title: SJSTS056890_204848240096_R04C01

description:
204848240096_R04C01
blood from survivor of childhood cancer and control


title: SJNBL056901_204848240100_R03C01

status: Public on Jan 13 2026

type: genomic

city: Memphis

first: Zhaoming

last: Wang

address: 262 Danny Thomas Place

country: USA

institute: St. Jude Children's Research Hospital

description:
204848240100_R03C01
blood from survivor of childhood cancer and control

hyb_protocol: Bisulfite-converted DNA was processed by following the Illumina Infinium Methylation Assay protocol for hybridization to MethylationEPIC BeadChips.

scan_protocol: Scanning used the Illumina HiScan system followed the Illumina Infinium Methylation Assay protocol.

data_processing: Genome-wide DNAm data were generated using Illumina Infinium MethylationEPIC BeadChip v1 (Illumina, San Diego, CA, USA), with DNA extracted from peripheral blood mononuclear cells (PBMCs) or saliva. Preprocessing was conducted using the minfi package in R, following established quality control procedures including a detection p-value ≤ 0.01. CpGs were excluded if they were located on sex chromosomes, contained single nucleotide polymorphisms (SNPs), or were previously identified as cross-reactive or non-specific. Quantile normalization was applied at the probe level to ensure comparability across samples.

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: genomic DNA derived from blood samples from survivor of childhood cancer and community control

label_protocol: Standard Illumina Protocol

extract_protocol: Genomic DNA (250 ng per sample) were treated with bisulfite using the Zymo EZ DNA Methylation Kit under the following thermos-cycling conditions: 16 cycles: 95 degrees Celsius for 30 sec, 50 degrees Celsius for 1 hour. Following bisulfite treatment, DNA samples were desulphonated, column purified, then eluted using 12 µl of elution buffer (Zymo Research Corp.). Treating DNA with sodium bisulfite selectively converts cytosine to uracil but preserves 5-methylcytosine, which is immune from deamination.

tag: tissue

value: peripheral blood mononuclear cells

tag: age

tag: Sex

value: female

tag: group

value: cancer survivor

tag: age at cancer diagnosis

tag: diagnostic group

value: Neuroblastoma

tag: average dose to whole heart, cgy

tag: race group

value: White

tag: base line visit start date

tag: base line visit finish

tag: age at death


title: SJSTS056898_204848240100_R01C01

description:
204848240100_R01C01
blood from survivor of childhood cancer and control

value: male

value: Soft tissue sarcoma


title: SJAML007113_204848240100_R06C01

description:
204848240100_R06C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJALL021954_204848240096_R05C01

description:
204848240096_R05C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJCNS003235_204848240096_R03C01

description:
204848240096_R03C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJSTS056889_204848240096_R02C01

description:
204848240096_R02C01
blood from survivor of childhood cancer and control

value: Other


title: SJRHB003931_204848240078_R08C01

description:
204848240078_R08C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJALL022028_204848240107_R03C01

description:
204848240107_R03C01
blood from survivor of childhood cancer and control


title: SJNBL056888_204848240096_R01C01

description:
204848240096_R01C01
blood from survivor of childhood cancer and control


title: SJALL004781_204848240078_R06C01

description:
204848240078_R06C01
blood from survivor of childhood cancer and control


title: SJCNS056900_204848240100_R02C01

description:
204848240100_R02C01
blood from survivor of childhood cancer and control


title: SJCNS056884_204848240078_R04C01

description:
204848240078_R04C01
blood from survivor of childhood cancer and control


title: SJRB005814_204848240078_R01C01

description:
204848240078_R01C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJCNS056911_204848240107_R01C01

description:
204848240107_R01C01
blood from survivor of childhood cancer and control


title: SJCNS056887_204848240078_R07C01

description:
204848240078_R07C01
blood from survivor of childhood cancer and control


title: SJCNS056892_204848240096_R07C01

description:
204848240096_R07C01
blood from survivor of childhood cancer and control


title: SJRB056886_204848240078_R05C01

description:
204848240078_R05C01
blood from survivor of childhood cancer and control

value: Black


title: SJCNS001236_204848240076_R05C01

description:
204848240076_R05C01
blood from survivor of childhood cancer and control


title: SJMB056881_204848240076_R08C01

description:
204848240076_R08C01
blood from survivor of childhood cancer and control


title: SJCNS003242_204848240076_R03C01

description:
204848240076_R03C01
blood from survivor of childhood cancer and control


title: SJALL004087_204848240078_R02C01

description:
204848240078_R02C01
blood from survivor of childhood cancer and control


title: SJCNS003233_204848240076_R06C01

description:
204848240076_R06C01
blood from survivor of childhood cancer and control


title: SJCNS056877_204848240076_R04C01

description:
204848240076_R04C01
blood from survivor of childhood cancer and control


title: SJNHL056874_204848240076_R02C01

description:
204848240076_R02C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJHL056871_204848240066_R07C01

description:
204848240066_R07C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: SJEPD001535_204848240066_R02C01

description:
204848240066_R02C01
blood from survivor of childhood cancer and control


title: SJWLM056869_204848240066_R06C01

description:
204848240066_R06C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJCNS009016_204848240066_R01C01

description:
204848240066_R01C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJRB056863_204848240059_R08C01

description:
204848240059_R08C01
blood from survivor of childhood cancer and control

value: female


title: SJNBL056862_204848240059_R07C01

description:
204848240059_R07C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: SJRB056868_204848240066_R05C01

description:
204848240066_R05C01
blood from survivor of childhood cancer and control


title: SJAML056880_204848240076_R07C01

description:
204848240076_R07C01
blood from survivor of childhood cancer and control


title: SJMEL056873_204848240066_R08C01

description:
204848240066_R08C01
blood from survivor of childhood cancer and control

value: Melanoma


title: SJWLM056859_204848240059_R06C01

description:
204848240059_R06C01
blood from survivor of childhood cancer and control


title: SJCNS001246_204848240059_R05C01

description:
204848240059_R05C01
blood from survivor of childhood cancer and control

value: White


title: SJWLM056858_204848240059_R04C01

description:
204848240059_R04C01
blood from survivor of childhood cancer and control

value: male


title: SJCNS056854_204848240059_R02C01

description:
204848240059_R02C01
blood from survivor of childhood cancer and control


title: SJALL040050_204848240059_R03C01

description:
204848240059_R03C01
blood from survivor of childhood cancer and control


title: SJCNS056867_204848240066_R04C01

description:
204848240066_R04C01
blood from survivor of childhood cancer and control


title: SJALL022009_204848240076_R01C01

description:
204848240076_R01C01
blood from survivor of childhood cancer and control


title: SJALL021931_204848240066_R03C01

description:
204848240066_R03C01
blood from survivor of childhood cancer and control


title: SJALL056853_204848240059_R01C01

description:
204848240059_R01C01
blood from survivor of childhood cancer and control


title: SJNHL056848_204848240030_R04C01

description:
204848240030_R04C01
blood from survivor of childhood cancer and control


title: SJRHB003944_204848240030_R07C01

description:
204848240030_R07C01
blood from survivor of childhood cancer and control


title: SJALL021968_204848240030_R05C01

description:
204848240030_R05C01
blood from survivor of childhood cancer and control


title: SJCNS056847_204848240030_R03C01

description:
204848240030_R03C01
blood from survivor of childhood cancer and control


title: SJRB056851_204848240030_R08C01

description:
204848240030_R08C01
blood from survivor of childhood cancer and control


title: SJALL022033_204848240030_R06C01

description:
204848240030_R06C01
blood from survivor of childhood cancer and control


title: SJRHB056846_204848240030_R02C01

description:
204848240030_R02C01
blood from survivor of childhood cancer and control


title: SJAML056838_204854830034_R05C01

description:
204854830034_R05C01
blood from survivor of childhood cancer and control


title: SJCNS056843_204848240030_R01C01

description:
204848240030_R01C01
blood from survivor of childhood cancer and control


title: SJWLM056840_204854830034_R07C01

description:
204854830034_R07C01
blood from survivor of childhood cancer and control


title: SJRB056832_204964480012_R04C01

description:
204964480012_R04C01
blood from survivor of childhood cancer and control


title: SJWLM056836_204854830034_R01C01

description:
204854830034_R01C01
blood from survivor of childhood cancer and control


title: SJCNS003254_204964480012_R08C01

description:
204964480012_R08C01
blood from survivor of childhood cancer and control


title: SJCNS001232_204854830034_R02C01

description:
204854830034_R02C01
blood from survivor of childhood cancer and control


title: SJEPD056827_204963470168_R06C01

description:
204963470168_R06C01
blood from survivor of childhood cancer and control


title: SJRB056536_204963470168_R02C01

description:
204963470168_R02C01
blood from survivor of childhood cancer and control


title: SJALL056540_204963470168_R04C01

description:
204963470168_R04C01
blood from survivor of childhood cancer and control


title: SJCNS019852_204854830034_R06C01

description:
204854830034_R06C01
blood from survivor of childhood cancer and control


title: SJRB056831_204964480012_R03C01

description:
204964480012_R03C01
blood from survivor of childhood cancer and control

value: Unknown


title: SJRB056830_204964480012_R01C01

description:
204964480012_R01C01
blood from survivor of childhood cancer and control


title: SJALL021969_204964480012_R07C01

description:
204964480012_R07C01
blood from survivor of childhood cancer and control


title: SJMEL056883_204848240078_R03C01

description:
204848240078_R03C01
blood from survivor of childhood cancer and control


title: SJCNS003214_204854830034_R03C01

description:
204854830034_R03C01
blood from survivor of childhood cancer and control


title: SJALL022058_204964480012_R06C01

description:
204964480012_R06C01
blood from survivor of childhood cancer and control


title: SJCNS056835_204964480012_R05C01

description:
204964480012_R05C01
blood from survivor of childhood cancer and control


title: SJRB056828_204963470168_R07C01

description:
204963470168_R07C01
blood from survivor of childhood cancer and control


title: SJALL021970_204963470168_R05C01

description:
204963470168_R05C01
blood from survivor of childhood cancer and control


title: SJCNS056829_204963470168_R08C01

description:
204963470168_R08C01
blood from survivor of childhood cancer and control


title: SJCNS056513_204963470167_R02C01

description:
204963470167_R02C01
blood from survivor of childhood cancer and control


title: SJALL040055_204963470168_R03C01

description:
204963470168_R03C01
blood from survivor of childhood cancer and control


title: SJALL003823_204963470150_R08C01

description:
204963470150_R08C01
blood from survivor of childhood cancer and control


title: SJCNS056533_204963470167_R08C01

description:
204963470167_R08C01
blood from survivor of childhood cancer and control


