title: pituitary gland, HFD 12w, rep2

description: Library name: pit_12w_2


title: pituitary gland, HFD 12w, rep5

status: Public on Aug 23 2025

type: SRA

city: Toyama

first: Makito

last: Oku

address: 2630 Sugitani

department: Research Center for Pre-Disease Science

country: Japan

institute: University of Toyama

description: Library name: pit_12w_5

library_source: transcriptomic

data_processing:
FastQC version 0.11.7 was used for quality checking of the sequenced reads.
Trimmomatic version 0.38 was used to trim low-quality sequences and adapter sequences.
HISAT2 version 2.1.0 was used to map the trimmed reads to the reference genome mm10.
Samtools version 1.9 was used to convert Sequence Alignment Map (SAM) format to Binary Alignment Map (BAM) format.
featureCounts version 1.6.3 was used to count the mapped reads using BAM files.
Assembly: GRCm38 (mm10)
Supplementary files format and content: Comma-separated values (CSV) file includes raw counts for each sample

molecule: total RNA

organism: Mus musculus

source_name: pituitary gland

growth_protocol: The mice were housed in groups of up to six per cage at 23 ± 3 °C on a 12-hour light (starting at 7:00 a.m.) and 12-hour dark cycle.

extract_protocol:
Total RNA was extracted using RNeasy Mini Kit and RNase-Free DNase Set (Qiagen, Hilden, Germany) according to the manufacturer’s instructions.
Total RNA was then subjected to polyadenylated mRNA purification using the NEBNext Poly(A) mRNA Magnetic Isolation Module (Cat No. E7490, New England Biolabs, Ipswich, Massachusetts, USA). Strand-specific RNA-seq libraries were then prepared using the NEBNext Ultra II Directional RNA Library Prep Kit (Cat No. E7760, New England Biolabs).

treatment_protocol: The mice were fed HFD (60 kcal% fat, D12492, Research Diets Inc., New Brunswick, New Jersey, USA) from eight weeks of age until the time of dissection.

