title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB025BNU)

description:
https://www.encodeproject.org/experiments/ENCSR009BPM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR009BPM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB025BNU

value: CD4-positive, alpha-beta T cell

value: female

value: 34 year

value: ENCBS679DCF at ENCODE; https://www.encodeproject.org/ENCBS679DCF/


title: total RNA-seq from T-cell (ENCLB479XCU)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR351WPZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR351WPZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB479XCU

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Mus musculus

source_name: Mus musculus strain C57BL/6NJ T-cell primary cell

value: T-cell

value: primary cell

tag: biosample encode accession

tag: encode accession

tag: Sex

value: not collected

tag: dev stage

value: unknown

tag: age

tag: lab

value: Tim Reddy, Duke

tag: source

value: Maria Ciofani

tag: link

value: ENCBS256YLR at ENCODE; https://www.encodeproject.org/ENCBS256YLR/


title: DNase-seq from T-helper 1 cell (ENCLB463TUH)

description:
https://www.encodeproject.org/experiments/ENCSR008ZMN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR008ZMN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB463TUH

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (56 years) T-helper 1 primary cell

value: T-helper 1 cell

value: male

value: adult

value: 56 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS081QMW at ENCODE; https://www.encodeproject.org/ENCBS081QMW/


title: DNase-seq from immature natural killer cell (ENCLB998PVF)

description:
https://www.encodeproject.org/experiments/ENCSR008LND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR008LND
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB998PVF

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: 30 year

value: Shelly Heimfeld

value: ENCBS817BEB at ENCODE; https://www.encodeproject.org/ENCBS817BEB/


title: STARR-seq from activated T-helper 17 cell (ENCLB632GXM)

description:
https://www.encodeproject.org/experiments/ENCSR576KQE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR576KQE
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB632GXM
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated T-helper 17 primary cell genetically modified (episome) using transient transfection treated with 0.25 ug/mL anti-CD3e for 3 days, 1 ug/mL anti-CD28 for 3 days, 2 ug/mL anti-Interleukin-4 for 3 days, 2 ug/mL...

extract_protocol:
general protocol: https://www.encodeproject.org/documents/9113e79f-1a7a-4620-bdb7-3b6c7b2c259f/@@download/attachment/230726_STARR_OutputLibrary_Protocol_ENCODE.pdf
general protocol: https://www.encodeproject.org/documents/f24b0dae-edbf-4a7e-aeba-7b1d93c7508c/@@download/attachment/230726_STARR_Tcell_Nucleofection_Protocol_ENCODE.pdf
extraction method: Qiagen RNA extraction

value: activated T-helper 17 cell

value: primary cell

tag: treatments

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P08505; treatment_term_name:Interleukin-6; treatment_type:protein; duration:3; duration_units:day; treatment_term_id:UniProtKB:P01137; treatment_term_name:Transforming growth factor beta-1 proprotein; treatment_type:protein; duration:3; duration_units:day;

value: ENCBS282HUO at ENCODE; https://www.encodeproject.org/ENCBS282HUO/


title: total RNA-seq from T-helper 2 cell (ENCLB747UWU)

description:
https://www.encodeproject.org/experiments/ENCSR552NZO/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR552NZO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB747UWU

source_name: Mus musculus strain C57BL/6NJ T-helper 2 primary cell

value: T-helper 2 cell

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS508VED at ENCODE; https://www.encodeproject.org/ENCBS508VED/


title: total RNA-seq from T-helper 2 cell (ENCLB986FXD)

description:
https://www.encodeproject.org/experiments/ENCSR552NZO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR552NZO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB986FXD

value: ENCBS270IJZ at ENCODE; https://www.encodeproject.org/ENCBS270IJZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB488TIL)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB488TIL
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS464HIX at ENCODE; https://www.encodeproject.org/ENCBS464HIX/


title: Flow-FISH CRISPR screen from K562 (ENCLB567RHL)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB567RHL
size range: 200-210

value: ENCBS697SRR at ENCODE; https://www.encodeproject.org/ENCBS697SRR/


title: Flow-FISH CRISPR screen from K562 (ENCLB576RZJ)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB576RZJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB236TNX)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB236TNX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB798EQL)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB798EQL
size range: 200-210


