title: Control_28dpi_156_RNA_Ln1

status: Public on Jan 30 2026

type: SRA

city: Ames

first: Torey

last: Looft

state: Iowa

address: 1920 Dayton Avenue

department: Food Safety and Enteric Pathogens Research Unit

country: USA

institute: USDA-ARS

description: Library name: Control_28dpi_156_RNA_Ln1

library_source: transcriptomic

data_processing:
Sequence files for individual lanes per sample were trimmed for quality and adaptor sequences using Trimmomatic (v 0.39)
Quality checked sequences from the 4 lanes per sample were concatenated into a single file per sample
Sequences were aligned to the reference genome using STAR aligner (v 2.7.10)
Open reading frames were counted from aligned reads per sample using  “featurecounts” from the R (v 4.3.2) Bioconductor (v  3.18) package Rsubread (v 2.16.1)
Assembly: ENSEMBL Gallus gallus reference genome Galgal_GRCg6a_111
Supplementary files format and content: .txt file contains raw counts for each sample

molecule: polyA RNA

organism: Gallus gallus

extract_protocol:
RNA was extracted from RNAlater stablized cecal tissue using the Qiagen Rneasy Mini kit with optional on-column DNase digestion
Poly-A tail selection

tag: tissue

value: cecal tissue

tag: cell type

value: epithelial

tag: microbialgroup

value: Control

tag: samplenumber

tag: age

value: 35 days

tag: salmonella status

value: Positive

tag: days post_salmonella


title: Control_28dpi_156_RNA_Ln4

description: Library name: Control_28dpi_156_RNA_Ln4


title: Control_28dpi_156_RNA_Ln3

description: Library name: Control_28dpi_156_RNA_Ln3


title: Control_28dpi_155_RNA_Ln1

description: Library name: Control_28dpi_155_RNA_Ln1


title: Control_28dpi_156_RNA_Ln2

description: Library name: Control_28dpi_156_RNA_Ln2


title: Control_28dpi_154_RNA_Ln2

description: Library name: Control_28dpi_154_RNA_Ln2


title: Control_28dpi_155_RNA_Ln3

description: Library name: Control_28dpi_155_RNA_Ln3


title: Control_28dpi_154_RNA_Ln4

description: Library name: Control_28dpi_154_RNA_Ln4


title: Control_28dpi_154_RNA_Ln3

description: Library name: Control_28dpi_154_RNA_Ln3


title: Control_28dpi_153_RNA_Ln4

description: Library name: Control_28dpi_153_RNA_Ln4


title: Control_28dpi_153_RNA_Ln2

description: Library name: Control_28dpi_153_RNA_Ln2


title: Control_28dpi_154_RNA_Ln1

description: Library name: Control_28dpi_154_RNA_Ln1


title: Control_28dpi_152_RNA_Ln3

description: Library name: Control_28dpi_152_RNA_Ln3


title: Control_28dpi_155_RNA_Ln4

description: Library name: Control_28dpi_155_RNA_Ln4


title: Control_28dpi_152_RNA_Ln4

description: Library name: Control_28dpi_152_RNA_Ln4


title: Control_28dpi_153_RNA_Ln1

description: Library name: Control_28dpi_153_RNA_Ln1


title: Control_28dpi_153_RNA_Ln3

description: Library name: Control_28dpi_153_RNA_Ln3


title: Control_28dpi_151_RNA_Ln3

description: Library name: Control_28dpi_151_RNA_Ln3


title: Control_28dpi_151_RNA_Ln2

description: Library name: Control_28dpi_151_RNA_Ln2


title: Control_28dpi_152_RNA_Ln1

description: Library name: Control_28dpi_152_RNA_Ln1


title: Control_28dpi_152_RNA_Ln2

description: Library name: Control_28dpi_152_RNA_Ln2


title: Control_28dpi_151_RNA_Ln1

description: Library name: Control_28dpi_151_RNA_Ln1


title: Control_28dpi_149_RNA_Ln4

description: Library name: Control_28dpi_149_RNA_Ln4


title: Control_28dpi_150_RNA_Ln4

description: Library name: Control_28dpi_150_RNA_Ln4


title: Control_28dpi_150_RNA_Ln3

description: Library name: Control_28dpi_150_RNA_Ln3


title: Control_28dpi_149_RNA_Ln2

description: Library name: Control_28dpi_149_RNA_Ln2


title: Control_28dpi_148_RNA_Ln4

description: Library name: Control_28dpi_148_RNA_Ln4


title: Control_28dpi_150_RNA_Ln2

description: Library name: Control_28dpi_150_RNA_Ln2


title: Control_28dpi_155_RNA_Ln2

description: Library name: Control_28dpi_155_RNA_Ln2


title: Control_28dpi_148_RNA_Ln3

description: Library name: Control_28dpi_148_RNA_Ln3


title: Control_28dpi_149_RNA_Ln3

description: Library name: Control_28dpi_149_RNA_Ln3


title: Control_28dpi_150_RNA_Ln1

description: Library name: Control_28dpi_150_RNA_Ln1


title: Control_28dpi_148_RNA_Ln2

description: Library name: Control_28dpi_148_RNA_Ln2


title: Control_28dpi_147_RNA_Ln1

description: Library name: Control_28dpi_147_RNA_Ln1


title: Control_28dpi_146_RNA_Ln4

description: Library name: Control_28dpi_146_RNA_Ln4


title: Control_28dpi_147_RNA_Ln3

description: Library name: Control_28dpi_147_RNA_Ln3


title: Control_28dpi_147_RNA_Ln4

description: Library name: Control_28dpi_147_RNA_Ln4


title: Control_28dpi_148_RNA_Ln1

description: Library name: Control_28dpi_148_RNA_Ln1


title: Control_28dpi_146_RNA_Ln3

description: Library name: Control_28dpi_146_RNA_Ln3


title: Control_28dpi_147_RNA_Ln2

description: Library name: Control_28dpi_147_RNA_Ln2


title: Control_28dpi_145_RNA_Ln3

description: Library name: Control_28dpi_145_RNA_Ln3


title: Control_28dpi_146_RNA_Ln1

description: Library name: Control_28dpi_146_RNA_Ln1


title: Control_28dpi_151_RNA_Ln4

description: Library name: Control_28dpi_151_RNA_Ln4


title: Control_28dpi_145_RNA_Ln2

description: Library name: Control_28dpi_145_RNA_Ln2


title: Control_14dpi_102_RNA_Ln4

description: Library name: Control_14dpi_102_RNA_Ln4

value: 21 days


title: Control_28dpi_146_RNA_Ln2

description: Library name: Control_28dpi_146_RNA_Ln2


title: Control_28dpi_145_RNA_Ln4

description: Library name: Control_28dpi_145_RNA_Ln4


title: Control_28dpi_149_RNA_Ln1

description: Library name: Control_28dpi_149_RNA_Ln1


title: Control_14dpi_101_RNA_Ln2

description: Library name: Control_14dpi_101_RNA_Ln2


title: Control_14dpi_101_RNA_Ln4

description: Library name: Control_14dpi_101_RNA_Ln4


title: Control_14dpi_102_RNA_Ln3

description: Library name: Control_14dpi_102_RNA_Ln3


title: Control_14dpi_102_RNA_Ln2

description: Library name: Control_14dpi_102_RNA_Ln2


title: Control_14dpi_100_RNA_Ln4

description: Library name: Control_14dpi_100_RNA_Ln4


title: Control_14dpi_101_RNA_Ln1

description: Library name: Control_14dpi_101_RNA_Ln1


title: Control_14dpi_102_RNA_Ln1

description: Library name: Control_14dpi_102_RNA_Ln1


title: Control_14dpi_099_RNA_Ln3

description: Library name: Control_14dpi_099_RNA_Ln3


title: Control_14dpi_100_RNA_Ln2

description: Library name: Control_14dpi_100_RNA_Ln2


title: Control_14dpi_099_RNA_Ln2

description: Library name: Control_14dpi_099_RNA_Ln2


title: Control_14dpi_100_RNA_Ln1

description: Library name: Control_14dpi_100_RNA_Ln1


title: Control_14dpi_099_RNA_Ln1

description: Library name: Control_14dpi_099_RNA_Ln1


title: Control_14dpi_099_RNA_Ln4

description: Library name: Control_14dpi_099_RNA_Ln4


title: Control_14dpi_098_RNA_Ln1

description: Library name: Control_14dpi_098_RNA_Ln1


title: Control_14dpi_097_RNA_Ln4

description: Library name: Control_14dpi_097_RNA_Ln4


title: Control_14dpi_098_RNA_Ln4

description: Library name: Control_14dpi_098_RNA_Ln4


title: Control_14dpi_097_RNA_Ln2

description: Library name: Control_14dpi_097_RNA_Ln2


title: Control_14dpi_108_RNA_Ln3

description: Library name: Control_14dpi_108_RNA_Ln3


title: Control_14dpi_098_RNA_Ln2

description: Library name: Control_14dpi_098_RNA_Ln2


title: Control_14dpi_101_RNA_Ln3

description: Library name: Control_14dpi_101_RNA_Ln3


title: Control_14dpi_098_RNA_Ln3

description: Library name: Control_14dpi_098_RNA_Ln3


title: Control_14dpi_097_RNA_Ln3

description: Library name: Control_14dpi_097_RNA_Ln3


title: Control_14dpi_097_RNA_Ln1

description: Library name: Control_14dpi_097_RNA_Ln1


title: Control_14dpi_108_RNA_Ln2

description: Library name: Control_14dpi_108_RNA_Ln2


title: Control_14dpi_107_RNA_Ln3

description: Library name: Control_14dpi_107_RNA_Ln3


title: Control_28dpi_145_RNA_Ln1

description: Library name: Control_28dpi_145_RNA_Ln1


title: Control_14dpi_106_RNA_Ln2

description: Library name: Control_14dpi_106_RNA_Ln2


title: Control_14dpi_100_RNA_Ln3

description: Library name: Control_14dpi_100_RNA_Ln3


title: Control_14dpi_108_RNA_Ln1

description: Library name: Control_14dpi_108_RNA_Ln1


title: Control_14dpi_107_RNA_Ln4

description: Library name: Control_14dpi_107_RNA_Ln4


title: Control_14dpi_106_RNA_Ln3

description: Library name: Control_14dpi_106_RNA_Ln3


title: Control_14dpi_108_RNA_Ln4

description: Library name: Control_14dpi_108_RNA_Ln4


title: Control_14dpi_107_RNA_Ln1

description: Library name: Control_14dpi_107_RNA_Ln1


title: Control_14dpi_106_RNA_Ln1

description: Library name: Control_14dpi_106_RNA_Ln1


title: Control_14dpi_105_RNA_Ln1

description: Library name: Control_14dpi_105_RNA_Ln1


title: Control_14dpi_107_RNA_Ln2

description: Library name: Control_14dpi_107_RNA_Ln2


title: Control_14dpi_105_RNA_Ln3

description: Library name: Control_14dpi_105_RNA_Ln3


title: Control_14dpi_105_RNA_Ln2

description: Library name: Control_14dpi_105_RNA_Ln2


title: Control_14dpi_104_RNA_Ln3

description: Library name: Control_14dpi_104_RNA_Ln3


title: Control_3dpi_060_RNA_Ln3

description: Library name: Control_3dpi_060_RNA_Ln3

value: 10 days


title: Control_14dpi_104_RNA_Ln4

description: Library name: Control_14dpi_104_RNA_Ln4


title: Control_14dpi_103_RNA_Ln1

description: Library name: Control_14dpi_103_RNA_Ln1


title: Control_14dpi_104_RNA_Ln2

description: Library name: Control_14dpi_104_RNA_Ln2


title: Control_3dpi_060_RNA_Ln4

description: Library name: Control_3dpi_060_RNA_Ln4


title: Control_14dpi_103_RNA_Ln4

description: Library name: Control_14dpi_103_RNA_Ln4


title: Control_3dpi_059_RNA_Ln3

description: Library name: Control_3dpi_059_RNA_Ln3


title: Control_14dpi_106_RNA_Ln4

description: Library name: Control_14dpi_106_RNA_Ln4


title: Control_3dpi_060_RNA_Ln1

description: Library name: Control_3dpi_060_RNA_Ln1


title: Control_14dpi_104_RNA_Ln1

description: Library name: Control_14dpi_104_RNA_Ln1


title: Control_3dpi_059_RNA_Ln2