tag: tissue

value: pituitary gland

tag: strain

tag: genotype

value: wild type

tag: Sex

value: male

tag: treatment

value: HFD 12w


title: pituitary gland, HFD 12w, rep1

description: Library name: pit_12w_1


title: pituitary gland, HFD 12w, rep6

description: Library name: pit_12w_6


title: pituitary gland, HFD 10w, rep3

description: Library name: pit_10w_3

value: HFD 10w


title: pituitary gland, HFD 10w, rep5

description: Library name: pit_10w_5


title: pituitary gland, HFD 10w, rep4

description: Library name: pit_10w_4


title: pituitary gland, HFD 10w, rep2

description: Library name: pit_10w_2


title: pituitary gland, HFD 8w, rep6

description: Library name: pit_8w_6

value: HFD 8w


title: pituitary gland, HFD 10w, rep1

description: Library name: pit_10w_1


title: pituitary gland, HFD 8w, rep4

description: Library name: pit_8w_4


title: pituitary gland, HFD 8w, rep1

description: Library name: pit_8w_1


title: pituitary gland, HFD 8w, rep2

description: Library name: pit_8w_2


title: soleus muscle, HFD 1d, rep3

description: Library name: sol_1d_3

source_name: soleus muscle

value: soleus muscle

value: HFD 1d


title: soleus muscle, HFD 0d, rep6

description: Library name: sol_0d_6

value: HFD 0d


title: pituitary gland, HFD 8w, rep3

description: Library name: pit_8w_3


title: pituitary gland, HFD 8w, rep5

description: Library name: pit_8w_5


title: pituitary gland, HFD 7w, rep6

description: Library name: pit_7w_6

value: HFD 7w


title: pituitary gland, HFD 7w, rep4

description: Library name: pit_7w_4


title: pituitary gland, HFD 7w, rep3

description: Library name: pit_7w_3


title: pituitary gland, HFD 7w, rep2

description: Library name: pit_7w_2


title: pituitary gland, HFD 7w, rep1

description: Library name: pit_7w_1


title: pituitary gland, HFD 12w, rep3

description: Library name: pit_12w_3


title: pituitary gland, HFD 6w, rep6

description: Library name: pit_6w_6

value: HFD 6w


title: pituitary gland, HFD 6w, rep5

description: Library name: pit_6w_5


title: pituitary gland, HFD 6w, rep4

description: Library name: pit_6w_4


title: pituitary gland, HFD 5w, rep5

description: Library name: pit_5w_5

value: HFD 5w


title: pituitary gland, HFD 5w, rep6

description: Library name: pit_5w_6


title: pituitary gland, HFD 6w, rep1

description: Library name: pit_6w_1


title: pituitary gland, HFD 5w, rep4

description: Library name: pit_5w_4


title: pituitary gland, HFD 6w, rep2

description: Library name: pit_6w_2


title: pituitary gland, HFD 5w, rep3

description: Library name: pit_5w_3


title: pituitary gland, HFD 5w, rep1

description: Library name: pit_5w_1


title: pituitary gland, HFD 5w, rep2

description: Library name: pit_5w_2


title: pituitary gland, HFD 4w, rep5

description: Library name: pit_4w_5

value: HFD 4w


title: pituitary gland, HFD 4w, rep6

description: Library name: pit_4w_6


title: soleus muscle, HFD 1d, rep4

description: Library name: sol_1d_4


title: pituitary gland, HFD 4w, rep2

description: Library name: pit_4w_2


title: pituitary gland, HFD 7w, rep5

description: Library name: pit_7w_5


title: pituitary gland, HFD 4w, rep1

description: Library name: pit_4w_1


title: pituitary gland, HFD 3w, rep5

description: Library name: pit_3w_5

value: HFD 3w


title: pituitary gland, HFD 3w, rep3

description: Library name: pit_3w_3


title: pituitary gland, HFD 3w, rep4

description: Library name: pit_3w_4


title: pituitary gland, HFD 3w, rep6

description: Library name: pit_3w_6


title: pituitary gland, HFD 3w, rep2

description: Library name: pit_3w_2


title: pituitary gland, HFD 3w, rep1

description: Library name: pit_3w_1


title: pituitary gland, HFD 2w, rep6

description: Library name: pit_2w_6

value: HFD 2w


title: pituitary gland, HFD 2w, rep5

description: Library name: pit_2w_5


title: pituitary gland, HFD 2w, rep3

description: Library name: pit_2w_3


title: pituitary gland, HFD 2w, rep4

description: Library name: pit_2w_4


title: pituitary gland, HFD 10d, rep6

description: Library name: pit_10d_6

value: HFD 10d


title: pituitary gland, HFD 2w, rep2

description: Library name: pit_2w_2


title: pituitary gland, HFD 6w, rep3

description: Library name: pit_6w_3


title: pituitary gland, HFD 10d, rep4

description: Library name: pit_10d_4


title: pituitary gland, HFD 4w, rep4

description: Library name: pit_4w_4


title: pituitary gland, HFD 10d, rep3

description: Library name: pit_10d_3


title: pituitary gland, HFD 10d, rep2

description: Library name: pit_10d_2


title: pituitary gland, HFD 10d, rep1

description: Library name: pit_10d_1


title: pituitary gland, HFD 1w, rep5

description: Library name: pit_1w_5

value: HFD 1w


title: pituitary gland, HFD 1w, rep3

description: Library name: pit_1w_3

value: pituitary gland


title: pituitary gland, HFD 1w, rep2

description: Library name: pit_1w_2

value: wild type


title: pituitary gland, HFD 3d, rep5

description: Library name: pit_3d_5

value: male

value: HFD 3d


title: pituitary gland, HFD 3d, rep6

description: Library name: pit_3d_6


title: pituitary gland, HFD 3d, rep1

description: Library name: pit_3d_1


title: pituitary gland, HFD 2w, rep1

description: Library name: pit_2w_1


title: pituitary gland, HFD 1d, rep5

description: Library name: pit_1d_5


title: pituitary gland, HFD 3d, rep3

description: Library name: pit_3d_3


title: pituitary gland, HFD 3d, rep4

description: Library name: pit_3d_4


title: pituitary gland, HFD 3d, rep2

description: Library name: pit_3d_2


title: pituitary gland, HFD 1d, rep1

description: Library name: pit_1d_1


title: pituitary gland, HFD 1d, rep4

description: Library name: pit_1d_4


title: pituitary gland, HFD 1d, rep3

description: Library name: pit_1d_3


title: pituitary gland, HFD 1d, rep6

description: Library name: pit_1d_6


title: pituitary gland, HFD 0d, rep4

description: Library name: pit_0d_4


title: pituitary gland, HFD 0d, rep2

description: Library name: pit_0d_2


title: pituitary gland, HFD 1w, rep6

description: Library name: pit_1w_6


title: pituitary gland, HFD 0d, rep5

description: Library name: pit_0d_5


title: pituitary gland, HFD 1w, rep4

description: Library name: pit_1w_4


title: pituitary gland, HFD 10d, rep5

description: Library name: pit_10d_5


title: pancreas, HFD 12w, rep3

description: Library name: panc_12w_3

source_name: pancreas

value: pancreas

value: HFD 12w


title: pituitary gland, HFD 0d, rep6

description: Library name: pit_0d_6


title: pituitary gland, HFD 4w, rep3

description: Library name: pit_4w_3


title: pituitary gland, HFD 0d, rep1

description: Library name: pit_0d_1


title: pancreas, HFD 12w, rep6

description: Library name: panc_12w_6


title: pancreas, HFD 12w, rep5

description: Library name: panc_12w_5


title: pituitary gland, HFD 1w, rep1

description: Library name: pit_1w_1


title: pancreas, HFD 12w, rep4

description: Library name: panc_12w_4


title: pancreas, HFD 12w, rep1

description: Library name: panc_12w_1


title: pancreas, HFD 10w, rep6

description: Library name: panc_10w_6

value: HFD 10w


title: pancreas, HFD 10w, rep4

description: Library name: panc_10w_4


title: pancreas, HFD 10w, rep1

description: Library name: panc_10w_1


title: pancreas, HFD 10w, rep3

description: Library name: panc_10w_3


title: pancreas, HFD 8w, rep2

description: Library name: panc_8w_2

value: HFD 8w


title: pancreas, HFD 8w, rep4

description: Library name: panc_8w_4


title: pancreas, HFD 10w, rep2

description: Library name: panc_10w_2


title: pancreas, HFD 7w, rep4

description: Library name: panc_7w_4


title: pancreas, HFD 8w, rep6

description: Library name: panc_8w_6


title: pituitary gland, HFD 1d, rep2

description: Library name: pit_1d_2

value: HFD 1d


title: pancreas, HFD 8w, rep5

description: Library name: panc_8w_5


title: pancreas, HFD 6w, rep5

description: Library name: panc_6w_5


title: pancreas, HFD 7w, rep1

description: Library name: panc_7w_1

value: HFD 7w


title: pancreas, HFD 10w, rep5

description: Library name: panc_10w_5


title: pancreas, HFD 8w, rep1

description: Library name: panc_8w_1


title: pancreas, HFD 7w, rep6

description: Library name: panc_7w_6


title: pancreas, HFD 7w, rep5

description: Library name: panc_7w_5


title: pancreas, HFD 6w, rep2

description: Library name: panc_6w_2

value: HFD 6w


title: pancreas, HFD 7w, rep2

description: Library name: panc_7w_2


title: pancreas, HFD 7w, rep3

description: Library name: panc_7w_3


title: pancreas, HFD 6w, rep6

description: Library name: panc_6w_6


title: pancreas, HFD 5w, rep4

description: Library name: panc_5w_4

value: HFD 5w


title: pancreas, HFD 5w, rep3

description: Library name: panc_5w_3


title: pancreas, HFD 6w, rep4

description: Library name: panc_6w_4


title: pancreas, HFD 5w, rep1

description: Library name: panc_5w_1


title: pancreas, HFD 4w, rep5

description: Library name: panc_4w_5

value: HFD 4w


title: pancreas, HFD 6w, rep1

description: Library name: panc_6w_1


title: pancreas, HFD 6w, rep3

description: Library name: panc_6w_3


title: pancreas, HFD 5w, rep6

description: Library name: panc_5w_6


title: pancreas, HFD 8w, rep3

description: Library name: panc_8w_3


title: pancreas, HFD 3w, rep5

description: Library name: panc_3w_5

value: HFD 3w


title: pancreas, HFD 3w, rep3

description: Library name: panc_3w_3


title: pancreas, HFD 3w, rep2

description: Library name: panc_3w_2


title: pancreas, HFD 3w, rep1

description: Library name: panc_3w_1


title: pancreas, HFD 4w, rep6

description: Library name: panc_4w_6


title: pancreas, HFD 4w, rep4

description: Library name: panc_4w_4


title: pancreas, HFD 5w, rep5

description: Library name: panc_5w_5


title: pancreas, HFD 4w, rep2

description: Library name: panc_4w_2


title: pancreas, HFD 4w, rep1

description: Library name: panc_4w_1


title: pancreas, HFD 4w, rep3

description: Library name: panc_4w_3


title: pancreas, HFD 3w, rep6

description: Library name: panc_3w_6


title: pancreas, HFD 3w, rep4

description: Library name: panc_3w_4


title: pancreas, HFD 10d, rep5

description: Library name: panc_10d_5


title: pancreas, HFD 10d, rep3

description: Library name: panc_10d_3


title: pancreas, HFD 12w, rep2

description: Library name: panc_12w_2


title: pancreas, HFD 1w, rep5

description: Library name: panc_1w_5


title: pancreas, HFD 2w, rep6

description: Library name: panc_2w_6

value: HFD 2w


title: pancreas, HFD 2w, rep4

description: Library name: panc_2w_4


title: pancreas, HFD 2w, rep3

description: Library name: panc_2w_3


title: pancreas, HFD 2w, rep1

description: Library name: panc_2w_1


title: pancreas, HFD 2w, rep2

description: Library name: panc_2w_2


title: pancreas, HFD 1w, rep1

description: Library name: panc_1w_1


title: pancreas, HFD 2w, rep5

description: Library name: panc_2w_5


title: pancreas, HFD 10d, rep4

description: Library name: panc_10d_4

value: HFD 10d


title: pancreas, HFD 3d, rep4

description: Library name: panc_3d_4


title: pancreas, HFD 1w, rep6

description: Library name: panc_1w_6

value: HFD 1w


title: pancreas, HFD 5w, rep2

description: Library name: panc_5w_2


title: pancreas, HFD 1w, rep4

description: Library name: panc_1w_4


title: pancreas, HFD 1d, rep6

description: Library name: panc_1d_6


title: pancreas, HFD 1w, rep3

description: Library name: panc_1w_3


title: pancreas, HFD 1d, rep2

description: Library name: panc_1d_2


title: pancreas, HFD 1w, rep2

description: Library name: panc_1w_2


title: pancreas, HFD 3d, rep6

description: Library name: panc_3d_6


title: pancreas, HFD 3d, rep3

description: Library name: panc_3d_3


title: pancreas, HFD 3d, rep5

description: Library name: panc_3d_5


title: pancreas, HFD 3d, rep2

description: Library name: panc_3d_2


title: pancreas, HFD 3d, rep1

description: Library name: panc_3d_1


title: pancreas, HFD 0d, rep6

description: Library name: panc_0d_6

value: HFD 0d


title: pancreas, HFD 10d, rep2

description: Library name: panc_10d_2

value: wild type


title: pancreas, HFD 10d, rep6

description: Library name: panc_10d_6

value: male


title: pancreas, HFD 1d, rep5

description: Library name: panc_1d_5


title: pancreas, HFD 0d, rep2

description: Library name: panc_0d_2


title: olfactory bulb, HFD 12w, rep6

description: Library name: olf_12w_6

source_name: olfactory bulb

value: olfactory bulb


title: pancreas, HFD 1d, rep4

description: Library name: panc_1d_4

value: pancreas


title: olfactory bulb, HFD 12w, rep2

description: Library name: olf_12w_2

value: HFD 12w


title: pancreas, HFD 10d, rep1

description: Library name: panc_10d_1


title: olfactory bulb, HFD 12w, rep1

description: Library name: olf_12w_1


title: pancreas, HFD 1d, rep3

description: Library name: panc_1d_3


title: pancreas, HFD 1d, rep1

description: Library name: panc_1d_1


title: olfactory bulb, HFD 10w, rep5

description: Library name: olf_10w_5

value: HFD 10w


title: pancreas, HFD 0d, rep3

description: Library name: panc_0d_3


title: olfactory bulb, HFD 12w, rep3

description: Library name: olf_12w_3


title: pancreas, HFD 0d, rep1

description: Library name: panc_0d_1


title: olfactory bulb, HFD 12w, rep4

description: Library name: olf_12w_4


title: olfactory bulb, HFD 10w, rep6

description: Library name: olf_10w_6


title: olfactory bulb, HFD 8w, rep5

description: Library name: olf_8w_5

value: HFD 8w


title: olfactory bulb, HFD 8w, rep2

description: Library name: olf_8w_2


title: olfactory bulb, HFD 8w, rep3

description: Library name: olf_8w_3


title: olfactory bulb, HFD 8w, rep4

description: Library name: olf_8w_4


title: olfactory bulb, HFD 12w, rep5

description: Library name: olf_12w_5


title: pituitary gland, HFD 0d, rep3

description: Library name: pit_0d_3

value: pituitary gland


title: olfactory bulb, HFD 10w, rep2

description: Library name: olf_10w_2


title: olfactory bulb, HFD 10w, rep3

description: Library name: olf_10w_3


title: olfactory bulb, HFD 10w, rep1

description: Library name: olf_10w_1


title: olfactory bulb, HFD 8w, rep6

description: Library name: olf_8w_6


title: pancreas, HFD 0d, rep5

description: Library name: panc_0d_5


title: olfactory bulb, HFD 7w, rep5

description: Library name: olf_7w_5

value: HFD 7w


title: olfactory bulb, HFD 7w, rep3

description: Library name: olf_7w_3


title: pancreas, HFD 0d, rep4

description: Library name: panc_0d_4


title: olfactory bulb, HFD 7w, rep6

description: Library name: olf_7w_6


title: olfactory bulb, HFD 7w, rep4

description: Library name: olf_7w_4


title: olfactory bulb, HFD 5w, rep6

description: Library name: olf_5w_6