title: SJWLM056837_204854830034_R04C01

description:
204854830034_R04C01
blood from survivor of childhood cancer and control


title: SJMB056534_204963470168_R01C01

description:
204963470168_R01C01
blood from survivor of childhood cancer and control


title: SJNBL056532_204963470167_R07C01

description:
204963470167_R07C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJALL005316_204963470150_R05C01

description:
204963470150_R05C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJCNS056498_204963470148_R08C01

description:
204963470148_R08C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJRHB056500_204963470150_R02C01

description:
204963470150_R02C01
blood from survivor of childhood cancer and control


title: SJRB005819_204964480012_R02C01

description:
204964480012_R02C01
blood from survivor of childhood cancer and control


title: SJSTS056494_204963470148_R04C01

description:
204963470148_R04C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJRB056527_204963470167_R05C01

description:
204963470167_R05C01
blood from survivor of childhood cancer and control


title: SJMB056523_204963470167_R04C01

description:
204963470167_R04C01
blood from survivor of childhood cancer and control


title: SJALL056492_204963470148_R03C01

description:
204963470148_R03C01
blood from survivor of childhood cancer and control


title: SJAML056529_204963470167_R06C01

description:
204963470167_R06C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJRB056491_204963470148_R02C01

description:
204963470148_R02C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJCNS056520_204963470167_R03C01

description:
204963470167_R03C01
blood from survivor of childhood cancer and control


title: SJWLM056485_204963470147_R05C01

description:
204963470147_R05C01
blood from survivor of childhood cancer and control


title: SJST056486_204963470147_R06C01

description:
204963470147_R06C01
blood from survivor of childhood cancer and control

value: Other malignancy

value: Black


title: SJALL056512_204963470167_R01C01

description:
204963470167_R01C01
blood from survivor of childhood cancer and control


title: SJRHB056481_204963470147_R01C01

description:
204963470147_R01C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJNBL006083_204963470112_R07C01

description:
204963470112_R07C01
blood from survivor of childhood cancer and control


title: SJCNS056507_204963470150_R06C01

description:
204963470150_R06C01
blood from survivor of childhood cancer and control


title: SJLM056477_204963470112_R05C01

description:
204963470112_R05C01
blood from survivor of childhood cancer and control

value: Liver malignancies


title: SJRB056474_204963470112_R03C01

description:
204963470112_R03C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJCNS056508_204963470150_R07C01

description:
204963470150_R07C01
blood from survivor of childhood cancer and control

value: female


title: SJALL004788_204963470148_R07C01

description:
204963470148_R07C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: SJSTS056504_204963470150_R03C01

description:
204963470150_R03C01
blood from survivor of childhood cancer and control


title: SJRHB003927_204963470150_R04C01

description:
204963470150_R04C01
blood from survivor of childhood cancer and control


title: SJCNS056496_204963470148_R06C01

description:
204963470148_R06C01
blood from survivor of childhood cancer and control


title: SJRB005845_204963470150_R01C01

description:
204963470150_R01C01
blood from survivor of childhood cancer and control


title: SJCPC056495_204963470148_R05C01

description:
204963470148_R05C01
blood from survivor of childhood cancer and control


title: SJCNS003237_204963470147_R07C01

description:
204963470147_R07C01
blood from survivor of childhood cancer and control


title: SJALL004088_204963470148_R01C01

description:
204963470148_R01C01
blood from survivor of childhood cancer and control


title: SJMB056453_204963470105_R01C01

description:
204963470105_R01C01
blood from survivor of childhood cancer and control


title: SJOS056464_204963470105_R06C01

description:
204963470105_R06C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJRB005832_204963470147_R03C01

description:
204963470147_R03C01
blood from survivor of childhood cancer and control

value: White


title: SJRB056490_204963470147_R08C01

description:
204963470147_R08C01
blood from survivor of childhood cancer and control


title: SJNBL056482_204963470147_R02C01

description:
204963470147_R02C01
blood from survivor of childhood cancer and control

value: male


title: SJRB056449_204963470101_R06C01

description:
204963470101_R06C01
blood from survivor of childhood cancer and control


title: SJNBL056480_204963470112_R08C01

description:
204963470112_R08C01
blood from survivor of childhood cancer and control

value: Unknown


title: SJST056442_204963470101_R02C01

description:
204963470101_R02C01
blood from survivor of childhood cancer and control

value: Non-malignancy


title: SJRB005816_204963470147_R04C01

description:
204963470147_R04C01
blood from survivor of childhood cancer and control

value: Other


title: SJALL021913_204963470101_R01C01

description:
204963470101_R01C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJALL022011_204963470112_R06C01

description:
204963470112_R06C01
blood from survivor of childhood cancer and control


title: SJNHL056451_204963470101_R07C01

description:
204963470101_R07C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJACT056476_204963470112_R04C01

description:
204963470112_R04C01
blood from survivor of childhood cancer and control

value: Carcinoma


title: SJWLM056470_204963470112_R01C01

description:
204963470112_R01C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJAML056433_204963470100_R03C01

description:
204963470100_R03C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJNBL056468_204963470105_R08C01

description:
204963470105_R08C01
blood from survivor of childhood cancer and control

value: Neuroblastoma

value: Black


title: SJRB056471_204963470112_R02C01

description:
204963470112_R02C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJCNS003223_204963470100_R07C01

description:
204963470100_R07C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells

value: Central nervous system (CNS)


title: SJALL003851_204963470100_R04C01

description:
204963470100_R04C01
blood from survivor of childhood cancer and control

value: female

value: cancer survivor


title: SJRB056430_204963470100_R02C01

description:
204963470100_R02C01
blood from survivor of childhood cancer and control


title: SJHIST056428_204963470096_R08C01

description:
204963470096_R08C01
blood from survivor of childhood cancer and control

value: Histiocytosis

value: White


title: SJWLM056459_204963470105_R05C01

description:
204963470105_R05C01
blood from survivor of childhood cancer and control


title: SJRB056465_204963470105_R07C01

description:
204963470105_R07C01
blood from survivor of childhood cancer and control

value: male


title: SJRB056425_204963470096_R03C01

description:
204963470096_R03C01
blood from survivor of childhood cancer and control


title: SJMB056458_204963470105_R04C01

description:
204963470105_R04C01
blood from survivor of childhood cancer and control


title: SJWLM056457_204963470105_R03C01

description:
204963470105_R03C01
blood from survivor of childhood cancer and control


title: SJHL056456_204963470105_R02C01

description:
204963470105_R02C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma

value: Unknown


title: SJCNS056452_204963470101_R08C01

description:
204963470101_R08C01
blood from survivor of childhood cancer and control


title: SJRB005839_204848240147_R07C01

description:
204848240147_R07C01
blood from survivor of childhood cancer and control


title: SJST056420_204848240147_R06C01

description:
204848240147_R06C01
blood from survivor of childhood cancer and control

value: Non-malignancy


title: SJALL056423_204963470096_R02C01

description:
204963470096_R02C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJNHL056448_204963470101_R05C01

description:
204963470101_R05C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJALL021961_204963470101_R03C01

description:
204963470101_R03C01
blood from survivor of childhood cancer and control


title: SJNBL056446_204963470101_R04C01

description:
204963470101_R04C01
blood from survivor of childhood cancer and control


title: SJRB056439_204963470100_R08C01

description:
204963470100_R08C01
blood from survivor of childhood cancer and control


title: SJNBL006070_204848240147_R04C01

description:
204848240147_R04C01
blood from survivor of childhood cancer and control


title: SJALL005423_204848240147_R02C01

description:
204848240147_R02C01
blood from survivor of childhood cancer and control


title: SJRB056418_204848240147_R03C01

description:
204848240147_R03C01
blood from survivor of childhood cancer and control


title: SJCNS056436_204963470100_R06C01

description:
204963470100_R06C01
blood from survivor of childhood cancer and control


title: SJALL003122_204848240144_R06C01

description:
204848240144_R06C01
blood from survivor of childhood cancer and control


title: SJRHB056406_204848240144_R02C01

description:
204848240144_R02C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJALL004237_204848240144_R01C01

description:
204848240144_R01C01
blood from survivor of childhood cancer and control


title: SJCNS056402_204848240143_R06C01

description:
204848240143_R06C01
blood from survivor of childhood cancer and control


title: SJMEL056403_204848240143_R08C01

description:
204848240143_R08C01
blood from survivor of childhood cancer and control

value: Melanoma


title: SJRB056429_204963470100_R01C01

description:
204963470100_R01C01
blood from survivor of childhood cancer and control


title: SJNHL056427_204963470096_R05C01

description:
204963470096_R05C01
blood from survivor of childhood cancer and control


title: SJALL003113_204963470096_R06C01

description:
204963470096_R06C01
blood from survivor of childhood cancer and control


title: SJRB056400_204848240143_R04C01

description:
204848240143_R04C01
blood from survivor of childhood cancer and control


title: SJNHL056426_204963470096_R04C01

description:
204963470096_R04C01
blood from survivor of childhood cancer and control


title: SJALL021956_204963470096_R07C01

description:
204963470096_R07C01
blood from survivor of childhood cancer and control


title: SJRB056394_204848240143_R01C01

description:
204848240143_R01C01
blood from survivor of childhood cancer and control


title: SJLM056391_204848240142_R06C01

description:
204848240142_R06C01
blood from survivor of childhood cancer and control

value: Liver malignancies


title: SJCNS056390_204848240142_R04C01

description:
204848240142_R04C01
blood from survivor of childhood cancer and control

value: Black


title: SJCNS056434_204963470100_R05C01

description:
204963470100_R05C01
blood from survivor of childhood cancer and control


title: SJALL004241_204963470096_R01C01

description:
204963470096_R01C01
blood from survivor of childhood cancer and control


title: SJALL056383_204848240142_R02C01

description:
204848240142_R02C01
blood from survivor of childhood cancer and control


title: SJGCT056419_204848240147_R05C01

description:
204848240147_R05C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJALL003415_204848240144_R08C01

description:
204848240144_R08C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJALL005416_204848240126_R07C01

description:
204848240126_R07C01
blood from survivor of childhood cancer and control


title: SJAML056377_204848240126_R04C01

description:
204848240126_R04C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJRB056408_204848240144_R04C01

description:
204848240144_R04C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJEWS056416_204848240147_R01C01

description:
204848240147_R01C01
blood from survivor of childhood cancer and control

value: female

value: cancer survivor

value: Ewing sarcoma family of tumors


title: SJNBL006066_204848240126_R01C01

description:
204848240126_R01C01
blood from survivor of childhood cancer and control

value: Neuroblastoma

value: White


title: SJWLM056407_204848240144_R03C01

description:
204848240144_R03C01
blood from survivor of childhood cancer and control