description: Library name: Control_3dpi_059_RNA_Ln2


title: Control_3dpi_059_RNA_Ln4

description: Library name: Control_3dpi_059_RNA_Ln4


title: Control_3dpi_059_RNA_Ln1

description: Library name: Control_3dpi_059_RNA_Ln1


title: Control_3dpi_058_RNA_Ln2

description: Library name: Control_3dpi_058_RNA_Ln2


title: Control_3dpi_058_RNA_Ln4

description: Library name: Control_3dpi_058_RNA_Ln4


title: Control_3dpi_058_RNA_Ln1

description: Library name: Control_3dpi_058_RNA_Ln1


title: Control_3dpi_057_RNA_Ln4

description: Library name: Control_3dpi_057_RNA_Ln4


title: Control_14dpi_103_RNA_Ln3

description: Library name: Control_14dpi_103_RNA_Ln3


title: Control_3dpi_058_RNA_Ln3

description: Library name: Control_3dpi_058_RNA_Ln3


title: Control_3dpi_056_RNA_Ln4

description: Library name: Control_3dpi_056_RNA_Ln4


title: Control_3dpi_060_RNA_Ln2

description: Library name: Control_3dpi_060_RNA_Ln2


title: Control_3dpi_056_RNA_Ln3

description: Library name: Control_3dpi_056_RNA_Ln3


title: Control_3dpi_057_RNA_Ln3

description: Library name: Control_3dpi_057_RNA_Ln3


title: Control_14dpi_103_RNA_Ln2

description: Library name: Control_14dpi_103_RNA_Ln2


title: Control_3dpi_055_RNA_Ln4

description: Library name: Control_3dpi_055_RNA_Ln4


title: Control_3dpi_055_RNA_Ln1

description: Library name: Control_3dpi_055_RNA_Ln1


title: Control_3dpi_056_RNA_Ln2

description: Library name: Control_3dpi_056_RNA_Ln2


title: Control_3dpi_055_RNA_Ln3

description: Library name: Control_3dpi_055_RNA_Ln3


title: Control_3dpi_055_RNA_Ln2

description: Library name: Control_3dpi_055_RNA_Ln2


title: Control_3dpi_056_RNA_Ln1

description: Library name: Control_3dpi_056_RNA_Ln1


title: Control_3dpi_054_RNA_Ln4

description: Library name: Control_3dpi_054_RNA_Ln4


title: Control_3dpi_054_RNA_Ln3

description: Library name: Control_3dpi_054_RNA_Ln3


title: Control_3dpi_052_RNA_Ln4

description: Library name: Control_3dpi_052_RNA_Ln4


title: Control_3dpi_053_RNA_Ln4

description: Library name: Control_3dpi_053_RNA_Ln4


title: Control_3dpi_057_RNA_Ln1

description: Library name: Control_3dpi_057_RNA_Ln1


title: Control_3dpi_053_RNA_Ln1

description: Library name: Control_3dpi_053_RNA_Ln1


title: Control_3dpi_052_RNA_Ln3

description: Library name: Control_3dpi_052_RNA_Ln3


title: Control_14dpi_105_RNA_Ln4

description: Library name: Control_14dpi_105_RNA_Ln4


title: Control_3dpi_052_RNA_Ln1

description: Library name: Control_3dpi_052_RNA_Ln1


title: Control_3dpi_057_RNA_Ln2

description: Library name: Control_3dpi_057_RNA_Ln2


title: Control_3dpi_050_RNA_Ln3

description: Library name: Control_3dpi_050_RNA_Ln3


title: Control_3dpi_051_RNA_Ln1

description: Library name: Control_3dpi_051_RNA_Ln1


title: Control_3dpi_050_RNA_Ln4

description: Library name: Control_3dpi_050_RNA_Ln4


title: Control_3dpi_049_RNA_Ln4

description: Library name: Control_3dpi_049_RNA_Ln4


title: Control_3dpi_050_RNA_Ln2

description: Library name: Control_3dpi_050_RNA_Ln2


title: Control_3dpi_054_RNA_Ln2

description: Library name: Control_3dpi_054_RNA_Ln2


title: Control_3dpi_049_RNA_Ln3

description: Library name: Control_3dpi_049_RNA_Ln3


title: Control_3dpi_053_RNA_Ln2

description: Library name: Control_3dpi_053_RNA_Ln2


title: Control_3dpi_051_RNA_Ln2

description: Library name: Control_3dpi_051_RNA_Ln2


title: Control_3dpi_050_RNA_Ln1

description: Library name: Control_3dpi_050_RNA_Ln1


title: Control_3dpi_049_RNA_Ln2

description: Library name: Control_3dpi_049_RNA_Ln2


title: Control_0dpi_008_RNA_Ln4

description: Library name: Control_0dpi_008_RNA_Ln4

value: 7 days


title: Control_3dpi_054_RNA_Ln1

description: Library name: Control_3dpi_054_RNA_Ln1


title: Control_3dpi_049_RNA_Ln1

description: Library name: Control_3dpi_049_RNA_Ln1


title: Control_3dpi_051_RNA_Ln3

description: Library name: Control_3dpi_051_RNA_Ln3


title: Control_0dpi_008_RNA_Ln2

description: Library name: Control_0dpi_008_RNA_Ln2


title: Control_0dpi_008_RNA_Ln1

description: Library name: Control_0dpi_008_RNA_Ln1


title: Control_3dpi_053_RNA_Ln3

description: Library name: Control_3dpi_053_RNA_Ln3


title: Control_3dpi_052_RNA_Ln2

description: Library name: Control_3dpi_052_RNA_Ln2


title: Control_0dpi_007_RNA_Ln4

description: Library name: Control_0dpi_007_RNA_Ln4


title: Control_0dpi_007_RNA_Ln3

description: Library name: Control_0dpi_007_RNA_Ln3


title: Control_0dpi_007_RNA_Ln1

description: Library name: Control_0dpi_007_RNA_Ln1


title: Control_0dpi_006_RNA_Ln4

description: Library name: Control_0dpi_006_RNA_Ln4


title: Control_0dpi_006_RNA_Ln2

description: Library name: Control_0dpi_006_RNA_Ln2


title: Control_0dpi_006_RNA_Ln3

description: Library name: Control_0dpi_006_RNA_Ln3


title: Control_0dpi_007_RNA_Ln2

description: Library name: Control_0dpi_007_RNA_Ln2


title: Control_0dpi_005_RNA_Ln3

description: Library name: Control_0dpi_005_RNA_Ln3


title: Control_0dpi_005_RNA_Ln2

description: Library name: Control_0dpi_005_RNA_Ln2


title: Control_0dpi_005_RNA_Ln4

description: Library name: Control_0dpi_005_RNA_Ln4


title: Control_0dpi_004_RNA_Ln3

description: Library name: Control_0dpi_004_RNA_Ln3


title: Control_0dpi_004_RNA_Ln1

description: Library name: Control_0dpi_004_RNA_Ln1


title: Control_0dpi_004_RNA_Ln2

description: Library name: Control_0dpi_004_RNA_Ln2


title: Control_0dpi_004_RNA_Ln4

description: Library name: Control_0dpi_004_RNA_Ln4


title: Control_0dpi_003_RNA_Ln3

description: Library name: Control_0dpi_003_RNA_Ln3


title: Control_0dpi_006_RNA_Ln1

description: Library name: Control_0dpi_006_RNA_Ln1


title: Control_0dpi_003_RNA_Ln4

description: Library name: Control_0dpi_003_RNA_Ln4


title: Control_0dpi_003_RNA_Ln2

description: Library name: Control_0dpi_003_RNA_Ln2


title: Control_0dpi_003_RNA_Ln1

description: Library name: Control_0dpi_003_RNA_Ln1


title: Control_0dpi_002_RNA_Ln4

description: Library name: Control_0dpi_002_RNA_Ln4


title: Control_0dpi_002_RNA_Ln1

description: Library name: Control_0dpi_002_RNA_Ln1


title: Control_0dpi_002_RNA_Ln3

description: Library name: Control_0dpi_002_RNA_Ln3


title: Control_0dpi_010_RNA_Ln4

description: Library name: Control_0dpi_010_RNA_Ln4


title: Control_0dpi_010_RNA_Ln1

description: Library name: Control_0dpi_010_RNA_Ln1


title: Control_0dpi_009_RNA_Ln3

description: Library name: Control_0dpi_009_RNA_Ln3


title: Control_0dpi_010_RNA_Ln2

description: Library name: Control_0dpi_010_RNA_Ln2


title: Control_0dpi_009_RNA_Ln2

description: Library name: Control_0dpi_009_RNA_Ln2


title: Control_0dpi_009_RNA_Ln4

description: Library name: Control_0dpi_009_RNA_Ln4


title: Control_0dpi_008_RNA_Ln3

description: Library name: Control_0dpi_008_RNA_Ln3


title: Control_0dpi_001_RNA_Ln1

description: Library name: Control_0dpi_001_RNA_Ln1


title: CecalContents_28dpi_180_RNA_Ln4

description: Library name: CecalContents_28dpi_180_RNA_Ln4

value: Cecal Contents

value: Negative


title: Control_0dpi_009_RNA_Ln1

description: Library name: Control_0dpi_009_RNA_Ln1


title: Control_0dpi_001_RNA_Ln3

description: Library name: Control_0dpi_001_RNA_Ln3


title: Control_0dpi_001_RNA_Ln4

description: Library name: Control_0dpi_001_RNA_Ln4


title: Control_0dpi_005_RNA_Ln1

description: Library name: Control_0dpi_005_RNA_Ln1


title: CecalContents_28dpi_180_RNA_Ln2

description: Library name: CecalContents_28dpi_180_RNA_Ln2


title: Control_0dpi_001_RNA_Ln2

description: Library name: Control_0dpi_001_RNA_Ln2


title: Control_0dpi_002_RNA_Ln2

description: Library name: Control_0dpi_002_RNA_Ln2


title: CecalContents_28dpi_180_RNA_Ln1

description: Library name: CecalContents_28dpi_180_RNA_Ln1


title: CecalContents_28dpi_180_RNA_Ln3

description: Library name: CecalContents_28dpi_180_RNA_Ln3


title: CecalContents_28dpi_179_RNA_Ln2

description: Library name: CecalContents_28dpi_179_RNA_Ln2


title: CecalContents_28dpi_179_RNA_Ln4

description: Library name: CecalContents_28dpi_179_RNA_Ln4


title: CecalContents_28dpi_179_RNA_Ln3

description: Library name: CecalContents_28dpi_179_RNA_Ln3


title: CecalContents_28dpi_178_RNA_Ln4

description: Library name: CecalContents_28dpi_178_RNA_Ln4


title: CecalContents_28dpi_179_RNA_Ln1

description: Library name: CecalContents_28dpi_179_RNA_Ln1


title: CecalContents_28dpi_177_RNA_Ln4

description: Library name: CecalContents_28dpi_177_RNA_Ln4


title: CecalContents_28dpi_178_RNA_Ln1

description: Library name: CecalContents_28dpi_178_RNA_Ln1


title: CecalContents_28dpi_178_RNA_Ln3

description: Library name: CecalContents_28dpi_178_RNA_Ln3


title: Control_0dpi_010_RNA_Ln3

description: Library name: Control_0dpi_010_RNA_Ln3


title: Control_3dpi_051_RNA_Ln4

description: Library name: Control_3dpi_051_RNA_Ln4


title: CecalContents_28dpi_177_RNA_Ln3

description: Library name: CecalContents_28dpi_177_RNA_Ln3


title: CecalContents_28dpi_176_RNA_Ln4

description: Library name: CecalContents_28dpi_176_RNA_Ln4


title: CecalContents_28dpi_177_RNA_Ln2

description: Library name: CecalContents_28dpi_177_RNA_Ln2


title: CecalContents_28dpi_177_RNA_Ln1

description: Library name: CecalContents_28dpi_177_RNA_Ln1


title: CecalContents_28dpi_176_RNA_Ln2

description: Library name: CecalContents_28dpi_176_RNA_Ln2


title: CecalContents_28dpi_176_RNA_Ln3

description: Library name: CecalContents_28dpi_176_RNA_Ln3


title: CecalContents_28dpi_175_RNA_Ln3

description: Library name: CecalContents_28dpi_175_RNA_Ln3


title: CecalContents_28dpi_176_RNA_Ln1

description: Library name: CecalContents_28dpi_176_RNA_Ln1


title: CecalContents_28dpi_175_RNA_Ln2

description: Library name: CecalContents_28dpi_175_RNA_Ln2


title: CecalContents_28dpi_174_RNA_Ln1

description: Library name: CecalContents_28dpi_174_RNA_Ln1


title: CecalContents_28dpi_173_RNA_Ln3

description: Library name: CecalContents_28dpi_173_RNA_Ln3


title: CecalContents_28dpi_173_RNA_Ln2

description: Library name: CecalContents_28dpi_173_RNA_Ln2