title: olfactory bulb, HFD 7w, rep2

description: Library name: olf_7w_2


title: olfactory bulb, HFD 5w, rep5

description: Library name: olf_5w_5


title: olfactory bulb, HFD 7w, rep1

description: Library name: olf_7w_1


title: olfactory bulb, HFD 6w, rep6

description: Library name: olf_6w_6

value: HFD 6w


title: olfactory bulb, HFD 10w, rep4

description: Library name: olf_10w_4


title: olfactory bulb, HFD 6w, rep5

description: Library name: olf_6w_5


title: olfactory bulb, HFD 6w, rep4

description: Library name: olf_6w_4


title: olfactory bulb, HFD 4w, rep6

description: Library name: olf_4w_6


title: olfactory bulb, HFD 6w, rep2

description: Library name: olf_6w_2


title: olfactory bulb, HFD 4w, rep5

description: Library name: olf_4w_5


title: olfactory bulb, HFD 4w, rep3

description: Library name: olf_4w_3


title: olfactory bulb, HFD 6w, rep1

description: Library name: olf_6w_1


title: olfactory bulb, HFD 4w, rep1

description: Library name: olf_4w_1


title: olfactory bulb, HFD 3w, rep3

description: Library name: olf_3w_3


title: olfactory bulb, HFD 3w, rep2

description: Library name: olf_3w_2


title: olfactory bulb, HFD 2w, rep6

description: Library name: olf_2w_6


title: olfactory bulb, HFD 5w, rep4

description: Library name: olf_5w_4

value: HFD 5w


title: olfactory bulb, HFD 3w, rep1

description: Library name: olf_3w_1


title: olfactory bulb, HFD 5w, rep3

description: Library name: olf_5w_3


title: olfactory bulb, HFD 8w, rep1

description: Library name: olf_8w_1


title: olfactory bulb, HFD 5w, rep2

description: Library name: olf_5w_2


title: olfactory bulb, HFD 5w, rep1

description: Library name: olf_5w_1


title: olfactory bulb, HFD 4w, rep4

description: Library name: olf_4w_4

value: HFD 4w


title: olfactory bulb, HFD 2w, rep1

description: Library name: olf_2w_1


title: olfactory bulb, HFD 10d, rep4

description: Library name: olf_10d_4


title: olfactory bulb, HFD 4w, rep2

description: Library name: olf_4w_2


title: olfactory bulb, HFD 3w, rep5

description: Library name: olf_3w_5

value: HFD 3w


title: olfactory bulb, HFD 3w, rep6

description: Library name: olf_3w_6


title: olfactory bulb, HFD 1w, rep6

description: Library name: olf_1w_6


title: olfactory bulb, HFD 1w, rep4

description: Library name: olf_1w_4


title: olfactory bulb, HFD 1w, rep3

description: Library name: olf_1w_3


title: olfactory bulb, HFD 3w, rep4

description: Library name: olf_3w_4


title: olfactory bulb, HFD 2w, rep5

description: Library name: olf_2w_5

value: HFD 2w


title: olfactory bulb, HFD 6w, rep3

description: Library name: olf_6w_3


title: olfactory bulb, HFD 3d, rep3

description: Library name: olf_3d_3

value: HFD 3d


title: olfactory bulb, HFD 2w, rep4

description: Library name: olf_2w_4


title: olfactory bulb, HFD 2w, rep3

description: Library name: olf_2w_3


title: olfactory bulb, HFD 2w, rep2

description: Library name: olf_2w_2


title: olfactory bulb, HFD 10d, rep6

description: Library name: olf_10d_6

value: HFD 10d


title: olfactory bulb, HFD 10d, rep5

description: Library name: olf_10d_5


title: olfactory bulb, HFD 10d, rep3

description: Library name: olf_10d_3


title: olfactory bulb, HFD 10d, rep1

description: Library name: olf_10d_1


title: olfactory bulb, HFD 1d, rep2

description: Library name: olf_1d_2

value: HFD 1d


title: olfactory bulb, HFD 1d, rep4

description: Library name: olf_1d_4

value: wild type


title: olfactory bulb, HFD 1d, rep3

description: Library name: olf_1d_3

value: male


title: olfactory bulb, HFD 10d, rep2

description: Library name: olf_10d_2

value: olfactory bulb


title: olfactory bulb, HFD 0d, rep6

description: Library name: olf_0d_6

value: HFD 0d


title: olfactory bulb, HFD 0d, rep4

description: Library name: olf_0d_4


title: olfactory bulb, HFD 1w, rep5

description: Library name: olf_1w_5

value: HFD 1w


title: olfactory bulb, HFD 0d, rep1

description: Library name: olf_0d_1


title: olfactory bulb, HFD 1w, rep2

description: Library name: olf_1w_2


title: neocortex, HFD 12w, rep6

description: Library name: neo_12w_6

source_name: neocortex

value: neocortex

value: HFD 12w


title: olfactory bulb, HFD 1w, rep1

description: Library name: olf_1w_1


title: olfactory bulb, HFD 3d, rep6

description: Library name: olf_3d_6


title: neocortex, HFD 12w, rep4

description: Library name: neo_12w_4


title: neocortex, HFD 12w, rep3

description: Library name: neo_12w_3


title: neocortex, HFD 12w, rep1

description: Library name: neo_12w_1


title: neocortex, HFD 10w, rep6

description: Library name: neo_10w_6

value: HFD 10w


title: olfactory bulb, HFD 3d, rep5

description: Library name: olf_3d_5


title: neocortex, HFD 10w, rep5

description: Library name: neo_10w_5


title: neocortex, HFD 10w, rep3

description: Library name: neo_10w_3


title: neocortex, HFD 8w, rep4

description: Library name: neo_8w_4

value: HFD 8w


title: neocortex, HFD 8w, rep6

description: Library name: neo_8w_6


title: olfactory bulb, HFD 3d, rep1

description: Library name: olf_3d_1


title: neocortex, HFD 8w, rep3

description: Library name: neo_8w_3


title: olfactory bulb, HFD 3d, rep2

description: Library name: olf_3d_2


title: olfactory bulb, HFD 1d, rep6

description: Library name: olf_1d_6


title: olfactory bulb, HFD 1d, rep5

description: Library name: olf_1d_5


title: olfactory bulb, HFD 0d, rep3

description: Library name: olf_0d_3


title: olfactory bulb, HFD 0d, rep5

description: Library name: olf_0d_5


title: neocortex, HFD 7w, rep3

description: Library name: neo_7w_3

value: HFD 7w


title: olfactory bulb, HFD 1d, rep1

description: Library name: olf_1d_1


title: olfactory bulb, HFD 3d, rep4

description: Library name: olf_3d_4


title: olfactory bulb, HFD 0d, rep2

description: Library name: olf_0d_2


title: neocortex, HFD 12w, rep5

description: Library name: neo_12w_5


title: neocortex, HFD 12w, rep2

description: Library name: neo_12w_2


title: neocortex, HFD 6w, rep2

description: Library name: neo_6w_2

value: HFD 6w


title: neocortex, HFD 10w, rep4

description: Library name: neo_10w_4


title: neocortex, HFD 5w, rep6

description: Library name: neo_5w_6

value: HFD 5w


title: neocortex, HFD 10w, rep2

description: Library name: neo_10w_2


title: neocortex, HFD 8w, rep5

description: Library name: neo_8w_5


title: neocortex, HFD 8w, rep1

description: Library name: neo_8w_1


title: neocortex, HFD 7w, rep6

description: Library name: neo_7w_6


title: neocortex, HFD 7w, rep5

description: Library name: neo_7w_5


title: neocortex, HFD 5w, rep2

description: Library name: neo_5w_2


title: neocortex, HFD 7w, rep4

description: Library name: neo_7w_4


title: neocortex, HFD 7w, rep2

description: Library name: neo_7w_2


title: neocortex, HFD 4w, rep3

description: Library name: neo_4w_3

value: HFD 4w


title: neocortex, HFD 7w, rep1

description: Library name: neo_7w_1


title: neocortex, HFD 6w, rep6

description: Library name: neo_6w_6


title: neocortex, HFD 6w, rep5

description: Library name: neo_6w_5


title: neocortex, HFD 10w, rep1

description: Library name: neo_10w_1


title: neocortex, HFD 6w, rep4

description: Library name: neo_6w_4


title: neocortex, HFD 6w, rep3

description: Library name: neo_6w_3


title: neocortex, HFD 3w, rep6

description: Library name: neo_3w_6

value: HFD 3w


title: neocortex, HFD 6w, rep1

description: Library name: neo_6w_1


title: neocortex, HFD 3w, rep5

description: Library name: neo_3w_5


title: neocortex, HFD 8w, rep2

description: Library name: neo_8w_2


title: neocortex, HFD 2w, rep3

description: Library name: neo_2w_3

value: HFD 2w


title: neocortex, HFD 5w, rep4

description: Library name: neo_5w_4


title: neocortex, HFD 5w, rep5

description: Library name: neo_5w_5


title: neocortex, HFD 5w, rep3

description: Library name: neo_5w_3


title: neocortex, HFD 2w, rep1

description: Library name: neo_2w_1


title: neocortex, HFD 4w, rep6

description: Library name: neo_4w_6


title: neocortex, HFD 4w, rep4

description: Library name: neo_4w_4


title: neocortex, HFD 4w, rep2

description: Library name: neo_4w_2


title: neocortex, HFD 4w, rep1

description: Library name: neo_4w_1


title: neocortex, HFD 1w, rep1

description: Library name: neo_1w_1


title: neocortex, HFD 3d, rep5

description: Library name: neo_3d_5

value: HFD 3d


title: neocortex, HFD 3w, rep4

description: Library name: neo_3w_4


title: neocortex, HFD 3w, rep2

description: Library name: neo_3w_2


title: neocortex, HFD 3w, rep1

description: Library name: neo_3w_1


title: neocortex, HFD 2w, rep6

description: Library name: neo_2w_6


title: neocortex, HFD 3d, rep2

description: Library name: neo_3d_2


title: neocortex, HFD 2w, rep5

description: Library name: neo_2w_5


title: neocortex, HFD 5w, rep1

description: Library name: neo_5w_1


title: neocortex, HFD 1d, rep6

description: Library name: neo_1d_6

value: HFD 1d


title: neocortex, HFD 2w, rep2

description: Library name: neo_2w_2

value: wild type


title: neocortex, HFD 4w, rep5

description: Library name: neo_4w_5

value: male


title: neocortex, HFD 2w, rep4

description: Library name: neo_2w_4


title: neocortex, HFD 10d, rep6

description: Library name: neo_10d_6

value: HFD 10d


title: neocortex, HFD 10d, rep5

description: Library name: neo_10d_5


title: neocortex, HFD 10d, rep4

description: Library name: neo_10d_4


title: neocortex, HFD 1d, rep2

description: Library name: neo_1d_2


title: neocortex, HFD 1d, rep1

description: Library name: neo_1d_1


title: neocortex, HFD 10d, rep3

description: Library name: neo_10d_3


title: neocortex, HFD 10d, rep2

description: Library name: neo_10d_2


title: neocortex, HFD 10d, rep1

description: Library name: neo_10d_1


title: neocortex, HFD 3w, rep3

description: Library name: neo_3w_3


title: neocortex, HFD 0d, rep2

description: Library name: neo_0d_2

value: HFD 0d


title: neocortex, HFD 0d, rep3

description: Library name: neo_0d_3


title: neocortex, HFD 1w, rep4

description: Library name: neo_1w_4

value: HFD 1w


title: neocortex, HFD 1w, rep3

description: Library name: neo_1w_3

value: neocortex


title: neocortex, HFD 1w, rep6

description: Library name: neo_1w_6


title: liver, HFD 12w, rep5

description: Library name: liver_12w_5

source_name: liver

value: liver

value: HFD 12w


title: neocortex, HFD 1w, rep2

description: Library name: neo_1w_2


title: neocortex, HFD 3d, rep4

description: Library name: neo_3d_4


title: liver, HFD 12w, rep2

description: Library name: liver_12w_2


title: neocortex, HFD 3d, rep6

description: Library name: neo_3d_6


title: neocortex, HFD 0d, rep6

description: Library name: neo_0d_6


title: neocortex, HFD 3d, rep3

description: Library name: neo_3d_3


title: neocortex, HFD 1w, rep5

description: Library name: neo_1w_5


title: liver, HFD 12w, rep1

description: Library name: liver_12w_1


title: neocortex, HFD 3d, rep1

description: Library name: neo_3d_1


title: neocortex, HFD 1d, rep5

description: Library name: neo_1d_5


title: liver, HFD 8w, rep6

description: Library name: liver_8w_6

value: HFD 8w


title: liver, HFD 8w, rep1

description: Library name: liver_8w_1


title: neocortex, HFD 1d, rep4

description: Library name: neo_1d_4


title: liver, HFD 8w, rep4

description: Library name: liver_8w_4


title: neocortex, HFD 1d, rep3

description: Library name: neo_1d_3


title: liver, HFD 7w, rep6

description: Library name: liver_7w_6

value: HFD 7w


title: neocortex, HFD 0d, rep5

description: Library name: neo_0d_5


title: neocortex, HFD 0d, rep4

description: Library name: neo_0d_4


title: liver, HFD 7w, rep5

description: Library name: liver_7w_5


title: liver, HFD 7w, rep1

description: Library name: liver_7w_1


title: liver, HFD 7w, rep3

description: Library name: liver_7w_3


title: liver, HFD 12w, rep6

description: Library name: liver_12w_6


title: liver, HFD 10w, rep2

description: Library name: liver_10w_2

value: HFD 10w


title: liver, HFD 6w, rep3

description: Library name: liver_6w_3

value: HFD 6w


title: liver, HFD 6w, rep2

description: Library name: liver_6w_2


title: liver, HFD 10w, rep6

description: Library name: liver_10w_6


title: liver, HFD 6w, rep1

description: Library name: liver_6w_1


title: liver, HFD 5w, rep3

description: Library name: liver_5w_3

value: HFD 5w


title: liver, HFD 5w, rep4

description: Library name: liver_5w_4


title: liver, HFD 5w, rep5

description: Library name: liver_5w_5


title: liver, HFD 12w, rep4

description: Library name: liver_12w_4


title: liver, HFD 10w, rep4

description: Library name: liver_10w_4


title: liver, HFD 4w, rep6

description: Library name: liver_4w_6

value: HFD 4w


title: liver, HFD 12w, rep3

description: Library name: liver_12w_3


title: liver, HFD 4w, rep4

description: Library name: liver_4w_4


title: liver, HFD 4w, rep3

description: Library name: liver_4w_3


title: liver, HFD 10w, rep3

description: Library name: liver_10w_3


title: liver, HFD 10w, rep1

description: Library name: liver_10w_1


title: neocortex, HFD 0d, rep1

description: Library name: neo_0d_1


title: liver, HFD 4w, rep1

description: Library name: liver_4w_1


title: liver, HFD 8w, rep5

description: Library name: liver_8w_5


title: liver, HFD 3w, rep2

description: Library name: liver_3w_2

value: HFD 3w


title: liver, HFD 8w, rep2

description: Library name: liver_8w_2


title: liver, HFD 2w, rep3

description: Library name: liver_2w_3

value: HFD 2w


title: liver, HFD 7w, rep4

description: Library name: liver_7w_4


title: liver, HFD 10w, rep5

description: Library name: liver_10w_5


title: liver, HFD 7w, rep2

description: Library name: liver_7w_2


title: liver, HFD 2w, rep1

description: Library name: liver_2w_1


title: liver, HFD 6w, rep6

description: Library name: liver_6w_6


title: liver, HFD 6w, rep5

description: Library name: liver_6w_5


title: liver, HFD 10d, rep5

description: Library name: liver_10d_5


title: liver, HFD 10d, rep4

description: Library name: liver_10d_4


title: liver, HFD 6w, rep4

description: Library name: liver_6w_4


title: liver, HFD 8w, rep3

description: Library name: liver_8w_3


title: liver, HFD 5w, rep6

description: Library name: liver_5w_6


title: liver, HFD 4w, rep5

description: Library name: liver_4w_5


title: liver, HFD 5w, rep2

description: Library name: liver_5w_2


title: liver, HFD 1w, rep5

description: Library name: liver_1w_5


title: liver, HFD 1w, rep3

description: Library name: liver_1w_3


title: liver, HFD 1w, rep1

description: Library name: liver_1w_1


title: liver, HFD 3d, rep6

description: Library name: liver_3d_6

value: HFD 3d


title: liver, HFD 3d, rep5