value: male

value: Wilms tumor


title: SJNBL056409_204848240144_R05C01

description:
204848240144_R05C01
blood from survivor of childhood cancer and control


title: SJALL056368_204848240125_R07C01

description:
204848240125_R07C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJALL003316_204848240144_R07C01

description:
204848240144_R07C01
blood from survivor of childhood cancer and control


title: SJAML056401_204848240143_R05C01

description:
204848240143_R05C01
blood from survivor of childhood cancer and control


title: SJRB056399_204848240143_R03C01

description:
204848240143_R03C01
blood from survivor of childhood cancer and control


title: SJRB005838_204848240143_R02C01

description:
204848240143_R02C01
blood from survivor of childhood cancer and control


title: SJALL021939_204848240125_R02C01

description:
204848240125_R02C01
blood from survivor of childhood cancer and control


title: SJCNS056393_204848240142_R08C01

description:
204848240142_R08C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJCNS056364_204848240125_R04C01

description:
204848240125_R04C01
blood from survivor of childhood cancer and control


title: SJRB005803_204848240142_R05C01

description:
204848240142_R05C01
blood from survivor of childhood cancer and control


title: SJNBL006079_204848240126_R02C01

description:
204848240126_R02C01
blood from survivor of childhood cancer and control


title: SJSTS056366_204848240125_R06C01

description:
204848240125_R06C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJWLM056384_204848240142_R03C01

description:
204848240142_R03C01
blood from survivor of childhood cancer and control


title: SJNBL006107_204848240143_R07C01

description:
204848240143_R07C01
blood from survivor of childhood cancer and control


title: SJRB005844_204848240113_R07C01

description:
204848240113_R07C01
blood from survivor of childhood cancer and control

value: Other


title: SJRB056382_204848240142_R01C01

description:
204848240142_R01C01
blood from survivor of childhood cancer and control


title: SJNBL056381_204848240126_R08C01

description:
204848240126_R08C01
blood from survivor of childhood cancer and control

value: Unknown


title: SJRB056359_204848240113_R05C01

description:
204848240113_R05C01
blood from survivor of childhood cancer and control


title: SJALL003824_204848240142_R07C01

description:
204848240142_R07C01
blood from survivor of childhood cancer and control


title: SJRB005837_204848240113_R06C01

description:
204848240113_R06C01
blood from survivor of childhood cancer and control


title: SJRB056380_204848240126_R05C01

description:
204848240126_R05C01
blood from survivor of childhood cancer and control


title: SJWLM056348_204848240102_R06C01

description:
204848240102_R06C01
blood from survivor of childhood cancer and control


title: SJAML007141_204848240126_R06C01

description:
204848240126_R06C01
blood from survivor of childhood cancer and control


title: SJALL021946_204848240102_R03C01

description:
204848240102_R03C01
blood from survivor of childhood cancer and control


title: SJRHB003934_204848240125_R05C01

description:
204848240125_R05C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJEWS056374_204848240126_R03C01

description:
204848240126_R03C01
blood from survivor of childhood cancer and control


title: SJALL005527_204848240125_R08C01

description:
204848240125_R08C01
blood from survivor of childhood cancer and control

value: Black


title: SJALL056347_204848240102_R02C01

description:
204848240102_R02C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJWLM056363_204848240125_R03C01

description:
204848240125_R03C01
blood from survivor of childhood cancer and control


title: SJRB056361_204848240113_R08C01

description:
204848240113_R08C01
blood from survivor of childhood cancer and control


title: SJALL005404_204848240102_R05C01

description:
204848240102_R05C01
blood from survivor of childhood cancer and control


title: SJALL004771_204848240087_R08C01

description:
204848240087_R08C01
blood from survivor of childhood cancer and control


title: SJALL056346_204848240087_R07C01

description:
204848240087_R07C01
blood from survivor of childhood cancer and control


title: SJAML001408_204848240102_R01C01

description:
204848240102_R01C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJRB005817_204848240125_R01C01

description:
204848240125_R01C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJRB056337_204848240087_R01C01

description:
204848240087_R01C01
blood from survivor of childhood cancer and control

value: female


title: SJST056358_204848240113_R04C01

description:
204848240113_R04C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Non-malignancy


title: SJALL056357_204848240113_R03C01

description:
204848240113_R03C01
blood from survivor of childhood cancer and control


title: SJALL056353_204848240113_R02C01

description:
204848240113_R02C01
blood from survivor of childhood cancer and control


title: SJCNS056352_204848240113_R01C01

description:
204848240113_R01C01
blood from survivor of childhood cancer and control


title: SJRB056335_204848240086_R08C01

description:
204848240086_R08C01
blood from survivor of childhood cancer and control


title: SJWLM056351_204848240102_R08C01

description:
204848240102_R08C01
blood from survivor of childhood cancer and control


title: SJCNS056349_204848240102_R07C01

description:
204848240102_R07C01
blood from survivor of childhood cancer and control


title: SJRB056333_204848240086_R06C01

description:
204848240086_R06C01
blood from survivor of childhood cancer and control


title: SJALL005399_204848240102_R04C01

description:
204848240102_R04C01
blood from survivor of childhood cancer and control


title: SJNHL056332_204848240086_R05C01

description:
204848240086_R05C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJALL004153_204848240087_R06C01

description:
204848240087_R06C01
blood from survivor of childhood cancer and control


title: SJNBL006074_204848240085_R02C01

description:
204848240085_R02C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJHIST056345_204848240087_R05C01

description:
204848240087_R05C01
blood from survivor of childhood cancer and control

value: male

value: Histiocytosis

value: White


title: SJRB056344_204848240087_R04C01

description:
204848240087_R04C01
blood from survivor of childhood cancer and control


title: SJMB056309_204848240085_R04C01

description:
204848240085_R04C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJCNS001281_204848240082_R07C01

description:
204848240082_R07C01
blood from survivor of childhood cancer and control


title: SJGCT056340_204848240087_R02C01

description:
204848240087_R02C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJALL004718_204848240086_R02C01

description:
204848240086_R02C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJRB056334_204848240086_R07C01

description:
204848240086_R07C01
blood from survivor of childhood cancer and control


title: SJRHB056330_204848240086_R04C01

description:
204848240086_R04C01
blood from survivor of childhood cancer and control


title: SJSTS056313_204848240085_R05C01

description:
204848240085_R05C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJMB056290_204848240082_R05C01

description:
204848240082_R05C01
blood from survivor of childhood cancer and control


title: SJCNS056341_204848240087_R03C01

description:
204848240087_R03C01
blood from survivor of childhood cancer and control


title: SJALL004203_204848240086_R01C01

description:
204848240086_R01C01
blood from survivor of childhood cancer and control


title: SJCNS056287_204848240082_R03C01

description:
204848240082_R03C01
blood from survivor of childhood cancer and control


title: SJEPD056315_204848240085_R06C01

description:
204848240085_R06C01
blood from survivor of childhood cancer and control


title: SJALL056325_204848240086_R03C01

description:
204848240086_R03C01
blood from survivor of childhood cancer and control


title: SJOS004917_204848240082_R02C01

description:
204848240082_R02C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJCNS056318_204848240085_R07C01

description:
204848240085_R07C01
blood from survivor of childhood cancer and control


title: SJWLM056297_204848240082_R08C01

description:
204848240082_R08C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJNBL056303_204848240085_R03C01

description:
204848240085_R03C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJAML056298_204848240085_R01C01

description:
204848240085_R01C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJRB056320_204848240085_R08C01

description:
204848240085_R08C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJMEL056292_204848240082_R06C01

description:
204848240082_R06C01
blood from survivor of childhood cancer and control

value: female

value: Melanoma


title: SJCNS056277_204848240077_R07C01

description:
204848240077_R07C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: SJRB005820_204848240077_R03C01

description:
204848240077_R03C01
blood from survivor of childhood cancer and control


title: SJRHB056276_204848240077_R06C01

description:
204848240077_R06C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJALL056266_204848240063_R08C01

description:
204848240063_R08C01
blood from survivor of childhood cancer and control


title: SJNBL056275_204848240077_R05C01

description:
204848240077_R05C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJRB056265_204848240063_R07C01

description:
204848240063_R07C01
blood from survivor of childhood cancer and control


title: SJWLM056288_204848240082_R04C01

description:
204848240082_R04C01
blood from survivor of childhood cancer and control

value: Black


title: SJRHB056258_204848240063_R05C01

description:
204848240063_R05C01
blood from survivor of childhood cancer and control

value: male


title: SJRB005846_204848240082_R01C01

description:
204848240082_R01C01
blood from survivor of childhood cancer and control

value: Unknown


title: SJNBL006085_204848240063_R04C01

description:
204848240063_R04C01
blood from survivor of childhood cancer and control

value: White


title: SJWLM056273_204848240077_R04C01

description:
204848240077_R04C01
blood from survivor of childhood cancer and control


title: SJNBL056269_204848240077_R02C01

description:
204848240077_R02C01
blood from survivor of childhood cancer and control


title: SJRB005855_204848240062_R07C01

description:
204848240062_R07C01
blood from survivor of childhood cancer and control


title: SJHIST056268_204848240077_R01C01

description:
204848240077_R01C01
blood from survivor of childhood cancer and control

value: Histiocytosis


title: SJRB056262_204848240063_R06C01

description:
204848240063_R06C01
blood from survivor of childhood cancer and control


title: SJALL021991_204848240063_R01C01

description:
204848240063_R01C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJAML001410_204848240062_R03C01

description:
204848240062_R03C01
blood from survivor of childhood cancer and control


title: SJRB056248_204848240062_R01C01

description:
204848240062_R01C01
blood from survivor of childhood cancer and control


title: SJRB005836_204848240063_R03C01

description:
204848240063_R03C01
blood from survivor of childhood cancer and control


title: SJAML004332_204848240061_R04C01

description:
204848240061_R04C01
blood from survivor of childhood cancer and control


title: SJAML007110_204848240062_R08C01

description:
204848240062_R08C01
blood from survivor of childhood cancer and control


title: SJCNS056251_204848240062_R05C01

description:
204848240062_R05C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJEWS056250_204848240062_R04C01

description:
204848240062_R04C01
blood from survivor of childhood cancer and control

value: Ewing sarcoma family of tumors


title: SJRB056236_204848240061_R02C01

description:
204848240061_R02C01
blood from survivor of childhood cancer and control


title: SJRB056256_204848240062_R06C01

description:
204848240062_R06C01
blood from survivor of childhood cancer and control


title: SJCNS056247_204848240061_R08C01

description:
204848240061_R08C01
blood from survivor of childhood cancer and control


title: SJSTS018865_203239900211_R02C01

description:
203239900211_R02C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJRB056237_204848240061_R03C01

