title: proliferation CRISPR screen from K562 (ENCLB848RMW)

description:
https://www.encodeproject.org/experiments/ENCSR294JZL/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for dCas9 tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR294JZL
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB848RMW

value: cell line

value: adult

value: ENCBS991RDE at ENCODE; https://www.encodeproject.org/ENCBS991RDE/


title: DNase-seq from NCI-H889 (ENCLB168ZIY)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR850GGK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR850GGK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB168ZIY

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens NCI-H889 cell line treated with 0.1% DMSO for 48 hours

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: dev stage

tag: age

value: 69 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

tag: link

value: ENCBS638WWG at ENCODE; https://www.encodeproject.org/ENCBS638WWG/


title: Flow-FISH CRISPR screen from K562 (ENCLB973VSK)

description:
https://www.encodeproject.org/experiments/ENCSR856ZPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR856ZPR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB973VSK
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS543OYJ at ENCODE; https://www.encodeproject.org/ENCBS543OYJ/


title: proliferation CRISPR screen from K562 (ENCLB308YYU)

description:
https://www.encodeproject.org/experiments/ENCSR237VMX/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR237VMX
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB308YYU

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/cbb6ede0-0921-49ea-8eb9-609ec17f06cc/@@download/attachment/greenleaf_largescale_dhs_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS946ZYR at ENCODE; https://www.encodeproject.org/ENCBS946ZYR/


title: proliferation CRISPR screen from K562 (ENCLB479KWH)

description:
https://www.encodeproject.org/experiments/ENCSR013IWY/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for dCas9-KRAB-WSR7EEE/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR013IWY
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB479KWH

extract_protocol:
general protocol: https://www.encodeproject.org/documents/984d153c-01b8-4387-9432-0a8d906288bc/@@download/attachment/greenleaf_effector_batch_tiling_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: cell line

value: ENCBS993ZMG at ENCODE; https://www.encodeproject.org/ENCBS993ZMG/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB370QQK)

description:
https://www.encodeproject.org/experiments/ENCSR854HBF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR854HBF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB370QQK

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: adult

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS496JIT at ENCODE; https://www.encodeproject.org/ENCBS496JIT/


title: Flow-FISH CRISPR screen from K562 (ENCLB758QTB)

description:
https://www.encodeproject.org/experiments/ENCSR856ZPR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR856ZPR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB758QTB
size range: 200-210

value: female

value: ATCC


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB372PQF)

description:
https://www.encodeproject.org/experiments/ENCSR849MXJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849MXJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB372PQF

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS517EOZ at ENCODE; https://www.encodeproject.org/ENCBS517EOZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB248QAX)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB248QAX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS854ARY at ENCODE; https://www.encodeproject.org/ENCBS854ARY/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB614VCS)

description:
https://www.encodeproject.org/experiments/ENCSR849MXJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR849MXJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB614VCS

value: primary cell

value: ENCBS014BOW at ENCODE; https://www.encodeproject.org/ENCBS014BOW/


title: STARR-seq from pancreas (ENCLB352UBQ)

description:
https://www.encodeproject.org/experiments/ENCSR948LAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR948LAJ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR256MBM
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB352UBQ
fragmentation methods: shearing (generic)
size range: 200-600

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens with pancreatic ductal adenocarcinoma; pancreas organoid genetically modified (episome) using transient transfection

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: adult

value: 63 year

tag: passage number

value: Kevin White, UChicago

value: Kevin White

value: ENCBS230ASE at ENCODE; https://www.encodeproject.org/ENCBS230ASE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB038BCI)

description:
https://www.encodeproject.org/experiments/ENCSR851YCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR851YCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB038BCI

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS055IXK at ENCODE; https://www.encodeproject.org/ENCBS055IXK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB315FNU)

description:
https://www.encodeproject.org/experiments/ENCSR851YCL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR851YCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB315FNU

value: ENCBS211SYS at ENCODE; https://www.encodeproject.org/ENCBS211SYS/


title: Flow-FISH CRISPR screen from K562 (ENCLB484PQG)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB484PQG
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS207FSE at ENCODE; https://www.encodeproject.org/ENCBS207FSE/


title: Flow-FISH CRISPR screen from K562 (ENCLB111IBN)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB111IBN
size range: 200-210

value: adult

value: ENCBS854ARY at ENCODE; https://www.encodeproject.org/ENCBS854ARY/


title: proliferation CRISPR screen from K562 (ENCLB114SQE)

description:
https://www.encodeproject.org/experiments/ENCSR839FIS/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for dCas9-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR839FIS
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB114SQE

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS240CFV at ENCODE; https://www.encodeproject.org/ENCBS240CFV/


title: Flow-FISH CRISPR screen from K562 (ENCLB719CXP)

description:
https://www.encodeproject.org/experiments/ENCSR851UJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR851UJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB719CXP
size range: 200-210

value: ENCBS672KSB at ENCODE; https://www.encodeproject.org/ENCBS672KSB/


title: proliferation CRISPR screen from HCT116 (ENCLB076HDH)

description:
https://www.encodeproject.org/experiments/ENCSR847SCB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR847SCB
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB076HDH
size range: 710-720

