, week 16, rest

description:
PH191w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH189, week 16, rest

description:
PH189w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920054_R04C01 whole blood


title: 7810920054_R05C02 whole blood


title: 7810920054_R02C01 whole blood


title: 7810920054_R06C01 whole blood


title: serum exosomes, PH189, week 0, 3hr

description:
PH189w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH189, week 12, 0hr

description:
PH189w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920042_R04C02 whole blood


title: 7810920042_R06C02 whole blood


title: serum exosomes, PH189, week 0, 0hr

description:
PH189w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH189, week 12, 24hr

description:
PH189w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH189, week 12, 3hr

description:
PH189w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920042_R05C02 whole blood


title: serum exosomes, PH189, week 0, 24hr

description:
PH189w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH187, week 16, rest

description:
PH187w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920054_R04C02 whole blood


title: 7800246177_R01C01 whole blood


title: 7810920042_R03C02 whole blood


title: 7810920042_R02C02 whole blood


title: serum exosomes, PH189, week 0, pre

description:
PH189w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH187, week 12, 3hr

description:
PH187w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920042_R01C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: serum exosomes, PH187, week 12, 24hr

description:
PH187w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920054_R01C02 whole blood


title: 7810920042_R05C01 whole blood


title: serum exosomes, PH187, week 12, 0hr

description:
PH187w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920054_R03C01 whole blood


title: 7810920042_R04C01 whole blood


title: serum exosomes, PH187, week 0, pre

description:
PH187w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920042_R01C01 whole blood


title: serum exosomes, PH187, week 0, 3hr

description:
PH187w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920041_R06C02 whole blood


title: serum exosomes, PH187, week 0, 24hr

description:
PH187w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH187, week 12, pre

description:
PH187w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920041_R04C02 whole blood


title: 7810920041_R02C02 whole blood


title: 7810920041_R01C02 whole blood


title: serum exosomes, PH186, week 12, 3hr

description:
PH186w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH187, week 0, 0hr

description:
PH187w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: AGS EBV cells, Antag3

city: Hengyang

first: Jing

last: Yang

state: Hunan Province

address: 28# Changsheng west Road, Zhengxiang District

department: The First Affiliated Hospital of University of South China

country: China

institute: South China University

description: Library name: Sample6

library_source: transcriptomic

data_processing:
The clean data obtained were aligned to the reference genome sequence using HISAT (v2.2.1) software.
The sequence reads were trimmed using the filtering software SOAPnuke (v1.6.5) to remove adapters reads, reads with unknown base N content greater than 1%, and low-quality reads (reads with a quality value lower than 15 and a ratio of bases in the total number of bases in the reads greater than 40% are low-quality reads) to obtain clean data.
The clean data obtained were aligned to the reference gene sequence using Bowtie2 (v2.4.5) software, and then the gene expression level of each sample was calculated using the RESM (v1.3.1) software package.
Assembly: GRCh38
Supplementary files format and content: tab-delimited text file includes raw counts for each Sample
Supplementary files format and content: csv files include FPKM values for each Sample

molecule: total RNA

source_name: stomach

growth_protocol: AGS-EBV (EBV-positive gastric cancer cell line,Strain Akata)cells were cultured with Ham’s F-12 medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin, additionally administered 400 ug/ml of G418 to retain the EBV genome.

extract_protocol:
Total RNAs of AGS EBV cells transfected with EBV-miR-BART19-3p antagomir and NC antagomir were isolated using TRIzol (Invitrogen). Then, the quality of RNA was checked using an Agilent2100 RNA Nano 6000 Assay Kit.
Library preparation is performed using Optimal Dual-mode mRNA Library Prep Kit (BGI-Shenzhen, China). A certain amount of RNA are denatured at suitable temperature to open the secondary structure, and mRNA is enriched by oligo (dT) attached magnetic beads. After reacting at a suitable temperature for a fixed time period, RNAs are fragmented with fragmentation reagents. Then First-strand cDNA is generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. The synthesized double strand cDNA is subject to end repairment reaction. After cDNA end repairment, a single ‘A’ nucleotide is added to the 3’ ends of the blunt fragments through A tailing reaction. Then the reaction system for adaptor ligation configured to ligate adaptors with the cDNAs, and finally, the library products are amplified through PCR reaction and subjected to quality control. Next, the single-stranded library products are produced via denaturation. The reaction system for circularization is set up to get the single-stranded cyclized DNA products. Any uncyclized single stranded linear DNA molecules will be digested. The final single strand circularized library is amplified with phi29 and rolling circle amplification (RCA) to make DNA nanoball (DNB) which carries more than 300 copies of the initial single stranded circularized library molecule. The DNBs are loaded into the patterned nanoarray and PE 100/150 bases reads are generated on G400/T7/T10 platform (BGI-Shenzhen, China).

treatment_protocol: The AGS EBV cells was  transfected  with  100nM NC antagomir or 100nM  EBV-miR-BART19-3p antagomir respectively utilizing Lipofectamine 3000 (Invitrogen) for 48 hours.