description:
204848240061_R03C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJRHB018850_203239900211_R04C01

description:
203239900211_R04C01
blood from survivor of childhood cancer and control


title: SJNBL019384_203239900211_R01C01

description:
203239900211_R01C01
blood from survivor of childhood cancer and control


title: SJRB056238_204848240061_R05C01

description:
204848240061_R05C01
blood from survivor of childhood cancer and control


title: SJNBL056249_204848240062_R02C01

description:
204848240062_R02C01
blood from survivor of childhood cancer and control


title: SJALL056243_204848240061_R07C01

description:
204848240061_R07C01
blood from survivor of childhood cancer and control


title: SJNHL019457_203259760113_R02C01

description:
203259760113_R02C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJWLM019630_203259760113_R07C01

description:
203259760113_R07C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJRB056234_204848240043_R08C01

description:
204848240043_R08C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJALL018474_203239900211_R03C01

description:
203239900211_R03C01
blood from survivor of childhood cancer and control

value: female


title: SJRB056240_204848240061_R06C01

description:
204848240061_R06C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: SJWLM019688_203259760113_R05C01

description:
203259760113_R05C01
blood from survivor of childhood cancer and control


title: SJNHL019460_203259760059_R07C01

description:
203259760059_R07C01
blood from survivor of childhood cancer and control


title: SJRHB019591_203259760113_R04C01

description:
203259760113_R04C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJLM019367_203259760113_R03C01

description:
203259760113_R03C01
blood from survivor of childhood cancer and control

value: Liver malignancies


title: SJPML030005_203259760113_R01C01

description:
203259760113_R01C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJMB056235_204848240061_R01C01

description:
204848240061_R01C01
blood from survivor of childhood cancer and control

value: Other


title: SJNHL019441_203259760059_R04C01

description:
203259760059_R04C01
blood from survivor of childhood cancer and control

value: male

value: Black


title: SJALL018446_203239900211_R05C01

description:
203239900211_R05C01
blood from survivor of childhood cancer and control

value: White


title: SJHIST019240_203259760059_R06C01

description:
203259760059_R06C01
blood from survivor of childhood cancer and control

value: Histiocytosis


title: SJHIST019242_203259760059_R08C01

description:
203259760059_R08C01
blood from survivor of childhood cancer and control


title: SJWLM019705_203259760059_R02C01

description:
203259760059_R02C01
blood from survivor of childhood cancer and control


title: SJNHL019459_203259760113_R06C01

description:
203259760113_R06C01
blood from survivor of childhood cancer and control


title: SJWLM019702_203259760059_R05C01

description:
203259760059_R05C01
blood from survivor of childhood cancer and control


title: SJOS019538_203259760014_R07C01

description:
203259760014_R07C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJCNS019149_203259760014_R02C01

description:
203259760014_R02C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJSTS019624_203259760013_R07C01

description:
203259760013_R07C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJWLM019673_203259760014_R01C01

description:
203259760014_R01C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJST019553_203259760059_R03C01

description:
203259760059_R03C01
blood from survivor of childhood cancer and control

value: Other malignancy


title: SJGCT019236_203259760059_R01C01

description:
203259760059_R01C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJALL018981_203259760013_R03C01

description:
203259760013_R03C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJSTS019600_203259760014_R06C01

description:
203259760014_R06C01
blood from survivor of childhood cancer and control

value: female


title: SJWLM019632_203259760014_R05C01

description:
203259760014_R05C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Wilms tumor


title: SJNHL019469_203259760014_R08C01

description:
203259760014_R08C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJWLM019672_203259760014_R04C01

description:
203259760014_R04C01
blood from survivor of childhood cancer and control


title: SJNBL019404_203259760013_R06C01

description:
203259760013_R06C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJHL019274_203259760014_R03C01

description:
203259760014_R03C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: SJLM019369_203259760013_R08C01

description:
203259760013_R08C01
blood from survivor of childhood cancer and control

value: male

value: Liver malignancies


title: SJNHL019451_203259600109_R04C01

description:
203259600109_R04C01
blood from survivor of childhood cancer and control

value: White


title: SJNPC019502_203259760013_R02C01

description:
203259760013_R02C01
blood from survivor of childhood cancer and control

value: Carcinoma

value: Black


title: SJNBL018739_203259600109_R06C01

description:
203259600109_R06C01
blood from survivor of childhood cancer and control


title: SJNBL019399_203259600109_R05C01

description:
203259600109_R05C01
blood from survivor of childhood cancer and control


title: SJNBL019425_203259600109_R08C01

description:
203259600109_R08C01
blood from survivor of childhood cancer and control


title: SJALL018984_203259600109_R03C01

description:
203259600109_R03C01
blood from survivor of childhood cancer and control


title: SJWLM019685_203259600109_R07C01

description:
203259600109_R07C01
blood from survivor of childhood cancer and control


title: SJALL019070_203259600085_R06C01

description:
203259600085_R06C01
blood from survivor of childhood cancer and control


title: SJNBL019427_203259600109_R02C01

description:
203259600109_R02C01
blood from survivor of childhood cancer and control


title: SJNHL019467_203259600085_R08C01

description:
203259600085_R08C01
blood from survivor of childhood cancer and control


title: SJLM019370_203259760013_R05C01

description:
203259760013_R05C01
blood from survivor of childhood cancer and control


title: SJOS019522_203259760013_R04C01

description:
203259760013_R04C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJWLM019693_203259600085_R07C01

description:
203259600085_R07C01
blood from survivor of childhood cancer and control


title: SJGCT019226_203259600085_R05C01

description:
203259600085_R05C01
blood from survivor of childhood cancer and control


title: SJST019550_203259060184_R05C01

description:
203259060184_R05C01
blood from survivor of childhood cancer and control


title: SJWLM019647_203259760013_R01C01

description:
203259760013_R01C01
blood from survivor of childhood cancer and control


title: SJOS019539_203259600085_R03C01

description:
203259600085_R03C01
blood from survivor of childhood cancer and control


title: SJALL019082_203259600085_R04C01

description:
203259600085_R04C01
blood from survivor of childhood cancer and control


title: SJNHL019500_203259060184_R04C01

description:
203259060184_R04C01
blood from survivor of childhood cancer and control


title: SJALL019046_203259600085_R02C01

description:
203259600085_R02C01
blood from survivor of childhood cancer and control


title: SJHM019549_203259060184_R07C01

description:
203259060184_R07C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJGCT019234_203259060184_R03C01

description:
203259060184_R03C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJWLM019674_203259060184_R06C01

description:
203259060184_R06C01
blood from survivor of childhood cancer and control


title: SJWLM019703_203259600085_R01C01

description:
203259600085_R01C01
blood from survivor of childhood cancer and control


title: SJCNS019148_203259600109_R01C01

description:
203259600109_R01C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJCA019120_203259060184_R08C01

description:
203259060184_R08C01
blood from survivor of childhood cancer and control


title: SJHL019332_203259060151_R06C01

description:
203259060151_R06C01
blood from survivor of childhood cancer and control


title: SJHIST019241_203259060151_R05C01

description:
203259060151_R05C01
blood from survivor of childhood cancer and control

value: Histiocytosis


title: SJNBL019396_203259060151_R04C01

description:
203259060151_R04C01
blood from survivor of childhood cancer and control


title: SJSTS019610_203259060151_R02C01

description:
203259060151_R02C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma

value: Other


title: SJNHL019453_203259060184_R01C01

description:
203259060184_R01C01
blood from survivor of childhood cancer and control

value: female

value: cancer survivor


title: SJNPC019506_203259060133_R08C01

description:
203259060133_R08C01
blood from survivor of childhood cancer and control


title: SJALL019016_203259060184_R02C01

description:
203259060184_R02C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJNHL019471_203259060133_R07C01

description:
203259060133_R07C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJNBL019382_203259060133_R06C01

description:
203259060133_R06C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJGCT019235_203259060151_R08C01

description:
203259060151_R08C01
blood from survivor of childhood cancer and control

value: male

value: Germ cell tumor


title: SJWLM019684_203259060133_R03C01

description:
203259060133_R03C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJOS019541_203259060151_R07C01

description:
203259060151_R07C01
blood from survivor of childhood cancer and control

value: White


title: SJALL019087_203259060082_R08C01

description:
203259060082_R08C01
blood from survivor of childhood cancer and control


title: SJALL019021_203259060151_R01C01

description:
203259060151_R01C01
blood from survivor of childhood cancer and control


title: SJCNS019163_203259060151_R03C01

description:
203259060151_R03C01
blood from survivor of childhood cancer and control


title: SJNHL019465_203259060082_R04C01

description:
203259060082_R04C01
blood from survivor of childhood cancer and control

value: Black


title: SJNPC019504_203259060082_R07C01

description:
203259060082_R07C01
blood from survivor of childhood cancer and control

value: Carcinoma


title: SJRHB019582_203259060052_R08C01

description:
203259060052_R08C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJGCT019229_203259060133_R05C01

description:
203259060133_R05C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJNBL019406_203259060133_R01C01

description:
203259060133_R01C01
blood from survivor of childhood cancer and control


title: SJOS019540_203259060052_R07C01

description:
203259060052_R07C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJAML019111_203259060011_R08C01

description:
203259060011_R08C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJALL019014_203259060052_R01C01

description:
203259060052_R01C01
blood from survivor of childhood cancer and control


title: SJRHB019577_203259060082_R03C01

description:
203259060082_R03C01
blood from survivor of childhood cancer and control


title: SJEWS019204_203259060082_R06C01

description:
203259060082_R06C01
blood from survivor of childhood cancer and control

value: Ewing sarcoma family of tumors


title: SJALL019012_203259060082_R02C01

description:
203259060082_R02C01
blood from survivor of childhood cancer and control


title: SJSTS019601_203259060133_R04C01

description:
203259060133_R04C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJCNS019138_203259060133_R02C01

description:
203259060133_R02C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJRHB019586_203259060011_R05C01

description:
203259060011_R05C01
blood from survivor of childhood cancer and control

value: female

value: cancer survivor


title: SJHL019362_203259060082_R01C01

description:
203259060082_R01C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: SJWLM019659_203259060052_R05C01

description:
203259060052_R05C01
blood from survivor of childhood cancer and control


title: SJNBL019401_203259060052_R03C01

description:
203259060052_R03C01
blood from survivor of childhood cancer and control

value: Neuroblastoma


title: SJWLM019700_203259060011_R04C01

description:
203259060011_R04C01
blood from survivor of childhood cancer and control


title: SJWLM019696_203259060052_R06C01

description:
203259060052_R06C01
blood from survivor of childhood cancer and control