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time

value: male

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS966XLQ at ENCODE; https://www.encodeproject.org/ENCBS966XLQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB866NNB)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB866NNB
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB782KRA)

description:
https://www.encodeproject.org/experiments/ENCSR851UJM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR851UJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB782KRA
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB216EYY)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB216EYY

organism: Mus musculus

source_name: Mus musculus strain Rosa26-LSL-dCas9-KRAB activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell genetically modified (CRISPRi) using CRISPR

value: primary cell

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS350FCZ at ENCODE; https://www.encodeproject.org/ENCBS350FCZ/


title: proliferation CRISPR screen from K562 (ENCLB897ZUK)

description:
https://www.encodeproject.org/experiments/ENCSR039ZOS/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for dCas9-RYBP/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR039ZOS
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB897ZUK

value: adult

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS794XSF at ENCODE; https://www.encodeproject.org/ENCBS794XSF/


title: Flow-FISH CRISPR screen from K562 (ENCLB511DMW)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB511DMW
size range: 200-210

value: cell line

value: ENCBS207FSE at ENCODE; https://www.encodeproject.org/ENCBS207FSE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB723RHX)

description:
https://www.encodeproject.org/experiments/ENCSR846BLW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR846BLW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB723RHX

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS891WTN at ENCODE; https://www.encodeproject.org/ENCBS891WTN/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB884ZXI)

description:
https://www.encodeproject.org/experiments/ENCSR846HUP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR846HUP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB884ZXI

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour

value: primary cell

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS845ZQI at ENCODE; https://www.encodeproject.org/ENCBS845ZQI/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB698NZK)

description:
https://www.encodeproject.org/experiments/ENCSR845HOD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR845HOD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB698NZK

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS098YQG at ENCODE; https://www.encodeproject.org/ENCBS098YQG/


title: proliferation CRISPR screen from K562 (ENCLB828YYP)

description:
https://www.encodeproject.org/experiments/ENCSR007UZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for dCas9-ZNF705-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR007UZQ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB828YYP

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS412SRC at ENCODE; https://www.encodeproject.org/ENCBS412SRC/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB586AZX)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB586AZX

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS287HYT at ENCODE; https://www.encodeproject.org/ENCBS287HYT/


title: DNase-seq from NCI-H889 (ENCLB077UBQ)

description:
https://www.encodeproject.org/experiments/ENCSR850GGK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR850GGK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB077UBQ

value: female

value: 69 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS132UPA at ENCODE; https://www.encodeproject.org/ENCBS132UPA/


title: Control CRISPR screen from WTC11 (ENCLB678HCG)

description:
https://www.encodeproject.org/experiments/ENCSR049FQL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR049FQL
assay title: Control CRISPR screen
possible controls: ENCSR161WWK
encode release date: 2023-09-12
lab: Bing Ren, UCSD
library encode accession: ENCLB678HCG
fragmentation methods: chemical (Illumina TruSeq)
size range: 710-720

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 0 days post-nucleic acid delivery time

value: cell line

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: Bing Ren, UCSD

value: ENCBS948JTJ at ENCODE; https://www.encodeproject.org/ENCBS948JTJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB289GNL)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB289GNL
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS958AAT at ENCODE; https://www.encodeproject.org/ENCBS958AAT/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB395RIN)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB395RIN

value: primary cell

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS710GOT at ENCODE; https://www.encodeproject.org/ENCBS710GOT/


title: Flow-FISH CRISPR screen from K562 (ENCLB627SER)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB627SER
size range: 200-210

value: cell line

value: female

value: ATCC

value: ENCBS854ARY at ENCODE; https://www.encodeproject.org/ENCBS854ARY/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB965HON)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB965HON


title: Flow-FISH CRISPR screen from K562 (ENCLB228ADW)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB228ADW
size range: 200-210

value: adult

value: ENCBS207FSE at ENCODE; https://www.encodeproject.org/ENCBS207FSE/


title: Flow-FISH CRISPR screen from K562 (ENCLB934DJD)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB934DJD
size range: 200-210

value: ENCBS480AFO at ENCODE; https://www.encodeproject.org/ENCBS480AFO/


title: CRISPR screen from WTC11 (ENCLB875DDU)

description:
https://www.encodeproject.org/experiments/ENCSR380RDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR380RDA
assay title: CRISPR screen
possible controls: ENCSR161WWK
encode release date: 2023-09-12
lab: Bing Ren, UCSD
library encode accession: ENCLB875DDU
fragmentation methods: chemical (Illumina TruSeq)
size range: 710-720

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time

value: male

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS865REL at ENCODE; https://www.encodeproject.org/ENCBS865REL/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB173ZGU)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB173ZGU

value: primary cell

value: not collected

value: ENCBS287HYT at ENCODE; https://www.encodeproject.org/ENCBS287HYT/


title: Flow-FISH CRISPR screen from K562 (ENCLB067EQR)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB067EQR
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS193WXF at ENCODE; https://www.encodeproject.org/ENCBS193WXF/


title: DNase-seq from HUDEP-2 (ENCLB321SDC)

description:
https://www.encodeproject.org/experiments/ENCSR848KBM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR848KBM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB321SDC