value: stomach

tag: cell line

value: AGS EBV

tag: cell type

value: EBV-positive gastric cancer cell line

tag: genotype

value: BART19-5p knocked down

value: transfectied with BART19-3p antagomir

tag: batch


title: serum exosomes, PH186, week 0, 3hr

description:
PH186w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH186, week 12, 24hr

description:
PH186w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920041_R05C02 whole blood


title: serum exosomes, PH186, week 12, pre

description:
PH186w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH186, week 12, 0hr

description:
PH186w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH186, week 16, rest

description:
PH186w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 16

value: rest


title: serum exosomes, PH186, week 0, pre

description:
PH186w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH186, week 0, 24hr

description:
PH186w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH186, week 0, 0hr

description:
PH186w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920042_R03C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

value: M


title: 7810920041_R04C01 whole blood

value: Y


title: AGS EBV cells, Antag2

description: Library name: Sample5

value: BART19-4p knocked down


title: serum exosomes, PH171, week 12, pre

description:
PH171w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD

value: week 12


title: AGS EBV cells, Antag1

description: Library name: Sample4

value: BART19-3p knocked down


title: serum exosomes, PH171, week 16, rest

description:
PH171w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920041_R02C01 whole blood


title: 7810920041_R01C01 whole blood


title: serum exosomes, PH171, week 12, 3hr

description:
PH171w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: AGS EBV cells, Antag NC3

description: Library name: Sample3

value: WT

value: transfectied with NC antagomir


title: serum exosomes, PH171, week 12, 24hr

description:
PH171w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes

value: Male


title: 7810920040_R06C02 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: 7810920041_R03C02 whole blood

value: F


title: serum exosomes, PH171, week 12, 0hr

description:
PH171w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: AGS EBV cells, Antag NC2

description: Library name: Sample2

value: stomach

value: AGS EBV

value: EBV-positive gastric cancer cell line


title: 7810920040_R05C02 whole blood


title: serum exosomes, PH171, week 0, pre

description:
PH171w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 0

value: pre


title: AGS EBV cells, Antag NC1

description: Library name: Sample1


title: serum exosomes, PH171, week 0, 3hr

description:
PH171w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH171, week 0, 24hr

description:
PH171w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920040_R03C02 whole blood

value: M

value: N


title: serum exosomes, PH169, week 16, rest

description:
PH169w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT

value: week 16

value: rest


title: serum exosomes, PH169, week 12, pre

description:
PH169w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: serum exosomes, PH169, week 12, 3hr

description:
PH169w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH169, week 12, 24hr

description:
PH169w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920040_R02C02 whole blood


title: serum exosomes, PH169, week 12, 0hr

description:
PH169w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920040_R06C01 whole blood

value: Y


title: serum exosomes, PH169, week 0, pre

description:
PH169w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, DMEM (D), Replicate 3

city: Princeton

first: Celeste

last: Nelson

address: 25 William St

institute: Princeton University

description: Library name: DMEM (D), R3

data_processing:
STAR was used to aligned reads to the human reference genome (GRCh38.p14), and HTSeq-Count was used for transcriptome quantification.
The R package DESeq2 was used to normalize the raw counts and determine differentially expressed genes.
Normalized counts were transformed into regularized log for variance stabilization before performing principal component analysis and Z-score heatmaps.
Assembly: human reference genome GRCh38.p14
Supplementary files format and content: txt file includes raw counts for each sample

growth_protocol: MDA-MB-231 human breast cancer cells (ATCC) were maintained in a humidified incubator at 37℃ and 5% CO2 in one of six different media conditions: baseline (A), high-ketone (B), high-insulin (C), high-fat (F) and high-glucose (G), and DMEM (D). Specifically, cells were cultured in either DMEM/F12 medium (Hyclone) supplemented with 10% fetal bovine serum (FBS, R&D Systems) and 1% gentamicin (Gibco), or human plasma-like medium (HPLM) supplemented with 10% FBS dialyzed by ultrafiltration (Sigma-Aldrich), 1% gentamicin (Gibco), and the following additives: 5-ng/mL bovine pancreas insulin (Sigma-Aldrich; post-prandial); 10-mM D-glucose (Sigma- Aldrich; diabetic); 2-mM DL-β-hydroxybutyric acid sodium salt (BHB; Sigma-Aldrich; ketogenic); or 4% (w/v) lipid-rich bovine serum albumin (BSA, AlbuMAXTM I; Gibco; high fat.

extract_protocol:
Cells were cultured in six different media conditions in a 6-well tissue-culture plate at a density of 200,000 cells/well. After 72 hours, RNA was extracted and purified using an RNeasy Mini Kit (Qiagen) according to the manufacturer’s protocol.
RNA-Seq Directional Library Prep on Apollo 324 Robot. NovaSeq SP 100 nucleotide Flowcell v1.5

value: Human triple-negative breast cancer

value: DMEM


title: MDA-MB-231, High-fat (F), Replicate 3

description: Library name: High-fat (F), R3

value: High-fat


title: MDA-MB-231, DMEM (D), Replicate 2

description: Library name: DMEM (D), R2


title: MDA-MB-231, DMEM (D), Replicate 1

description: Library name: DMEM (D), R1


title: 7810920040_R04C01 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: 7810920041_R05C01 whole blood