description: Library name: liver_3d_5

value: wild type


title: liver, HFD 3w, rep5

description: Library name: liver_3w_5

value: male


title: liver, HFD 4w, rep2

description: Library name: liver_4w_2


title: liver, HFD 3d, rep3

description: Library name: liver_3d_3


title: liver, HFD 3w, rep6

description: Library name: liver_3w_6


title: liver, HFD 3w, rep1

description: Library name: liver_3w_1


title: liver, HFD 5w, rep1

description: Library name: liver_5w_1


title: liver, HFD 3w, rep4

description: Library name: liver_3w_4


title: liver, HFD 2w, rep6

description: Library name: liver_2w_6


title: liver, HFD 3w, rep3

description: Library name: liver_3w_3


title: liver, HFD 1w, rep6

description: Library name: liver_1w_6


title: liver, HFD 2w, rep5

description: Library name: liver_2w_5


title: liver, HFD 3d, rep2

description: Library name: liver_3d_2


title: liver, HFD 1d, rep4

description: Library name: liver_1d_4

value: HFD 1d


title: liver, HFD 3d, rep1

description: Library name: liver_3d_1


title: liver, HFD 2w, rep2

description: Library name: liver_2w_2


title: liver, HFD 10d, rep3

description: Library name: liver_10d_3

value: HFD 10d


title: liver, HFD 10d, rep2

description: Library name: liver_10d_2


title: liver, HFD 10d, rep6

description: Library name: liver_10d_6


title: liver, HFD 10d, rep1

description: Library name: liver_10d_1


title: liver, HFD 0d, rep5

description: Library name: liver_0d_5

value: HFD 0d


title: liver, HFD 0d, rep4

description: Library name: liver_0d_4


title: liver, HFD 1w, rep4

description: Library name: liver_1w_4

value: HFD 1w


title: liver, HFD 0d, rep3

description: Library name: liver_0d_3

value: liver


title: liver, HFD 0d, rep1

description: Library name: liver_0d_1


title: liver, HFD 2w, rep4

description: Library name: liver_2w_4


title: liver, HFD 1w, rep2

description: Library name: liver_1w_2


title: liver, HFD 1d, rep6

description: Library name: liver_1d_6


title: liver, HFD 1d, rep5

description: Library name: liver_1d_5


title: liver, HFD 3d, rep4

description: Library name: liver_3d_4


title: liver, HFD 1d, rep3

description: Library name: liver_1d_3


title: inguinal white adipose tissue, HFD 10w, rep3

description: Library name: iwat_10w_3

source_name: inguinal white adipose tissue

value: inguinal white adipose tissue


title: liver, HFD 1d, rep2

description: Library name: liver_1d_2


title: liver, HFD 0d, rep6

description: Library name: liver_0d_6


title: liver, HFD 0d, rep2

description: Library name: liver_0d_2


title: inguinal white adipose tissue, HFD 12w, rep6

description: Library name: iwat_12w_6

value: HFD 12w


title: inguinal white adipose tissue, HFD 8w, rep5

description: Library name: iwat_8w_5

value: HFD 8w


title: inguinal white adipose tissue, HFD 12w, rep5

description: Library name: iwat_12w_5


title: inguinal white adipose tissue, HFD 12w, rep4

description: Library name: iwat_12w_4


title: inguinal white adipose tissue, HFD 12w, rep3

description: Library name: iwat_12w_3


title: inguinal white adipose tissue, HFD 12w, rep1

description: Library name: iwat_12w_1


title: inguinal white adipose tissue, HFD 8w, rep1

description: Library name: iwat_8w_1


title: inguinal white adipose tissue, HFD 7w, rep3

description: Library name: iwat_7w_3

value: HFD 7w


title: inguinal white adipose tissue, HFD 8w, rep2

description: Library name: iwat_8w_2


title: inguinal white adipose tissue, HFD 12w, rep2

description: Library name: iwat_12w_2


title: inguinal white adipose tissue, HFD 10w, rep5

description: Library name: iwat_10w_5

value: HFD 10w


title: inguinal white adipose tissue, HFD 10w, rep6

description: Library name: iwat_10w_6


title: inguinal white adipose tissue, HFD 7w, rep2

description: Library name: iwat_7w_2


title: inguinal white adipose tissue, HFD 10w, rep2

description: Library name: iwat_10w_2


title: inguinal white adipose tissue, HFD 8w, rep6

description: Library name: iwat_8w_6


title: inguinal white adipose tissue, HFD 10w, rep1

description: Library name: iwat_10w_1


title: inguinal white adipose tissue, HFD 6w, rep4

description: Library name: iwat_6w_4

value: HFD 6w


title: inguinal white adipose tissue, HFD 8w, rep3

description: Library name: iwat_8w_3


title: inguinal white adipose tissue, HFD 6w, rep6

description: Library name: iwat_6w_6


title: inguinal white adipose tissue, HFD 7w, rep5

description: Library name: iwat_7w_5


title: inguinal white adipose tissue, HFD 6w, rep3

description: Library name: iwat_6w_3


title: inguinal white adipose tissue, HFD 8w, rep4

description: Library name: iwat_8w_4


title: inguinal white adipose tissue, HFD 5w, rep6

description: Library name: iwat_5w_6

value: HFD 5w


title: inguinal white adipose tissue, HFD 6w, rep2

description: Library name: iwat_6w_2


title: inguinal white adipose tissue, HFD 5w, rep5

description: Library name: iwat_5w_5


title: inguinal white adipose tissue, HFD 7w, rep4

description: Library name: iwat_7w_4


title: liver, HFD 1d, rep1

description: Library name: liver_1d_1


title: inguinal white adipose tissue, HFD 7w, rep6

description: Library name: iwat_7w_6


title: inguinal white adipose tissue, HFD 7w, rep1

description: Library name: iwat_7w_1


title: inguinal white adipose tissue, HFD 5w, rep4

description: Library name: iwat_5w_4


title: inguinal white adipose tissue, HFD 10w, rep4

description: Library name: iwat_10w_4


title: inguinal white adipose tissue, HFD 5w, rep3

description: Library name: iwat_5w_3


title: inguinal white adipose tissue, HFD 4w, rep5

description: Library name: iwat_4w_5

value: HFD 4w


title: inguinal white adipose tissue, HFD 4w, rep6

description: Library name: iwat_4w_6


title: inguinal white adipose tissue, HFD 4w, rep3

description: Library name: iwat_4w_3


title: inguinal white adipose tissue, HFD 5w, rep1

description: Library name: iwat_5w_1


title: inguinal white adipose tissue, HFD 5w, rep2

description: Library name: iwat_5w_2


title: inguinal white adipose tissue, HFD 6w, rep5

description: Library name: iwat_6w_5


title: inguinal white adipose tissue, HFD 4w, rep4

description: Library name: iwat_4w_4


title: inguinal white adipose tissue, HFD 6w, rep1

description: Library name: iwat_6w_1


title: inguinal white adipose tissue, HFD 3w, rep5

description: Library name: iwat_3w_5

value: HFD 3w


title: inguinal white adipose tissue, HFD 2w, rep6

description: Library name: iwat_2w_6

value: HFD 2w


title: inguinal white adipose tissue, HFD 3w, rep1

description: Library name: iwat_3w_1

value: wild type


title: inguinal white adipose tissue, HFD 4w, rep2

description: Library name: iwat_4w_2

value: male


title: inguinal white adipose tissue, HFD 3w, rep6

description: Library name: iwat_3w_6


title: inguinal white adipose tissue, HFD 2w, rep3

description: Library name: iwat_2w_3


title: inguinal white adipose tissue, HFD 10d, rep6

description: Library name: iwat_10d_6


title: inguinal white adipose tissue, HFD 2w, rep2

description: Library name: iwat_2w_2


title: inguinal white adipose tissue, HFD 3w, rep3

description: Library name: iwat_3w_3


title: inguinal white adipose tissue, HFD 3w, rep4

description: Library name: iwat_3w_4


title: inguinal white adipose tissue, HFD 3w, rep2

description: Library name: iwat_3w_2


title: inguinal white adipose tissue, HFD 10d, rep3

description: Library name: iwat_10d_3


title: inguinal white adipose tissue, HFD 10d, rep1

description: Library name: iwat_10d_1


title: inguinal white adipose tissue, HFD 4w, rep1

description: Library name: iwat_4w_1


title: inguinal white adipose tissue, HFD 1w, rep5

description: Library name: iwat_1w_5


title: inguinal white adipose tissue, HFD 2w, rep4

description: Library name: iwat_2w_4


title: inguinal white adipose tissue, HFD 2w, rep5

description: Library name: iwat_2w_5


title: inguinal white adipose tissue, HFD 3d, rep5

description: Library name: iwat_3d_5

value: HFD 3d


title: inguinal white adipose tissue, HFD 3d, rep3

description: Library name: iwat_3d_3


title: inguinal white adipose tissue, HFD 10d, rep5

description: Library name: iwat_10d_5

value: HFD 10d


title: inguinal white adipose tissue, HFD 2w, rep1

description: Library name: iwat_2w_1


title: inguinal white adipose tissue, HFD 10d, rep2

description: Library name: iwat_10d_2


title: inguinal white adipose tissue, HFD 3d, rep4

description: Library name: iwat_3d_4


title: inguinal white adipose tissue, HFD 3d, rep1

description: Library name: iwat_3d_1


title: inguinal white adipose tissue, HFD 1d, rep3

description: Library name: iwat_1d_3

value: HFD 1d


title: inguinal white adipose tissue, HFD 1w, rep6

description: Library name: iwat_1w_6

value: HFD 1w


title: inguinal white adipose tissue, HFD 1w, rep4

description: Library name: iwat_1w_4


title: inguinal white adipose tissue, HFD 1w, rep1

description: Library name: iwat_1w_1


title: inguinal white adipose tissue, HFD 1w, rep2

description: Library name: iwat_1w_2


title: inguinal white adipose tissue, HFD 0d, rep5

description: Library name: iwat_0d_5

value: HFD 0d


title: inguinal white adipose tissue, HFD 0d, rep4

description: Library name: iwat_0d_4

value: inguinal white adipose tissue


title: inguinal white adipose tissue, HFD 3d, rep6

description: Library name: iwat_3d_6


title: inguinal white adipose tissue, HFD 0d, rep2

description: Library name: iwat_0d_2


title: inguinal white adipose tissue, HFD 3d, rep2

description: Library name: iwat_3d_2


title: hypothalamus, HFD 12w, rep5

description: Library name: hypo_12w_5

source_name: hypothalamus

value: hypothalamus

value: HFD 12w


title: hypothalamus, HFD 12w, rep1

description: Library name: hypo_12w_1


title: inguinal white adipose tissue, HFD 10d, rep4

description: Library name: iwat_10d_4


title: hypothalamus, HFD 10w, rep6

description: Library name: hypo_10w_6


title: inguinal white adipose tissue, HFD 1d, rep2

description: Library name: iwat_1d_2


title: hypothalamus, HFD 10w, rep4

description: Library name: hypo_10w_4


title: inguinal white adipose tissue, HFD 1d, rep1

description: Library name: iwat_1d_1


title: hypothalamus, HFD 10w, rep1

description: Library name: hypo_10w_1


title: hypothalamus, HFD 8w, rep6

description: Library name: hypo_8w_6

value: HFD 8w


title: inguinal white adipose tissue, HFD 0d, rep6

description: Library name: iwat_0d_6


title: hypothalamus, HFD 8w, rep4

description: Library name: hypo_8w_4


title: inguinal white adipose tissue, HFD 1w, rep3

description: Library name: iwat_1w_3


title: hypothalamus, HFD 8w, rep3

description: Library name: hypo_8w_3


title: inguinal white adipose tissue, HFD 0d, rep3

description: Library name: iwat_0d_3


title: inguinal white adipose tissue, HFD 0d, rep1

description: Library name: iwat_0d_1


title: hypothalamus, HFD 12w, rep6

description: Library name: hypo_12w_6


title: hypothalamus, HFD 12w, rep3

description: Library name: hypo_12w_3


title: hypothalamus, HFD 12w, rep4

description: Library name: hypo_12w_4


title: inguinal white adipose tissue, HFD 1d, rep6

description: Library name: iwat_1d_6


title: inguinal white adipose tissue, HFD 1d, rep5

description: Library name: iwat_1d_5


title: hypothalamus, HFD 6w, rep6

description: Library name: hypo_6w_6


title: inguinal white adipose tissue, HFD 1d, rep4

description: Library name: iwat_1d_4


title: hypothalamus, HFD 12w, rep2

description: Library name: hypo_12w_2


title: hypothalamus, HFD 10w, rep5

description: Library name: hypo_10w_5

value: HFD 10w


title: hypothalamus, HFD 10w, rep2

description: Library name: hypo_10w_2


title: hypothalamus, HFD 10w, rep3

description: Library name: hypo_10w_3


title: hypothalamus, HFD 6w, rep3

description: Library name: hypo_6w_3

value: HFD 6w


title: hypothalamus, HFD 6w, rep4

description: Library name: hypo_6w_4


title: hypothalamus, HFD 6w, rep2

description: Library name: hypo_6w_2


title: hypothalamus, HFD 8w, rep5

description: Library name: hypo_8w_5


title: hypothalamus, HFD 5w, rep6

description: Library name: hypo_5w_6

value: HFD 5w


title: hypothalamus, HFD 5w, rep5

description: Library name: hypo_5w_5


title: hypothalamus, HFD 8w, rep2

description: Library name: hypo_8w_2


title: hypothalamus, HFD 5w, rep1

description: Library name: hypo_5w_1


title: hypothalamus, HFD 8w, rep1

description: Library name: hypo_8w_1


title: hypothalamus, HFD 5w, rep2

description: Library name: hypo_5w_2


title: hypothalamus, HFD 5w, rep3

description: Library name: hypo_5w_3


title: hypothalamus, HFD 7w, rep5

description: Library name: hypo_7w_5

value: HFD 7w


title: hypothalamus, HFD 7w, rep6

description: Library name: hypo_7w_6


title: hypothalamus, HFD 4w, rep5

description: Library name: hypo_4w_5

value: HFD 4w


title: hypothalamus, HFD 7w, rep4

description: Library name: hypo_7w_4


title: hypothalamus, HFD 7w, rep2

description: Library name: hypo_7w_2


title: hypothalamus, HFD 7w, rep1

description: Library name: hypo_7w_1


title: hypothalamus, HFD 3w, rep5

description: Library name: hypo_3w_5

value: HFD 3w


title: hypothalamus, HFD 4w, rep4

description: Library name: hypo_4w_4

value: wild type


title: hypothalamus, HFD 4w, rep6

description: Library name: hypo_4w_6

value: male


title: hypothalamus, HFD 3w, rep3

description: Library name: hypo_3w_3


title: hypothalamus, HFD 3w, rep4

description: Library name: hypo_3w_4


title: hypothalamus, HFD 2w, rep6

description: Library name: hypo_2w_6

value: HFD 2w


title: hypothalamus, HFD 2w, rep5

description: Library name: hypo_2w_5


title: hypothalamus, HFD 2w, rep3

description: Library name: hypo_2w_3


title: hypothalamus, HFD 7w, rep3

description: Library name: hypo_7w_3


title: hypothalamus, HFD 6w, rep1

description: Library name: hypo_6w_1


title: hypothalamus, HFD 2w, rep1

description: Library name: hypo_2w_1


title: hypothalamus, HFD 10d, rep1

description: Library name: hypo_10d_1

value: HFD 10d


title: hypothalamus, HFD 10d, rep4

description: Library name: hypo_10d_4


title: hypothalamus, HFD 4w, rep3

description: Library name: hypo_4w_3


title: hypothalamus, HFD 4w, rep2

description: Library name: hypo_4w_2


title: hypothalamus, HFD 4w, rep1

description: Library name: hypo_4w_1


title: hypothalamus, HFD 3w, rep6

description: Library name: hypo_3w_6


title: hypothalamus, HFD 6w, rep5

description: Library name: hypo_6w_5


title: hypothalamus, HFD 1w, rep4

description: Library name: hypo_1w_4


title: hypothalamus, HFD 1w, rep1

description: Library name: hypo_1w_1


title: hypothalamus, HFD 3d, rep6