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS395BUM at ENCODE; https://www.encodeproject.org/ENCBS395BUM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB081EIR)

description:
https://www.encodeproject.org/experiments/ENCSR848VCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR848VCF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB081EIR

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: male

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS005LOG at ENCODE; https://www.encodeproject.org/ENCBS005LOG/


title: proliferation CRISPR screen from HCT116 (ENCLB699UER)

description:
https://www.encodeproject.org/experiments/ENCSR847SCB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR847SCB
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB699UER
size range: 710-720

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ATCC

value: ENCBS550OXS at ENCODE; https://www.encodeproject.org/ENCBS550OXS/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB083JGR)

description:
https://www.encodeproject.org/experiments/ENCSR846HUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR846HUP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083JGR

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS955JSY at ENCODE; https://www.encodeproject.org/ENCBS955JSY/


title: Control CRISPR screen from WTC11 (ENCLB063QZB)

description:
https://www.encodeproject.org/experiments/ENCSR049FQL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR049FQL
assay title: Control CRISPR screen
possible controls: ENCSR161WWK
encode release date: 2023-09-12
lab: Bing Ren, UCSD
library encode accession: ENCLB063QZB
fragmentation methods: chemical (Illumina TruSeq)
size range: 710-720

value: cell line

value: ENCBS788YHG at ENCODE; https://www.encodeproject.org/ENCBS788YHG/


title: Flow-FISH CRISPR screen from K562 (ENCLB860CBQ)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860CBQ
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS480AFO at ENCODE; https://www.encodeproject.org/ENCBS480AFO/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB508ATJ)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB508ATJ

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS028PPA at ENCODE; https://www.encodeproject.org/ENCBS028PPA/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB480DXI)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB480DXI


title: DNase-seq from suppressor macrophage (ENCLB648VNL)

description:
https://www.encodeproject.org/experiments/ENCSR377SES/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR377SES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB648VNL

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 24 hours

value: suppressor macrophage

value: male

value: adult

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS414DZH at ENCODE; https://www.encodeproject.org/ENCBS414DZH/


title: DNase-seq from CD14-positive monocyte (ENCLB076EDS)

description:
https://www.encodeproject.org/experiments/ENCSR376UDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376UDG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB076EDS
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: ENCBS684JPM at ENCODE; https://www.encodeproject.org/ENCBS684JPM/


title: DNase-seq from NCI-H187 (ENCLB786SRE)

description:
https://www.encodeproject.org/experiments/ENCSR367TKT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR367TKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB786SRE

source_name: Homo sapiens NCI-H187 cell line

value: cell line

value: 47 year

value: ATCC

value: ENCBS000SWF at ENCODE; https://www.encodeproject.org/ENCBS000SWF/


title: Flow-FISH CRISPR screen from K562 (ENCLB076TCC)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB076TCC
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS726KAD at ENCODE; https://www.encodeproject.org/ENCBS726KAD/


title: FACS CRISPR screen from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB268NDZ)

description:
https://www.encodeproject.org/experiments/ENCSR202QXN/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR202QXN
assay title: FACS CRISPR screen
assembly: mm10
encode release date: 2024-08-02
lab: Tim Reddy, Duke
library encode accession: ENCLB268NDZ

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS350FCZ at ENCODE; https://www.encodeproject.org/ENCBS350FCZ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB415NXO)

description:
https://www.encodeproject.org/experiments/ENCSR845HOD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR845HOD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB415NXO

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS846IHB at ENCODE; https://www.encodeproject.org/ENCBS846IHB/


title: Flow-FISH CRISPR screen from K562 (ENCLB836HEO)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB836HEO
size range: 200-210

value: cell line

value: ATCC

value: ENCBS958AAT at ENCODE; https://www.encodeproject.org/ENCBS958AAT/


title: DNase-seq from NCI-H187 (ENCLB080XVI)

description:
https://www.encodeproject.org/experiments/ENCSR367TKT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR367TKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB080XVI

value: male

value: 47 year

value: ENCBS674RQQ at ENCODE; https://www.encodeproject.org/ENCBS674RQQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB047JQZ)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB047JQZ
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS726KAD at ENCODE; https://www.encodeproject.org/ENCBS726KAD/


title: DNase-seq from NCI-H187 (ENCLB286JAY)

description:
https://www.encodeproject.org/experiments/ENCSR367TKT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR367TKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB286JAY

value: adult

value: ENCBS332CDT at ENCODE; https://www.encodeproject.org/ENCBS332CDT/


title: Flow-FISH CRISPR screen from K562 (ENCLB546TLY)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB546TLY
size range: 200-210


title: DNase-seq from activated T-helper 9 cell (ENCLB418TRV)

description:
https://www.encodeproject.org/experiments/ENCSR842FLD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR842FLD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB418TRV

source_name: Homo sapiens female adult (33 years) activated T-helper 9 primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: activated T-helper 9 cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS271SPT at ENCODE; https://www.encodeproject.org/ENCBS271SPT/


title: proliferation CRISPR screen from K562 (ENCLB600LPB)

description:
https://www.encodeproject.org/experiments/ENCSR842CIE/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR842CIE
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB600LPB