title: serum exosomes, PH169, week 0, 24hr

description:
PH169w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes

value: Male


title: serum exosomes, PH169, week 0, 3hr

description:
PH169w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-fat (F), Replicate 2

description: Library name: High-fat (F), R2


title: serum exosomes, PH169, week 0, 0hr

description:
PH169w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH168, week 16, rest

description:
PH168w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Female


title: 7810920040_R04C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

value: F


title: serum exosomes, PH168, week 12, pre

description:
PH168w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-fat (F), Replicate 1

description: Library name: High-fat (F), R1


title: 7810920040_R02C01 whole blood


title: serum exosomes, PH171, week 0, 0hr

description:
PH171w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD

value: week 0


title: serum exosomes, PH168, week 12, 3hr

description:
PH168w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-glucose (G), Replicate 3

description: Library name: High-glucose (G), R3

value: High-glucose


title: 7810920039_R06C02 whole blood


title: serum exosomes, PH168, week 12, 0hr

description:
PH168w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-glucose (G), Replicate 2

description: Library name: High-glucose (G), R2


title: serum exosomes, PH168, week 0, pre

description:
PH168w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: pre


title: 7810920039_R03C02 whole blood

value: N


title: serum exosomes, PH168, week 0, 3hr

description:
PH168w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT


title: serum exosomes, PH168, week 0, 24hr

description:
PH168w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920039_R05C01 whole blood

value: M


title: MDA-MB-231, High-glucose (G), Replicate 1

description: Library name: High-glucose (G), R1


title: serum exosomes, PH168, week 0, 0hr

description:
PH168w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920040_R03C01 whole blood


title: serum exosomes, PH164, week 12, pre

description:
PH164w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: MDA-MB-231, High-insulin (C), Replicate 2

description: Library name: High-insulin (C), R2

value: High-insulin


title: serum exosomes, PH164, week 12, 3hr

description:
PH164w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-insulin (C), Replicate 1

description: Library name: High-insulin (C), R1

value: Human triple-negative breast cancer


title: 7810920039_R03C01 whole blood


title: serum exosomes, PH164, week 12, 24hr

description:
PH164w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920039_R02C01 whole blood


title: serum exosomes, PH164, week 12, 0hr

description:
PH164w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH164, week 0, pre

description:
PH164w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920039_R01C01 whole blood

value: Y


title: MDA-MB-231, High-insulin (C), Replicate 3

description: Library name: High-insulin (C), R3


title: MDA-MB-231, High-ketone (B), Replicate 3

description: Library name: High-ketone (B), R3

value: High-ketone


title: serum exosomes, PH164, week 0, 3hr

description:
PH164w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH168, week 12, 24hr

description:
PH168w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, High-ketone (B), Replicate 2

description: Library name: High-ketone (B), R2


title: 7810920030_R03C02 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH164, week 0, 24hr

description:
PH164w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes


title: serum exosomes, PH164, week 0, 0hr

description:
PH164w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Male


title: serum exosomes, PH162, week 16, rest

description:
PH162w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 16

value: rest


title: serum exosomes, PH162, week 12, pre

description:
PH162w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD


title: MDA-MB-231, High-ketone (B), Replicate 1

description: Library name: High-ketone (B), R1


title: 7810920030_R02C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7810920039_R04C01 whole blood


title: serum exosomes, PH164, week 16, rest

description:
PH164w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH162, week 12, 3hr

description:
PH162w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, baseline (A), Replicate 3

description: Library name: Baseline (A), R3

value: Baseline


title: serum exosomes, PH162, week 12, 24hr

description:
PH162w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920030_R01C02 whole blood

value: F


title: serum exosomes, PH162, week 12, 0hr

description:
PH162w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920030_R06C01 whole blood


title: serum exosomes, PH162, week 0, pre

description:
PH162w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 0

value: pre


title: MDA-MB-231, baseline (A), Replicate 2

description: Library name: Baseline (A), R2


title: serum exosomes, PH162, week 0, 3hr

description:
PH162w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: MDA-MB-231, baseline (A), Replicate 1

description: Library name: Baseline (A), R1


title: serum exosomes, PH162, week 0, 24hr

description:
PH162w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920030_R05C01 whole blood

value: N


title: 7810920030_R03C01 whole blood


title: serum exosomes, PH156, week 12, pre

description:
PH156w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT

value: Female


title: 7810920030_R04C01 whole blood


title: serum exosomes, PH156, week 16, rest

description:
PH156w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH162, week 0, 0hr

description:
PH162w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH156, week 12, 3hr

description:
PH156w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: serum exosomes, PH156, week 12, 0hr

description:
PH156w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: H9_differentiation_day30_rep1