title: ATAC-seq from T-helper 2 cell (ENCLB947LDO)

description:
https://www.encodeproject.org/experiments/ENCSR550NOH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR550NOH
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB947LDO

value: primary cell

value: ENCBS745ZIV at ENCODE; https://www.encodeproject.org/ENCBS745ZIV/


title: Flow-FISH CRISPR screen from K562 (ENCLB596VWY)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB596VWY
size range: 200-210


title: total RNA-seq from T-cell (ENCLB778EQF)

description:
https://www.encodeproject.org/experiments/ENCSR351WPZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR351WPZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB778EQF

value: T-cell

value: not collected

value: ENCBS076RCG at ENCODE; https://www.encodeproject.org/ENCBS076RCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB954TUH)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB954TUH
size range: 200-210

value: ENCBS601GFB at ENCODE; https://www.encodeproject.org/ENCBS601GFB/


title: Flow-FISH CRISPR screen from K562 (ENCLB677TCX)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB677TCX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB660FPX)

description:
https://www.encodeproject.org/experiments/ENCSR007DLQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR007DLQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB660FPX
size range: 200-210


title: total RNA-seq from T-helper 1 cell (ENCLB524NTJ)

description:
https://www.encodeproject.org/experiments/ENCSR314LMX/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR314LMX
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB524NTJ

source_name: Mus musculus strain C57BL/6NJ T-helper 1 primary cell

value: T-helper 1 cell

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS611QKW at ENCODE; https://www.encodeproject.org/ENCBS611QKW/


title: Flow-FISH CRISPR screen from K562 (ENCLB382SLT)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB382SLT
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS125KEF at ENCODE; https://www.encodeproject.org/ENCBS125KEF/


title: STARR-seq from activated T-helper 2 cell (ENCLB183BQU)

description:
https://www.encodeproject.org/experiments/ENCSR300TTB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR300TTB
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB183BQU
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated T-helper 2 primary cell genetically modified (episome) using transient transfection treated with 0.25 ug/mL anti-CD3e for 3 days, 1 ug/mL anti-CD28 for 3 days, 2 ug/mL anti-Interferon-gamma for 4 days, 10 ng...

value: activated T-helper 2 cell

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:4; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:day; treatment_term_id:UniProtKB:P07750; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:day;

value: ENCBS074YNO at ENCODE; https://www.encodeproject.org/ENCBS074YNO/


title: Flow-FISH CRISPR screen from K562 (ENCLB139TFG)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB139TFG
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB130WNR)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB130WNR
size range: 200-210

value: ENCBS601GFB at ENCODE; https://www.encodeproject.org/ENCBS601GFB/


title: total RNA-seq from T-cell (ENCLB112XEH)

description:
https://www.encodeproject.org/experiments/ENCSR515KJR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515KJR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB112XEH

value: T-cell

value: primary cell

value: not collected

value: ENCBS710MPE at ENCODE; https://www.encodeproject.org/ENCBS710MPE/


title: total RNA-seq from T-helper 2 cell (ENCLB473ILZ)

description:
https://www.encodeproject.org/experiments/ENCSR552NZO/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR552NZO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB473ILZ

value: T-helper 2 cell

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS288KPK at ENCODE; https://www.encodeproject.org/ENCBS288KPK/


title: STARR-seq from activated T-helper 2 cell (ENCLB135JWO)

description:
https://www.encodeproject.org/experiments/ENCSR300TTB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR300TTB
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB135JWO
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

value: ENCBS768EPQ at ENCODE; https://www.encodeproject.org/ENCBS768EPQ/


title: total RNA-seq from T-helper 1 cell (ENCLB266HVJ)

description:
https://www.encodeproject.org/experiments/ENCSR314LMX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR314LMX
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB266HVJ

value: T-helper 1 cell

value: ENCBS616AEA at ENCODE; https://www.encodeproject.org/ENCBS616AEA/


title: total RNA-seq from T-helper 1 cell (ENCLB384QII)

description:
https://www.encodeproject.org/experiments/ENCSR314LMX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR314LMX
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB384QII