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: cell line

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS978VSP at ENCODE; https://www.encodeproject.org/ENCBS978VSP/


title: DNase-seq from NCI-H187 (ENCLB809QCJ)

description:
https://www.encodeproject.org/experiments/ENCSR367TKT/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR367TKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB809QCJ

value: male

value: 47 year

value: ATCC

value: ENCBS945JRA at ENCODE; https://www.encodeproject.org/ENCBS945JRA/


title: DNase-seq from T47D (ENCLB328ZIR)

description:
https://www.encodeproject.org/experiments/ENCSR366ULU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR366ULU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB328ZIR
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 4 nM bisphenol a for 120 hours

value: female

value: mammary ductal carcinoma

value: adult

value: 54 year

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS698AVE at ENCODE; https://www.encodeproject.org/ENCBS698AVE/


title: Flow-FISH CRISPR screen from K562 (ENCLB770GLU)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB770GLU
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS958AAT at ENCODE; https://www.encodeproject.org/ENCBS958AAT/


title: DNase-seq from suppressor macrophage (ENCLB051VSY)

description:
https://www.encodeproject.org/experiments/ENCSR389MPM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389MPM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB051VSY

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS435WIO at ENCODE; https://www.encodeproject.org/ENCBS435WIO/


title: DNase-seq from COR-L47 (ENCLB258AWI)

description:
https://www.encodeproject.org/experiments/ENCSR574JNS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR574JNS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB258AWI

source_name: Homo sapiens COR-L47 cell line

value: cell line

value: male

value: 67 year

value: ECACC

value: ENCBS401IRZ at ENCODE; https://www.encodeproject.org/ENCBS401IRZ/


title: DNase-seq from suppressor macrophage (ENCLB591ENM)

description:
https://www.encodeproject.org/experiments/ENCSR377SES/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR377SES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB591ENM
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: adult

value: 40 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS735XQW at ENCODE; https://www.encodeproject.org/ENCBS735XQW/


title: Flow-FISH CRISPR screen from K562 (ENCLB218ZRC)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB218ZRC
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS963KEG at ENCODE; https://www.encodeproject.org/ENCBS963KEG/


title: Flow-FISH CRISPR screen from K562 (ENCLB859FQR)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB859FQR
size range: 200-210

value: ENCBS480AFO at ENCODE; https://www.encodeproject.org/ENCBS480AFO/


title: Flow-FISH CRISPR screen from K562 (ENCLB183DIP)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB183DIP
size range: 200-210


title: DNase-seq from COR-L47 (ENCLB935JPD)

description:
https://www.encodeproject.org/experiments/ENCSR574JNS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR574JNS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB935JPD

value: John Stamatoyannopoulos, UW

value: ENCBS290BDG at ENCODE; https://www.encodeproject.org/ENCBS290BDG/


title: DNase-seq from T-helper 2 cell (ENCLB930QEG)

description:
https://www.encodeproject.org/experiments/ENCSR842OFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR842OFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB930QEG

source_name: Homo sapiens male adult (24 years) T-helper 2 primary cell

value: T-helper 2 cell

value: primary cell

value: male

value: 24 year

value: AllCells

value: ENCBS852GEE at ENCODE; https://www.encodeproject.org/ENCBS852GEE/


title: DNase-seq from NCI-H187 (ENCLB637LYP)

description:
https://www.encodeproject.org/experiments/ENCSR367TKT/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR367TKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB637LYP
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: cell line

value: adult

value: 47 year

value: ENCBS331OZP at ENCODE; https://www.encodeproject.org/ENCBS331OZP/


title: DNase-seq from suppressor macrophage (ENCLB092ZOO)

description:
https://www.encodeproject.org/experiments/ENCSR348JIL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR348JIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB092ZOO
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: 21 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS774DZP at ENCODE; https://www.encodeproject.org/ENCBS774DZP/


title: Flow-FISH CRISPR screen from K562 (ENCLB674IUA)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB674IUA
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS963KEG at ENCODE; https://www.encodeproject.org/ENCBS963KEG/


title: DNase-seq from T-helper 2 cell (ENCLB778UVP)

description:
https://www.encodeproject.org/experiments/ENCSR842OFU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR842OFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB778UVP

value: T-helper 2 cell

value: primary cell

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS619BBF at ENCODE; https://www.encodeproject.org/ENCBS619BBF/


title: DNase-seq from NCI-H2029 (ENCLB629RTG)

description:
https://www.encodeproject.org/experiments/ENCSR556KKU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR556KKU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB629RTG

source_name: Homo sapiens NCI-H2029 cell line

value: cell line

value: adult

value: 69 year

value: ENCBS127ZAB at ENCODE; https://www.encodeproject.org/ENCBS127ZAB/


title: Flow-FISH CRISPR screen from K562 (ENCLB637BZB)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB637BZB
size range: 200-210

value: female

value: ENCBS870CKP at ENCODE; https://www.encodeproject.org/ENCBS870CKP/


title: DNase-seq from NCI-H2029 (ENCLB383BVA)