city: Shanghai

first: Li

address: 131 Dong-An Road

department: Institutes of Biological Sciences

institute: Fudan University

description: Library name: Sample4

data_processing:
Fastqc (v0.11.9) was used to evaluate the quality of all raw reads and adapter-trimmed reads by Trimmomatics40 (v0.32, parameters: TruSeq3-SE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:30). Next, the reads were aligned to the human 45S rRNA reference (NR_046235.3) to further remove rRNA using Bowtie41 (v1.1.2, parameters: -m 1 -k 1 -v 2 -S -p 12), aligned to hg38 using HISAT242 (v2.2.1, parameters: --no-softclip --rna-strandness RF --score-min L,-16,0 --mp 7,7 --rfg 0,7 --rdg 0,7 --max-seeds 20 -k 10 -t -p 12), and then converted to BAM files using samtools43 (v1.6). Gene-level quantification was computed by featureCounts44 (v2.0.1, parameters: -s 2 -p --fraction -O -T 16 -t exon -g gene_id).
Assembly: hg38
Supplementary files format and content: tab-delimited text file of read count matrix for samples

source_name: differentiated D30 H9/arcuate neuron

growth_protocol: H9 cells were grown on 6 well coated with matrigel. The neuron differentiation procedure started when H9 cells reached 95% to 100% confluence. H9 cells were cultured in KSR medium with 100 ng/ml SHH (R&D Systems; cat. no. 1845-SH), 2 μM purmorphamine (Selleckchem; cat. no. S3042), 10 μM SB431542 (Selleckchem; cat. no. S1067), and 2.5 μM LDN-193189 (Selleckchem; cat. no. S2618) and the medium changed daily from day 1 to day 4. The medium was changed to KSR medium and N2 medium from 3:1, 1:1 to 1:3 ratio and supplemented with 100 ng/ml SHH, 2 μM purmorphamine, 10 μM SB431542, and 2.5 μM LDN-193189 from day 5 to day 7. On day 8, the medium was changed to N2 medium supplemented with 100 ng/ml SHH, 2 μM purmorphamine, 10 μM SB431542, and 2.5 μM LDN-193189. From day 9 to day 12, the cells were cultured in N2 medium supplemented with 1× B-27 and 10 μM DAPT. The medium needed to be replaced daily. On day 10, we coated 0.01% poly-L-ornithine on new 10 cm dishes and the next day, aspirated poly-L-ornithine, washed the plates with sterile distilled water four times, added matrigel to each well, and incubated the plates overnight at 37°C. On day 12, the differentiated cells were treated with accutase for 8 min at 37°C, then added 2 ml N2 medium and detached all cells by repeatedly pipetting. After pelleting cells by centrifugation for 3 min at 800 rpm and aspirating the supernatant, N2 medium supplemented with B-27 and 10 μM ROCK inhibitor were used to suspend cell pallets. 6 million cells were seeded into every 10 cm dish coated with matrigel. From day 13 to day 16, the N2 medium supplemented with B-27 and 10 μM DAPT was replaced daily. From day 17, the medium was changed to N2 medium supplemented with B-27 and 20 ng/ml BDNF every two days until fully differentiated neurons were observed at day 30.

extract_protocol:
Total RNAs from the cultured cells were extracted with TRizol Reagent (Invitrogen).
The total RNA was processed for ribosomal RNAs depletion and library preparation with Illumina TruSeqⓇ Stranded Total RNA LT Sample Prep Kit, and sequenced with Illumina NovaSeq 6000 system at Sequanta Technologies.

value: differentiated D30 H9/arcuate neuron


title: H9_differentiation_day30_rep3

description: Library name: Sample6


title: serum exosomes, PH156, week 0, pre

description:
PH156w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH156, week 12, 24hr

description:
PH156w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: H9_differentiation_day0_rep3

description: Library name: Sample3


title: 7810920028_R06C02 whole blood

value: M


title: serum exosomes, PH156, week 0, 3hr

description:
PH156w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH156, week 0, 24hr

description:
PH156w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: H9_differentiation_day0_rep2

description: Library name: Sample2


title: serum exosomes, PH156, week 0, 0hr

description:
PH156w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH154, week 16, rest

description:
PH154w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH154, week 12, pre

description:
PH154w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: H9_differentiation_day0_rep1

description: Library name: Sample1


title: 7810920028_R03C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: serum exosomes, PH154, week 12, 3hr

description:
PH154w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R04C02 whole blood


title: serum exosomes, PH154, week 12, 24hr

description:
PH154w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: H9_differentiation_day30_rep2

description: Library name: Sample5


title: serum exosomes, PH154, week 12, 0hr

description:
PH154w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R02C02 whole blood


title: serum exosomes, PH154, week 0, pre

description:
PH154w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920030_R02C01 whole blood


title: 7810920028_R06C01 whole blood

value: Y


title: serum exosomes, PH154, week 0, 3hr

description:
PH154w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH154, week 0, 0hr

description:
PH154w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH153, week 16, rest

description:
PH153w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R05C01 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH153, week 12, pre

description:
PH153w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes


title: 7810920028_R03C01 whole blood


title: serum exosomes, PH153, week 12, 24hr

description:
PH153w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Male


title: serum exosomes, PH153, week 12, 0hr

description:
PH153w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R02C01 whole blood


title: serum exosomes, PH153, week 0, pre

description:
PH153w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R04C01 whole blood


title: serum exosomes, PH153, week 0, 3hr

description:
PH153w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R05C02 whole blood


title: serum exosomes, PH153, week 0, 0hr

description:
PH153w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH153, week 0, 24hr

description:
PH153w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920028_R01C01 whole blood