title: CecalContents_28dpi_174_RNA_Ln4

description: Library name: CecalContents_28dpi_174_RNA_Ln4


title: CecalContents_28dpi_175_RNA_Ln1

description: Library name: CecalContents_28dpi_175_RNA_Ln1


title: CecalContents_28dpi_174_RNA_Ln2

description: Library name: CecalContents_28dpi_174_RNA_Ln2


title: CecalContents_28dpi_172_RNA_Ln3

description: Library name: CecalContents_28dpi_172_RNA_Ln3


title: CecalContents_28dpi_173_RNA_Ln1

description: Library name: CecalContents_28dpi_173_RNA_Ln1


title: CecalContents_28dpi_172_RNA_Ln4

description: Library name: CecalContents_28dpi_172_RNA_Ln4


title: CecalContents_28dpi_171_RNA_Ln4

description: Library name: CecalContents_28dpi_171_RNA_Ln4


title: CecalContents_28dpi_178_RNA_Ln2

description: Library name: CecalContents_28dpi_178_RNA_Ln2


title: CecalContents_28dpi_175_RNA_Ln4

description: Library name: CecalContents_28dpi_175_RNA_Ln4


title: CecalContents_28dpi_172_RNA_Ln1

description: Library name: CecalContents_28dpi_172_RNA_Ln1


title: CecalContents_28dpi_172_RNA_Ln2

description: Library name: CecalContents_28dpi_172_RNA_Ln2


title: CecalContents_28dpi_171_RNA_Ln3

description: Library name: CecalContents_28dpi_171_RNA_Ln3


title: CecalContents_28dpi_170_RNA_Ln1

description: Library name: CecalContents_28dpi_170_RNA_Ln1


title: CecalContents_28dpi_171_RNA_Ln2

description: Library name: CecalContents_28dpi_171_RNA_Ln2


title: CecalContents_28dpi_171_RNA_Ln1

description: Library name: CecalContents_28dpi_171_RNA_Ln1


title: CecalContents_28dpi_170_RNA_Ln4

description: Library name: CecalContents_28dpi_170_RNA_Ln4


title: CecalContents_28dpi_169_RNA_Ln4

description: Library name: CecalContents_28dpi_169_RNA_Ln4


title: CecalContents_28dpi_170_RNA_Ln2

description: Library name: CecalContents_28dpi_170_RNA_Ln2


title: CecalContents_28dpi_169_RNA_Ln2

description: Library name: CecalContents_28dpi_169_RNA_Ln2


title: CecalContents_28dpi_174_RNA_Ln3

description: Library name: CecalContents_28dpi_174_RNA_Ln3


title: CecalContents_14dpi_132_RNA_Ln4

description: Library name: CecalContents_14dpi_132_RNA_Ln4


title: CecalContents_28dpi_169_RNA_Ln1

description: Library name: CecalContents_28dpi_169_RNA_Ln1


title: CecalContents_28dpi_173_RNA_Ln4

description: Library name: CecalContents_28dpi_173_RNA_Ln4


title: CecalContents_28dpi_169_RNA_Ln3

description: Library name: CecalContents_28dpi_169_RNA_Ln3


title: CecalContents_14dpi_131_RNA_Ln4

description: Library name: CecalContents_14dpi_131_RNA_Ln4


title: CecalContents_14dpi_132_RNA_Ln3

description: Library name: CecalContents_14dpi_132_RNA_Ln3


title: CecalContents_14dpi_132_RNA_Ln2

description: Library name: CecalContents_14dpi_132_RNA_Ln2


title: CecalContents_14dpi_131_RNA_Ln3

description: Library name: CecalContents_14dpi_131_RNA_Ln3


title: CecalContents_14dpi_131_RNA_Ln2

description: Library name: CecalContents_14dpi_131_RNA_Ln2


title: CecalContents_14dpi_132_RNA_Ln1

description: Library name: CecalContents_14dpi_132_RNA_Ln1


title: CecalContents_14dpi_131_RNA_Ln1

description: Library name: CecalContents_14dpi_131_RNA_Ln1


title: CecalContents_14dpi_129_RNA_Ln4

description: Library name: CecalContents_14dpi_129_RNA_Ln4


title: CecalContents_14dpi_130_RNA_Ln1

description: Library name: CecalContents_14dpi_130_RNA_Ln1


title: CecalContents_14dpi_130_RNA_Ln3

description: Library name: CecalContents_14dpi_130_RNA_Ln3


title: CecalContents_14dpi_130_RNA_Ln2

description: Library name: CecalContents_14dpi_130_RNA_Ln2


title: CecalContents_14dpi_130_RNA_Ln4

description: Library name: CecalContents_14dpi_130_RNA_Ln4


title: CecalContents_28dpi_170_RNA_Ln3

description: Library name: CecalContents_28dpi_170_RNA_Ln3


title: CecalContents_14dpi_129_RNA_Ln2

description: Library name: CecalContents_14dpi_129_RNA_Ln2


title: CecalContents_14dpi_128_RNA_Ln4

description: Library name: CecalContents_14dpi_128_RNA_Ln4


title: CecalContents_14dpi_128_RNA_Ln2

description: Library name: CecalContents_14dpi_128_RNA_Ln2


title: CecalContents_14dpi_128_RNA_Ln3

description: Library name: CecalContents_14dpi_128_RNA_Ln3


title: CecalContents_14dpi_128_RNA_Ln1

description: Library name: CecalContents_14dpi_128_RNA_Ln1


title: CecalContents_14dpi_129_RNA_Ln3

description: Library name: CecalContents_14dpi_129_RNA_Ln3


title: CecalContents_14dpi_129_RNA_Ln1

description: Library name: CecalContents_14dpi_129_RNA_Ln1


title: CecalContents_14dpi_126_RNA_Ln4

description: Library name: CecalContents_14dpi_126_RNA_Ln4


title: CecalContents_14dpi_127_RNA_Ln1

description: Library name: CecalContents_14dpi_127_RNA_Ln1


title: CecalContents_14dpi_127_RNA_Ln3

description: Library name: CecalContents_14dpi_127_RNA_Ln3


title: CecalContents_14dpi_127_RNA_Ln2

description: Library name: CecalContents_14dpi_127_RNA_Ln2


title: CecalContents_14dpi_126_RNA_Ln2

description: Library name: CecalContents_14dpi_126_RNA_Ln2


title: CecalContents_14dpi_126_RNA_Ln3

description: Library name: CecalContents_14dpi_126_RNA_Ln3


title: CecalContents_14dpi_125_RNA_Ln2

description: Library name: CecalContents_14dpi_125_RNA_Ln2


title: CecalContents_14dpi_126_RNA_Ln1

description: Library name: CecalContents_14dpi_126_RNA_Ln1


title: CecalContents_14dpi_127_RNA_Ln4

description: Library name: CecalContents_14dpi_127_RNA_Ln4


title: CecalContents_14dpi_125_RNA_Ln3

description: Library name: CecalContents_14dpi_125_RNA_Ln3


title: CecalContents_14dpi_125_RNA_Ln4

description: Library name: CecalContents_14dpi_125_RNA_Ln4


title: CecalContents_14dpi_125_RNA_Ln1

description: Library name: CecalContents_14dpi_125_RNA_Ln1


title: CecalContents_14dpi_124_RNA_Ln4

description: Library name: CecalContents_14dpi_124_RNA_Ln4


title: CecalContents_14dpi_124_RNA_Ln1

description: Library name: CecalContents_14dpi_124_RNA_Ln1


title: CecalContents_14dpi_123_RNA_Ln2

description: Library name: CecalContents_14dpi_123_RNA_Ln2


title: CecalContents_14dpi_124_RNA_Ln2

description: Library name: CecalContents_14dpi_124_RNA_Ln2


title: CecalContents_14dpi_123_RNA_Ln3

description: Library name: CecalContents_14dpi_123_RNA_Ln3


title: CecalContents_14dpi_123_RNA_Ln1

description: Library name: CecalContents_14dpi_123_RNA_Ln1


title: CecalContents_14dpi_123_RNA_Ln4

description: Library name: CecalContents_14dpi_123_RNA_Ln4


title: CecalContents_14dpi_122_RNA_Ln3

description: Library name: CecalContents_14dpi_122_RNA_Ln3


title: CecalContents_14dpi_122_RNA_Ln4

description: Library name: CecalContents_14dpi_122_RNA_Ln4


title: CecalContents_14dpi_122_RNA_Ln2

description: Library name: CecalContents_14dpi_122_RNA_Ln2


title: CecalContents_14dpi_122_RNA_Ln1

description: Library name: CecalContents_14dpi_122_RNA_Ln1


title: CecalContents_14dpi_121_RNA_Ln4

description: Library name: CecalContents_14dpi_121_RNA_Ln4


title: CecalContents_14dpi_121_RNA_Ln3

description: Library name: CecalContents_14dpi_121_RNA_Ln3


title: CecalContents_3dpi_084_RNA_Ln3

description: Library name: CecalContents_3dpi_084_RNA_Ln3


title: CecalContents_14dpi_121_RNA_Ln2

description: Library name: CecalContents_14dpi_121_RNA_Ln2


title: CecalContents_3dpi_084_RNA_Ln2

description: Library name: CecalContents_3dpi_084_RNA_Ln2


title: CecalContents_14dpi_121_RNA_Ln1

description: Library name: CecalContents_14dpi_121_RNA_Ln1


title: CecalContents_3dpi_084_RNA_Ln4

description: Library name: CecalContents_3dpi_084_RNA_Ln4


title: CecalContents_3dpi_083_RNA_Ln2

description: Library name: CecalContents_3dpi_083_RNA_Ln2


title: CecalContents_3dpi_082_RNA_Ln4

description: Library name: CecalContents_3dpi_082_RNA_Ln4


title: CecalContents_3dpi_083_RNA_Ln4

description: Library name: CecalContents_3dpi_083_RNA_Ln4


title: CecalContents_3dpi_084_RNA_Ln1

description: Library name: CecalContents_3dpi_084_RNA_Ln1


title: CecalContents_3dpi_083_RNA_Ln3

description: Library name: CecalContents_3dpi_083_RNA_Ln3


title: CecalContents_14dpi_124_RNA_Ln3

description: Library name: CecalContents_14dpi_124_RNA_Ln3


title: CecalContents_3dpi_083_RNA_Ln1

description: Library name: CecalContents_3dpi_083_RNA_Ln1


title: CecalContents_3dpi_082_RNA_Ln3

description: Library name: CecalContents_3dpi_082_RNA_Ln3


title: CecalContents_3dpi_082_RNA_Ln2

description: Library name: CecalContents_3dpi_082_RNA_Ln2


title: CecalContents_3dpi_082_RNA_Ln1

description: Library name: CecalContents_3dpi_082_RNA_Ln1


title: CecalContents_3dpi_081_RNA_Ln4

description: Library name: CecalContents_3dpi_081_RNA_Ln4


title: CecalContents_3dpi_081_RNA_Ln2

description: Library name: CecalContents_3dpi_081_RNA_Ln2


title: CecalContents_3dpi_081_RNA_Ln3

description: Library name: CecalContents_3dpi_081_RNA_Ln3


title: CecalContents_3dpi_080_RNA_Ln4

description: Library name: CecalContents_3dpi_080_RNA_Ln4


title: CecalContents_3dpi_080_RNA_Ln2

description: Library name: CecalContents_3dpi_080_RNA_Ln2


title: CecalContents_3dpi_080_RNA_Ln1

description: Library name: CecalContents_3dpi_080_RNA_Ln1


title: CecalContents_3dpi_080_RNA_Ln3

description: Library name: CecalContents_3dpi_080_RNA_Ln3


title: CecalContents_3dpi_079_RNA_Ln3

description: Library name: CecalContents_3dpi_079_RNA_Ln3


title: CecalContents_3dpi_079_RNA_Ln4

description: Library name: CecalContents_3dpi_079_RNA_Ln4


title: CecalContents_3dpi_079_RNA_Ln1

description: Library name: CecalContents_3dpi_079_RNA_Ln1


title: CecalContents_3dpi_078_RNA_Ln3

description: Library name: CecalContents_3dpi_078_RNA_Ln3


title: CecalContents_3dpi_078_RNA_Ln1

description: Library name: CecalContents_3dpi_078_RNA_Ln1


title: CecalContents_3dpi_078_RNA_Ln4

description: Library name: CecalContents_3dpi_078_RNA_Ln4


title: CecalContents_3dpi_079_RNA_Ln2

description: Library name: CecalContents_3dpi_079_RNA_Ln2


title: CecalContents_3dpi_077_RNA_Ln2

description: Library name: CecalContents_3dpi_077_RNA_Ln2


title: CecalContents_3dpi_077_RNA_Ln4

description: Library name: CecalContents_3dpi_077_RNA_Ln4