value: male


title: SJWLM019695_203259060011_R03C01

description:
203259060011_R03C01
blood from survivor of childhood cancer and control


title: SJNBL019423_203259060082_R05C01

description:
203259060082_R05C01
blood from survivor of childhood cancer and control


title: SJWLM019671_203259060052_R04C01

description:
203259060052_R04C01
blood from survivor of childhood cancer and control


title: SJHL019361_203259060052_R02C01

description:
203259060052_R02C01
blood from survivor of childhood cancer and control


title: SJLM019366_203259060011_R02C01

description:
203259060011_R02C01
blood from survivor of childhood cancer and control

value: Liver malignancies


title: SJNBL019390_203259060011_R07C01

description:
203259060011_R07C01
blood from survivor of childhood cancer and control


title: SJHL019316_203259060011_R01C01

description:
203259060011_R01C01
blood from survivor of childhood cancer and control


title: SJNHL019808_203259060002_R05C01

description:
203259060002_R05C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJGCT019774_203259060002_R03C01

description:
203259060002_R03C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJALL019018_203259060002_R07C01

description:
203259060002_R07C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia

value: White


title: SJHL019782_203259060002_R06C01

description:
203259060002_R06C01
blood from survivor of childhood cancer and control


title: SJALL019728_203259060002_R02C01

description:
203259060002_R02C01
blood from survivor of childhood cancer and control


title: SJWLM019846_203259060002_R04C01

description:
203259060002_R04C01
blood from survivor of childhood cancer and control

value: Wilms tumor

value: Black


title: SJGCT019223_203259060011_R06C01

description:
203259060011_R06C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJHL019783_203271750103_R04C01

description:
203271750103_R04C01
blood from survivor of childhood cancer and control


title: SJHL019780_203271750103_R06C01

description:
203271750103_R06C01
blood from survivor of childhood cancer and control


title: SJALL019743_203271750103_R05C01

description:
203271750103_R05C01
blood from survivor of childhood cancer and control


title: SJNBL019804_203271750103_R03C01

description:
203271750103_R03C01
blood from survivor of childhood cancer and control


title: SJALL019060_203271750103_R08C01

description:
203271750103_R08C01
blood from survivor of childhood cancer and control


title: SJWLM019845_203259060002_R01C01

description:
203259060002_R01C01
blood from survivor of childhood cancer and control


title: SJWLM019844_203271750103_R02C01

description:
203271750103_R02C01
blood from survivor of childhood cancer and control


title: SJCNS019152_203271750032_R07C01

description:
203271750032_R07C01
blood from survivor of childhood cancer and control


title: SJWLM019841_203271750103_R01C01

description:
203271750103_R01C01
blood from survivor of childhood cancer and control


title: SJNHL019462_203271750032_R08C01

description:
203271750032_R08C01
blood from survivor of childhood cancer and control


title: SJRHB019831_203271750032_R06C01

description:
203271750032_R06C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJGCT019772_203271750032_R05C01

description:
203271750032_R05C01
blood from survivor of childhood cancer and control


title: SJHL019781_203271750032_R02C01

description:
203271750032_R02C01
blood from survivor of childhood cancer and control


title: SJALL019713_203259750009_R06C01

description:
203259750009_R06C01
blood from survivor of childhood cancer and control


title: SJLM019798_203259750009_R05C01

description:
203259750009_R05C01
blood from survivor of childhood cancer and control


title: SJALL019092_203271750103_R07C01

description:
203271750103_R07C01
blood from survivor of childhood cancer and control


title: SJGCT019230_203259750009_R08C01

description:
203259750009_R08C01
blood from survivor of childhood cancer and control


title: SJRB019816_203271750032_R01C01

description:
203271750032_R01C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJALL019037_203259750009_R07C01

description:
203259750009_R07C01
blood from survivor of childhood cancer and control


title: SJALL019726_203271750032_R04C01

description:
203271750032_R04C01
blood from survivor of childhood cancer and control


title: SJHL019776_203259750009_R01C01

description:
203259750009_R01C01
blood from survivor of childhood cancer and control


title: SJNBL019424_203259750007_R08C01

description:
203259750007_R08C01
blood from survivor of childhood cancer and control


title: SJNBL019803_203259750009_R02C01

description:
203259750009_R02C01
blood from survivor of childhood cancer and control


title: SJALL019724_203259750009_R03C01

description:
203259750009_R03C01
blood from survivor of childhood cancer and control


title: SJHL019796_203259750007_R07C01

description:
203259750007_R07C01
blood from survivor of childhood cancer and control


title: SJRHB019832_203259750009_R04C01

description:
203259750009_R04C01
blood from survivor of childhood cancer and control


title: SJWLM019849_203271750032_R03C01

description:
203271750032_R03C01
blood from survivor of childhood cancer and control


title: SJALL019721_203259750007_R04C01

description:
203259750007_R04C01
blood from survivor of childhood cancer and control


title: SJALL019722_203259750007_R03C01

description:
203259750007_R03C01
blood from survivor of childhood cancer and control


title: SJALL019747_203259750007_R01C01

description:
203259750007_R01C01
blood from survivor of childhood cancer and control


title: SJHL019795_203259750007_R05C01

description:
203259750007_R05C01
blood from survivor of childhood cancer and control


title: SJRB019818_203259750007_R02C01

description:
203259750007_R02C01
blood from survivor of childhood cancer and control


title: SJNBL019802_203259750007_R06C01

description:
203259750007_R06C01
blood from survivor of childhood cancer and control


title: SJALL019711_203257030080_R06C01

description:
203257030080_R06C01
blood from survivor of childhood cancer and control


title: SJHL019788_203257030080_R01C01

description:
203257030080_R01C01
blood from survivor of childhood cancer and control


title: SJHL019792_203257030080_R07C01

description:
203257030080_R07C01
blood from survivor of childhood cancer and control


title: SJALL019719_203257030080_R03C01

description:
203257030080_R03C01
blood from survivor of childhood cancer and control


title: SJALL019076_203253040208_R08C01

description:
203253040208_R08C01
blood from survivor of childhood cancer and control


title: SJALL019710_203257030080_R02C01

description:
203257030080_R02C01
blood from survivor of childhood cancer and control


title: SJALL003120_203257030080_R08C01

description:
203257030080_R08C01
blood from survivor of childhood cancer and control

value: Unknown


title: SJHL019791_203253040208_R06C01

description:
203253040208_R06C01
blood from survivor of childhood cancer and control


title: SJHL019794_203253040208_R04C01

description:
203253040208_R04C01
blood from survivor of childhood cancer and control


title: SJWLM019839_203253040208_R02C01

description:
203253040208_R02C01
blood from survivor of childhood cancer and control


title: SJHL019785_203253040208_R03C01

description:
203253040208_R03C01
blood from survivor of childhood cancer and control


title: SJALL019752_203253040208_R07C01

description:
203253040208_R07C01
blood from survivor of childhood cancer and control


title: SJALL019090_203249030213_R08C01

description:
203249030213_R08C01
blood from survivor of childhood cancer and control


title: SJNBL019805_203253040208_R01C01

description:
203253040208_R01C01
blood from survivor of childhood cancer and control


title: SJALL019720_203257030080_R04C01

description:
203257030080_R04C01
blood from survivor of childhood cancer and control


title: SJCNS019766_203249030213_R04C01

description:
203249030213_R04C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJNPC019800_203249030213_R03C01

description:
203249030213_R03C01
blood from survivor of childhood cancer and control

value: female

value: Carcinoma


title: SJEWS019771_203249030213_R07C01

description:
203249030213_R07C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Ewing sarcoma family of tumors


title: SJCNS019758_203249020209_R07C01

description:
203249020209_R07C01
blood from survivor of childhood cancer and control


title: SJCNS019762_203257030080_R05C01

description:
203257030080_R05C01
blood from survivor of childhood cancer and control

value: male


title: SJHL019789_203249030213_R06C01

description:
203249030213_R06C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: SJNHL019810_203249020209_R06C01

description:
203249020209_R06C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: SJLGG001203_203249030213_R05C01

description:
203249030213_R05C01
blood from survivor of childhood cancer and control


title: SJRB056257_204848240063_R02C01

description:
204848240063_R02C01
blood from survivor of childhood cancer and control


title: SJNHL019811_203253040208_R05C01

description:
203253040208_R05C01
blood from survivor of childhood cancer and control


title: SJCNS019761_203249030213_R02C01

description:
203249030213_R02C01
blood from survivor of childhood cancer and control


title: SJHL019777_203249020209_R03C01

description:
203249020209_R03C01
blood from survivor of childhood cancer and control


title: SJWLM019850_203249020209_R05C01

description:
203249020209_R05C01
blood from survivor of childhood cancer and control


title: SJCA019767_203249020209_R04C01

description:
203249020209_R04C01
blood from survivor of childhood cancer and control


title: SJOS019814_203249030213_R01C01

description:
203249030213_R01C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJALL003454_203249020168_R08C01

description:
203249020168_R08C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: SJCNS019755_203249020168_R07C01

description:
203249020168_R07C01
blood from survivor of childhood cancer and control

value: White


title: SJALL019753_203249020209_R02C01

description:
203249020209_R02C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia


title: SJALL019083_203249020209_R08C01

description:
203249020209_R08C01
blood from survivor of childhood cancer and control

value: Black


title: SJCNS019759_203249020168_R06C01

description:
203249020168_R06C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJALL019748_203249020168_R05C01

description:
203249020168_R05C01
blood from survivor of childhood cancer and control


title: SJALL019736_203249020209_R01C01

description:
203249020209_R01C01
blood from survivor of childhood cancer and control


title: SJALL019741_203249020168_R02C01

description:
203249020168_R02C01
blood from survivor of childhood cancer and control


title: SJALL019085_203249020022_R08C01

description:
203249020022_R08C01
blood from survivor of childhood cancer and control


title: SJALL019715_203249020168_R01C01

description:
203249020168_R01C01
blood from survivor of childhood cancer and control


title: SJHL019787_203249020168_R04C01

description:
203249020168_R04C01
blood from survivor of childhood cancer and control


title: SJLGG001211_203249020168_R03C01

description:
203249020168_R03C01
blood from survivor of childhood cancer and control


title: SJALL019744_203249020022_R05C01

description:
203249020022_R05C01
blood from survivor of childhood cancer and control


title: SJHL019786_203249020022_R07C01

description:
203249020022_R07C01
blood from survivor of childhood cancer and control


title: SJGCT019773_203244500148_R07C01

description:
203244500148_R07C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJRHB019835_203249020022_R06C01

description:
203249020022_R06C01
blood from survivor of childhood cancer and control

value: Rhabdomyosarcoma


title: SJRHB019833_203249020022_R02C01

description:
203249020022_R02C01
blood from survivor of childhood cancer and control