description:
https://www.encodeproject.org/experiments/ENCSR556KKU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR556KKU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB383BVA
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: ENCBS844OFQ at ENCODE; https://www.encodeproject.org/ENCBS844OFQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB624AXJ)

description:
https://www.encodeproject.org/experiments/ENCSR844IEV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR844IEV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB624AXJ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS193WXF at ENCODE; https://www.encodeproject.org/ENCBS193WXF/


title: DNase-seq from skin of body (ENCLB959XJD)

description:
https://www.encodeproject.org/experiments/ENCSR573VBJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573VBJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB959XJD

source_name: Homo sapiens embryo (96 days) skin of body tissue

value: skin of body

value: tissue

value: not collected

value: embryonic

value: 96 day

value: Ian Glass

value: ENCBS445EMX at ENCODE; https://www.encodeproject.org/ENCBS445EMX/


title: DNase-seq from suppressor macrophage (ENCLB896FLV)

description:
https://www.encodeproject.org/experiments/ENCSR550BBN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR550BBN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB896FLV

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 4 hours

value: suppressor macrophage

value: primary cell

value: male

value: adult

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS241PDS at ENCODE; https://www.encodeproject.org/ENCBS241PDS/


title: Flow-FISH CRISPR screen from K562 (ENCLB351SAL)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB351SAL
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS870CKP at ENCODE; https://www.encodeproject.org/ENCBS870CKP/


title: Flow-FISH CRISPR screen from K562 (ENCLB439QJA)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB439QJA
size range: 200-210


title: DNase-seq from COR-L47 (ENCLB472MAC)

description:
https://www.encodeproject.org/experiments/ENCSR574JNS/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR574JNS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB472MAC
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: 67 year

value: ECACC

value: ENCBS483LVG at ENCODE; https://www.encodeproject.org/ENCBS483LVG/


title: Flow-FISH CRISPR screen from K562 (ENCLB860VDX)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860VDX
size range: 200-210

value: ENCBS963KEG at ENCODE; https://www.encodeproject.org/ENCBS963KEG/


title: Flow-FISH CRISPR screen from K562 (ENCLB074TSP)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB074TSP
size range: 200-210

value: adult


title: proliferation CRISPR screen from K562 (ENCLB603UJE)

description:
https://www.encodeproject.org/experiments/ENCSR842CIE/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR842CIE
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB603UJE

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS419PLL at ENCODE; https://www.encodeproject.org/ENCBS419PLL/


title: DNase-seq from CD14-positive monocyte (ENCLB964DVH)

description:
https://www.encodeproject.org/experiments/ENCSR343TXL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR343TXL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB964DVH

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS019RDU at ENCODE; https://www.encodeproject.org/ENCBS019RDU/


title: DNase-seq from suppressor macrophage (ENCLB644OXP)

description:
https://www.encodeproject.org/experiments/ENCSR551PUD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR551PUD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB644OXP
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell

value: suppressor macrophage

value: 40 year

value: ENCBS740RUQ at ENCODE; https://www.encodeproject.org/ENCBS740RUQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB986JML)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB986JML
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS853JCZ at ENCODE; https://www.encodeproject.org/ENCBS853JCZ/


title: DNase-seq from NCI-H524 (ENCLB882AKT)

description:
https://www.encodeproject.org/experiments/ENCSR549RDB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR549RDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB882AKT

source_name: Homo sapiens NCI-H524 cell line

value: adult

value: 63 year

value: ENCBS827WFA at ENCODE; https://www.encodeproject.org/ENCBS827WFA/


title: Flow-FISH CRISPR screen from K562 (ENCLB330TDA)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB330TDA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB759AEM)

description:
https://www.encodeproject.org/experiments/ENCSR849BLB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR849BLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB759AEM
size range: 200-210

value: ENCBS854ARY at ENCODE; https://www.encodeproject.org/ENCBS854ARY/


title: Flow-FISH CRISPR screen from K562 (ENCLB544PGY)

description:
https://www.encodeproject.org/experiments/ENCSR840TDD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR840TDD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB544PGY
size range: 200-210

value: ENCBS963KEG at ENCODE; https://www.encodeproject.org/ENCBS963KEG/


title: DNase-seq from suppressor macrophage (ENCLB441WHC)

description:
https://www.encodeproject.org/experiments/ENCSR550BBN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR550BBN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB441WHC
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

value: primary cell

value: male

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS978XQK at ENCODE; https://www.encodeproject.org/ENCBS978XQK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB081ALT)

description:
https://www.encodeproject.org/experiments/ENCSR837WQM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837WQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB081ALT

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 38 year

value: AllCells

value: ENCBS082UFC at ENCODE; https://www.encodeproject.org/ENCBS082UFC/


title: DNase-seq from HUDEP-2 (ENCLB826UQL)

description:
https://www.encodeproject.org/experiments/ENCSR832KIO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR832KIO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB826UQL