title: CecalContents_3dpi_081_RNA_Ln1

description: Library name: CecalContents_3dpi_081_RNA_Ln1


title: CecalContents_3dpi_076_RNA_Ln4

description: Library name: CecalContents_3dpi_076_RNA_Ln4


title: CecalContents_3dpi_077_RNA_Ln1

description: Library name: CecalContents_3dpi_077_RNA_Ln1


title: CecalContents_3dpi_077_RNA_Ln3

description: Library name: CecalContents_3dpi_077_RNA_Ln3


title: CecalContents_3dpi_076_RNA_Ln3

description: Library name: CecalContents_3dpi_076_RNA_Ln3


title: CecalContents_3dpi_076_RNA_Ln1

description: Library name: CecalContents_3dpi_076_RNA_Ln1


title: CecalContents_3dpi_075_RNA_Ln3

description: Library name: CecalContents_3dpi_075_RNA_Ln3


title: CecalContents_3dpi_075_RNA_Ln2

description: Library name: CecalContents_3dpi_075_RNA_Ln2


title: CecalContents_3dpi_076_RNA_Ln2

description: Library name: CecalContents_3dpi_076_RNA_Ln2


title: CecalContents_3dpi_075_RNA_Ln4

description: Library name: CecalContents_3dpi_075_RNA_Ln4


title: CecalContents_3dpi_074_RNA_Ln1

description: Library name: CecalContents_3dpi_074_RNA_Ln1


title: CecalContents_3dpi_074_RNA_Ln3

description: Library name: CecalContents_3dpi_074_RNA_Ln3


title: CecalContents_3dpi_073_RNA_Ln3

description: Library name: CecalContents_3dpi_073_RNA_Ln3


title: CecalContents_3dpi_075_RNA_Ln1

description: Library name: CecalContents_3dpi_075_RNA_Ln1


title: CecalContents_3dpi_074_RNA_Ln4

description: Library name: CecalContents_3dpi_074_RNA_Ln4


title: CecalContents_3dpi_073_RNA_Ln2

description: Library name: CecalContents_3dpi_073_RNA_Ln2


title: CecalContents_3dpi_073_RNA_Ln1

description: Library name: CecalContents_3dpi_073_RNA_Ln1


title: CecalContents_3dpi_078_RNA_Ln2

description: Library name: CecalContents_3dpi_078_RNA_Ln2


title: CecalContents_0dpi_034_RNA_Ln4

description: Library name: CecalContents_0dpi_034_RNA_Ln4


title: CecalContents_3dpi_074_RNA_Ln2

description: Library name: CecalContents_3dpi_074_RNA_Ln2


title: CecalContents_0dpi_033_RNA_Ln2

description: Library name: CecalContents_0dpi_033_RNA_Ln2


title: CecalContents_0dpi_033_RNA_Ln3

description: Library name: CecalContents_0dpi_033_RNA_Ln3


title: CecalContents_0dpi_033_RNA_Ln4

description: Library name: CecalContents_0dpi_033_RNA_Ln4


title: CecalContents_0dpi_034_RNA_Ln3

description: Library name: CecalContents_0dpi_034_RNA_Ln3


title: CecalContents_0dpi_034_RNA_Ln1

description: Library name: CecalContents_0dpi_034_RNA_Ln1


title: CecalContents_0dpi_034_RNA_Ln2

description: Library name: CecalContents_0dpi_034_RNA_Ln2


title: CecalContents_0dpi_032_RNA_Ln2

description: Library name: CecalContents_0dpi_032_RNA_Ln2


title: CecalContents_0dpi_032_RNA_Ln1

description: Library name: CecalContents_0dpi_032_RNA_Ln1


title: CecalContents_0dpi_033_RNA_Ln1

description: Library name: CecalContents_0dpi_033_RNA_Ln1


title: CecalContents_0dpi_031_RNA_Ln2

description: Library name: CecalContents_0dpi_031_RNA_Ln2


title: CecalContents_0dpi_032_RNA_Ln3

description: Library name: CecalContents_0dpi_032_RNA_Ln3


title: CecalContents_0dpi_032_RNA_Ln4

description: Library name: CecalContents_0dpi_032_RNA_Ln4


title: CecalContents_0dpi_031_RNA_Ln3

description: Library name: CecalContents_0dpi_031_RNA_Ln3


title: CecalContents_0dpi_031_RNA_Ln4

description: Library name: CecalContents_0dpi_031_RNA_Ln4


title: CecalContents_0dpi_031_RNA_Ln1

description: Library name: CecalContents_0dpi_031_RNA_Ln1


title: CecalContents_3dpi_073_RNA_Ln4

description: Library name: CecalContents_3dpi_073_RNA_Ln4


title: CecalContents_0dpi_030_RNA_Ln4

description: Library name: CecalContents_0dpi_030_RNA_Ln4


title: CecalContents_0dpi_029_RNA_Ln4

description: Library name: CecalContents_0dpi_029_RNA_Ln4


title: CecalContents_0dpi_030_RNA_Ln2

description: Library name: CecalContents_0dpi_030_RNA_Ln2


title: CecalContents_0dpi_030_RNA_Ln3

description: Library name: CecalContents_0dpi_030_RNA_Ln3


title: CecalContents_0dpi_029_RNA_Ln2

description: Library name: CecalContents_0dpi_029_RNA_Ln2


title: CecalContents_0dpi_028_RNA_Ln3

description: Library name: CecalContents_0dpi_028_RNA_Ln3


title: CecalContents_0dpi_028_RNA_Ln2

description: Library name: CecalContents_0dpi_028_RNA_Ln2


title: CecalContents_0dpi_029_RNA_Ln1

description: Library name: CecalContents_0dpi_029_RNA_Ln1


title: CecalContents_0dpi_028_RNA_Ln4

description: Library name: CecalContents_0dpi_028_RNA_Ln4


title: CecalContents_0dpi_028_RNA_Ln1

description: Library name: CecalContents_0dpi_028_RNA_Ln1


title: CecalContents_0dpi_029_RNA_Ln3

description: Library name: CecalContents_0dpi_029_RNA_Ln3


title: CecalContents_0dpi_027_RNA_Ln1

description: Library name: CecalContents_0dpi_027_RNA_Ln1


title: CecalContents_0dpi_027_RNA_Ln4

description: Library name: CecalContents_0dpi_027_RNA_Ln4


title: CecalContents_0dpi_026_RNA_Ln4

description: Library name: CecalContents_0dpi_026_RNA_Ln4


title: CecalContents_0dpi_027_RNA_Ln2

description: Library name: CecalContents_0dpi_027_RNA_Ln2


title: CecalContents_0dpi_025_RNA_Ln4

description: Library name: CecalContents_0dpi_025_RNA_Ln4


title: CecalContents_0dpi_027_RNA_Ln3

description: Library name: CecalContents_0dpi_027_RNA_Ln3


title: CecalContents_0dpi_025_RNA_Ln3

description: Library name: CecalContents_0dpi_025_RNA_Ln3


title: CecalContents_0dpi_026_RNA_Ln3

description: Library name: CecalContents_0dpi_026_RNA_Ln3


title: CecalContents_0dpi_025_RNA_Ln1

description: Library name: CecalContents_0dpi_025_RNA_Ln1


title: CecalContents_0dpi_025_RNA_Ln2

description: Library name: CecalContents_0dpi_025_RNA_Ln2


title: Consortium_28dpi_192_RNA_Ln4

description: Library name: Consortium_28dpi_192_RNA_Ln4

value: Consortium


title: Consortium_28dpi_192_RNA_Ln2

description: Library name: Consortium_28dpi_192_RNA_Ln2


title: CecalContents_0dpi_030_RNA_Ln1

description: Library name: CecalContents_0dpi_030_RNA_Ln1


title: CecalContents_0dpi_026_RNA_Ln2

description: Library name: CecalContents_0dpi_026_RNA_Ln2


title: Consortium_28dpi_192_RNA_Ln1

description: Library name: Consortium_28dpi_192_RNA_Ln1


title: Consortium_28dpi_191_RNA_Ln4

description: Library name: Consortium_28dpi_191_RNA_Ln4


title: Consortium_28dpi_191_RNA_Ln2

description: Library name: Consortium_28dpi_191_RNA_Ln2


title: Consortium_28dpi_191_RNA_Ln3

description: Library name: Consortium_28dpi_191_RNA_Ln3


title: Consortium_28dpi_190_RNA_Ln3

description: Library name: Consortium_28dpi_190_RNA_Ln3


title: Consortium_28dpi_190_RNA_Ln2

description: Library name: Consortium_28dpi_190_RNA_Ln2


title: Consortium_28dpi_190_RNA_Ln4

description: Library name: Consortium_28dpi_190_RNA_Ln4


title: CecalContents_0dpi_026_RNA_Ln1

description: Library name: CecalContents_0dpi_026_RNA_Ln1


title: Consortium_28dpi_190_RNA_Ln1

description: Library name: Consortium_28dpi_190_RNA_Ln1


title: Consortium_28dpi_189_RNA_Ln4

description: Library name: Consortium_28dpi_189_RNA_Ln4


title: Consortium_28dpi_189_RNA_Ln1

description: Library name: Consortium_28dpi_189_RNA_Ln1


title: Consortium_28dpi_189_RNA_Ln3

description: Library name: Consortium_28dpi_189_RNA_Ln3


title: Consortium_28dpi_188_RNA_Ln4

description: Library name: Consortium_28dpi_188_RNA_Ln4


title: Consortium_28dpi_187_RNA_Ln4

description: Library name: Consortium_28dpi_187_RNA_Ln4


title: Consortium_28dpi_188_RNA_Ln3

description: Library name: Consortium_28dpi_188_RNA_Ln3


title: Consortium_28dpi_187_RNA_Ln3

description: Library name: Consortium_28dpi_187_RNA_Ln3


title: Consortium_28dpi_186_RNA_Ln3

description: Library name: Consortium_28dpi_186_RNA_Ln3


title: Consortium_28dpi_191_RNA_Ln1

description: Library name: Consortium_28dpi_191_RNA_Ln1


title: Consortium_28dpi_188_RNA_Ln1

description: Library name: Consortium_28dpi_188_RNA_Ln1


title: Consortium_28dpi_186_RNA_Ln4

description: Library name: Consortium_28dpi_186_RNA_Ln4


title: Consortium_28dpi_187_RNA_Ln2

description: Library name: Consortium_28dpi_187_RNA_Ln2


title: Consortium_28dpi_192_RNA_Ln3

description: Library name: Consortium_28dpi_192_RNA_Ln3


title: Consortium_28dpi_186_RNA_Ln2

description: Library name: Consortium_28dpi_186_RNA_Ln2


title: Consortium_28dpi_185_RNA_Ln4

description: Library name: Consortium_28dpi_185_RNA_Ln4


title: Consortium_28dpi_186_RNA_Ln1

description: Library name: Consortium_28dpi_186_RNA_Ln1


title: Consortium_28dpi_188_RNA_Ln2

description: Library name: Consortium_28dpi_188_RNA_Ln2


title: Consortium_28dpi_185_RNA_Ln2

description: Library name: Consortium_28dpi_185_RNA_Ln2


title: Consortium_28dpi_185_RNA_Ln3

description: Library name: Consortium_28dpi_185_RNA_Ln3


title: Consortium_28dpi_189_RNA_Ln2

description: Library name: Consortium_28dpi_189_RNA_Ln2


title: Consortium_28dpi_184_RNA_Ln1

description: Library name: Consortium_28dpi_184_RNA_Ln1


title: Consortium_28dpi_184_RNA_Ln2

description: Library name: Consortium_28dpi_184_RNA_Ln2


title: Consortium_28dpi_184_RNA_Ln4

description: Library name: Consortium_28dpi_184_RNA_Ln4


title: Consortium_28dpi_184_RNA_Ln3

description: Library name: Consortium_28dpi_184_RNA_Ln3


title: Consortium_28dpi_185_RNA_Ln1

description: Library name: Consortium_28dpi_185_RNA_Ln1


title: S29_B2

type: RNA

city: Lund

first: Ines

last: Ambite

address: Klinikgatan 28

department: Laboratory Medicine

country: Sweden

institute: Lund University

description: Gene expression data from blood sample of recurrent cystitis treated patient

hyb_protocol: Hybridization was onto Human HT Clariom S arrays (ThermoFisher Scientific), as per manufacturer’s instruction.

scan_protocol: Scanning was in the GeneTitan System, as per manufacturer’s instruction (ThermoFisher Scientific).

data_processing: Transcriptomic data were normalized using the Robust Multi-chip Analysis (RMA) algorithm implemented in the Transcriptome Analysis Console software (TAC v.4.0.1.36, Applied Biosystems, ThermoFisher Scientific).