title: serum exosomes, PH151, week 12, pre

description:
PH151w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH151, week 16, rest

description:
PH151w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 16


title: serum exosomes, PH151, week 12, 24hr

description:
PH151w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: RNA-Seq CK Rep1

city: Iowa City

first: Jeffery

middle: L

last: Meier

state: IA

address: SW34 GH, Department of Internal Medicine, University of Iowa. 200 Hawkins Drive

department: Departments of Internal Medicine and Epidemiology

institute: University of Iowa and Iowa City Veterans Affairs Health Care System

description: Library name: CK Rep1

data_processing:
Adapter trimming using trim_galore 0.6.
The trimmed reads were then mapped to a combined reference genome (hg38 and HCMV Towne WT FJ616285.1, hg38 and Towne N1, hg38 and Towne N2, or hg38 and Towne CK) using the stranded/splicing-aware aligner HISAT2 (http://daehwankimlab.github.io/hisat2/manual/).
Alignment files were subsequently converted to bigWig format.
Assembly: hg38 and HCMV Towne WT FJ616285.1, hg38 and Towne N1, hg38 and Towne N2, or hg38 and Towne CK
Supplementary files format and content: bigwig files containing RNA-Seq pileups

source_name: HCMV Towne CK BAC infected 96 h

growth_protocol: Culturing NT2 in DMEM with 10% FBS results in a sizeable proportion of cells expressing HCMV MIE protein within 24 hours of infection. Adding 10 µM retinoic acid (Sigma) further differentiates these cells. For the experiments in differentiated NT2 (D-NT2), the NT2 were cultured with retinoic acid for 10 days. On the day before the infection, the growth medium containing retinoic acid was removed, and the cells were cultured in DMEM with 10% FBS.

extract_protocol:
Total RNA was isolated from D-NT2 cells, either uninfected or infected with HCMV Towne WT, N1, NB, and CK viruses for 96 hours, using TRIzol (Invitrogen, 15596026) according to the manufacturer’s protocol.
Total RNA-Seq libraries were prepared using the TruSeq-stranded total RNA library prep kit for Human/Mouse/Rat (Illumina, 200020596).

treatment_protocol: Cells were infected with the indicated virus for 96 hours. Cells were treated with the PFA or appropriate vehicle controls for the indicated times before harvest.

value: neuronal cells


title: RNA-Seq CK Rep2

description: Library name: CK Rep2


title: 7810920025_R05C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: serum exosomes, PH151, week 12, 3hr

description:
PH151w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD


title: 7810920025_R04C02 whole blood


title: serum exosomes, PH154, week 0, 24hr

description:
PH154w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH151, week 0, pre

description:
PH151w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH153, week 12, 3hr

description:
PH153w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH151, week 12, 0hr

description:
PH151w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH151, week 0, 24hr

description:
PH151w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH151, week 0, 3hr

description:
PH151w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: RNA-Seq NB Rep1

description: Library name: NB Rep1

source_name: HCMV Towne NB BAC infected 96 h


title: 7810920025_R02C02 whole blood


title: serum exosomes, PH151, week 0, 0hr

description:
PH151w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH148, week 12, pre

description:
PH148w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH148, week 16, rest

description:
PH148w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: rest


title: serum exosomes, PH148, week 12, 24hr

description:
PH148w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH148, week 12, 3hr

description:
PH148w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920025_R06C02 whole blood

value: F


title: RNA-Seq WT PFA Rep2

description: Library name: WT PFA Rep2

source_name: HCMV Towne WT BAC infected 96 h

value: Cells were treated with PFA 96h.


title: RNA-Seq N1 Rep1

description: Library name: N1 Rep1

source_name: HCMV Towne N1 BAC infected 96 h


title: RNA-Seq N1 Rep2

description: Library name: N1 Rep2


title: 7810920025_R04C01 whole blood


title: serum exosomes, PH148, week 12, 0hr

description:
PH148w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH148, week 0, pre

description:
PH148w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 0

value: pre


title: RNA-Seq WT PFA Rep1

description: Library name: WT PFA Rep1


title: serum exosomes, PH148, week 0, 3hr

description:
PH148w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT


title: 7810920025_R03C01 whole blood


title: RNA-Seq NB Rep2

description: Library name: NB Rep2


title: serum exosomes, PH148, week 0, 24hr

description:
PH148w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH148, week 0, 0hr

description:
PH148w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH147, week 12, 3hr

description:
PH147w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Female


title: 7810920025_R02C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

value: N


title: 7810920025_R01C01 whole blood


title: serum exosomes, PH147, week 12, pre

description:
PH147w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: RNA-Seq WT Rep2

description: Library name: WT Rep2


title: RNA-Seq WT Rep1

description: Library name: WT Rep1


title: serum exosomes, PH147, week 16, rest

description:
PH147w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH147, week 12, 24hr

description:
PH147w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: RNA-Seq Mock Rep2

description: Library name: Mock Rep2

source_name: D-NT2 Mock


title: serum exosomes, PH147, week 12, 0hr

description:
PH147w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920025_R06C01 whole blood