description: Library name: hypo_3d_6

value: HFD 3d


title: hypothalamus, HFD 5w, rep4

description: Library name: hypo_5w_4


title: hypothalamus, HFD 3w, rep2

description: Library name: hypo_3w_2


title: hypothalamus, HFD 3d, rep5

description: Library name: hypo_3d_5


title: hypothalamus, HFD 1w, rep2

description: Library name: hypo_1w_2

value: HFD 1w


title: hypothalamus, HFD 3d, rep4

description: Library name: hypo_3d_4


title: hypothalamus, HFD 3w, rep1

description: Library name: hypo_3w_1


title: hypothalamus, HFD 2w, rep4

description: Library name: hypo_2w_4


title: hypothalamus, HFD 2w, rep2

description: Library name: hypo_2w_2


title: hypothalamus, HFD 1d, rep6

description: Library name: hypo_1d_6

value: HFD 1d


title: hypothalamus, HFD 10d, rep6

description: Library name: hypo_10d_6


title: hypothalamus, HFD 10d, rep2

description: Library name: hypo_10d_2


title: hypothalamus, HFD 10d, rep3

description: Library name: hypo_10d_3


title: hypothalamus, HFD 1w, rep5

description: Library name: hypo_1w_5


title: hypothalamus, HFD 1w, rep3

description: Library name: hypo_1w_3


title: hypothalamus, HFD 1d, rep1

description: Library name: hypo_1d_1


title: hypothalamus, HFD 10d, rep5

description: Library name: hypo_10d_5


title: hypothalamus, HFD 0d, rep6

description: Library name: hypo_0d_6

value: HFD 0d


title: hypothalamus, HFD 3d, rep3

description: Library name: hypo_3d_3

value: hypothalamus


title: hypothalamus, HFD 1w, rep6

description: Library name: hypo_1w_6


title: hypothalamus, HFD 3d, rep1

description: Library name: hypo_3d_1


title: hypothalamus, HFD 3d, rep2

description: Library name: hypo_3d_2


title: hypothalamus, HFD 1d, rep3

description: Library name: hypo_1d_3


title: hypothalamus, HFD 1d, rep2

description: Library name: hypo_1d_2


title: hypothalamus, HFD 0d, rep5

description: Library name: hypo_0d_5


title: hypothalamus, HFD 0d, rep3

description: Library name: hypo_0d_3


title: hippocampus, HFD 12w, rep4

description: Library name: hipp_12w_4

source_name: hippocampus

value: hippocampus

value: HFD 12w


title: hypothalamus, HFD 0d, rep1

description: Library name: hypo_0d_1


title: hippocampus, HFD 12w, rep5

description: Library name: hipp_12w_5


title: hippocampus, HFD 12w, rep6

description: Library name: hipp_12w_6


title: hypothalamus, HFD 1d, rep5

description: Library name: hypo_1d_5


title: hypothalamus, HFD 0d, rep4

description: Library name: hypo_0d_4


title: hippocampus, HFD 12w, rep2

description: Library name: hipp_12w_2


title: hypothalamus, HFD 0d, rep2

description: Library name: hypo_0d_2


title: hippocampus, HFD 12w, rep3

description: Library name: hipp_12w_3


title: hippocampus, HFD 10w, rep4

description: Library name: hipp_10w_4

value: HFD 10w


title: hippocampus, HFD 10w, rep3

description: Library name: hipp_10w_3


title: hippocampus, HFD 10w, rep5

description: Library name: hipp_10w_5


title: hippocampus, HFD 10w, rep1

description: Library name: hipp_10w_1


title: hippocampus, HFD 8w, rep3

description: Library name: hipp_8w_3

value: HFD 8w


title: hypothalamus, HFD 1d, rep4

description: Library name: hypo_1d_4


title: hippocampus, HFD 10w, rep2

description: Library name: hipp_10w_2


title: hippocampus, HFD 7w, rep5

description: Library name: hipp_7w_5


title: hippocampus, HFD 8w, rep6

description: Library name: hipp_8w_6


title: hippocampus, HFD 7w, rep4

description: Library name: hipp_7w_4


title: hippocampus, HFD 8w, rep1

description: Library name: hipp_8w_1


title: hippocampus, HFD 7w, rep6

description: Library name: hipp_7w_6


title: hippocampus, HFD 7w, rep3

description: Library name: hipp_7w_3


title: hippocampus, HFD 8w, rep2

description: Library name: hipp_8w_2


title: hippocampus, HFD 7w, rep2

description: Library name: hipp_7w_2


title: hippocampus, HFD 6w, rep6

description: Library name: hipp_6w_6

value: HFD 6w


title: hippocampus, HFD 6w, rep5

description: Library name: hipp_6w_5


title: hippocampus, HFD 12w, rep1

description: Library name: hipp_12w_1


title: hippocampus, HFD 10w, rep6

description: Library name: hipp_10w_6


title: hippocampus, HFD 6w, rep1

description: Library name: hipp_6w_1


title: hippocampus, HFD 7w, rep1

description: Library name: hipp_7w_1

value: HFD 7w


title: hippocampus, HFD 6w, rep3

description: Library name: hipp_6w_3


title: hippocampus, HFD 6w, rep2

description: Library name: hipp_6w_2


title: hippocampus, HFD 5w, rep6

description: Library name: hipp_5w_6

value: HFD 5w


title: hippocampus, HFD 5w, rep4

description: Library name: hipp_5w_4


title: hippocampus, HFD 8w, rep5

description: Library name: hipp_8w_5


title: hippocampus, HFD 8w, rep4

description: Library name: hipp_8w_4


title: hippocampus, HFD 5w, rep1

description: Library name: hipp_5w_1


title: hippocampus, HFD 4w, rep6

description: Library name: hipp_4w_6

value: HFD 4w


title: hippocampus, HFD 5w, rep3

description: Library name: hipp_5w_3

value: wild type


title: hippocampus, HFD 4w, rep5

description: Library name: hipp_4w_5

value: male


title: hippocampus, HFD 5w, rep2

description: Library name: hipp_5w_2


title: hippocampus, HFD 4w, rep4

description: Library name: hipp_4w_4


title: hippocampus, HFD 3w, rep6

description: Library name: hipp_3w_6

value: HFD 3w


title: hippocampus, HFD 3w, rep5

description: Library name: hipp_3w_5


title: hippocampus, HFD 4w, rep2

description: Library name: hipp_4w_2


title: hippocampus, HFD 4w, rep3

description: Library name: hipp_4w_3


title: hippocampus, HFD 3w, rep3

description: Library name: hipp_3w_3


title: hippocampus, HFD 3w, rep2

description: Library name: hipp_3w_2


title: hippocampus, HFD 4w, rep1

description: Library name: hipp_4w_1


title: hippocampus, HFD 3w, rep1

description: Library name: hipp_3w_1


title: hippocampus, HFD 3w, rep4

description: Library name: hipp_3w_4


title: hippocampus, HFD 2w, rep6

description: Library name: hipp_2w_6

value: HFD 2w


title: hippocampus, HFD 6w, rep4

description: Library name: hipp_6w_4


title: hippocampus, HFD 2w, rep4

description: Library name: hipp_2w_4


title: hippocampus, HFD 2w, rep3

description: Library name: hipp_2w_3


title: hippocampus, HFD 5w, rep5

description: Library name: hipp_5w_5


title: hippocampus, HFD 2w, rep2

description: Library name: hipp_2w_2


title: hippocampus, HFD 10d, rep3

description: Library name: hipp_10d_3

value: HFD 10d


title: hippocampus, HFD 10d, rep4

description: Library name: hipp_10d_4


title: hippocampus, HFD 10d, rep6

description: Library name: hipp_10d_6


title: hippocampus, HFD 10d, rep5

description: Library name: hipp_10d_5


title: hippocampus, HFD 2w, rep1

description: Library name: hipp_2w_1


title: hippocampus, HFD 10d, rep1

description: Library name: hipp_10d_1


title: hippocampus, HFD 1w, rep6

description: Library name: hipp_1w_6

value: HFD 1w


title: hippocampus, HFD 1w, rep4

description: Library name: hipp_1w_4


title: hippocampus, HFD 10d, rep2

description: Library name: hipp_10d_2


title: hippocampus, HFD 1w, rep3

description: Library name: hipp_1w_3


title: hippocampus, HFD 1w, rep5

description: Library name: hipp_1w_5


title: hippocampus, HFD 1w, rep2

description: Library name: hipp_1w_2


title: hippocampus, HFD 1w, rep1

description: Library name: hipp_1w_1


title: hippocampus, HFD 3d, rep6

description: Library name: hipp_3d_6

value: HFD 3d


title: hippocampus, HFD 3d, rep1

description: Library name: hipp_3d_1


title: hippocampus, HFD 3d, rep5

description: Library name: hipp_3d_5


title: hippocampus, HFD 1d, rep4

description: Library name: hipp_1d_4

value: HFD 1d


title: hippocampus, HFD 1d, rep5

description: Library name: hipp_1d_5


title: hippocampus, HFD 3d, rep4

description: Library name: hipp_3d_4


title: hippocampus, HFD 3d, rep3

description: Library name: hipp_3d_3


title: hippocampus, HFD 1d, rep3

description: Library name: hipp_1d_3


title: hippocampus, HFD 2w, rep5

description: Library name: hipp_2w_5


title: hippocampus, HFD 3d, rep2

description: Library name: hipp_3d_2


title: hippocampus, HFD 1d, rep1

description: Library name: hipp_1d_1


title: hippocampus, HFD 0d, rep6

description: Library name: hipp_0d_6

value: HFD 0d


title: hippocampus, HFD 1d, rep2

description: Library name: hipp_1d_2

value: hippocampus


title: hippocampus, HFD 0d, rep4

description: Library name: hipp_0d_4


title: hippocampus, HFD 0d, rep3

description: Library name: hipp_0d_3


title: small intestine, HFD 12w, rep5

description: Library name: gut_12w_5

source_name: small intestine

value: small intestine

value: HFD 12w


title: hippocampus, HFD 0d, rep1

description: Library name: hipp_0d_1


title: small intestine, HFD 12w, rep4

description: Library name: gut_12w_4


title: hippocampus, HFD 0d, rep5

description: Library name: hipp_0d_5


title: hippocampus, HFD 0d, rep2

description: Library name: hipp_0d_2


title: small intestine, HFD 12w, rep3

description: Library name: gut_12w_3


title: small intestine, HFD 10w, rep6

description: Library name: gut_10w_6

value: HFD 10w


title: small intestine, HFD 10w, rep5

description: Library name: gut_10w_5


title: small intestine, HFD 10w, rep4

description: Library name: gut_10w_4


title: small intestine, HFD 12w, rep2

description: Library name: gut_12w_2


title: hippocampus, HFD 1d, rep6

description: Library name: hipp_1d_6


title: small intestine, HFD 10w, rep3

description: Library name: gut_10w_3


title: small intestine, HFD 10w, rep2

description: Library name: gut_10w_2


title: small intestine, HFD 8w, rep5

description: Library name: gut_8w_5

value: HFD 8w


title: small intestine, HFD 10w, rep1

description: Library name: gut_10w_1


title: small intestine, HFD 8w, rep4

description: Library name: gut_8w_4


title: small intestine, HFD 8w, rep2

description: Library name: gut_8w_2


title: small intestine, HFD 8w, rep3

description: Library name: gut_8w_3


title: small intestine, HFD 8w, rep1

description: Library name: gut_8w_1


title: small intestine, HFD 7w, rep6

description: Library name: gut_7w_6

value: HFD 7w


title: small intestine, HFD 7w, rep5

description: Library name: gut_7w_5


title: small intestine, HFD 7w, rep2

description: Library name: gut_7w_2


title: small intestine, HFD 7w, rep4

description: Library name: gut_7w_4


title: small intestine, HFD 7w, rep3

description: Library name: gut_7w_3


title: small intestine, HFD 7w, rep1

description: Library name: gut_7w_1


title: small intestine, HFD 12w, rep6

description: Library name: gut_12w_6


title: small intestine, HFD 6w, rep5

description: Library name: gut_6w_5

value: HFD 6w


title: small intestine, HFD 6w, rep6

description: Library name: gut_6w_6


title: small intestine, HFD 12w, rep1

description: Library name: gut_12w_1


title: small intestine, HFD 6w, rep4

description: Library name: gut_6w_4


title: small intestine, HFD 6w, rep3

description: Library name: gut_6w_3


title: small intestine, HFD 6w, rep1

description: Library name: gut_6w_1


title: small intestine, HFD 6w, rep2

description: Library name: gut_6w_2


title: small intestine, HFD 5w, rep6

description: Library name: gut_5w_6

value: HFD 5w


title: small intestine, HFD 5w, rep4

description: Library name: gut_5w_4

value: wild type


title: small intestine, HFD 5w, rep5

description: Library name: gut_5w_5

value: male


title: small intestine, HFD 5w, rep3

description: Library name: gut_5w_3


title: small intestine, HFD 4w, rep5

description: Library name: gut_4w_5

value: HFD 4w


title: small intestine, HFD 8w, rep6

description: Library name: gut_8w_6


title: small intestine, HFD 5w, rep2

description: Library name: gut_5w_2


title: small intestine, HFD 4w, rep4

description: Library name: gut_4w_4


title: small intestine, HFD 4w, rep6

description: Library name: gut_4w_6


title: small intestine, HFD 5w, rep1

description: Library name: gut_5w_1


title: small intestine, HFD 4w, rep2

description: Library name: gut_4w_2


title: small intestine, HFD 4w, rep3

description: Library name: gut_4w_3


title: small intestine, HFD 3w, rep5

description: Library name: gut_3w_5

value: HFD 3w


title: small intestine, HFD 4w, rep1

description: Library name: gut_4w_1


title: small intestine, HFD 3w, rep6

description: Library name: gut_3w_6


title: small intestine, HFD 3w, rep2

description: Library name: gut_3w_2


title: small intestine, HFD 2w, rep4

description: Library name: gut_2w_4

value: HFD 2w


title: small intestine, HFD 2w, rep5

description: Library name: gut_2w_5


title: small intestine, HFD 2w, rep6

description: Library name: gut_2w_6


title: small intestine, HFD 2w, rep3

description: Library name: gut_2w_3


title: small intestine, HFD 2w, rep1

description: Library name: gut_2w_1


title: small intestine, HFD 2w, rep2

description: Library name: gut_2w_2


title: small intestine, HFD 10d, rep6

description: Library name: gut_10d_6

value: HFD 10d


title: small intestine, HFD 10d, rep1

description: Library name: gut_10d_1


title: small intestine, HFD 10d, rep5

description: Library name: gut_10d_5


title: small intestine, HFD 10d, rep2

description: Library name: gut_10d_2


title: small intestine, HFD 10d, rep3

description: Library name: gut_10d_3


title: small intestine, HFD 1w, rep6

description: Library name: gut_1w_6

value: HFD 1w


title: small intestine, HFD 1w, rep4

description: Library name: gut_1w_4


title: small intestine, HFD 10d, rep4

description: Library name: gut_10d_4


title: small intestine, HFD 1w, rep5

description: Library name: gut_1w_5


title: small intestine, HFD 1w, rep2

description: Library name: gut_1w_2


title: small intestine, HFD 3d, rep5

description: Library name: gut_3d_5

value: HFD 3d


title: small intestine, HFD 3d, rep4

description: Library name: gut_3d_4


title: small intestine, HFD 1w, rep3

description: Library name: gut_1w_3


title: small intestine, HFD 3w, rep4

description: Library name: gut_3w_4


title: small intestine, HFD 3d, rep2

description: Library name: gut_3d_2


title: small intestine, HFD 1w, rep1

description: Library name: gut_1w_1


title: small intestine, HFD 3d, rep6

description: Library name: gut_3d_6


title: small intestine, HFD 3w, rep3

description: Library name: gut_3w_3


title: small intestine, HFD 3d, rep3

description: Library name: gut_3d_3


title: small intestine, HFD 1d, rep5

description: Library name: gut_1d_5

value: HFD 1d


title: small intestine, HFD 3w, rep1

description: Library name: gut_3w_1


title: small intestine, HFD 1d, rep4

description: Library name: gut_1d_4


title: small intestine, HFD 1d, rep6