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: blood, treated patient, recurrent cystitis

label_protocol: 10 ng of total RNA was amplified and fragmented using the GeneChip 3’ IVT Pico labelling kit (ThermoFisher Scientific), as per manufacturer’s instruction.

growth_protocol: For this randomized, open label, single-center, phase 2 trial, patients were enrolled at the Clinic for Urology, Pediatric Urology and Andrology in Giessen, Germany. Female adult patients with an acute episode of recurrent uncomplicated cystitis were included in this study. Enrolment was based on a sum score of the main UTI symptoms at visit 1 ≥ 6 as reported on the Acute Cystitis Symptom Score (ACSS) typical domain.

extract_protocol: RNA was stabilized and purified from peripheral blood using Tempus blood RNA tubes and purification kit (Applied Biosystems).

treatment_protocol: All enrolled subjects were randomized to two study treatment groups at Visit 1, the chance for allocation to the anakinra group or nitrofurantoin group was 2:1. Anakinra was administered by subcutaneous injection of 100 mg once a day for five days, given at around the same time each day. Patients receiving nitrofurantoin (Uro-Tablinen, Zentiva), were instructed to take the drug orally at home on their own twice a day (2 x 100 mg) for five days.

tag: Sex

value: female

value: whole blood

tag: batch


title: S28_B1


title: S29_B3


title: S29_B1


title: Consortium_28dpi_187_RNA_Ln1

description: Library name: Consortium_28dpi_187_RNA_Ln1


title: Consortium_28dpi_183_RNA_Ln3

description: Library name: Consortium_28dpi_183_RNA_Ln3


title: Consortium_28dpi_183_RNA_Ln4

description: Library name: Consortium_28dpi_183_RNA_Ln4


title: Consortium_28dpi_183_RNA_Ln2

description: Library name: Consortium_28dpi_183_RNA_Ln2


title: Consortium_28dpi_182_RNA_Ln4

description: Library name: Consortium_28dpi_182_RNA_Ln4


title: S26_B3


title: Consortium_28dpi_182_RNA_Ln3

description: Library name: Consortium_28dpi_182_RNA_Ln3


title: S27_B1


title: S26_B1


title: S26_B2


title: Consortium_28dpi_182_RNA_Ln1

description: Library name: Consortium_28dpi_182_RNA_Ln1


title: S27_B2


title: S25_B3


title: Consortium_28dpi_181_RNA_Ln3

description: Library name: Consortium_28dpi_181_RNA_Ln3


title: S25_B1


title: S27_B3


title: S28_B2


title: S24_B3


title: Consortium_28dpi_183_RNA_Ln1

description: Library name: Consortium_28dpi_183_RNA_Ln1


title: Consortium_28dpi_181_RNA_Ln4

description: Library name: Consortium_28dpi_181_RNA_Ln4


title: S24_B2


title: Consortium_14dpi_144_RNA_Ln4

description: Library name: Consortium_14dpi_144_RNA_Ln4


title: Consortium_28dpi_182_RNA_Ln2

description: Library name: Consortium_28dpi_182_RNA_Ln2


title: Consortium_14dpi_144_RNA_Ln2

description: Library name: Consortium_14dpi_144_RNA_Ln2


title: Consortium_28dpi_181_RNA_Ln2

description: Library name: Consortium_28dpi_181_RNA_Ln2


title: S23_B2


title: Consortium_28dpi_181_RNA_Ln1

description: Library name: Consortium_28dpi_181_RNA_Ln1


title: S24_B1


title: S22_B3


title: S25_B2


title: S23_B1


title: Consortium_14dpi_144_RNA_Ln1

description: Library name: Consortium_14dpi_144_RNA_Ln1


title: Consortium_14dpi_144_RNA_Ln3

description: Library name: Consortium_14dpi_144_RNA_Ln3


title: Consortium_14dpi_143_RNA_Ln3

description: Library name: Consortium_14dpi_143_RNA_Ln3


title: S22_B1

description: Gene expression data from blood sample of recurrent cystitis treated patient


title: Consortium_14dpi_143_RNA_Ln2

description: Library name: Consortium_14dpi_143_RNA_Ln2


title: Consortium_14dpi_142_RNA_Ln4

description: Library name: Consortium_14dpi_142_RNA_Ln4


title: S21_B2


title: Consortium_14dpi_142_RNA_Ln2

description: Library name: Consortium_14dpi_142_RNA_Ln2


title: S21_B1


title: S21_B3


title: Consortium_14dpi_142_RNA_Ln3

description: Library name: Consortium_14dpi_142_RNA_Ln3


title: Consortium_14dpi_142_RNA_Ln1

description: Library name: Consortium_14dpi_142_RNA_Ln1


title: Consortium_14dpi_143_RNA_Ln1

description: Library name: Consortium_14dpi_143_RNA_Ln1


title: S20_B3


title: S22_B2


title: Consortium_14dpi_143_RNA_Ln4

description: Library name: Consortium_14dpi_143_RNA_Ln4


title: Consortium_14dpi_141_RNA_Ln3

description: Library name: Consortium_14dpi_141_RNA_Ln3


title: S19_B2


title: S20_B2


title: S19_B3


title: Consortium_14dpi_141_RNA_Ln1

description: Library name: Consortium_14dpi_141_RNA_Ln1


title: S20_B1


title: S18_B2


title: Consortium_14dpi_140_RNA_Ln4

description: Library name: Consortium_14dpi_140_RNA_Ln4


title: Consortium_14dpi_140_RNA_Ln3

description: Library name: Consortium_14dpi_140_RNA_Ln3


title: S19_B1


title: S18_B1


title: S17_B3


title: S17_B1


title: Consortium_14dpi_140_RNA_Ln1

description: Library name: Consortium_14dpi_140_RNA_Ln1


title: Consortium_14dpi_141_RNA_Ln2

description: Library name: Consortium_14dpi_141_RNA_Ln2


title: Consortium_14dpi_141_RNA_Ln4

description: Library name: Consortium_14dpi_141_RNA_Ln4


title: S17_B2


title: Consortium_14dpi_139_RNA_Ln4

description: Library name: Consortium_14dpi_139_RNA_Ln4


title: S16_B2


title: Consortium_14dpi_139_RNA_Ln3

description: Library name: Consortium_14dpi_139_RNA_Ln3


title: Consortium_14dpi_139_RNA_Ln2

description: Library name: Consortium_14dpi_139_RNA_Ln2


title: S18_B3

description: Gene expression data from blood sample of recurrent cystitis treated patient


title: Consortium_14dpi_138_RNA_Ln4

description: Library name: Consortium_14dpi_138_RNA_Ln4


title: Consortium_14dpi_138_RNA_Ln3

description: Library name: Consortium_14dpi_138_RNA_Ln3


title: S16_B3


title: S16_B1


title: Consortium_14dpi_140_RNA_Ln2

description: Library name: Consortium_14dpi_140_RNA_Ln2


title: S15_B2


title: S15_B3


title: Consortium_14dpi_138_RNA_Ln2

description: Library name: Consortium_14dpi_138_RNA_Ln2


title: S14_B2


title: S14_B3


title: S15_B1


title: Consortium_14dpi_138_RNA_Ln1

description: Library name: Consortium_14dpi_138_RNA_Ln1


title: Consortium_14dpi_137_RNA_Ln4

description: Library name: Consortium_14dpi_137_RNA_Ln4


title: Consortium_14dpi_137_RNA_Ln3

description: Library name: Consortium_14dpi_137_RNA_Ln3


title: Consortium_14dpi_139_RNA_Ln1

description: Library name: Consortium_14dpi_139_RNA_Ln1


title: Consortium_14dpi_137_RNA_Ln2

description: Library name: Consortium_14dpi_137_RNA_Ln2


title: S14_B1


title: Consortium_14dpi_137_RNA_Ln1

description: Library name: Consortium_14dpi_137_RNA_Ln1


title: S13_B2


title: S13_B3


title: Consortium_14dpi_136_RNA_Ln2

description: Library name: Consortium_14dpi_136_RNA_Ln2


title: S12_B2


title: Consortium_14dpi_136_RNA_Ln4

description: Library name: Consortium_14dpi_136_RNA_Ln4


title: Consortium_14dpi_136_RNA_Ln3

description: Library name: Consortium_14dpi_136_RNA_Ln3


title: S13_B1


title: Consortium_14dpi_135_RNA_Ln3

description: Library name: Consortium_14dpi_135_RNA_Ln3


title: S10_B2


title: S12_B1


title: S11_B3


title: S09_B2


title: S11_B2


title: S09_B3


title: S08_B3


title: Consortium_14dpi_135_RNA_Ln4

description: Library name: Consortium_14dpi_135_RNA_Ln4


title: Consortium_14dpi_134_RNA_Ln2

description: Library name: Consortium_14dpi_134_RNA_Ln2


title: Consortium_14dpi_136_RNA_Ln1

description: Library name: Consortium_14dpi_136_RNA_Ln1


title: Consortium_14dpi_134_RNA_Ln4

description: Library name: Consortium_14dpi_134_RNA_Ln4


title: Consortium_14dpi_134_RNA_Ln1

description: Library name: Consortium_14dpi_134_RNA_Ln1


title: S10_B1

description: Gene expression data from blood sample of recurrent cystitis treated patient


title: Consortium_14dpi_133_RNA_Ln1

description: Library name: Consortium_14dpi_133_RNA_Ln1


title: S12_B3


title: S08_B1


title: Consortium_3dpi_096_RNA_Ln4

description: Library name: Consortium_3dpi_096_RNA_Ln4


title: S07_B3


title: S07_B2


title: Consortium_14dpi_135_RNA_Ln2

description: Library name: Consortium_14dpi_135_RNA_Ln2


title: Consortium_14dpi_134_RNA_Ln3

description: Library name: Consortium_14dpi_134_RNA_Ln3


title: Consortium_14dpi_135_RNA_Ln1

description: Library name: Consortium_14dpi_135_RNA_Ln1


title: S07_B1


title: S06_B3


title: S09_B1


title: Consortium_14dpi_133_RNA_Ln4

description: Library name: Consortium_14dpi_133_RNA_Ln4


title: Consortium_14dpi_133_RNA_Ln2

description: Library name: Consortium_14dpi_133_RNA_Ln2


title: S08_B2


title: Consortium_3dpi_096_RNA_Ln2

description: Library name: Consortium_3dpi_096_RNA_Ln2


title: S11_B1


title: Consortium_3dpi_096_RNA_Ln1

description: Library name: Consortium_3dpi_096_RNA_Ln1


title: S05_B3


title: Consortium_3dpi_095_RNA_Ln3

description: Library name: Consortium_3dpi_095_RNA_Ln3


title: S05_B2


title: Consortium_3dpi_096_RNA_Ln3

description: Library name: Consortium_3dpi_096_RNA_Ln3


title: Consortium_3dpi_095_RNA_Ln2

description: Library name: Consortium_3dpi_095_RNA_Ln2


title: Consortium_3dpi_095_RNA_Ln4

description: Library name: Consortium_3dpi_095_RNA_Ln4


title: Consortium_3dpi_094_RNA_Ln3

description: Library name: Consortium_3dpi_094_RNA_Ln3


title: Consortium_3dpi_095_RNA_Ln1

description: Library name: Consortium_3dpi_095_RNA_Ln1


title: Consortium_3dpi_094_RNA_Ln2

description: Library name: Consortium_3dpi_094_RNA_Ln2


title: S04_B1

description: Gene expression data from blood sample of recurrent cystitis treated patient


title: S04_B2


title: Consortium_3dpi_094_RNA_Ln1

description: Library name: Consortium_3dpi_094_RNA_Ln1


title: S05_B1


title: Consortium_3dpi_094_RNA_Ln4

description: Library name: Consortium_3dpi_094_RNA_Ln4


title: S04_B3


title: S03_B3


title: Consortium_3dpi_093_RNA_Ln3

description: Library name: Consortium_3dpi_093_RNA_Ln3


title: S06_B1


title: S03_B1


title: S02_B3


title: S06_B2


title: S03_B2


title: Consortium_3dpi_093_RNA_Ln1

description: Library name: Consortium_3dpi_093_RNA_Ln1


title: X2/72/L/5

city: Erfurt

first: Sindy

last: Chamas

address: Kuehnhaeuser Strasse 101

country: Germany

institute: Erfurt Research Centre for Horticultural Crops, University of Applied Sciences Erfurt

description: Gene expression 72 hours post excision

hyb_protocol: Microarray design and hybridization was performed by the company Oaklabs GmBH. Based on the genome sequences of 1,265 genes of interest (605 from P. axillaris and 660 from P. 152 inflata), an Array-to-Go Custom microarray was designed. For this purpose, five to ten specific isothermal probes, each 45-60 bp in 154 length were designed for each gene of interest. An additional 1,000 probes from a previously used microarray (Yang et al. 2019, Annals of Botany 124: 1053–1066) were used for normalization.