value: M


title: RNA-Seq Mock Rep1

description: Library name: Mock Rep1


title: 7810920023_R05C02 whole blood

value: Y


title: serum exosomes, PH147, week 0, 3hr

description:
PH147w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920025_R01C02 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: Exp6 UL87HF 96 hpi Flavo dTAG

description: Library name: Sample 43

data_processing:
Adapter trimming using trim_galore 0.6.
Alignment of trimmed reads to concatenated hg38 (human), FJ616285.1 (Towne) and JQCY02.1 (spodoptera) using bowtie 1.2.2.
Deduplication of mapped reads according to unique molecular identifiers using dedup (https://github.com/P-TEFb/dedup).
Conversion of deduped bed files into bedGraph and bigwig using bedtools genomecov and kentUtils bedGraphToBigWig programs.
Assembly: hg38 (human), FJ616285.1 (Towne) and JQCY02.1 (spodoptera)
Supplementary files format and content: bigwig files containing PRO-Seq pileups
Library strategy: PRO-Seq

source_name: HCMV Towne UL87HF BAC infected 96 h

growth_protocol: Culturing NT2 in DMEM with 10% FBS results in a sizeable proportion of cells expressing HCMV MIE protein within 24 hours of infection. Adding 10 µM retinoic acid (Sigma) further differentiates these cells. For the experiments in differentiated NT2 (D-NT2), the NT2 were cultured with retinoic acid for 10 days. On the day before the infection, the growth medium containing retinoic acid was removed, and the cells were cultured in DMEM with 10% FBS. HFF were isolated and cultured as described in the manuscript. Cells were maintained in Minimum Essential Medium and grown to confluence for at least one week before infection. All HFF used for these studies were at passage number ≤ 6.

extract_protocol:
Rapid nuclei isolation steps were performed on wet ice using ice-cold buffers as previously described in Li et. al. (2020, PMID: 32251483).
Library construction is detailed in the manuscript and was carried out as previously described by  Li et. al. (2020, PMID: 32251483), with some modifications.

treatment_protocol: Cells were infected with the indicated virus for the indicated duration. Cells were treated with the indicated drugs (dTAG, Flavo, and/or PFA) or appropriate vehicle controls for the indicated times during the final hours of infection before harvest.

value: Cells were treated with dTAG 6h and Flavo 1 h during the final hours of infection before harvest.


title: serum exosomes, PH147, week 0, 24hr

description:
PH147w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes


title: 7810920023_R04C02 whole blood


title: serum exosomes, PH147, week 0, pre

description:
PH147w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH146, week 16, rest

description:
PH146w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 16


title: 7810920023_R02C02 whole blood


title: serum exosomes, PH146, week 12, pre

description:
PH146w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920023_R01C02 whole blood


title: serum exosomes, PH146, week 12, 3hr

description:
PH146w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH146, week 12, 24hr

description:
PH146w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp6 UL87HF 96 hpi No Flavo dTAG

description: Library name: Sample 41

value: neuronal cells


title: Exp6 UL87HF 96 hpi No Flavo Ctrl

description: Library name: Sample 40


title: 7810920023_R05C01 whole blood


title: serum exosomes, PH146, week 0, pre

description:
PH146w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH146, week 12, 0hr

description:
PH146w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp5 D-NT2 NB BAC2 96 hpi Flavo

description: Library name: Sample 39

value: Cells were treated with Flavo 1 h during the final hours of infection before harvest.


title: serum exosomes, PH146, week 0, 3hr

description:
PH146w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920023_R03C02 whole blood


title: serum exosomes, PH146, week 0, 24hr

description:
PH146w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp5 D-NT2 NB BAC1 96 hpi Flavo

description: Library name: Sample 38


title: serum exosomes, PH146, week 0, 0hr

description:
PH146w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920023_R04C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: serum exosomes, PH145, week 16, rest

description:
PH145w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: rest


title: Exp5 D-NT2 WT 96 hpi Flavo

description: Library name: Sample 37


title: serum exosomes, PH145, week 12, pre

description:
PH145w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920023_R01C01 whole blood


title: serum exosomes, PH145, week 12, 24hr

description:
PH145w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp5 HFF NB BAC2 96 hpi Flavo

description: Library name: Sample 36

value: HFF

value: Human foreskin fibroblasts


title: serum exosomes, PH147, week 0, 0hr

description:
PH147w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD

value: week 0


title: serum exosomes, PH145, week 12, 3hr

description:
PH145w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT


title: Exp6 UL87HF 96 hpi Flavo Ctrl

description: Library name: Sample 42


title: 7810920023_R02C01 whole blood

value: F


title: serum exosomes, PH145, week 12, 0hr

description:
PH145w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Female


title: Exp5 HFF NB BAC1 96 hpi Flavo

description: Library name: Sample 35


title: 7810920022_R06C02 whole blood


title: serum exosomes, PH145, week 0, pre

description:
PH145w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: pre


title: 7810920022_R05C02 whole blood

value: M


title: serum exosomes, PH145, week 0, 3hr

description:
PH145w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp5 HFF WT 96 hpi Flavo

description: Library name: Sample 34


title: serum exosomes, PH145, week 0, 0hr

description:
PH145w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920023_R06C01 whole blood

value: Y


title: serum exosomes, PH145, week 0, 24hr

description:
PH145w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920022_R04C02 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH144, week 16, rest

description:
PH144w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Male


title: Exp4 D-NT2 IE2F 96 hpi Flavo dTAG

description: Library name: Sample 33

source_name: HCMV Towne IE2F BAC infected 96 h

value: Cells were treated with dTAG 6h and Flavo 1 h during the final hours of infection before harvest.