description: Library name: gut_1d_6


title: small intestine, HFD 1d, rep3

description: Library name: gut_1d_3


title: small intestine, HFD 1d, rep2

description: Library name: gut_1d_2


title: small intestine, HFD 1d, rep1

description: Library name: gut_1d_1


title: small intestine, HFD 0d, rep5

description: Library name: gut_0d_5

value: HFD 0d


title: small intestine, HFD 0d, rep6

description: Library name: gut_0d_6

value: small intestine


title: small intestine, HFD 0d, rep4

description: Library name: gut_0d_4


title: small intestine, HFD 0d, rep2

description: Library name: gut_0d_2


title: small intestine, HFD 0d, rep3

description: Library name: gut_0d_3


title: gastrocnemius muscle, HFD 12w, rep5

description: Library name: gas_12w_5

source_name: gastrocnemius muscle

value: gastrocnemius muscle

value: HFD 12w


title: gastrocnemius muscle, HFD 12w, rep4

description: Library name: gas_12w_4


title: gastrocnemius muscle, HFD 12w, rep3

description: Library name: gas_12w_3


title: small intestine, HFD 3d, rep1

description: Library name: gut_3d_1


title: gastrocnemius muscle, HFD 10w, rep5

description: Library name: gas_10w_5

value: HFD 10w


title: gastrocnemius muscle, HFD 10w, rep4

description: Library name: gas_10w_4


title: gastrocnemius muscle, HFD 12w, rep1

description: Library name: gas_12w_1


title: gastrocnemius muscle, HFD 10w, rep6

description: Library name: gas_10w_6


title: gastrocnemius muscle, HFD 10w, rep3

description: Library name: gas_10w_3


title: gastrocnemius muscle, HFD 12w, rep2

description: Library name: gas_12w_2


title: gastrocnemius muscle, HFD 12w, rep6

description: Library name: gas_12w_6


title: gastrocnemius muscle, HFD 8w, rep4

description: Library name: gas_8w_4

value: HFD 8w


title: gastrocnemius muscle, HFD 10w, rep2

description: Library name: gas_10w_2


title: gastrocnemius muscle, HFD 8w, rep3

description: Library name: gas_8w_3


title: gastrocnemius muscle, HFD 7w, rep6

description: Library name: gas_7w_6

value: HFD 7w


title: gastrocnemius muscle, HFD 8w, rep2

description: Library name: gas_8w_2


title: gastrocnemius muscle, HFD 8w, rep1

description: Library name: gas_8w_1


title: gastrocnemius muscle, HFD 7w, rep5

description: Library name: gas_7w_5


title: gastrocnemius muscle, HFD 7w, rep4

description: Library name: gas_7w_4


title: gastrocnemius muscle, HFD 7w, rep3

description: Library name: gas_7w_3


title: gastrocnemius muscle, HFD 7w, rep2

description: Library name: gas_7w_2


title: gastrocnemius muscle, HFD 7w, rep1

description: Library name: gas_7w_1


title: small intestine, HFD 0d, rep1

description: Library name: gut_0d_1


title: gastrocnemius muscle, HFD 6w, rep6

description: Library name: gas_6w_6

value: HFD 6w


title: gastrocnemius muscle, HFD 6w, rep5

description: Library name: gas_6w_5

value: wild type


title: gastrocnemius muscle, HFD 6w, rep4

description: Library name: gas_6w_4

value: male


title: gastrocnemius muscle, HFD 6w, rep3

description: Library name: gas_6w_3


title: gastrocnemius muscle, HFD 5w, rep6

description: Library name: gas_5w_6

value: HFD 5w


title: gastrocnemius muscle, HFD 6w, rep1

description: Library name: gas_6w_1


title: gastrocnemius muscle, HFD 8w, rep6

description: Library name: gas_8w_6


title: gastrocnemius muscle, HFD 5w, rep5

description: Library name: gas_5w_5


title: gastrocnemius muscle, HFD 8w, rep5

description: Library name: gas_8w_5


title: gastrocnemius muscle, HFD 5w, rep2

description: Library name: gas_5w_2


title: gastrocnemius muscle, HFD 5w, rep4

description: Library name: gas_5w_4


title: gastrocnemius muscle, HFD 5w, rep3

description: Library name: gas_5w_3


title: gastrocnemius muscle, HFD 5w, rep1

description: Library name: gas_5w_1


title: gastrocnemius muscle, HFD 4w, rep6

description: Library name: gas_4w_6

value: HFD 4w


title: gastrocnemius muscle, HFD 4w, rep4

description: Library name: gas_4w_4


title: gastrocnemius muscle, HFD 4w, rep3

description: Library name: gas_4w_3


title: gastrocnemius muscle, HFD 4w, rep5

description: Library name: gas_4w_5


title: gastrocnemius muscle, HFD 6w, rep2

description: Library name: gas_6w_2


title: gastrocnemius muscle, HFD 4w, rep2

description: Library name: gas_4w_2


title: gastrocnemius muscle, HFD 3w, rep6

description: Library name: gas_3w_6

value: HFD 3w


title: gastrocnemius muscle, HFD 3w, rep3

description: Library name: gas_3w_3


title: gastrocnemius muscle, HFD 3w, rep4

description: Library name: gas_3w_4


title: gastrocnemius muscle, HFD 3w, rep2

description: Library name: gas_3w_2


title: gastrocnemius muscle, HFD 2w, rep6

description: Library name: gas_2w_6

value: HFD 2w


title: gastrocnemius muscle, HFD 3w, rep1

description: Library name: gas_3w_1


title: gastrocnemius muscle, HFD 2w, rep4

description: Library name: gas_2w_4


title: gastrocnemius muscle, HFD 2w, rep3

description: Library name: gas_2w_3


title: gastrocnemius muscle, HFD 2w, rep5

description: Library name: gas_2w_5


title: gastrocnemius muscle, HFD 2w, rep1

description: Library name: gas_2w_1


title: gastrocnemius muscle, HFD 10d, rep6

description: Library name: gas_10d_6

value: HFD 10d


title: gastrocnemius muscle, HFD 2w, rep2

description: Library name: gas_2w_2


title: gastrocnemius muscle, HFD 10d, rep3

description: Library name: gas_10d_3


title: gastrocnemius muscle, HFD 10d, rep1

description: Library name: gas_10d_1


title: gastrocnemius muscle, HFD 1w, rep3

description: Library name: gas_1w_3

value: HFD 1w


title: gastrocnemius muscle, HFD 10d, rep2

description: Library name: gas_10d_2


title: gastrocnemius muscle, HFD 1w, rep2

description: Library name: gas_1w_2


title: gastrocnemius muscle, HFD 4w, rep1

description: Library name: gas_4w_1


title: gastrocnemius muscle, HFD 1w, rep1

description: Library name: gas_1w_1


title: gastrocnemius muscle, HFD 1w, rep6

description: Library name: gas_1w_6


title: gastrocnemius muscle, HFD 3w, rep5

description: Library name: gas_3w_5


title: gastrocnemius muscle, HFD 1w, rep5

description: Library name: gas_1w_5


title: gastrocnemius muscle, HFD 3d, rep4

description: Library name: gas_3d_4

value: HFD 3d


title: gastrocnemius muscle, HFD 3d, rep5

description: Library name: gas_3d_5


title: gastrocnemius muscle, HFD 3d, rep6

description: Library name: gas_3d_6


title: gastrocnemius muscle, HFD 1w, rep4

description: Library name: gas_1w_4


title: gastrocnemius muscle, HFD 3d, rep3

description: Library name: gas_3d_3


title: gastrocnemius muscle, HFD 3d, rep2

description: Library name: gas_3d_2


title: gastrocnemius muscle, HFD 10w, rep1

description: Library name: gas_10w_1


title: gastrocnemius muscle, HFD 1d, rep6

description: Library name: gas_1d_6

value: HFD 1d


title: gastrocnemius muscle, HFD 1d, rep3

description: Library name: gas_1d_3


title: gastrocnemius muscle, HFD 0d, rep5

description: Library name: gas_0d_5

value: HFD 0d


title: gastrocnemius muscle, HFD 10d, rep4

description: Library name: gas_10d_4

value: gastrocnemius muscle


title: gastrocnemius muscle, HFD 0d, rep4

description: Library name: gas_0d_4


title: gastrocnemius muscle, HFD 10d, rep5

description: Library name: gas_10d_5


title: gastrocnemius muscle, HFD 1d, rep4

description: Library name: gas_1d_4


title: gastrocnemius muscle, HFD 1d, rep2

description: Library name: gas_1d_2


title: gastrocnemius muscle, HFD 1d, rep1

description: Library name: gas_1d_1


title: gastrocnemius muscle, HFD 0d, rep6

description: Library name: gas_0d_6


title: gastrocnemius muscle, HFD 0d, rep3

description: Library name: gas_0d_3


title: gastrocnemius muscle, HFD 3d, rep1

description: Library name: gas_3d_1


title: gastrocnemius muscle, HFD 1d, rep5

description: Library name: gas_1d_5


title: gastrocnemius muscle, HFD 0d, rep2

description: Library name: gas_0d_2


title: gastrocnemius muscle, HFD 0d, rep1

description: Library name: gas_0d_1


title: epididymal white adipose tissue, HFD 20w, rep5

description: Library name: ewat_20w_5

source_name: epididymal white adipose tissue

value: epididymal white adipose tissue

value: HFD 20w


title: epididymal white adipose tissue, HFD 20w, rep4

description: Library name: ewat_20w_4


title: epididymal white adipose tissue, HFD 20w, rep6

description: Library name: ewat_20w_6


title: epididymal white adipose tissue, HFD 20w, rep3

description: Library name: ewat_20w_3


title: epididymal white adipose tissue, HFD 20w, rep2

description: Library name: ewat_20w_2


title: epididymal white adipose tissue, HFD 20w, rep1

description: Library name: ewat_20w_1


title: epididymal white adipose tissue, HFD 16w, rep4

description: Library name: ewat_16w_4

value: HFD 16w


title: epididymal white adipose tissue, HFD 16w, rep6

description: Library name: ewat_16w_6


title: epididymal white adipose tissue, HFD 16w, rep5

description: Library name: ewat_16w_5


title: epididymal white adipose tissue, HFD 16w, rep3

description: Library name: ewat_16w_3


title: epididymal white adipose tissue, HFD 16w, rep2

description: Library name: ewat_16w_2


title: epididymal white adipose tissue, HFD 12w, rep6

description: Library name: ewat_12w_6

value: HFD 12w


title: epididymal white adipose tissue, HFD 12w, rep5

description: Library name: ewat_12w_5


title: epididymal white adipose tissue, HFD 12w, rep3

description: Library name: ewat_12w_3


title: epididymal white adipose tissue, HFD 12w, rep4

description: Library name: ewat_12w_4


title: epididymal white adipose tissue, HFD 12w, rep2

description: Library name: ewat_12w_2


title: epididymal white adipose tissue, HFD 10w, rep5

description: Library name: ewat_10w_5

value: HFD 10w


title: epididymal white adipose tissue, HFD 16w, rep1

description: Library name: ewat_16w_1

value: wild type


title: epididymal white adipose tissue, HFD 10w, rep3

description: Library name: ewat_10w_3

value: male


title: epididymal white adipose tissue, HFD 10w, rep6

description: Library name: ewat_10w_6


title: epididymal white adipose tissue, HFD 10w, rep4

description: Library name: ewat_10w_4


title: epididymal white adipose tissue, HFD 8w, rep1

description: Library name: ewat_8w_1

value: HFD 8w


title: epididymal white adipose tissue, HFD 10w, rep2

description: Library name: ewat_10w_2


title: epididymal white adipose tissue, HFD 10w, rep1

description: Library name: ewat_10w_1


title: epididymal white adipose tissue, HFD 8w, rep5

description: Library name: ewat_8w_5


title: epididymal white adipose tissue, HFD 8w, rep4

description: Library name: ewat_8w_4


title: epididymal white adipose tissue, HFD 8w, rep3

description: Library name: ewat_8w_3


title: epididymal white adipose tissue, HFD 7w, rep4

description: Library name: ewat_7w_4

value: HFD 7w


title: epididymal white adipose tissue, HFD 8w, rep6

description: Library name: ewat_8w_6


title: epididymal white adipose tissue, HFD 7w, rep6

description: Library name: ewat_7w_6


title: epididymal white adipose tissue, HFD 7w, rep2

description: Library name: ewat_7w_2


title: epididymal white adipose tissue, HFD 8w, rep2

description: Library name: ewat_8w_2


title: epididymal white adipose tissue, HFD 6w, rep5

description: Library name: ewat_6w_5

value: HFD 6w


title: epididymal white adipose tissue, HFD 6w, rep4

description: Library name: ewat_6w_4


title: epididymal white adipose tissue, HFD 7w, rep3

description: Library name: ewat_7w_3


title: epididymal white adipose tissue, HFD 6w, rep6

description: Library name: ewat_6w_6


title: epididymal white adipose tissue, HFD 12w, rep1

description: Library name: ewat_12w_1


title: epididymal white adipose tissue, HFD 7w, rep1

description: Library name: ewat_7w_1


title: epididymal white adipose tissue, HFD 6w, rep2

description: Library name: ewat_6w_2


title: epididymal white adipose tissue, HFD 6w, rep1

description: Library name: ewat_6w_1


title: epididymal white adipose tissue, HFD 5w, rep6

description: Library name: ewat_5w_6

value: HFD 5w


title: shGREM1-2

city: Beijing

first: hanyuchen

last: han

address: 27 Taiping Rd

country: China

institute: Beijing Institute of biotechnology

data_processing:
Quality control: Raw data (raw reads) of fastq format were firstly processed through in-house perl scripts. In this step, clean data (clean reads) were obtained by removing reads containing adapter, reads containing ploy-N and low quality reads from raw data. At the same time, Q20, Q30 and GC content the clean data were calculated. All the downstream analyses were based on the clean data with high quality.
Reads mapping to the reference genome: Reference genome and gene model annotation files were downloaded from genome website directly. Index of the reference genome was built using Hisat2 v2.0.5 and paired-end clean reads were aligned to the reference genome using Hisat2 v2.0.5. We selected Hisat2 as the mapping tool for that Hisat2 can generate a database of splice junctions based on the gene model annotation file and thus a better mapping result than other non-splice mapping tools.
Novel transcripts prediction: The mapped reads of each sample were assembled by StringTie (v1.3.3b) (Mihaela Pertea.et al. 2015) in a reference-based approach. StringTie uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate fulllength transcripts representing multiple splice variants for each gene locus.
Quantification of gene expression level feature: Counts v1.5.0-p3 was used to count the reads numbers mapped to each gene. And then FPKM of each gene was calculated based on the length of the gene and reads count mapped to this gene. FPKM, expected number of Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced, considers the effect of sequencing depth and gene length for the reads count at the same time, and is currently the most commonly used method for estimating gene expression levels.
Differential expression analysis: (For DESeq2 with biological replicates) Differential expression analysis of two conditions/groups (two biological replicates per condition) was performed using the DESeq2R package (1.20.0). DESeq2 provide statistical routinesfor determining differential expression in digital gene expression data using a model based on the negative binomial distribution. The resulting P-values were adjusted using the Benjamini and Hochberg’s approach for controlling the false discovery rate . Genes with an adjusted P-value <0.05 found by DESeq2 were assigned as differentially expressed.
Assembly: mm10
Supplementary files format and content: tab-delimited text fles include RPKM values for each Sample