scan_protocol: Scanning was performed by the company Oaklabs GmbH using etablished protocols.

data_processing:
Raw data were analysed and processed by the company Oaklabs GmbH using etablished protocols.The best-performing oligonucleotide probe(s) were selected for each gene based on the hybridization data and used for the subsequent data analysis.
Quantil normalization of the oligonucleotide probes for the genes of interest was performed by the company Oaklabs.

organism: Petunia axillaris

source_name: P. axillaris, replicate 2, 72 hpe, light, stem base

label_protocol: Quality control by use of Bioanalyzer & Nanodrop photometer and labeling of total RNA samples, that contained at least 5 µl total RNA at 50 ng/µl, with cy3 fluorescent dye was performed by the company OakLabs GmbH, Neuendorfstraße 16B, 16761 Hennigsdorf.

growth_protocol: For establishment of donor plants, seeds of P. axillaris N and P. inflata S6 were surface sterilized and thereafter germinated in Petri-dishes on ½ MS medium (Murashige and Skoog, 1962) at 24 °C and a 16 h photoperiod. After 12 days, seedlings were transplanted into peat-based substrate (Einheitserde Typ CL Pikier, Patzer, Sinntal-Jossa, Germany) in plastic trays and placed in the greenhouse. Plants were watered with tap water and repeatedly fertilized with Hakaphos soft spezial (16% N, 8% P2O5, 22% K2O, 3% MgO + micronutrients, COMPO EXPERT GmbH, Münster, Germany) aiming at the following concentrations of nutrients in the substrate: nitrate-N: 150 mgL-1, P: 100 mgL-1 and K: 100 mgL-1. Plants were shaded or received supplemental light from high-pressure sodium vapor lamps, when natural irradiance exceeded a PPFD (photosynthetic photon flux density) of 720 μmol m−2 s−1 (400–700nm) or fell below a PPFD of 144 μmol m−2 s−1 (400–700nm), respectively, while day length was restricted to 10 h with a black fabric. Heating/ventilation set points for temperatures were 18/20 °C (day) and 16/18°C (night). After four weeks, the small petunia plants were placed in pots (final volume 1.7 L) containing the peat substrate indicated above. After eight weeks, plants were pinched to remaining three leaves. Starting in week 12 after sowing, shoot tip cuttings that consisted of the terminal shoot with six leaves, of which two were fully developed, were excised at regular intervals and used for the experiments, always leaving two leaves/nodes at the stock plant.

extract_protocol: Total RNA was extracted from the sample of the petunia cuttings following the protocol of the RNeasy Plant Mini Kit (Qiagen, Hilden, Germany). A maximum of 100 mg fresh mass was processed in regard to the lysis capacity of the RLT buffer and RNeasy spin columns. After following the manufacturer's protocol, 30 µl of total RNA was obtained. The total RNA concentration and quality were determined on a NanoDrop™ 2000/2000c spectral photometer (Thermo Fisher Scientific, Schwerte, Germany). Only high-quality RNA samples (OD260/280 = 1.8 - 2.2, OD260/230 ≥ 2) were used. The integrity of RNA used for the microarray was additionally checked by the Agilent 2100 bioanalyzer (Agilent Technologies Deutschland GmbH, Waldbronn, Germany).

treatment_protocol: Cuttings were planted in perlite Perligran A (Knauf Perlite GmbH, Dortmund, Germany) and cultivated in a growth chamber at following conditions: temperature: 22/20 °C (day/night), humidity outside the covered trays: 85/60% (day/night), PPFD 100 μmol m−2 s−1 at plant level during a 10 h photoperiod provided by white fluorescent tubes. At specified hours after excision (hpe) of the cuttings, their stem bases, the upper stem, longitudinal halves of the two basal leaves and the remaining upper leaves and the shoot apex including the smallest adjacent leaves were shock-frozen in liquid N and stored at –80 °C. Per each replicate (n=3), pooled material from 10 or 16 cuttings was ground manually in liquid nitrogen by using a mortar and pistil and aliquots of 100 mg fresh mass were used for extraction.

tag: hours post excision (hpe)

tag: condition

value: light

value: stem base


title: Consortium_3dpi_093_RNA_Ln2

description: Library name: Consortium_3dpi_093_RNA_Ln2


title: S02_B2


title: Isogenic control hiPSC-EHT 3

city: Hamburg

first: Sonia

last: Singh

address: Martinistr. 52

institute: University Medical Center Hamburg-Eppendorf

description:
Library name: Sample 6
Lotte_R3

data_processing:
bcl2fastq2
Assembly: Ensembl GRCh38 reference genome
Supplementary files format and content: Excel with baseMean, log2FC, pvalue and padjust

source_name: hiPSC-derived engineered heart tissue

extract_protocol:
RNA was extracted with TRIzol reagent and 150 ng were purified with NEBNext rRNA Depletion kit
RNA sequencing library was constructed with NEBNext Ultra II Directional RNA Library Prep kit for Illumina

value: hiPSC-derived engineered heart tissue

value: Cardiomyocyte

tag: genotype

value: WT


title: S01_B1


title: F2/72/L/5

description: Gene expression 72 hours post excision

organism: Petunia integrifolia subsp. inflata

source_name: P. inflata, replicate 2, 72 hpe, light, stem base


title: Consortium_3dpi_093_RNA_Ln4

description: Library name: Consortium_3dpi_093_RNA_Ln4

value: cecal tissue

value: epithelial


title: F3/72/L/5

description: Gene expression 72 hours post excision

source_name: P. inflata, replicate 3, 72 hpe, light, stem base


title: Isogenic control hiPSC-EHT 1

description:
Library name: Sample 4
Lotte_R1


title: H222P hiPSC-EHT 2

description:
Library name: Sample 2
Lotte_H2

value: LMNA H222P


title: Consortium_3dpi_092_RNA_Ln4

description: Library name: Consortium_3dpi_092_RNA_Ln4

value: Positive


title: S02_B1


title: Consortium_3dpi_092_RNA_Ln3

description: Library name: Consortium_3dpi_092_RNA_Ln3


title: siNT_2

city: Chicago

first: SHASHANK

last: SRIVASTAVA

state: IL

address: 303 E Superior St, SQE Lab 7-400

institute: Northwestern University

description: Library name: Control_Rep2

library_source: genomic

data_processing:
Basecalls performed using Illumina RTA2 software.
Indexed samples were demultiplexed to fastq files with bcl-convert v3.10.5.
Reads were  trimmed of 10 base pairs from the 5’ end with TrimGalore! v0.4.4 to remove primer and adapter sequences.
Sequence alignment to the hg38 reference genome and methylation extraction ignoring 1 base at the 3’ end were performed with Bismark v0.16.3.
Assembly: hg38
Supplementary files format and content: Bismark tab-delimited "coverage" files for cytosines in CpG context with the following columns: <chromosome> <start position> <end position> <methylation percentage> <count methylated> <count unmethylated>

molecule: genomic DNA

growth_protocol: DMEM/F-12, 10% fetal bovine serum, 1% penicillin/streptomycin, 5% CO2, 37°C

extract_protocol:
Genomic DNA was extracted from flow cytometry-sorted cells using the AllPrep DNA/RNA Micro Kit.
Genomic DNA was quantified with a Qubit 3.0 instrument. Genomic DNA was then digested with the restriction endonuclease MspI (New England BioLabs). Resulting fragments underwent size selection for fragments ~100-250-bp in length using SPRI beads (MagBio Genomics) and subsequent bisulfite conversion using the EZ DNA Methylation-Lightning Kit (Zymo Research) per the manufacturer’s protocol.  Libraries for Illumina-based sequencing were prepared with the Pico Methyl-Seq Library Prep Kit (Zymo Research). Libraries were run on a High Sensitivity chip using an Agilent TapeStation 4200 to assess size distribution and overall quality of the amplified library. Fluorometric quantitation and TapeStation size distribution estimates permitted equimolar pooling, and six pooled libraries per run were sequenced on an Illumina NextSeq 2000 instrument.

tag: cell line

value: Epithelial


title: Consortium_3dpi_092_RNA_Ln1

description: Library name: Consortium_3dpi_092_RNA_Ln1

value: 10 days


title: F1/72/L/5

description: Gene expression 72 hours post excision

source_name: P. inflata, replicate 1, 72 hpe, light, stem base


title: S01_B2


title: X1/72/L/5

description: Gene expression 72 hours post excision

source_name: P. axillaris, replicate 1, 72 hpe, light, stem base


title: H222P hiPSC-EHT 1

description:
Library name: Sample 1
Lotte_H1


title: siNT_1

description: Library name: Control_Rep1


title: F2/24/L/4

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 2, 24 hpe, light, upper shoot

value: upper shoot


title: Isogenic control hiPSC-EHT 2

description:
Library name: Sample 5
Lotte_R2


title: Nasopharyngeal sample – TN_538_534

city: Santiago

first: mario

middle: Alberto

last: maulen

state: Región Metropolitana

address: Amunategui 425, depto 31

department: Facultad de Ingenieria

country: Chile

institute: Universidad San Sebastian

description:
Library name: TN_538_534
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

data_processing:
Raw FASTQ files were demultiplexed using MetaScope v4.1.
Reads were processed with DADA2 (R v4.1.2) for quality filtering, dereplication, denoising, paired-end merging, and chimera removal.
Amplicon sequence variants (ASVs) were inferred using DADA2 default error-modeling parameters.
Taxonomic assignment of ASVs was performed with the SILVA v138 database.
ASV table, taxonomic annotations, and sample metadata were integrated into a phyloseq object (phyloseq R package) for downstream analysis.
Assembly: Not applicable (amplicon sequencing of bacterial 16S rRNA gene; no genome build used).
Supplementary files format and content: Processed data files consist of a tab-delimited ASV abundance matrix, a taxonomy annotation table, sample metadata, and a FASTA file containing ASV sequences. These files represent the fully processed outputs of the DADA2 pipeline and the final dataset used for microbial community and downstream statistical analyses. All files are provided in open, text-based formats.
Library strategy: 16S rRNA-seq

organism: human metagenome

source_name: nasopharyngeal swab

extract_protocol:
Total nucleic acids were extracted from nasopharyngeal swab samples using the Mag-Bind® Viral DNA/RNA 96 Kit (Omega Bio-Tek) following the manufacturer’s protocol. Samples were stored at −80 °C prior to extraction.
The V3–V4 hypervariable region of the bacterial 16S rRNA gene was amplified using primers 515F (5′-GTGCCAGCMGCCGCGGTAA-3′) and 806R (5′-GGACTACHVGGGTWTCTAAT-3′). Amplicons were prepared for sequencing using Illumina MiSeq library construction workflows by the Environmental Sample Preparation and Sequencing Facility (Argonne National Laboratory). Sequencing was performed using Illumina MiSeq paired-end chemistry.