title: 7810920022_R03C02 whole blood


title: serum exosomes, PH144, week 12, 3hr

description:
PH144w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes

value: week 12


title: serum exosomes, PH144, week 12, 24hr

description:
PH144w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH144, week 12, pre

description:
PH144w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp4 D-NT2 IE2F 96 hpi No Flavo dTAG

description: Library name: Sample 31

value: neuronal cells

value: Cells were treated with dTAG 6h during the final hours of infection before harvest.


title: serum exosomes, PH144, week 12, 0hr

description:
PH144w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920022_R02C02 whole blood


title: 7810920022_R01C02 whole blood


title: Exp4 D-NT2 IE2F 96 hpi No Flavo Ctrl

description: Library name: Sample 30


title: serum exosomes, PH144, week 0, pre

description:
PH144w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH144, week 0, 3hr

description:
PH144w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp4 D-NT2 CK 96 hpi Flavo

description: Library name: Sample 29

value: Cells were treated with Flavo 1 h during the final hours of infection before harvest.


title: serum exosomes, PH144, week 0, 24hr

description:
PH144w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH144, week 0, 0hr

description:
PH144w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920022_R06C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

value: N


title: serum exosomes, PH142, week 12, pre

description:
PH142w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD


title: 7810920022_R05C01 whole blood


title: serum exosomes, PH142, week 12, 3hr

description:
PH142w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp4 D-NT2 WT 96 hpi Flavo

description: Library name: Sample 27


title: serum exosomes, PH142, week 12, 24hr

description:
PH142w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920022_R04C01 whole blood


title: Exp4 D-NT2 IE2F 96 hpi Flavo Ctrl

description: Library name: Sample 32


title: serum exosomes, PH142, week 0, pre

description:
PH142w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 0


title: Exp4 D-NT2 CK 96 hpi

description: Library name: Sample 26


title: serum exosomes, PH142, week 0, 0hr

description:
PH142w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH142, week 0, 24hr

description:
PH142w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp4 D-NT2 WT 96 hpi PFA

description: Library name: Sample 25

value: Cells were treated with PFA 96h.


title: serum exosomes, PH140, week 16, rest

description:
PH140w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT

value: week 16

value: rest


title: Exp4 D-NT2 WT 96 hpi

description: Library name: Sample 24


title: 7810920022_R02C01 whole blood

value: M


title: 7810920022_R03C01 whole blood

value: Y


title: 7810920022_R01C01 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes

value: F


title: 7810920021_R06C02 whole blood


title: serum exosomes, PH140, week 12, 3hr

description:
PH140w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Female


title: serum exosomes, PH140, week 12, pre

description:
PH140w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes

value: pre


title: serum exosomes, PH142, week 16, rest

description:
PH142w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Male


title: serum exosomes, PH140, week 12, 24hr

description:
PH140w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: 7810920021_R04C02 whole blood


title: Exp3 D-NT2 UL87HF 96 hpi Flavo dTAG

description: Library name: Sample 23

value: neuronal cells

value: Cells were treated with dTAG 6h and Flavo 1 h during the final hours of infection before harvest.


title: Exp4 D-NT2 WT 96 hpi PFA Flavo

description: Library name: Sample 28

value: Cells were treated with PFA 96h and Flavo 1 h during the final hours of infection before harvest.


title: serum exosomes, PH142, week 12, 0hr

description:
PH142w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD


title: Exp3 D-NT2 UL87HF 96 hpi Flavo Ctrl

description: Library name: Sample 22

value: Cells were treated with Flavo 1 h during the final hours of infection before harvest.


title: Exp3 D-NT2 UL87HF 96 hpi No Flavo dTAG

description: Library name: Sample 21

value: Cells were treated with dTAG 6h during the final hours of infection before harvest.


title: 7810920021_R03C02 whole blood

value: N


title: serum exosomes, PH140, week 0, pre

description:
PH140w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT

value: week 0


title: 7810920021_R01C02 whole blood

value: M


title: serum exosomes, PH140, week 12, 0hr

description:
PH140w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH140, week 0, 24hr

description:
PH140w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH142, week 0, 3hr

description:
PH142w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp3 D-NT2 IE2F 96 hpi Flavo dTAG

description: Library name: Sample 19


title: Exp3 D-NT2 UL87HF 96 hpi No Flavo Ctrl

description: Library name: Sample 20


title: serum exosomes, PH139, week 12, 24hr

description:
PH139w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH139, week 12, pre

description:
PH139w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH140, week 0, 0hr

description:
PH140w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920021_R05C01 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted

value: WhiteBloodCells from Purple Top EDTA tubes

value: Y


title: 7810920021_R06C01 whole blood

value: F


title: Exp3 D-NT2 IE2F 96 hpi Flavo Ctrl

description: Library name: Sample 18


title: serum exosomes, PH139, week 12, 0hr

description:
PH139w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes

value: Female


title: serum exosomes, PH139, week 12, 3hr

description:
PH139w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH139, week 0, 3hr

description:
PH139w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp3 D-NT2 IE2F 96 hpi No Flavo dTAG

description: Library name: Sample 17


title: serum exosomes, PH140, week 0, 3hr

description:
PH140w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920021_R03C01 whole blood


title: serum exosomes, PH139, week 0, pre

description:
PH139w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: pre


title: serum exosomes, PH139, week 0, 24hr

description:
PH139w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH138, week 16, rest

description:
PH138w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 16

value: rest

value: Male


title: serum exosomes, PH139, week 16, rest

description:
PH139w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH138, week 12, 3hr

description:
PH138w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 12


title: 7810920021_R02C01 whole blood


title: Exp3 D-NT2 IE2F 96 hpi No Flavo Ctrl

description: Library name: Sample 16

value: neuronal cells


title: Exp2 D-NT2 N2 96 hpi Flavo

description: Library name: Sample 15

source_name: HCMV Towne N2 BAC infected 96 h

value: Cells were treated with Flavo 1 h during the final hours of infection before harvest.


title: 7810920020_R06C02 whole blood


title: serum exosomes, PH138, week 12, 24hr

description:
PH138w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH138, week 12, 0hr

description:
PH138w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH138, week 0, pre

description:
PH138w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920020_R04C02 whole blood


title: Exp2 D-NT2 N1 96 hpi Flavo

description: Library name: Sample 13


title: serum exosomes, PH138, week 0, 3hr

description:
PH138w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920021_R04C01 whole blood


title: serum exosomes, PH138, week 0, 24hr

description:
PH138w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH139, week 0, 0hr

description:
PH139w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: TRAD


title: Exp2 D-NT2 WT 96 hpi Flavo

description: Library name: Sample 12


title: serum exosomes, PH138, week 0, 0hr

description:
PH138w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp2 D-NT2 N2 96 hpi No Flavo

description: Library name: Sample 11


title: serum exosomes, PH137, week 16, rest

description:
PH137w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH137, week 12, pre

description:
PH137w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp2 D-NT2 NB 96 hpi No Flavo

description: Library name: Sample 10


title: Exp2 D-NT2 NB 96 hpi Flavo

description: Library name: Sample 14


title: serum exosomes, PH137, week 12, 3hr

description:
PH137w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp2 D-NT2 N1 96 hpi No Flavo

description: Library name: Sample 9


title: 7810920020_R01C02 whole blood

description: Sample collected in EDTA tube, DNA for methylation was extracted


title: 7810920020_R06C01 whole blood

value: N


title: 7810920020_R03C02 whole blood


title: 7810920020_R05C01 whole blood


title: Exp2 D-NT2 WT 96 hpi No Flavo

description: Library name: Sample 8


title: serum exosomes, PH137, week 0, 24hr

description:
PH137w0h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH137, week 12, 0hr

description:
PH137w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH137, week 12, 24hr

description:
PH137w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH137, week 0, 0hr

description:
PH137w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH137, week 0, 3hr

description:
PH137w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920020_R04C01 whole blood


title: Exp1 D-NT2 WT 72 hpi  PFA Flavo

description: Library name: Sample 7

source_name: HCMV Towne infected 72h

value: Cells were treated with PFA 72h and Flavo 1 h during the final hours of infection before harvest.


title: serum exosomes, PH136, week 16, rest

description:
PH136w16rst_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: HITT


title: serum exosomes, PH137, week 0, pre

description:
PH137w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: week 0


title: serum exosomes, PH136, week 12, pre

description:
PH136w12pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp1 D-NT2 WT 72 hpi  No PFA Flavo

description: Library name: Sample 6


title: 7810920020_R03C01 whole blood

value: WhiteBloodCells from Purple Top EDTA tubes


title: serum exosomes, PH136, week 12, 3hr

description:
PH136w12h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920020_R02C02 whole blood

value: Y


title: serum exosomes, PH136, week 12, 24hr

description:
PH136w12h24_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: serum exosomes, PH136, week 12, 0hr

description:
PH136w12h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: 7810920020_R02C01 whole blood

value: M


title: serum exosomes, PH136, week 0, pre

description:
PH136w0pre_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: serum exosomes


title: Exp1 D-NT2 WT 72 hpi  No PFA No Flavo

description: Library name: Sample 4


title: 7810920020_R01C01 whole blood

value: F


title: serum exosomes, PH136, week 0, 3hr

description:
PH136w0h3_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt

value: Female


title: serum exosomes, PH136, week 0, 0hr

description:
PH136w0h0_se
serum_exosomes_raw_counts.txt
serum_exosomes_TMM_counts.txt


title: Exp1 D-NT2 Mock Flavo

description: Library name: Sample 3


title: 7810920019_R05C02 whole blood


title: 7810920019_R06C02 whole blood


title: Exp1 D-NT2 WT 12 hpi  Flavo

description: Library name: Sample 2

source_name: HCMV Towne infected 12h