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS150JJP at ENCODE; https://www.encodeproject.org/ENCBS150JJP/


title: DNase-seq from NCI-H524 (ENCLB236WQT)

description:
https://www.encodeproject.org/experiments/ENCSR549RDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR549RDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB236WQT

value: adult

value: 63 year

value: ATCC

value: ENCBS372BCF at ENCODE; https://www.encodeproject.org/ENCBS372BCF/


title: Flow-FISH CRISPR screen from K562 (ENCLB047RYE)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB047RYE
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS136EZQ at ENCODE; https://www.encodeproject.org/ENCBS136EZQ/


title: DNase-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB853DYU)

description:
https://www.encodeproject.org/experiments/ENCSR831ZGB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR831ZGB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB853DYU

source_name: Homo sapiens male adult (30 years) effector memory CD8-positive, alpha-beta T primary cell

value: primary cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: ENCBS051QGE at ENCODE; https://www.encodeproject.org/ENCBS051QGE/


title: DNase-seq from SHP77 (ENCLB115MSN)

description:
https://www.encodeproject.org/experiments/ENCSR319KKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR319KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB115MSN

source_name: Homo sapiens SHP77 cell line

value: cell line

value: 54 year

value: ENCBS171ZRQ at ENCODE; https://www.encodeproject.org/ENCBS171ZRQ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB476LQA)

description:
https://www.encodeproject.org/experiments/ENCSR830WDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR830WDA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476LQA

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-4 for 4 hours

value: CD4-positive, alpha-beta T cell

value: adult

value: 34 year

value: AllCells

value: treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS753XKR at ENCODE; https://www.encodeproject.org/ENCBS753XKR/


title: DNase-seq from effector memory CD8-positive, alpha-beta T cell (ENCLB943UPY)

description:
https://www.encodeproject.org/experiments/ENCSR831ZGB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR831ZGB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB943UPY

value: ENCBS961OJV at ENCODE; https://www.encodeproject.org/ENCBS961OJV/


title: DNase-seq from SHP77 (ENCLB245JAR)

description:
https://www.encodeproject.org/experiments/ENCSR319KKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR319KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB245JAR

value: ATCC

value: ENCBS002EGA at ENCODE; https://www.encodeproject.org/ENCBS002EGA/


title: Flow-FISH CRISPR screen from K562 (ENCLB460CIV)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB460CIV
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS136EZQ at ENCODE; https://www.encodeproject.org/ENCBS136EZQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB147INI)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB147INI
size range: 200-210

value: cell line


title: DNase-seq from NCI-H1048 (ENCLB868TOM)

description:
https://www.encodeproject.org/experiments/ENCSR314EOY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR314EOY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB868TOM

source_name: Homo sapiens NCI-H1048 cell line

value: John Stamatoyannopoulos, UW

value: ENCBS566VRV at ENCODE; https://www.encodeproject.org/ENCBS566VRV/


title: DNase-seq from NCI-H1048 (ENCLB588WKZ)

description:
https://www.encodeproject.org/experiments/ENCSR314EOY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR314EOY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB588WKZ

value: ENCBS755OIL at ENCODE; https://www.encodeproject.org/ENCBS755OIL/


title: DNase-seq from NCI-H2081 (ENCLB915LJR)

description:
https://www.encodeproject.org/experiments/ENCSR528ZIM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR528ZIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB915LJR

source_name: Homo sapiens NCI-H2081 cell line

value: adult

value: 59 year

value: ENCBS997QZK at ENCODE; https://www.encodeproject.org/ENCBS997QZK/


title: DNase-seq from MCF-7 (ENCLB051AUD)

description:
https://www.encodeproject.org/experiments/ENCSR300HSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR300HSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB051AUD
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 120 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS718AJS at ENCODE; https://www.encodeproject.org/ENCBS718AJS/


title: Flow-FISH CRISPR screen from BJAB (ENCLB599NKE)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB599NKE
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: BJAB

value: child

value: 5 year

value: ATCC

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS239UQV at ENCODE; https://www.encodeproject.org/ENCBS239UQV/


title: DNase-seq from NCI-H2081 (ENCLB719PUU)

description:
https://www.encodeproject.org/experiments/ENCSR528ZIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR528ZIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB719PUU

value: cell line

value: female

value: ENCBS816NAG at ENCODE; https://www.encodeproject.org/ENCBS816NAG/


title: Flow-FISH CRISPR screen from K562 (ENCLB017DJT)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB017DJT
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS136EZQ at ENCODE; https://www.encodeproject.org/ENCBS136EZQ/


title: DNase-seq from NCI-H2171 (ENCLB090DPD)

description:
https://www.encodeproject.org/experiments/ENCSR301HWX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR301HWX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB090DPD
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H2171 cell line

value: male

value: adult

value: 50 year

value: John Stamatoyannopoulos, UW

value: ENCBS554ETE at ENCODE; https://www.encodeproject.org/ENCBS554ETE/


title: Flow-FISH CRISPR screen from K562 (ENCLB683OSQ)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB683OSQ
size range: 200-210

value: ENCBS853JCZ at ENCODE; https://www.encodeproject.org/ENCBS853JCZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB165BER)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB165BER
size range: 200-210

value: BJAB

value: child

value: 5 year


title: DNase-seq from T47D (ENCLB832IVM)

description:
https://www.encodeproject.org/experiments/ENCSR299EKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR299EKI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB832IVM
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 10 nM genistein for 120 hours