title: SJALL019723_203249020022_R01C01

description:
203249020022_R01C01
blood from survivor of childhood cancer and control


title: SJACT019754_203249020022_R04C01

description:
203249020022_R04C01
blood from survivor of childhood cancer and control


title: SJALL004736_203244500148_R08C01

description:
203244500148_R08C01
blood from survivor of childhood cancer and control


title: SJALL019742_203249020022_R03C01

description:
203249020022_R03C01
blood from survivor of childhood cancer and control


title: SJOS019813_203244500148_R02C01

description:
203244500148_R02C01
blood from survivor of childhood cancer and control


title: SJRB019824_203293640081_R06C01

description:
203293640081_R06C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJALL019725_203293640081_R07C01

description:
203293640081_R07C01
blood from survivor of childhood cancer and control


title: SJALL019718_203244500148_R01C01

description:
203244500148_R01C01
blood from survivor of childhood cancer and control


title: SJALL019732_203244500148_R03C01

description:
203244500148_R03C01
blood from survivor of childhood cancer and control


title: SJRB019829_203244500148_R05C01

description:
203244500148_R05C01
blood from survivor of childhood cancer and control


title: SJSTS019837_203244500148_R04C01

description:
203244500148_R04C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJHL018665_203293640081_R02C01

description:
203293640081_R02C01
blood from survivor of childhood cancer and control


title: SJALL019737_203293640075_R05C01

description:
203293640075_R05C01
blood from survivor of childhood cancer and control

value: female


title: SJALL019729_203293640075_R04C01

description:
203293640075_R04C01
blood from survivor of childhood cancer and control


title: SJALL019738_203293640081_R05C01

description:
203293640081_R05C01
blood from survivor of childhood cancer and control


title: SJALL019717_203293640075_R08C01

description:
203293640075_R08C01
blood from survivor of childhood cancer and control


title: SJSTS018871_203293640081_R01C01

description:
203293640081_R01C01
blood from survivor of childhood cancer and control


title: SJSTS018855_203293640081_R03C01

description:
203293640081_R03C01
blood from survivor of childhood cancer and control


title: SJALL019733_203293640081_R04C01

description:
203293640081_R04C01
blood from survivor of childhood cancer and control


title: SJALL019716_203293640058_R06C01

description:
203293640058_R06C01
blood from survivor of childhood cancer and control


title: SJRB019823_203293640075_R06C01

description:
203293640075_R06C01
blood from survivor of childhood cancer and control


title: SJALL019727_203293640058_R05C01

description:
203293640058_R05C01
blood from survivor of childhood cancer and control


title: SJNHL019806_203293640058_R04C01

description:
203293640058_R04C01
blood from survivor of childhood cancer and control


title: SJLM018726_203293640058_R03C01

description:
203293640058_R03C01
blood from survivor of childhood cancer and control

value: Liver malignancies


title: SJWLM018887_203293640075_R02C01

description:
203293640075_R02C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Wilms tumor


title: SJHL019778_203293640058_R07C01

description:
203293640058_R07C01
blood from survivor of childhood cancer and control

value: male


title: SJRB019817_203293640058_R08C01

description:
203293640058_R08C01
blood from survivor of childhood cancer and control


title: SJOS018819_203293640075_R03C01

description:
203293640075_R03C01
blood from survivor of childhood cancer and control


title: SJALL018497_203293640058_R01C01

description:
203293640058_R01C01
blood from survivor of childhood cancer and control


title: SJWLM019840_203293640036_R06C01

description:
203293640036_R06C01
blood from survivor of childhood cancer and control


title: SJRB019826_203293640036_R05C01

description:
203293640036_R05C01
blood from survivor of childhood cancer and control


title: SJSTS018853_203293640036_R02C01

description:
203293640036_R02C01
blood from survivor of childhood cancer and control


title: SJRB019828_203293640036_R07C01

description:
203293640036_R07C01
blood from survivor of childhood cancer and control


title: DLL3_noGF_3

type: SRA

city: montpellier

first: Jean-Philippe

last: Hugnot

address: 141 rue de la Cardonille

country: France

institute: Institut de génomique fonctionnelle

description: Library name: Sample 14

library_source: transcriptomic

data_processing:
This project uses the filtering software SOAPnuke developed by BGI independently for filtering. Version v1.5.2. Parameters -l 15 -q 0.2 -n 0.05
Remove the reads containing the adaptor(adaptor pollution)
Remove reads whose N content is greater than 5%
Remove low-quality reads (we define reads with bases with a quality score less than 15 as the proportion of total bases in the reads that are greater than 20% as low-quality reads)
Assembly: GCF_000001405.39_GRCh38.p13
Supplementary files format and content: TPM and read_count

molecule: total RNA

source_name: Brain

growth_protocol: Glioma cells were maintained in DMEM/F12 medium supplemented with N2, L-glutamine, ciprofloxacin, gentamicin, B27, heparin, and fungin. For growth factor conditions, EGF and FGF2 were added. Cells were cultured on plates coated with poly-D-lysine and mouse laminin."

extract_protocol:
Cells were lysed according to the RNeasy kit protocol (QIAGEN)."
Stranded mRNA Library construction procedure are listed below: 1) mRNA enrichment and purification: Oligo dT Selection (mRNA enrichment): Use oligo dT beads to enrich mRNA with poly A tail. 2) RNA fragment and reverse transcription/ Fragment the RNA and first-strand cDNA was generated using random N6-primed reverse transcription, followed by a second-strand cDNA synthesis with dUTP instead of dTTP. 3) End repair, add A and adaptor ligation: The synthesized cDNA was subjected to end-repair and then was 3' denylated. Adaptors were ligated to the ends of these 3' adenylated cDNA fragments; 4) PCR amplification: Prior to PCR amplification, the dUTP-marked strand is selectively degraded by Uracil-DNA-Glycosylase(UDG). The remaining strand is amplified to generate a cDNA library suitable for sequencing. Many rounds of PCR amplification were performed to enrich the purified cDNA template using PCR primer; 5) Single strand separation and cyclization: Denature the PCR product by heat and the single strand DNA is cyclized by splint oligo and DNA ligase; 6) DNA nanoball synthesis; 7) Sequencing on DNBSEQ (DNBSEQ Technology) platform

treatment_protocol: Cells were infected with a virus pLV[Exp]-EGFP:T2A:Puro-EF1A>hDLL3 or pLV[Exp]-EGFP:T2A:Puro-EF1A>Luciferase as control, then seed for 5 days with or without growth factors before RNA extraction

value: Brain

tag: cell line

tag: cell type

value: Grade 2 astrocytoma cells

tag: genotype

tag: treatment

value: No Growth Factor + DLL3 expression


title: DLL3_noGF_1

description: Library name: Sample 12


title: DLL3_GF_4

description: Library name: Sample 11

value: Growth Factor + DLL3 expression


title: SJALL019709_203293640036_R08C01

description:
203293640036_R08C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia

value: White


title: SJSTS018857_203293640036_R03C01

description:
203293640036_R03C01
blood from survivor of childhood cancer and control

value: Black


title: SJRB019822_203293640036_R04C01

description:
203293640036_R04C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: SJALL018484_203293640036_R01C01

description:
203293640036_R01C01
blood from survivor of childhood cancer and control


title: SJLGG001217_203293440211_R08C01

description:
203293440211_R08C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJWLM019842_203293640075_R07C01

description:
203293640075_R07C01
blood from survivor of childhood cancer and control


title: SJSTS018864_203293640075_R01C01

description:
203293640075_R01C01
blood from survivor of childhood cancer and control


title: SJWLM019843_203293440211_R07C01

description:
203293440211_R07C01
blood from survivor of childhood cancer and control


title: SJCNS019764_203293440211_R06C01

description:
203293440211_R06C01
blood from survivor of childhood cancer and control


title: DLL3_noGF_2

description: Library name: Sample 13


title: DLL3_GF_3

description: Library name: Sample 10


title: SJEWS018619_203293640058_R02C01

description:
203293640058_R02C01
blood from survivor of childhood cancer and control

value: Ewing sarcoma family of tumors


title: SJHL019779_203293440211_R04C01

description:
203293440211_R04C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: Ctrl_noGF_2

description: Library name: Sample 6

value: No Growth Factor + Luciderase expression


title: DLL3_GF_2

description: Library name: Sample 9


title: SJALL018533_203293440211_R02C01

description:
203293440211_R02C01
blood from survivor of childhood cancer and control

value: female


title: Ctrl_GF_3

description: Library name: Sample 3

value: Growth Factor + Luciderase expression


title: SJHL019793_203293440201_R08C01

description:
203293440201_R08C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: SJRB019820_203293440201_R05C01

description:
203293440201_R05C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: Ctrl_GF_4

description: Library name: Sample 4


title: DLL3_GF_1

description: Library name: Sample 8


title: SJCNS019763_203293440201_R06C01

description:
203293440201_R06C01
blood from survivor of childhood cancer and control


title: Ctrl_noGF_3

description: Library name: Sample 7


title: LGG349_noGF

description: Library name: Sample 20

data_processing:
This project uses the filtering software SOAPnuke developed by BGI independently for filtering. Version v1.5.2. Parameters -l 15 -q 0.2 -n 0.05
Remove the reads containing the adaptor(adaptor pollution)
Remove reads whose N content is greater than 5%
Remove low-quality reads (we define reads with bases with a quality score less than 15 as the proportion of total bases in the reads that are greater than 20% as low-quality reads)
Assembly: GCF_000001405.39_GRCh38.p13
Supplementary files format and content: excel file containing FPKM, TPM and read_count

growth_protocol: Glioma cells were maintained in DMEM-F12 medium supplemented  with N2, L-glutamine, Ciprofloxaine, Gentamycin, B27, Hepraine, Fungin. EGF and FGF2 were added for the growth factors conditions. Cells were cultured after coating the plate with Poly-D-lysin and mouse laminin

extract_protocol:
cells were collected and lysate according to the RNeasy kit from QIAGEN
Stranded mRNA Library construction procedure are listed below: 1) mRNA enrichment and purification: Oligo dT Selection (mRNA enrichment): Use oligo dT beads to enrich mRNA with poly A tail. 2) RNA fragment and reverse transcription/ Fragment the RNA and first-strand cDNA was generated using random N6-primed reverse transcription, followed by a second-strand cDNA synthesis with dUTP instead of dTTP. 3) End repair, add A and adaptor ligation: The synthesized cDNA was subjected to end-repair and then was 3' denylated. Adaptors were ligated to the ends of these 3' adenylated cDNA fragments; 4) PCR amplification: Prior to PCR amplification, the dUTP-marked strand is selectively degraded by Uracil-DNA-Glycosylase(UDG). The remaining strand is amplified to generate a cDNA library suitable for sequencing. Many rounds of PCR amplification were performed to enrich the purified cDNA template using PCR primer; 5) Single strand separation and cyclization: Denature the PCR product by heat and the single strand DNA is cyclized by splint oligo and DNA ligase; 6) DNA nanoball synthesis; 7) Sequencing on DNBSEQ (DNBSEQ Technology) platform