organism: Homo sapiens

source_name: bone

extract_protocol:
RNA was harvested using Rneasy mini plus kit (Qiagen). 1.3 ug of total RNA was used for the construction of sequencing libraries
RNA libraries for RNA-seq were prepared using SMARTER mRNA-Seq Library Prep Kit following manufacturer's protocols

value: bone

tag: cell line

tag: cell type

value: osteosarcoma cells


title: epididymal white adipose tissue, HFD 5w, rep5

description: Library name: ewat_5w_5


title: shControl-2


title: epididymal white adipose tissue, HFD 5w, rep4

description: Library name: ewat_5w_4


title: shControl-1


title: epididymal white adipose tissue, HFD 7w, rep5

description: Library name: ewat_7w_5


title: epididymal white adipose tissue, HFD 5w, rep3

description: Library name: ewat_5w_3


title: epididymal white adipose tissue, HFD 5w, rep1

description: Library name: ewat_5w_1


title: epididymal white adipose tissue, HFD 5w, rep2

description: Library name: ewat_5w_2


title: Astrocytes_healthy_20196910

type: genomic

city: Maastricht

first: Ehsan

last: Pishva

state: Limburg

address: Universiteitssingel 40

department: Psychiatry and Neuropsychology

country: Netherlands

institute: Maastricht University

hyb_protocol: Illumina Infinium protocol

scan_protocol: Illumina Infinium protocol scanned using Illumina HIScan System

data_processing: wateRmelon package (v2.10.0) in R environment (v4.4.1)

label: Cy3 and Cy5

molecule: genomic DNA

source_name: Brain (Cingulate Gyrus)

label_protocol: Illumina Infinium protocol

extract_protocol: Phenol-chloroform DNA extraction

value: Male

value: Brain (Cingulate Gyrus)

value: Astrocytes


title: Outer Bowel Wall

city: Stanford

first: Benjamin

last: Pham

state: CA

address: 257 Campus Drive

country: USA

institute: Stanford University

data_processing:
The libraries were sequenced using NextSeq (Illumina) and Bcl files were demultiplexed. Raw FASTQ files and histology images were processed by sample with the Space Ranger software, which uses STAR v2.5.1b for genome alignment against the Cell Ranger mm10 reference genome.
Assembly: mm10
Supplementary files format and content: barcode.tsv.gz: list of spatial barcodes
Supplementary files format and content: features.tsv.gz: list of gene IDs
Supplementary files format and content: matrix.mtx.mz: gene expression count data in Matrix Market Exchange Format
Supplementary files format and content: scalefactors_json.json: scale factors in json format
Supplementary files format and content: tissue_hires_image.png.gz: hi-res image of tissue
Supplementary files format and content: tissue_position_list.csv.gz: list of spatial barcodes and the coordinates specifying spots

source_name: Intestinal Stricture

extract_protocol:
To accommodate the size constraints of the Visium chip, we harvested a 1cm-thick wedge from an intestinal stricture and divided it into two sections: 1) mucosa through the muscularis propria (Inner Bowel Wall), and 2) the muscularis propria and surrounding fat (outer bowel). The sample was placed in a 1cm x 1cm block (TissueTek) with pre-chilled OCT and processed according to the Visual Spatial Protocol-Tissue Preparation Guide by 10X Genomics. Briefly, we flash froze tissue samples in OCT using a Thermo Scientific Thermo-Flask benchtop container filled with liquid nitrogen and a small, round, metal bowel with 1-inch height worth of 2-methylbutane. A pair of needle-drivers was used to maneuver the 2-methylbutane bowl in and out of the Thermo-Flask. The OCT block was placed in the 2-methylbutane bowl and lowered into the liquid nitrogen until the tissue was completely frozen. The tissue was then placed on dry ice and transferred to a -80 freezer. Tissues were cyrosectioned at -20C onto gene expression slides.
The Gene Expression Slide & Reagent kit was followed per the 10X Genomics protocol and used to produce sequencing libraries.

value: Intestinal Stricture

value: unsorted (all cells)


title: Inner Bowel Wall


title: Neurons_healthy_20196910

value: Neurons


title: epididymal white adipose tissue, HFD 4w, rep4

description: Library name: ewat_4w_4

value: epididymal white adipose tissue

value: HFD 4w


title: epididymal white adipose tissue, HFD 4w, rep5

description: Library name: ewat_4w_5


title: Microglia_healthy_20196910

value: Microglia


title: epididymal white adipose tissue, HFD 4w, rep6

description: Library name: ewat_4w_6

value: wild type


title: Astrocytes_healthy_20100742


title: epididymal white adipose tissue, HFD 6w, rep3

description: Library name: ewat_6w_3

value: male


title: Oligodendrocytes_healthy_20100742

value: Oligodendrocytes


title: Microglia_healthy_20100742


title: epididymal white adipose tissue, HFD 4w, rep1

description: Library name: ewat_4w_1


title: epididymal white adipose tissue, HFD 4w, rep3

description: Library name: ewat_4w_3


title: Neurons_healthy_20100742


title: shGREM1-1


title: epididymal white adipose tissue, HFD 4w, rep2

description: Library name: ewat_4w_2


title: epididymal white adipose tissue, HFD 3w, rep4

description: Library name: ewat_3w_4

value: HFD 3w


title: Neurons_healthy_PDC107

value: Female


title: epididymal white adipose tissue, HFD 3w, rep6

description: Library name: ewat_3w_6


title: Microglia_healthy_PDC107


title: epididymal white adipose tissue, HFD 3w, rep3

description: Library name: ewat_3w_3


title: epididymal white adipose tissue, HFD 3w, rep5

description: Library name: ewat_3w_5


title: Astrocytes_healthy_PDC107


title: Oligodendrocytes_healthy_PDC107


title: epididymal white adipose tissue, HFD 3w, rep1

description: Library name: ewat_3w_1


title: Oligodendrocytes_healthy_20160475


title: Oligodendrocytes_healthy_20196910


title: epididymal white adipose tissue, HFD 2w, rep6

description: Library name: ewat_2w_6

value: HFD 2w


title: epididymal white adipose tissue, HFD 2w, rep5

description: Library name: ewat_2w_5


title: Microglia_healthy_20160475


title: epididymal white adipose tissue, HFD 2w, rep3

description: Library name: ewat_2w_3


title: Neurons_healthy_20160475


title: epididymal white adipose tissue, HFD 2w, rep4

description: Library name: ewat_2w_4


title: Neurons_healthy_20150242


title: Oligodendrocytes_healthy_20150242


title: epididymal white adipose tissue, HFD 2w, rep2

description: Library name: ewat_2w_2


title: Astrocytes_healthy_20150242


title: epididymal white adipose tissue, HFD 10d, rep6

description: Library name: ewat_10d_6

value: HFD 10d


title: epididymal white adipose tissue, HFD 2w, rep1

description: Library name: ewat_2w_1


title: epididymal white adipose tissue, HFD 10d, rep5

description: Library name: ewat_10d_5


title: Microglia_healthy_20174903


title: Oligodendrocytes_healthy_20174903


title: epididymal white adipose tissue, HFD 10d, rep4

description: Library name: ewat_10d_4


title: epididymal white adipose tissue, HFD 10d, rep3

description: Library name: ewat_10d_3


title: Neurons_healthy_20174903


title: epididymal white adipose tissue, HFD 3w, rep2

description: Library name: ewat_3w_2


title: Microglia_healthy_20174936


title: epididymal white adipose tissue, HFD 10d, rep1

description: Library name: ewat_10d_1


title: Astrocytes_healthy_20160475


title: Astrocytes_healthy_20174936


title: epididymal white adipose tissue, HFD 1w, rep5

description: Library name: ewat_1w_5

value: HFD 1w


title: Oligodendrocytes_healthy_20174936

value: Male


title: Neurons_healthy_20174936

value: Brain (Cingulate Gyrus)


title: Oligodendrocytes_healthy_20163903


title: epididymal white adipose tissue, HFD 1w, rep2

description: Library name: ewat_1w_2


title: Neurons_healthy_20163903


title: Astrocytes_healthy_20163903

value: Astrocytes


title: epididymal white adipose tissue, HFD 1w, rep3

description: Library name: ewat_1w_3


title: epididymal white adipose tissue, HFD 1w, rep4

description: Library name: ewat_1w_4


title: Oligodendrocytes_healthy_PDC040


title: Microglia_healthy_20150242


title: epididymal white adipose tissue, HFD 3d, rep6

description: Library name: ewat_3d_6

value: HFD 3d


title: Microglia_healthy_20163903


title: Astrocytes_healthy_20174903


title: Microglia_healthy_PDC040


title: epididymal white adipose tissue, HFD 3d, rep2

description: Library name: ewat_3d_2


title: epididymal white adipose tissue, HFD 3d, rep3

description: Library name: ewat_3d_3


title: epididymal white adipose tissue, HFD 3d, rep1

description: Library name: ewat_3d_1


title: epididymal white adipose tissue, HFD 1d, rep6

description: Library name: ewat_1d_6

value: HFD 1d


title: epididymal white adipose tissue, HFD 3d, rep5

description: Library name: ewat_3d_5


title: epididymal white adipose tissue, HFD 3d, rep4

description: Library name: ewat_3d_4


title: Astrocytes_healthy_PDC040


title: epididymal white adipose tissue, HFD 10d, rep2

description: Library name: ewat_10d_2


title: Oligodendrocytes_healthy_CO75


title: Astrocytes_healthy_CO75


title: Microglia_healthy_CO75


title: Astrocytes_healthy_20141901


title: epididymal white adipose tissue, HFD 1d, rep4

description: Library name: ewat_1d_4


title: Neurons_healthy_20141901

value: Neurons


title: epididymal white adipose tissue, HFD 1w, rep6

description: Library name: ewat_1w_6

value: epididymal white adipose tissue


title: epididymal white adipose tissue, HFD 1d, rep5

description: Library name: ewat_1d_5


title: Neurons_healthy_CO75


title: epididymal white adipose tissue, HFD 1w, rep1

description: Library name: ewat_1w_1


title: epididymal white adipose tissue, HFD 1d, rep3

description: Library name: ewat_1d_3


title: epididymal white adipose tissue, HFD 0d, rep6

description: Library name: ewat_0d_6

value: HFD 0d


title: Microglia_healthy_20141901

value: Microglia


title: epididymal white adipose tissue, HFD 1d, rep2

description: Library name: ewat_1d_2

value: wild type


title: epididymal white adipose tissue, HFD 0d, rep5

description: Library name: ewat_0d_5

value: male


title: epididymal white adipose tissue, HFD 0d, rep3

description: Library name: ewat_0d_3


title: epididymal white adipose tissue, HFD 1d, rep1

description: Library name: ewat_1d_1


title: epididymal white adipose tissue, HFD 0d, rep2

description: Library name: ewat_0d_2


title: Oligodendrocytes_healthy_20163918

value: Oligodendrocytes


title: Microglia_healthy_20131187


title: brown adipose tissue, HFD 12w, rep6

description: Library name: bat_12w_6

source_name: brown adipose tissue

value: brown adipose tissue

value: HFD 12w


title: Neurons_healthy_PDC040

value: Female


title: epididymal white adipose tissue, HFD 0d, rep4

description: Library name: ewat_0d_4


title: Oligodendrocytes_healthy_20131187


title: Astrocytes_healthy_20131187


title: Oligodendrocytes_healthy_20141901


title: Neurons_healthy_20131187


title: Astrocytes_healthy_PDC128


title: Microglia_healthy_PDC128


title: epididymal white adipose tissue, HFD 0d, rep1

description: Library name: ewat_0d_1


title: Astrocytes_healthy_20163918


title: brown adipose tissue, HFD 10w, rep6

description: Library name: bat_10w_6

value: HFD 10w


title: brown adipose tissue, HFD 12w, rep5

description: Library name: bat_12w_5


title: brown adipose tissue, HFD 12w, rep3

description: Library name: bat_12w_3


title: brown adipose tissue, HFD 10w, rep5

description: Library name: bat_10w_5


title: brown adipose tissue, HFD 10w, rep3

description: Library name: bat_10w_3


title: Microglia_healthy_20163918


title: Neurons_healthy_20110891


title: Neurons_healthy_PDC128


title: Microglia_healthy_20110891


title: Astrocytes_healthy_20140411


title: brown adipose tissue, HFD 12w, rep2

description: Library name: bat_12w_2


title: Neurons_healthy_20140411


title: Astrocytes_healthy_20110891


title: brown adipose tissue, HFD 8w, rep6

description: Library name: bat_8w_6

value: HFD 8w


title: brown adipose tissue, HFD 12w, rep1

description: Library name: bat_12w_1


title: Oligodendrocytes_healthy_20110891

value: Male


title: brown adipose tissue, HFD 12w, rep4

description: Library name: bat_12w_4


title: Neurons_healthy_20163918

value: Brain (Cingulate Gyrus)