value: nasopharyngeal swab


title: Nasopharyngeal sample – TN_539_535

description:
Library name: TN_539_535
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_091_RNA_Ln3

description: Library name: Consortium_3dpi_091_RNA_Ln3


title: Nasopharyngeal sample – TN_537_533

description:
Library name: TN_537_533
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_092_RNA_Ln2

description: Library name: Consortium_3dpi_092_RNA_Ln2


title: Consortium_3dpi_091_RNA_Ln4

description: Library name: Consortium_3dpi_091_RNA_Ln4


title: Nasopharyngeal sample – TN_536_531

description:
Library name: TN_536_531
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/72/L/5

description: Gene expression 72 hours post excision

source_name: P. axillaris, replicate 3, 72 hpe, light, stem base


title: X1/24/L/4

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 1, 24 hpe, light, upper shoot


title: Consortium_3dpi_091_RNA_Ln2

description: Library name: Consortium_3dpi_091_RNA_Ln2


title: Nasopharyngeal sample – TN_531_525

description:
Library name: TN_531_525
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_091_RNA_Ln1

description: Library name: Consortium_3dpi_091_RNA_Ln1


title: F2/24/L/2

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 2, 24 hpe, light, upper leaves

value: upper leaves


title: X1/24/L/5

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 1, 24 hpe, light, stem base


title: Nasopharyngeal sample – TN_524_517

description:
Library name: TN_524_517
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_520_512

description:
Library name: TN_520_512
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_090_RNA_Ln4

description: Library name: Consortium_3dpi_090_RNA_Ln4

value: Consortium


title: Nasopharyngeal sample – TN_522_514

description:
Library name: TN_522_514
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X1/24/L/2

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 1, 24 hpe, light, upper leaves


title: Nasopharyngeal sample – TN_523_515

description:
Library name: TN_523_515
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_519_511

description:
Library name: TN_519_511
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_521_513

description:
Library name: TN_521_513
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_090_RNA_Ln2

description: Library name: Consortium_3dpi_090_RNA_Ln2


title: X3/24/L/4

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 3, 24 hpe, light, upper shoot


title: Consortium_3dpi_090_RNA_Ln3

description: Library name: Consortium_3dpi_090_RNA_Ln3


title: Nasopharyngeal sample – TN_517_509

description:
Library name: TN_517_509
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_516_508

description:
Library name: TN_516_508
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_515_507

description:
Library name: TN_515_507
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_514_506

description:
Library name: TN_514_506
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_089_RNA_Ln4

description: Library name: Consortium_3dpi_089_RNA_Ln4


title: F3/24/L/5

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 3, 24 hpe, light, stem base


title: Nasopharyngeal sample – TN_512_504

description:
Library name: TN_512_504
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_513_505

description:
Library name: TN_513_505
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/24/L/5

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 1, 24 hpe, light, stem base


title: Consortium_3dpi_090_RNA_Ln1

description: Library name: Consortium_3dpi_090_RNA_Ln1


title: Nasopharyngeal sample – TN_518_510

description:
Library name: TN_518_510
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_089_RNA_Ln3

description: Library name: Consortium_3dpi_089_RNA_Ln3


title: Nasopharyngeal sample – TN_510_500

description:
Library name: TN_510_500
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_505_494

description:
Library name: TN_505_494
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_506_495

description:
Library name: TN_506_495
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/24/L/2

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 3, 24 hpe, light, upper leaves


title: Nasopharyngeal sample – TN_511_501

description:
Library name: TN_511_501
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F2/24/L/3

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 2, 24 hpe, light, shoot apex

value: shoot apex


title: F1/24/L/2

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 1, 24 hpe, light, upper leaves


title: F2/24/L/5

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 2, 24 hpe, light, stem base


title: Consortium_3dpi_089_RNA_Ln2

description: Library name: Consortium_3dpi_089_RNA_Ln2


title: Consortium_3dpi_089_RNA_Ln1

description: Library name: Consortium_3dpi_089_RNA_Ln1


title: Nasopharyngeal sample – TN_504_493

description:
Library name: TN_504_493
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_088_RNA_Ln4

description: Library name: Consortium_3dpi_088_RNA_Ln4


title: Nasopharyngeal sample – TN_502_490

description:
Library name: TN_502_490
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/24/L/1

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 3, 24 hpe, light, basal leaves

value: basal leaves


title: H222P hiPSC-EHT 3

description:
Library name: Sample 3
Lotte_H3

source_name: hiPSC-derived engineered heart tissue


title: F2/24/L/1

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 2, 24 hpe, light, basal leaves

value: light


title: Nasopharyngeal sample – TN_503_491

description:
Library name: TN_503_491
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X2/24/L/1

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 2, 24 hpe, light, basal leaves


title: Nasopharyngeal sample – TN_500_488

description:
Library name: TN_500_488
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

source_name: nasopharyngeal swab


title: Consortium_3dpi_088_RNA_Ln2

description: Library name: Consortium_3dpi_088_RNA_Ln2


title: Nasopharyngeal sample – TN_501_489

description:
Library name: TN_501_489
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_088_RNA_Ln3

description: Library name: Consortium_3dpi_088_RNA_Ln3


title: Nasopharyngeal sample – TN_499_487

description:
Library name: TN_499_487
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F3/24/L/1

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 3, 24 hpe, light, basal leaves


title: Nasopharyngeal sample – TN_540_536

description:
Library name: TN_540_536
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_497_484

description:
Library name: TN_497_484
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_498_486

description:
Library name: TN_498_486
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/24/L/1

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 1, 24 hpe, light, basal leaves


title: Nasopharyngeal sample – TN_494_480

description:
Library name: TN_494_480
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_493_479

description:
Library name: TN_493_479
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_495_481

description:
Library name: TN_495_481
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X1/24/L/3

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 1, 24 hpe, light, shoot apex


title: Consortium_3dpi_088_RNA_Ln1

description: Library name: Consortium_3dpi_088_RNA_Ln1


title: Consortium_3dpi_087_RNA_Ln3

description: Library name: Consortium_3dpi_087_RNA_Ln3


title: Nasopharyngeal sample – TN_496_483

description:
Library name: TN_496_483
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_14dpi_133_RNA_Ln3

description: Library name: Consortium_14dpi_133_RNA_Ln3

value: 21 days


title: Nasopharyngeal sample – TN_492_478

description:
Library name: TN_492_478
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_087_RNA_Ln1

description: Library name: Consortium_3dpi_087_RNA_Ln1


title: X2/24/L/3

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 2, 24 hpe, light, shoot apex


title: Nasopharyngeal sample – TN_491_477

description:
Library name: TN_491_477
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_087_RNA_Ln2

description: Library name: Consortium_3dpi_087_RNA_Ln2


title: Nasopharyngeal sample – TN_490_476

description:
Library name: TN_490_476
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_488_474

description:
Library name: TN_488_474
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/24/L/3

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 3, 24 hpe, light, shoot apex


title: Nasopharyngeal sample – TN_489_475

description:
Library name: TN_489_475
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_086_RNA_Ln2

description: Library name: Consortium_3dpi_086_RNA_Ln2


title: Nasopharyngeal sample – TN_486_472

description:
Library name: TN_486_472
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_487_473

description:
Library name: TN_487_473
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X2/24/L/2

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 2, 24 hpe, light, upper leaves


title: Nasopharyngeal sample – TN_480_466

description:
Library name: TN_480_466
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_086_RNA_Ln4

description: Library name: Consortium_3dpi_086_RNA_Ln4


title: Nasopharyngeal sample – TN_481_467

description:
Library name: TN_481_467
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_085_RNA_Ln4

description: Library name: Consortium_3dpi_085_RNA_Ln4


title: Nasopharyngeal sample – TN_485_471

description:
Library name: TN_485_471
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_086_RNA_Ln3

description: Library name: Consortium_3dpi_086_RNA_Ln3


title: Nasopharyngeal sample – TN_484_470

description:
Library name: TN_484_470
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F3/24/L/2

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 3, 24 hpe, light, upper leaves


title: Nasopharyngeal sample – TN_475_461

description:
Library name: TN_475_461
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_478_464

description:
Library name: TN_478_464
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_476_462

description:
Library name: TN_476_462
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F3/24/L/3

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 3, 24 hpe, light, shoot apex


title: Nasopharyngeal sample – TN_482_468

description:
Library name: TN_482_468
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_086_RNA_Ln1

description: Library name: Consortium_3dpi_086_RNA_Ln1


title: Nasopharyngeal sample – TN_472_456

description:
Library name: TN_472_456
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_473_457

description:
Library name: TN_473_457
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_483_469

description:
Library name: TN_483_469
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_085_RNA_Ln3

description: Library name: Consortium_3dpi_085_RNA_Ln3


title: Nasopharyngeal sample – TN_477_463

description:
Library name: TN_477_463
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/24/L/4

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 1, 24 hpe, light, upper shoot


title: Nasopharyngeal sample – TN_479_465

description:
Library name: TN_479_465
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_085_RNA_Ln1

description: Library name: Consortium_3dpi_085_RNA_Ln1


title: X1/24/L/1

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 1, 24 hpe, light, basal leaves


title: Nasopharyngeal sample – TN_471_454

description:
Library name: TN_471_454
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_085_RNA_Ln2

description: Library name: Consortium_3dpi_085_RNA_Ln2


title: X3/24/L/5

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 3, 24 hpe, light, stem base

value: stem base


title: Nasopharyngeal sample – TN_470_453

description:
Library name: TN_470_453
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_469_451

description:
Library name: TN_469_451
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_474_459

description:
Library name: TN_474_459
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_046_RNA_Ln3

description: Library name: Consortium_0dpi_046_RNA_Ln3

value: 7 days


title: F1/24/L/3

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 1, 24 hpe, light, shoot apex


title: X2/24/L/5

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 2, 24 hpe, light, stem base


title: F2/2/L/5

description: Gene expression 2 hours post excision

source_name: P. inflata, replicate 2, 2 hpe, light, stem base


title: Consortium_0dpi_046_RNA_Ln2

description: Library name: Consortium_0dpi_046_RNA_Ln2


title: Nasopharyngeal sample – TN_466_448

description:
Library name: TN_466_448
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_467_449

description:
Library name: TN_467_449
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_3dpi_087_RNA_Ln4

description: Library name: Consortium_3dpi_087_RNA_Ln4


title: X2/24/L/4

description: Gene expression 24 hours post excision

source_name: P. axillaris, replicate 2, 24 hpe, light, upper shoot


title: Consortium_0dpi_046_RNA_Ln4

description: Library name: Consortium_0dpi_046_RNA_Ln4


title: F3/24/L/4

description: Gene expression 24 hours post excision

source_name: P. inflata, replicate 3, 24 hpe, light, upper shoot


title: Nasopharyngeal sample – TN_464_446

description:
Library name: TN_464_446
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

source_name: nasopharyngeal swab


title: Consortium_0dpi_046_RNA_Ln1

description: Library name: Consortium_0dpi_046_RNA_Ln1


title: Nasopharyngeal sample – TN_462_440

description:
Library name: TN_462_440
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_460_438

description:
Library name: TN_460_438
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_045_RNA_Ln4

description: Library name: Consortium_0dpi_045_RNA_Ln4


title: X2/2/L/5

description: Gene expression 2 hours post excision

source_name: P. axillaris, replicate 2, 2 hpe, light, stem base


title: Consortium_0dpi_045_RNA_Ln3

description: Library name: Consortium_0dpi_045_RNA_Ln3


title: X3/2/L/5

description: Gene expression 2 hours post excision

source_name: P. axillaris, replicate 3, 2 hpe, light, stem base


title: Nasopharyngeal sample – TN_459_437

description:
Library name: TN_459_437
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_468_450

description:
Library name: TN_468_450
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/2/L/5

description: Gene expression 2 hours post excision

source_name: P. inflata, replicate 1, 2 hpe, light, stem base


title: Nasopharyngeal sample – TN_463_441

description:
Library name: TN_463_441
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_458_436

description:
Library name: TN_458_436
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_045_RNA_Ln2