treatment_protocol: RNA extraction and RNA sequencing were performed after 5 days in culture with or without growth factors

value: Grade 4 astrocytoma cells

value: IDH1_Wild Type

value: No Growth Factor


title: SJWLM018904_203293440211_R03C01

description:
203293440211_R03C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: SJRB019821_203293440211_R05C01

description:
203293440211_R05C01
blood from survivor of childhood cancer and control


title: SJWLM018907_203293440211_R01C01

description:
203293440211_R01C01
blood from survivor of childhood cancer and control


title: SJHL019797_203293440201_R07C01

description:
203293440201_R07C01
blood from survivor of childhood cancer and control


title: Ctrl_noGF_1

description: Library name: Sample 5

value: Brain

value: Grade 2 astrocytoma cells


title: LGG85_GF

description: Library name: Sample 21

value: Growth Factors (EGF + FGF2)


title: Ctrl_GF_2

description: Library name: Sample 2


title: Ctrl_GF_1

description: Library name: Sample 1


title: LGG336_GF

description: Library name: Sample 17


title: LGG85_noGF

description: Library name: Sample 22


title: SJAML018559_203293440201_R03C01

description:
203293440201_R03C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia

value: White


title: SJCNS019757_203293440159_R08C01

description:
203293440159_R08C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells

value: male

value: Central nervous system (CNS)

value: Black


title: SJHL018671_203293440201_R01C01

description:
203293440201_R01C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: LGG275_GF

description: Library name: Sample 15


title: SJNBL006049_203293440201_R02C01

description:
203293440201_R02C01
blood from survivor of childhood cancer and control

value: female

value: Neuroblastoma


title: LGG349_GF

description: Library name: Sample 19


title: LGG275_noGF

description: Library name: Sample 16


title: SJSTS019838_203293440159_R06C01

description:
203293440159_R06C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Soft tissue sarcoma


title: SJAML007145_203293440201_R04C01

description:
203293440201_R04C01
blood from survivor of childhood cancer and control


title: SJCNS019765_203293440159_R07C01

description:
203293440159_R07C01
blood from survivor of childhood cancer and control


title: Gb4_GF

description: Library name: Sample 11

value: Glioblastoma cell

value: IDH1_Wild Type


title: SJGCT018636_203293440159_R01C01

description:
203293440159_R01C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: SJALL019714_203287590176_R05C01

description:
203287590176_R05C01
blood from survivor of childhood cancer and control

value: Acute lymphoblastic leukemia


title: Gb21_GF

description: Library name: Sample 9

value: Brain


title: BT088_GF

description: Library name: Sample 7

value: Grade 3 oligodendroglioma cells

value: Growth Factors (EGF + FGF2)


title: SJWLM019847_203287590176_R08C01

description:
203287590176_R08C01
blood from survivor of childhood cancer and control

value: Wilms tumor

value: White


title: Gb7_GF

description: Library name: Sample 13


title: SJWLM018915_203293440159_R02C01

description:
203293440159_R02C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells


title: BT237_noGF

description: Library name: Sample 4

value: No Growth Factor


title: Gb7_noGF

description: Library name: Sample 14


title: LGG336_noGF

description: Library name: Sample 18

value: Grade 2 astrocytoma cells


title: SJRB019819_203293440159_R05C01

description:
203293440159_R05C01
blood from survivor of childhood cancer and control

value: Retinoblastoma


title: SJALL018480_203293440159_R04C01

description:
203293440159_R04C01
blood from survivor of childhood cancer and control

value: female


title: SJRB019830_203287590176_R07C01

description:
203287590176_R07C01
blood from survivor of childhood cancer and control

value: male

value: Black


title: SJALL018543_203293440159_R03C01

description:
203293440159_R03C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: Gb21_noGF

description: Library name: Sample 10

value: Glioblastoma cell


title: Gb4_noGF

description: Library name: Sample 12

value: IDH1_Wild Type


title: SJNHL019809_203271750141_R07C01

description:
203271750141_R07C01
blood from survivor of childhood cancer and control

value: Non-Hodgkin lymphoma


title: BT054_noGF

description: Library name: Sample 6


title: SJHL019790_203287590176_R06C01

description:
203287590176_R06C01
blood from survivor of childhood cancer and control

value: Hodgkin lymphoma


title: SJGCT018631_203287590176_R02C01

description:
203287590176_R02C01
blood from survivor of childhood cancer and control

value: Germ cell tumor


title: P27_pos_2

description:
Library name: Sample 5
Quiescent cells

treatment_protocol: Cells were infected with a lentivirus containing mVenus/P27 construction, where mVenus is fused to P27. Then, cells were sorted based on their expression of mVenus. mVenus pos cell were P27 pos (quiescent) cells. mVenus neg cells were P27 neg (mitotics) cells.

value: Brain


title: SJRB018825_203287590176_R04C01

description:
203287590176_R04C01
blood from survivor of childhood cancer and control


title: SJWLM018917_203271750141_R03C01

description:
203271750141_R03C01
blood from survivor of childhood cancer and control


title: P27_neg_3

description:
Library name: Sample 3
Mitotic cells

value: Growth Factors (EGF + FGF2)


title: BT054_GF

description: Library name: Sample 5

value: Grade 3 oligodendroglioma cells


title: P27_pos_1

description:
Library name: Sample 4
Quiescent cells


title: SJAML018561_203287590176_R03C01

description:
203287590176_R03C01
blood from survivor of childhood cancer and control

value: Acute myeloid leukemia

value: White


title: SJALL019712_203271750099_R08C01

description:
203271750099_R08C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells

value: Acute lymphoblastic leukemia


title: U_3

description: Library name: Sample 9

data_processing:
This project uses the filtering software SOAPnuke developed by BGI independently for filtering. Version v1.5.2. Parameters -l 15 -q 0.2 -n 0.05
Remove the reads containing the adaptor(adaptor pollution)
Remove reads whose N content is greater than 5%
Remove low-quality reads (we define reads with bases with a quality score less than 15 as the proportion of total bases in the reads that are greater than 20% as low-quality reads)
Assembly: GCF_000001405.39_GRCh38.p13
Supplementary files format and content: FPKM, TPM and read_count

extract_protocol:
Cells were lysed according to the RNeasy kit protocol (QIAGEN).
Stranded mRNA Library construction procedure are listed below: 1) mRNA enrichment and purification: Oligo dT Selection (mRNA enrichment): Use oligo dT beads to enrich mRNA with poly A tail. 2) RNA fragment and reverse transcription/ Fragment the RNA and first-strand cDNA was generated using random N6-primed reverse transcription, followed by a second-strand cDNA synthesis with dUTP instead of dTTP. 3) End repair, add A and adaptor ligation: The synthesized cDNA was subjected to end-repair and then was 3' denylated. Adaptors were ligated to the ends of these 3' adenylated cDNA fragments; 4) PCR amplification: Prior to PCR amplification, the dUTP-marked strand is selectively degraded by Uracil-DNA-Glycosylase(UDG). The remaining strand is amplified to generate a cDNA library suitable for sequencing. Many rounds of PCR amplification were performed to enrich the purified cDNA template using PCR primer; 5) Single strand separation and cyclization: Denature the PCR product by heat and the single strand DNA is cyclized by splint oligo and DNA ligase; 6) DNA nanoball synthesis; 7) Sequencing on DNBSEQ (DNBSEQ Technology) platform

treatment_protocol: After 5 days culture without growth factors, cells were stained with CD44 and GLAST antibodies, then sorted to isolate CD44+GLAST+ (POS), and CD44-GLAST- (NEG) cells. RNA extraction of POS, NEG or unsorted (U) cells were performed directly after cell sorting

value: Grade 2 astrocytoma cells

value: No Growth Factor

tag: sorted cell_type

value: unsorted (U) cells


title: U_1

description: Library name: Sample 7


title: SJALL018483_203287590176_R01C01

description:
203287590176_R01C01
blood from survivor of childhood cancer and control

value: male


title: BT237_GF

description: Library name: Sample 3


title: SJCNS003252_203271750099_R06C01

description:
203271750099_R06C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Central nervous system (CNS)


title: BT138_noGF

description: Library name: Sample 2

value: IDH1_Wild Type


title: SJALL019735_203271750141_R08C01

description:
203271750141_R08C01
blood from survivor of childhood cancer and control


title: BT088_noGF

description: Library name: Sample 8


title: SJSTS019836_203271750099_R05C01

description:
203271750099_R05C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJALL018536_203271750099_R03C01

description:
203271750099_R03C01
blood from survivor of childhood cancer and control

value: female

value: Unknown


title: P27_pos_3

description:
Library name: Sample 6
Quiescent cells

value: Brain


title: BT138_GF

description: Library name: Sample 1

value: Growth Factors (EGF + FGF2)


title: SJNPCA018728_203271750099_R01C01

description:
203271750099_R01C01
blood from survivor of childhood cancer and control

value: Carcinoma

value: Black


title: NEG_3

description: Library name: Sample 3

value: oligodendrocyte-like CD44-GLAST- (NEG) cells


title: SJEWS019768_203271750141_R05C01

description:
203271750141_R05C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells

value: Ewing sarcoma family of tumors

value: White


title: NEG_1

description: Library name: Sample 1

value: Grade 2 astrocytoma cells

value: No Growth Factor


title: SJWLM018894_203271750141_R04C01

description:
203271750141_R04C01
blood from survivor of childhood cancer and control

value: Wilms tumor


title: P27_neg_2

description:
Library name: Sample 2
Mitotic cells


title: SJALL019731_203271750099_R07C01

description:
203271750099_R07C01
blood from survivor of childhood cancer and control

value: cancer survivor

value: Acute lymphoblastic leukemia


title: SJRHB019834_203271750141_R06C01

description:
203271750141_R06C01
blood from survivor of childhood cancer and control

value: male

value: Rhabdomyosarcoma


title: SJCNS019756_203271750073_R06C01

description:
203271750073_R06C01
blood from survivor of childhood cancer and control

value: Central nervous system (CNS)


title: SJALL018505_203271750141_R01C01

description:
203271750141_R01C01
blood from survivor of childhood cancer and control


title: Lung RNA-seq, EA-BN-H (200 mg/kg) replicate 3

city: Jeongeup-si

first: Ba-Wool

last: Lee

state: Jeollabuk-do

address: Korea Research Institute of Bioscience and Biotechnology, center 2

country: South Korea

description:
Library name: COPD_EA-H3
EA-BN-H group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.