title: brown adipose tissue, HFD 10w, rep2

description: Library name: bat_10w_2


title: brown adipose tissue, HFD 10w, rep1

description: Library name: bat_10w_1


title: Oligodendrocytes_healthy_20140411


title: Oligodendrocytes_healthy_PDC128


title: Oligodendrocytes_healthy_20174918


title: brown adipose tissue, HFD 8w, rep5

description: Library name: bat_8w_5


title: brown adipose tissue, HFD 10w, rep4

description: Library name: bat_10w_4


title: Astrocytes_healthy_20174918

value: Astrocytes


title: brown adipose tissue, HFD 8w, rep2

description: Library name: bat_8w_2


title: brown adipose tissue, HFD 8w, rep4

description: Library name: bat_8w_4


title: Microglia_healthy_PDC091


title: Neurons_healthy_20174918


title: brown adipose tissue, HFD 7w, rep5

description: Library name: bat_7w_5

value: HFD 7w


title: brown adipose tissue, HFD 8w, rep1

description: Library name: bat_8w_1


title: brown adipose tissue, HFD 7w, rep3

description: Library name: bat_7w_3


title: Oligodendrocytes_healthy_PDC091


title: brown adipose tissue, HFD 8w, rep3

description: Library name: bat_8w_3


title: Microglia_healthy_20174918


title: Neurons_healthy_20130400


title: brown adipose tissue, HFD 7w, rep6

description: Library name: bat_7w_6


title: Microglia_healthy_20130400


title: brown adipose tissue, HFD 6w, rep6

description: Library name: bat_6w_6

value: HFD 6w


title: brown adipose tissue, HFD 7w, rep4

description: Library name: bat_7w_4


title: brown adipose tissue, HFD 7w, rep1

description: Library name: bat_7w_1


title: brown adipose tissue, HFD 6w, rep3

description: Library name: bat_6w_3


title: Neurons_healthy_PDC091

value: Neurons


title: Oligodendrocytes_healthy_BBN002.35133

source_name: Brain (Prefrontal Cortex)

value: Brain (Prefrontal Cortex)


title: Astrocytes_healthy_PDC091


title: Astrocytes_healthy_BBN002.35133


title: brown adipose tissue, HFD 7w, rep2

description: Library name: bat_7w_2


title: Astrocytes_healthy_BBN002.35222


title: Microglia_healthy_BBN002.35133


title: brown adipose tissue, HFD 6w, rep5

description: Library name: bat_6w_5


title: Neurons_healthy_BBN002.35133


title: Oligodendrocytes_healthy_20130400


title: Astrocytes_healthy_20130400


title: brown adipose tissue, HFD 6w, rep2

description: Library name: bat_6w_2


title: brown adipose tissue, HFD 6w, rep1

description: Library name: bat_6w_1


title: Oligodendrocytes_healthy_BBN002.35222


title: brown adipose tissue, HFD 5w, rep2

description: Library name: bat_5w_2

value: HFD 5w


title: Astrocytes_healthy_BBN002.36130


title: brown adipose tissue, HFD 5w, rep5

description: Library name: bat_5w_5


title: brown adipose tissue, HFD 5w, rep1

description: Library name: bat_5w_1


title: Microglia_healthy_BBN002.36130

value: Microglia


title: Oligodendrocytes_healthy_BBN002.36130


title: brown adipose tissue, HFD 5w, rep3

description: Library name: bat_5w_3

value: wild type


title: brown adipose tissue, HFD 6w, rep4

description: Library name: bat_6w_4

value: male


title: brown adipose tissue, HFD 5w, rep4

description: Library name: bat_5w_4


title: Neurons_healthy_BBN002.35222


title: brown adipose tissue, HFD 4w, rep5

description: Library name: bat_4w_5

value: HFD 4w


title: brown adipose tissue, HFD 4w, rep4

description: Library name: bat_4w_4

value: brown adipose tissue


title: brown adipose tissue, HFD 4w, rep3

description: Library name: bat_4w_3


title: Oligodendrocytes_healthy_BBN002.35532

value: Oligodendrocytes


title: brown adipose tissue, HFD 4w, rep6

description: Library name: bat_4w_6


title: brown adipose tissue, HFD 5w, rep6

description: Library name: bat_5w_6


title: brown adipose tissue, HFD 4w, rep2

description: Library name: bat_4w_2


title: Neurons_healthy_BBN002.35532

value: Female


title: Microglia_healthy_BBN002.35222


title: Astrocytes_healthy_BBN002.35532


title: Microglia_healthy_BBN002.35532


title: Microglia_healthy_BBN_24246


title: brown adipose tissue, HFD 4w, rep1

description: Library name: bat_4w_1


title: brown adipose tissue, HFD 3w, rep5

description: Library name: bat_3w_5

value: HFD 3w


title: brown adipose tissue, HFD 3w, rep4

description: Library name: bat_3w_4


title: Astrocytes_healthy_BBN_24246


title: brown adipose tissue, HFD 3w, rep6

description: Library name: bat_3w_6


title: Neurons_healthy_BBN002.36130


title: Oligodendrocytes_healthy_BBN_24246


title: Oligodendrocytes_healthy_BBN_20012


title: brown adipose tissue, HFD 3w, rep2

description: Library name: bat_3w_2


title: brown adipose tissue, HFD 3w, rep1

description: Library name: bat_3w_1


title: lung #28383, normal, rep# 2

city: Tampa

first: Joseph

last: Kissil

state: FL

address: 12902 Magnolia Dr

department: Molecular Oncology

institute: H Lee Moffitt Cancer Center and Research Institute

description: Library name: 28383-WT2

library_source: genomic

data_processing:
Raw sequencing reads were first trimmed with cutadapt 1.8.1 and aligned to the target genes with bwa 0.7.10-r789. Duplicate reads were removed with GATK 4.1.0.0. Variants were then called using Mutect2 based on tumor-only mode. Variant allele frequency no less than 0.01 was applied to selected confident SNPs and 98 InDels. SNPs and InDels that were found at consecutive loci within each sample or across samples were further merged to define highly mutated spots.
Assembly: GCF_000247695.1_HetGla_female_1.0_genomic.gff
Supplementary files format and content: The oncoplots were generated based on the appearance of the highly mutated spots using ComplexHeatmap. The selected variants (MuTect2 AF >=0.01) were annotated using tool SnpEff (Version 4.3t)

organism: Heterocephalus glaber

source_name: Lung

extract_protocol:
Laser capture microscopy (LCM) was completed using the Arcturus XT Laser Capture Microdissection System. Individual tumors were identified from the scanned H&E slides. An unstained, 10μm thick section of FFPE tissue was mounted on PEN membrane slides (2μm; Leica). Once tissue was cut, forceps were used to pick out dissected tissue from the slide and place in 1.5mL microcentrifuge tubes for DNA or RNA extraction.
Following PCR amplification (primers listed in Table 1 in the supplemental methods), amplicons were sequenced using the Illumina Nextera XT kit following the manufacturer’s protocol (Illumina). Briefly, following the quality control screening of 100ng of each amplicon on a 1% agarose gel, both amplicons for each sample were pooled equimolar and 1ng of input DNA was used for the Nextera tagmentation reaction, followed by PCR amplification and sample indexing. The libraries were purified, quantitated with the Qubit Fluorometer (ThermoFisher Scientific), and screened on the Agilent TapeStation 4200 using the TapeStation High-Sensitivity D1000 Screen Tape (Agilent Technologies). The final libraries were normalized, denatured, and sequenced on the Illumina MiSeq sequencer using a Nano flow cell to generate approximately 20,000 150-base read pairs per sample.

value: Lung


title: lung #015-11, tumor-derived, rep#7

description: Library name: 015-11-7


title: lung #015-11, tumor-derived, rep# 17

description: Library name: 015-11-17


title: brown adipose tissue, HFD 2w, rep6

description: Library name: bat_2w_6

value: HFD 2w


title: lung #28826, tumor-derived, rep# 11

description: Library name: 28826-11


title: lung #28826, tumor-derived, rep# 3

description: Library name: 28826-3


title: lung #28383, normal, rep# 1

description: Library name: 28383-WT1


title: lung #015-11, tumor-derived, rep# 16

description: Library name: 015-11-16


title: lung #015-11, tumor-derived, rep# 6

description: Library name: 015-11-6


title: Astrocytes_healthy_BBN_20012


title: brown adipose tissue, HFD 2w, rep5

description: Library name: bat_2w_5


title: Microglia_healthy_BBN002.30171


title: lung #28383, tumor-derived, rep# 8

description: Library name: 28383-8


title: lung #28826, tumor-derived, rep# 10

description: Library name: 28826-10


title: lung #28826, tumor-derived, rep# 2

description: Library name: 28826-2


title: brown adipose tissue, HFD 2w, rep3

description: Library name: bat_2w_3


title: brown adipose tissue, HFD 2w, rep4

description: Library name: bat_2w_4


title: Neurons_healthy_BBN_24246


title: lung #28383, tumor-derived, rep# 7

description: Library name: 28383-7


title: Oligodendrocytes_healthy_BBN002.30171


title: lung #015-11, tumor-derived, rep# 24

description: Library name: 015-11-24


title: brown adipose tissue, HFD 2w, rep2

description: Library name: bat_2w_2


title: brown adipose tissue, HFD 3w, rep3

description: Library name: bat_3w_3


title: Microglia_healthy_BBN_20012


title: lung #015-11, tumor-derived, rep# 13

description: Library name: 015-11-13


title: brown adipose tissue, HFD 2w, rep1

description: Library name: bat_2w_1


title: lung #015-11, tumor-derived, rep# 4

description: Library name: 015-11-4


title: Astrocytes_healthy_BBN002.30171


title: lung #28826, tumor-derived, rep# 1

description: Library name: 28826-1


title: lung #015-11, tumor-derived, rep# 23

description: Library name: 015-11-23


title: brown adipose tissue, HFD 10d, rep6

description: Library name: bat_10d_6

value: HFD 10d


title: Neurons_healthy_BBN_20012


title: Neurons_healthy_BBN002.30171


title: brown adipose tissue, HFD 10d, rep3

description: Library name: bat_10d_3


title: Astrocytes_healthy_BBN002.36178

value: Male

value: Astrocytes


title: lung #28383, tumor-derived, rep# 6

description: Library name: 28383-6


title: Neurons_healthy_BBN002.36178


title: lung #015-11, normal, rep# 2

description: Library name: 015-11-WT2


title: brown adipose tissue, HFD 10d, rep5

description: Library name: bat_10d_5


title: lung #015-11, tumor-derived, rep# 12

description: Library name: 015-11-12


title: lung #015-11, tumor-derived, rep# 11

description: Library name: 015-11-11


title: Microglia_healthy_BBN002.36178


title: lung #015-11, tumor-derived, rep# 3

description: Library name: 015-11-3


title: lung #28826, tumor-derived, rep# 7

description: Library name: 28826-7


title: lung #28826, tumor-derived, rep# 9

description: Library name: 28826-9


title: lung #28383, tumor-derived, rep# 12

description: Library name: 28383-12


title: Neurons_healthy_BBN002.33688


title: Oligodendrocytes_healthy_BBN002.36178


title: lung #015-11, normal, rep# 1

description: Library name: 015-11-WT1


title: lung #28383, tumor-derived, rep# 4

description: Library name: 28383-4


title: lung #28383, tumor-derived, rep# 5

description: Library name: 28383-5


title: brown adipose tissue, HFD 1w, rep5

description: Library name: bat_1w_5

value: HFD 1w


title: brown adipose tissue, HFD 10d, rep4

description: Library name: bat_10d_4


title: brown adipose tissue, HFD 10d, rep2

description: Library name: bat_10d_2


title: Oligodendrocytes_healthy_BBN002.33688


title: Microglia_healthy_BBN002.33688


title: lung #28383, tumor-derived, rep# 13

description: Library name: 28383-13


title: lung #015-11, tumor-derived, rep# 2

description: Library name: 015-11-2


title: brown adipose tissue, HFD 10d, rep1

description: Library name: bat_10d_1


title: Astrocytes_healthy_BBN002.33688


title: lung #015-11, tumor-derived, rep# 22

description: Library name: 015-11-22


title: brown adipose tissue, HFD 1w, rep6

description: Library name: bat_1w_6


title: lung #28826, tumor-derived, rep# 8

description: Library name: 28826-8


title: lung #28383, tumor-derived, rep# 11

description: Library name: 28383-11


title: lung #015-11, tumor-derived, rep# 20

description: Library name: 015-11-20


title: lung #015-11, tumor-derived, rep# 10

description: Library name: 015-11-10


title: brown adipose tissue, HFD 1w, rep4

description: Library name: bat_1w_4


title: Neurons_healthy_BBN002.35107

value: Neurons


title: lung #28383, tumor-derived, rep# 3

description: Library name: 28383-3


title: lung #015-11, tumor-derived, rep# 1

description: Library name: 015-11-1


title: lung #28826, normal, rep#2

description: Library name: 28826-WT2