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS071KYJ at ENCODE; https://www.encodeproject.org/ENCBS071KYJ/


title: DNase-seq from NCI-H1105 (ENCLB450MFK)

description:
https://www.encodeproject.org/experiments/ENCSR292COP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR292COP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB450MFK

source_name: Homo sapiens NCI-H1105 cell line

value: cell line

value: 73 year

value: ENCBS479VLU at ENCODE; https://www.encodeproject.org/ENCBS479VLU/


title: Flow-FISH CRISPR screen from BJAB (ENCLB816FZQ)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB816FZQ
size range: 200-210

value: female

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS030QWI at ENCODE; https://www.encodeproject.org/ENCBS030QWI/


title: DNase-seq from NCI-H2171 (ENCLB572WMP)

description:
https://www.encodeproject.org/experiments/ENCSR301HWX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR301HWX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572WMP

value: male

value: adult

value: 50 year

value: John Stamatoyannopoulos, UW

value: ENCBS772NNO at ENCODE; https://www.encodeproject.org/ENCBS772NNO/


title: Flow-FISH CRISPR screen from BJAB (ENCLB519LRY)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB519LRY
size range: 200-210

value: BJAB

value: child

value: 5 year


title: Flow-FISH CRISPR screen from BJAB (ENCLB535QCI)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB535QCI
size range: 200-210

value: ATCC

value: ENCBS239UQV at ENCODE; https://www.encodeproject.org/ENCBS239UQV/


title: DNase-seq from spleen (ENCLB214FON)

description:
https://www.encodeproject.org/experiments/ENCSR517YHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR517YHO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB214FON

source_name: Homo sapiens male embryo (120 days) spleen tissue

value: spleen

value: tissue

value: embryonic

value: 120 day

value: Ian Glass

value: ENCBS912OOA at ENCODE; https://www.encodeproject.org/ENCBS912OOA/


title: Flow-FISH CRISPR screen from BJAB (ENCLB413FIY)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB413FIY
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS030QWI at ENCODE; https://www.encodeproject.org/ENCBS030QWI/


title: Flow-FISH CRISPR screen from BJAB (ENCLB928UUB)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB928UUB
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB428SII)

description:
https://www.encodeproject.org/experiments/ENCSR830BWV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR830BWV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428SII
size range: 200-210


title: DNase-seq from NCI-H1105 (ENCLB062GXU)

description:
https://www.encodeproject.org/experiments/ENCSR292COP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR292COP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB062GXU
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: male

value: adult

value: 73 year

value: John Stamatoyannopoulos, UW

value: ENCBS837MFT at ENCODE; https://www.encodeproject.org/ENCBS837MFT/


title: DNase-seq from NCI-H1092 (ENCLB380JCZ)

description:
https://www.encodeproject.org/experiments/ENCSR280QKZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR280QKZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB380JCZ

source_name: Homo sapiens NCI-H1092 cell line

value: 67 year

value: ATCC

value: ENCBS445KPF at ENCODE; https://www.encodeproject.org/ENCBS445KPF/


title: DNase-seq from erythroblast (ENCLB016UWO)

description:
https://www.encodeproject.org/experiments/ENCSR514POY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR514POY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB016UWO
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Homo sapiens fetal erythroblast primary cell

value: erythroblast

value: primary cell

value: not collected

value: fetal

value: unknown

value: John Stamatoyannopoulos

value: ENCBS676SOT at ENCODE; https://www.encodeproject.org/ENCBS676SOT/


title: DNase-seq from NCI-H1092 (ENCLB624ZBG)

description:
https://www.encodeproject.org/experiments/ENCSR280QKZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR280QKZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB624ZBG
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: cell line

value: ENCBS171TNZ at ENCODE; https://www.encodeproject.org/ENCBS171TNZ/


title: DNase-seq from suppressor macrophage (ENCLB554MKO)

description:
https://www.encodeproject.org/experiments/ENCSR491ORH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR491ORH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB554MKO

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS529XWQ at ENCODE; https://www.encodeproject.org/ENCBS529XWQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB263GYY)

description:
https://www.encodeproject.org/experiments/ENCSR830SSC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR830SSC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB263GYY
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS853JCZ at ENCODE; https://www.encodeproject.org/ENCBS853JCZ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB251ZQS)

description:
https://www.encodeproject.org/experiments/ENCSR830BKZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR830BKZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB251ZQS