description: Library name: Consortium_0dpi_045_RNA_Ln2


title: Consortium_0dpi_045_RNA_Ln1

description: Library name: Consortium_0dpi_045_RNA_Ln1


title: Nasopharyngeal sample – TN_455_430

description:
Library name: TN_455_430
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X1/2/L/5

description: Gene expression 2 hours post excision

source_name: P. axillaris, replicate 1, 2 hpe, light, stem base


title: F1/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. inflata, replicate 1, 0.5 hpe, stem base


title: Nasopharyngeal sample – TN_465_447

description:
Library name: TN_465_447
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_044_RNA_Ln3

description: Library name: Consortium_0dpi_044_RNA_Ln3


title: F3/2/L/5

description: Gene expression 2 hours post excision

source_name: P. inflata, replicate 3, 2 hpe, light, stem base


title: Nasopharyngeal sample – TN_450_420

description:
Library name: TN_450_420
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F2/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. inflata, replicate 2, 0.5 hpe, stem base


title: Consortium_0dpi_044_RNA_Ln2

description: Library name: Consortium_0dpi_044_RNA_Ln2


title: F3/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. inflata, replicate 3, 0.5 hpe, stem base


title: Nasopharyngeal sample – TN_456_434

description:
Library name: TN_456_434
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_457_435

description:
Library name: TN_457_435
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_446_416

description:
Library name: TN_446_416
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_461_439

description:
Library name: TN_461_439
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_044_RNA_Ln1

description: Library name: Consortium_0dpi_044_RNA_Ln1


title: Nasopharyngeal sample – TN_449_419

description:
Library name: TN_449_419
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_448_418

description:
Library name: TN_448_418
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_447_417

description:
Library name: TN_447_417
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_453_428

description:
Library name: TN_453_428
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X2/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. axillaris, replicate 2, 0.5 hpe, light, stem base


title: Nasopharyngeal sample – TN_451_425

description:
Library name: TN_451_425
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X1/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. axillaris, replicate 1, 0.5 hpe, light, stem base


title: Consortium_0dpi_044_RNA_Ln4

description: Library name: Consortium_0dpi_044_RNA_Ln4


title: Consortium_0dpi_043_RNA_Ln4

description: Library name: Consortium_0dpi_043_RNA_Ln4


title: Nasopharyngeal sample – TN_452_427

description:
Library name: TN_452_427
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/0.5/L/5

description: gene expression 0.5 hours post excision

source_name: P. axillaris, replicate 3, 0.5 hpe, light, stem base


title: Nasopharyngeal sample – TN_439_405

description:
Library name: TN_439_405
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_043_RNA_Ln2

description: Library name: Consortium_0dpi_043_RNA_Ln2


title: Nasopharyngeal sample – TN_438_404

description:
Library name: TN_438_404
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_441_408

description:
Library name: TN_441_408
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_043_RNA_Ln3

description: Library name: Consortium_0dpi_043_RNA_Ln3


title: siNT_3

description: Library name: Control_Rep3


title: Nasopharyngeal sample – TN_440_406

description:
Library name: TN_440_406
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_437_403

description:
Library name: TN_437_403
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_436_402

description:
Library name: TN_436_402
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_435_401

description:
Library name: TN_435_401
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/0/5

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 1, 0 hpe, stem base


title: Consortium_0dpi_043_RNA_Ln1

description: Library name: Consortium_0dpi_043_RNA_Ln1


title: X1/0/2

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 1, 0 hpe, upper leaves


title: Consortium_0dpi_042_RNA_Ln4

description: Library name: Consortium_0dpi_042_RNA_Ln4


title: Nasopharyngeal sample – TN_443_410

description:
Library name: TN_443_410
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F1/0/3

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 1, 0 hpe, shoot apex


title: Nasopharyngeal sample – TN_434_400

description:
Library name: TN_434_400
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_042_RNA_Ln2

description: Library name: Consortium_0dpi_042_RNA_Ln2


title: Nasopharyngeal sample – TN_433_399

description:
Library name: TN_433_399
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_042_RNA_Ln1

description: Library name: Consortium_0dpi_042_RNA_Ln1


title: Nasopharyngeal sample – TN_431_397

description:
Library name: TN_431_397
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_422_386

description:
Library name: TN_422_386
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_428_394

description:
Library name: TN_428_394
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_421_385

description:
Library name: TN_421_385
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_423_387

description:
Library name: TN_423_387
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_042_RNA_Ln3

description: Library name: Consortium_0dpi_042_RNA_Ln3


title: X1/0/4

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 1, 0 hpe, upper shoot


title: Consortium_0dpi_041_RNA_Ln4

description: Library name: Consortium_0dpi_041_RNA_Ln4


title: X2/0/5

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 2, 0 hpe, stem base


title: Nasopharyngeal sample – TN_432_398

description:
Library name: TN_432_398
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

source_name: nasopharyngeal swab


title: Nasopharyngeal sample – TN_414_377

description:
Library name: TN_414_377
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_041_RNA_Ln3

description: Library name: Consortium_0dpi_041_RNA_Ln3


title: X3/0/3

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 3, 0 hpe, shoot apex


title: X2/0/3

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 2, 0 hpe, shoot apex


title: Nasopharyngeal sample – TN_413_376

description:
Library name: TN_413_376
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_405_363

description:
Library name: TN_405_363
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_041_RNA_Ln2

description: Library name: Consortium_0dpi_041_RNA_Ln2


title: Consortium_0dpi_041_RNA_Ln1

description: Library name: Consortium_0dpi_041_RNA_Ln1


title: Nasopharyngeal sample – TN_407_366

description:
Library name: TN_407_366
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F2/0/2

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 2, 0 hpe, upper leaves


title: Nasopharyngeal sample – TN_402_360

description:
Library name: TN_402_360
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/0/2

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 3, 0 hpe, upper leaves


title: F3/0/4

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 3, 0 hpe, upper shoot


title: Nasopharyngeal sample – TN_404_362

description:
Library name: TN_404_362
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_394_352

description:
Library name: TN_394_352
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X1/0/5

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 1, 0 hpe, stem base


title: Nasopharyngeal sample – TN_403_361

description:
Library name: TN_403_361
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/0/1

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 3, 0 hpe, basal leaves


title: Nasopharyngeal sample – TN_391_349

description:
Library name: TN_391_349
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_400_358

description:
Library name: TN_400_358
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_390_348

description:
Library name: TN_390_348
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_039_RNA_Ln4

description: Library name: Consortium_0dpi_039_RNA_Ln4


title: F2/0/1

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 2, 0 hpe, basal leaves


title: Consortium_0dpi_039_RNA_Ln3

description: Library name: Consortium_0dpi_039_RNA_Ln3


title: Consortium_0dpi_040_RNA_Ln4

description: Library name: Consortium_0dpi_040_RNA_Ln4


title: Nasopharyngeal sample – TN_401_359

description:
Library name: TN_401_359
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_039_RNA_Ln2

description: Library name: Consortium_0dpi_039_RNA_Ln2


title: Nasopharyngeal sample – TN_387_344

description:
Library name: TN_387_344
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_039_RNA_Ln1

description: Library name: Consortium_0dpi_039_RNA_Ln1


title: Nasopharyngeal sample – TN_385_340

description:
Library name: TN_385_340
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_040_RNA_Ln3

description: Library name: Consortium_0dpi_040_RNA_Ln3


title: X2/0/4

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 2, 0 hpe, upper shoot


title: Nasopharyngeal sample – TN_381_335

description:
Library name: TN_381_335
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_395_353

description:
Library name: TN_395_353
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F2/0/4

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 2, 0 hpe, upper shoot


title: F3/0/3

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 3, 0 hpe, shoot apex


title: Nasopharyngeal sample – TN_396_354

description:
Library name: TN_396_354
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_380_334

description:
Library name: TN_380_334
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_379_333

description:
Library name: TN_379_333
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F3/0/5

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 3, 0 hpe, stem base


title: Consortium_0dpi_040_RNA_Ln1

description: Library name: Consortium_0dpi_040_RNA_Ln1


title: Nasopharyngeal sample – TN_393_351

description:
Library name: TN_393_351
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_038_RNA_Ln3

description: Library name: Consortium_0dpi_038_RNA_Ln3


title: Nasopharyngeal sample – TN_420_384

description:
Library name: TN_420_384
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_392_350

description:
Library name: TN_392_350
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_038_RNA_Ln1

description: Library name: Consortium_0dpi_038_RNA_Ln1


title: Nasopharyngeal sample – TN_389_347

description:
Library name: TN_389_347
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_357_308

description:
Library name: TN_357_308
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_037_RNA_Ln4

description: Library name: Consortium_0dpi_037_RNA_Ln4


title: F1/0/1

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 1, 0 hpe, basal leaves


title: Nasopharyngeal sample – TN_372_326

description:
Library name: TN_372_326
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_353_304

description:
Library name: TN_353_304
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_040_RNA_Ln2

description: Library name: Consortium_0dpi_040_RNA_Ln2


title: F1/0/2

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 1, 0 hpe, upper leaves


title: Consortium_0dpi_037_RNA_Ln2

description: Library name: Consortium_0dpi_037_RNA_Ln2


title: Nasopharyngeal sample – TN_388_345

description:
Library name: TN_388_345
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_349_300

description:
Library name: TN_349_300
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_038_RNA_Ln4

description: Library name: Consortium_0dpi_038_RNA_Ln4


title: Nasopharyngeal sample – TN_346_297

description:
Library name: TN_346_297
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_345_296

description:
Library name: TN_345_296
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_348_299

description:
Library name: TN_348_299
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: WT Liver NK cells, Metformin, Day3 2

city: Hiroshima

first: Tomoaki

last: Bekki

address: Kasumi1-2-3, Minamiku

country: Japan

institute: Hiroshima University

description:
Library name: Sample5
T0000-945

data_processing:
Raw sequence reads were aligned to the [insert reference genome, e.g., GRCm39] reference genome using the Illumina DRAGEN Bio-IT Platform (version 4.3.6). Gene- and transcript-level expression abundances were quantified based on the genomic mapping coordinates and the [insert gene annotation, e.g., GENCODE vM33] gene definition file.
Assembly: mm10
Supplementary files format and content: TV0419_gene_expression.txt

organism: Mus musculus

source_name: Liver NK cells

extract_protocol:
Total RNA was extracted from murine liver NK cells using the RNeasy Mini Kit (Qiagen, Venlo, Netherlands).
RNA libraries for RNA-seq were prepared using SMART-seq mRNA following manufacture's protocols.

treatment_protocol: Liver NK cells change was induced by metformin (200mg/kg) treatment for three days.

value: immune cells

value: Liver NK cells

value: WT

tag: treatment

value: Metformin


title: Nasopharyngeal sample – TN_343_294

description:
Library name: TN_343_294
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_377_331

description:
Library name: TN_377_331
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Consortium_0dpi_038_RNA_Ln2

description: Library name: Consortium_0dpi_038_RNA_Ln2

value: cecal tissue

value: epithelial


title: Nasopharyngeal sample – TN_342_293

description:
Library name: TN_342_293
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_369_322

description:
Library name: TN_369_322
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_344_295

description:
Library name: TN_344_295
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_340_291

description:
Library name: TN_340_291
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F3/0/1

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 3, 0 hpe, basal leaves


title: Nasopharyngeal sample – TN_384_339

description:
Library name: TN_384_339
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

source_name: nasopharyngeal swab


title: Nasopharyngeal sample – TN_366_319

description:
Library name: TN_366_319
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_364_315

description:
Library name: TN_364_315
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/0/5

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 3, 0 hpe, stem base


title: WT Liver NK cells, Control, Day3 3

description:
Library name: Sample3
T0000-943

value: PBS


title: Nasopharyngeal sample – TN_365_318

description:
Library name: TN_365_318
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: Nasopharyngeal sample – TN_339_290

description:
Library name: TN_339_290
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: X3/0/4

description: gene expression 0 hours post excision

source_name: P. axillaris, replicate 3, 0 hpe, upper shoot

value: upper shoot


title: Nasopharyngeal sample – TN_336_287

description:
Library name: TN_336_287
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.

value: nasopharyngeal swab


title: F3/0/2

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 3, 0 hpe, upper leaves

value: upper leaves


title: Nasopharyngeal sample – TN_355_306

description:
Library name: TN_355_306
acterial 16S rRNA V3–V4 amplicon sequencing of nasopharyngeal sample.


title: F2/0/3

description: gene expression 0 hours post excision

source_name: P. inflata, replicate 2, 0 hpe, shoot apex