data_processing:
Adapter/quality trimming was performed using Trimmomatic (v0.38).
Trimmed reads were aligned to the Mus musculus reference genome (mm10) using HISAT2 (v2.1.0).
Transcript assembly and quantification were performed using StringTie (v2.1.3b) based on the reference gene model.
Expression profiles were generated as read counts and normalized values (FPKM and TPM) for each sample (StringTie output).
Differential expression analysis was performed using DESeq2 with the negative binomial Wald test (nbinomWaldTest).
Assembly: Mus musculus reference genome: mm10 (Annotation: NCBI_108).
Supplementary files format and content: Processed data files include an expression profile table produced by StringTie for mm10. The table contains transcript/gene identifiers (e.g., Transcript_ID, Gene_ID, Gene_Symbol, Gene_Description) and per-sample quantitative values including Read_Count, FPKM, and TPM.
Supplementary files format and content: Example processed file name: Expression_Profile.mm10.transcript.xlsx (StringTie expression profile output).

organism: Mus musculus

source_name: lung

growth_protocol: C57BL/6N male mice were obtained from Orient Bio (Republic of Korea) and maintained under specific pathogen-free conditions in accordance with the Institutional Animal Care and Use Committee (IACUC) guidelines of KRIBB (Approval No.: KRIBB-AEC-23317).

extract_protocol:
Total RNA was extracted from mouse lung tissues using TRIzol reagent according to the manufacturer’s instructions. RNA integrity/quality was assessed (e.g., Agilent TapeStation RNA ScreenTape), and only high-quality RNA was used for library construction.
Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Gold Kit (Illumina) following the TruSeq Stranded Total RNA Reference Guide (1000000040499 v00). Sequencing was performed on an Illumina platform using paired-end reads (read length 101 bp).

treatment_protocol: Male C57BL/6N mice were divided into three groups for RNA-seq: NC, COPD, and EA-BN-H (200 mg/kg). LPS (0.5 mg/kg) and cigarette smoke condensate (CSC; 12.5 mg/kg) were intranasally instilled under light anesthesia on days 1, 6, and 13. Vehicle (2% DMSO) or EA-BN (200 mg/kg in 2% DMSO) was administered orally once daily from days 1 to 14. Lung tissues were collected on day 15.

value: lung

value: LPS/CSC intranasal (days 1,6,13) + EA-BN 200 mg/kg oral (days 1–14)


title: Lung RNA-seq, EA-BN-H (200 mg/kg) replicate 1

institute: Korea Research Institute of Bioscience and Biotechnology

description:
Library name: COPD_EA-H1
EA-BN-H group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.


title: P27_neg_1

description:
Library name: Sample 1
Mitotic cells

value: Brain

value: Growth Factors (EGF + FGF2)


title: SJSTS018858_203271750073_R04C01

description:
203271750073_R04C01
blood from survivor of childhood cancer and control

value: Soft tissue sarcoma


title: SJOS018815_203271750099_R04C01

description:
203271750099_R04C01
blood from survivor of childhood cancer and control

value: Osteosarcoma


title: SJNHL018796_203271750141_R02C01

description:
203271750141_R02C01
blood from survivor of childhood cancer and control

value: peripheral blood mononuclear cells

value: Non-Hodgkin lymphoma


title: U_2

description: Library name: Sample 8

value: unsorted (U) cells


title: SJALL003607_203271750099_R02C01

description:
203271750099_R02C01
blood from survivor of childhood cancer and control

value: female

value: White


title: Lung RNA-seq, COPD replicate 1

description:
Library name: COPD_1
COPD group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.

value: LPS (0.5 mg/kg) + CSC (12.5 mg/kg) intranasal (days 1,6,13) + vehicle oral


title: SJALL018431_203271750073_R03C01

description:
203271750073_R03C01
blood from survivor of childhood cancer and control

value: cancer survivor


title: Lung RNA-seq, NC replicate 3

description:
Library name: COPD_NC_3
NC group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.

value: PBS intranasal + vehicle (2% DMSO) oral


title: SJALL004732_203271750073_R01C01

description:
203271750073_R01C01
blood from survivor of childhood cancer and control

value: male

value: Acute lymphoblastic leukemia


title: POS_2

description: Library name: Sample 5

value: Grade 2 astrocytoma cells

value: No Growth Factor

value: astrocyte-like CD44+GLAST+ (POS) cells


title: SJALL019730_203271750073_R07C01

description:
203271750073_R07C01
blood from survivor of childhood cancer and control


title: POS_1

description: Library name: Sample 4

value: Brain


title: NEG_2

description: Library name: Sample 2

value: oligodendrocyte-like CD44-GLAST- (NEG) cells


title: POS_3

description: Library name: Sample 6


title: Lung RNA-seq, NC replicate 2

description:
Library name: COPD_NC_2
NC group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.

value: lung


title: Lung RNA-seq, NC replicate 1

description:
Library name: COPD_NC_1
NC group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.


title: SJALL019749_203271740052_R06C01

description:
203271740052_R06C01
blood from survivor of childhood cancer and control


title: E16 primary neuron CxB rep2

city: Cambridge

first: Bongmin

last: Bae

state: MA

address: 16 Divinity Ave

institute: Harvard University

description:
Library name: CTCF_CxB_2
CxB_4_genome1 and CxB_4_genome2

library_source: other

data_processing:
Adapters sequences were automatically detected and trimmed using TrimGalore. Reads were mapped to CAST SNP-masked GRCm39 genome using bowtie2 --local -X 2000. PCR duplicates were removed using Picard MarkDuplicates. Allele-specific reads were parsed using SNPsplit (v 0.6.0). Peak calling was performed using MACS2 or SICER2 callpeak inputing un-split bam files. Peaks from each bam file were merged and converted to saf format for its use in FeatureCounts. Read counts were performed by featureCounts -p --countReadPairs using SNP split bam files. Parental biased read enrichment was assessed in R using DEseq2. For visualization purposes, bam files were converted to bigwig files with CPM normalization.
Assembly: GRCm39
Supplementary files format and content: bigwig files
Library strategy: CUT&Tag

molecule: other

source_name: Cortical neurons

growth_protocol: Cortices from E16 embryos were carefully collected into cortical neuron plating media (Neurobasal supplemented with 2% B27, 2% FBS and 1X glutamine). Tissues were mechanically triturated into the plating media by pipetting up and down with 1000μL micropipette tips. Cell suspensions were filtered through a 40 μm cell strainer. Dissociated cells were plated onto Poly-D-lysine coated plates with plating media. Next day, media was replaced with cortical neuron maintenance media (Neurobasal supplemented with 2% B27 and 1X glutamine) and kept at 37°C with 5% CO2 until use. / NPCs were plated onto Geltrex coated plates at a density of 50,000 cells/mL (e.g. in 12 well plates 50,000 cells with 1 mL media, and in 6 well plates 100,000 cells in 2 mL media), and incubated for 3-4 hours to allow cell adherence. Transduction was performed at 7500 genomic particles per cell. Next day, NPC media was fed to keep multipotent state of the NPCs. After 48h of transduction, cells were replated onto new Geltrex coated plates with blasticidin-supplemented media. The next day, neuron differentiation was induced by replating NPCs onto PDL coated plates with cortical neuron media with blasticidin. The following day, cell culture media was optionally replaced to fresh cortical neuron media to enhance neuronal differentiation.   / Mouse ESCs were grown on 0.2% gelatin coated plate in ESC media (DMEM supplemented with 10 mM HEPES, 0.11 mM β-mercaptoethanol, 1× NEAA, 2 mM L-glutamine, 15% FBS, and 1000 U/mL LIF). For drug treatment, 5 μM GSK-3484862 was added to treatment groups and volume matched DMSO was added to controls.

extract_protocol:
Cells were gently washed with PBS and scraped into 1 ml PBS. An aliquot equivalent of 600,000 cells were used for each CUT&Tag sample. Cells were collected by centrifugation for 4 min at 300xg and supernatant was discarded.
Cells were resuspended in lysis buffer (10 mM Tris pH 7.4, 10 mM NaCl, 0.5 mM spermidine, 1.5 mM MgCl, 0.1 mM EDTA, and 0.25% IGEPAL CA-630) and incubated for 5 min on ice. Lysis was assisted mechanically by gently pipetting up and down 10 times with 1000 μL tips.  Successful lysis was confirmed by Typan blue staining and inspection under a light microscope. Nuclei were collected by centrifugation for 4 min at 800xg. Nuclei pellet was washed with CUT&Tag wash buffer and resuspended in 1.5 mL wash buffer. All the procedures were performed according to manufacturer’s guides. Concanavalin A beads were conditioned by washing with 1.6 mL 1X CUT&Tag binding buffer two times. Prepared beads were resuspended in binding buffer and slowly added to the nuclei suspension. For each sample, 20 μL of beads were used. Nuclei binding was performed for 10 min at room temperature in a rotator. Beads-bound nuclei were collected using a magnetic stand and clear supernatant was discarded. Beads were resuspended in 50 μL ice-cold CUT&Tag antibody buffer and desired amount of antibody was added (2 μL CTCF antibody). Suspension was gently mixed by vortexing. Primary antibody binding was performed overnight at 4°C. After a quick spin, beads were cleared on a magnetic stand and supernatant was discarded. Beads were resuspended in 100 μL of 1:100 diluted secondary antibody in CUT&Tag Dig-Wash buffer and incubated for 1h at room temp with rotation. After secondary antibody binding, three washes with 1 mL CUT&Tag Dig-Wash buffer were performed. Beads were resuspended in 1:100 diluted CUT&Tag transposomes in CUT&Tag Dig-300 buffer and incubated on an orbital rotator for 60 min at room temperature. After transposome binding, beads were washed three times with Dig-300 buffer. Tagmentation was induced by incubating beads in 125 μL of CUT&Tag tagmentation buffer for 1h at 37°C. After tagmentation, total DNA was extracted using columns. Purified DNA was PCR amplified using proper index primers. Then, the PCR reaction was purified using SPRI beads. Samples were pooled equimolar. Sequencing was performed PE150.

value: Cortical neurons

value: F1 CastxBL6


title: E16 primary neuron CxB rep1

description:
Library name: CTCF_CxB_1
CxB_3_genome1 and CxB_3_genome2


title: Lung RNA-seq, COPD replicate 3

description:
Library name: COPD_3
COPD group lung tissue collected on day 15; total RNA extracted using TRIzol; library prep TruSeq Stranded Total RNA Gold; PE sequencing.