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-7 for 4 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS069VHT at ENCODE; https://www.encodeproject.org/ENCBS069VHT/


title: DNase-seq from suppressor macrophage (ENCLB770IAY)

description:
https://www.encodeproject.org/experiments/ENCSR271PQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR271PQC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB770IAY
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 1 hour

value: suppressor macrophage

value: male

value: 40 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS188APT at ENCODE; https://www.encodeproject.org/ENCBS188APT/


title: DNase-seq from effector CD8-positive, alpha-beta T cell (ENCLB976JCZ)

description:
https://www.encodeproject.org/experiments/ENCSR826AAY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR826AAY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB976JCZ

source_name: Homo sapiens male adult (24 years) effector CD8-positive, alpha-beta T primary cell

value: 24 year

value: ENCBS273BLC at ENCODE; https://www.encodeproject.org/ENCBS273BLC/


title: DNase-seq from inflammatory macrophage (ENCLB049VLY)

description:
https://www.encodeproject.org/experiments/ENCSR291PNO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR291PNO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB049VLY
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: adult

value: Shelly Heimfeld

value: ENCBS536KFJ at ENCODE; https://www.encodeproject.org/ENCBS536KFJ/


title: DNase-seq from NCI-H524 (ENCLB136LGL)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB136LGL
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H524 cell line

value: cell line

value: 63 year

value: ATCC

value: ENCBS011IQS at ENCODE; https://www.encodeproject.org/ENCBS011IQS/


title: DNase-seq from CD14-positive monocyte (ENCLB920MJT)

description:
https://www.encodeproject.org/experiments/ENCSR491DPW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR491DPW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB920MJT
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: John Stamatoyannopoulos, UW

value: ENCBS871RAC at ENCODE; https://www.encodeproject.org/ENCBS871RAC/


title: DNase-seq from suppressor macrophage (ENCLB781NVK)

description:
https://www.encodeproject.org/experiments/ENCSR489GKS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR489GKS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB781NVK
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: suppressor macrophage

value: male

value: 40 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS801ROO at ENCODE; https://www.encodeproject.org/ENCBS801ROO/


title: DNase-seq from K562 (ENCLB868WCO)

description:
https://www.encodeproject.org/experiments/ENCSR461PLT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR461PLT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB868WCO
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens K562 cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS207EJD at ENCODE; https://www.encodeproject.org/ENCBS207EJD/


title: DNase-seq from NCI-H446 (ENCLB632JOC)

description:
https://www.encodeproject.org/experiments/ENCSR247UDP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR247UDP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB632JOC
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H446 cell line

value: cell line

value: adult

value: 61 year

value: ENCBS675NYL at ENCODE; https://www.encodeproject.org/ENCBS675NYL/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB967PAQ)

description:
https://www.encodeproject.org/experiments/ENCSR825AHY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR825AHY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB967PAQ

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 42 year

value: AllCells

value: ENCBS033NZI at ENCODE; https://www.encodeproject.org/ENCBS033NZI/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB782YLW)

description:
https://www.encodeproject.org/experiments/ENCSR823UQF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR823UQF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB782YLW

source_name: Homo sapiens male adult (42 years) activated effector memory CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS260VYS at ENCODE; https://www.encodeproject.org/ENCBS260VYS/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB699TLX)

description:
https://www.encodeproject.org/experiments/ENCSR828DHC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR828DHC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB699TLX

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: 33 year

value: ENCBS195FNX at ENCODE; https://www.encodeproject.org/ENCBS195FNX/


title: DNase-seq from suppressor macrophage (ENCLB696KAJ)

description:
https://www.encodeproject.org/experiments/ENCSR491ORH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR491ORH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB696KAJ

value: suppressor macrophage

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS505BVK at ENCODE; https://www.encodeproject.org/ENCBS505BVK/


title: Flow-FISH CRISPR screen from K562 (ENCLB242KVV)

description:
https://www.encodeproject.org/experiments/ENCSR822DCN/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR822DCN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB242KVV
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS026WVY at ENCODE; https://www.encodeproject.org/ENCBS026WVY/


title: DNase-seq from right lobe of liver (ENCLB252LAL)

description:
https://www.encodeproject.org/experiments/ENCSR824IRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR824IRT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB252LAL

source_name: Homo sapiens female adult (41 years) right lobe of liver tissue

value: right lobe of liver

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS187VSA at ENCODE; https://www.encodeproject.org/ENCBS187VSA/


title: DNase-seq from suppressor macrophage (ENCLB904UHO)

description:
https://www.encodeproject.org/experiments/ENCSR240YST/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR240YST
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB904UHO

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 24 hours

value: suppressor macrophage

value: primary cell

value: male

value: 40 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS391LRZ at ENCODE; https://www.encodeproject.org/ENCBS391LRZ/


title: DNase-seq from suppressor macrophage (ENCLB177XNQ)

description:
https://www.encodeproject.org/experiments/ENCSR451VKL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR451VKL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB177XNQ
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 0.1% dmso for 24 hours

value: adult

value: 24 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS762GFV at ENCODE; https://www.encodeproject.org/ENCBS762GFV/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB887KPL)

description:
https://www.encodeproject.org/experiments/ENCSR823UQF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR823UQF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887KPL

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS123MGI at ENCODE; https://www.encodeproject.org/ENCBS123MGI/


title: DNase-seq from suppressor macrophage (ENCLB792AKL)

description:
https://www.encodeproject.org/experiments/ENCSR229PWD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR229PWD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB792AKL
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 0.1% dmso for 0.5 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:0.5; duration_units:hour;

value: ENCBS979EMW at ENCODE; https://www.encodeproject.org/ENCBS979EMW/