value: ENCBS542LWK at ENCODE; https://www.encodeproject.org/ENCBS542LWK/


title: ATAC-seq from T-helper 2 cell (ENCLB348EJY)

description:
https://www.encodeproject.org/experiments/ENCSR550NOH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR550NOH
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB348EJY

value: ENCBS855UIP at ENCODE; https://www.encodeproject.org/ENCBS855UIP/


title: total RNA-seq from T-cell (ENCLB713VKY)

description:
https://www.encodeproject.org/experiments/ENCSR515KJR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR515KJR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB713VKY

value: ENCBS127XXX at ENCODE; https://www.encodeproject.org/ENCBS127XXX/


title: Flow-FISH CRISPR screen from K562 (ENCLB957DUZ)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB957DUZ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: total RNA-seq from T-cell (ENCLB600FXG)

description:
https://www.encodeproject.org/experiments/ENCSR515KJR/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR515KJR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB600FXG

value: T-cell

value: primary cell

value: not collected

value: unknown

value: ENCBS626HMC at ENCODE; https://www.encodeproject.org/ENCBS626HMC/


title: Flow-FISH CRISPR screen from K562 (ENCLB151CUK)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB151CUK
size range: 200-210

value: ENCBS125KEF at ENCODE; https://www.encodeproject.org/ENCBS125KEF/


title: Flow-FISH CRISPR screen from K562 (ENCLB658EFH)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB658EFH
size range: 200-210


title: total RNA-seq from T-helper 2 cell (ENCLB849XPH)

description:
https://www.encodeproject.org/experiments/ENCSR552NZO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR552NZO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB849XPH

value: T-helper 2 cell

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS595RVQ at ENCODE; https://www.encodeproject.org/ENCBS595RVQ/


title: ATAC-seq from T-cell (ENCLB328ODN)

description:
https://www.encodeproject.org/experiments/ENCSR285REQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR285REQ
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB328ODN

value: ENCBS480ZQE at ENCODE; https://www.encodeproject.org/ENCBS480ZQE/


title: total RNA-seq from T-cell (ENCLB063AVH)

description:
https://www.encodeproject.org/experiments/ENCSR283CSY/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR283CSY
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB063AVH

value: ENCBS014YSZ at ENCODE; https://www.encodeproject.org/ENCBS014YSZ/


title: ATAC-seq from T-cell (ENCLB571RSJ)

description:
https://www.encodeproject.org/experiments/ENCSR285REQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR285REQ
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB571RSJ

value: ENCBS944QGD at ENCODE; https://www.encodeproject.org/ENCBS944QGD/


title: Flow-FISH CRISPR screen from K562 (ENCLB637CNL)

description:
https://www.encodeproject.org/experiments/ENCSR004RLG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR004RLG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB637CNL
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS601GFB at ENCODE; https://www.encodeproject.org/ENCBS601GFB/


title: total RNA-seq from T-cell (ENCLB980OYZ)

description:
https://www.encodeproject.org/experiments/ENCSR283CSY/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR283CSY
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB980OYZ

value: T-cell

value: primary cell

value: ENCBS148AXI at ENCODE; https://www.encodeproject.org/ENCBS148AXI/


title: Flow-FISH CRISPR screen from K562 (ENCLB599OXO)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB599OXO
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS654KVI at ENCODE; https://www.encodeproject.org/ENCBS654KVI/


title: total RNA-seq from T-cell (ENCLB534LWD)

description:
https://www.encodeproject.org/experiments/ENCSR283CSY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR283CSY
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB534LWD

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS290SCS at ENCODE; https://www.encodeproject.org/ENCBS290SCS/


title: Flow-FISH CRISPR screen from K562 (ENCLB588UIW)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB588UIW
size range: 200-210

value: cell line

value: ENCBS636QKG at ENCODE; https://www.encodeproject.org/ENCBS636QKG/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB489XER)

description:
https://www.encodeproject.org/experiments/ENCSR003CJK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR003CJK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB489XER

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS115TNW at ENCODE; https://www.encodeproject.org/ENCBS115TNW/


title: total RNA-seq from T-cell (ENCLB644CZB)

description:
https://www.encodeproject.org/experiments/ENCSR283CSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR283CSY
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB644CZB

value: T-cell

value: primary cell

value: ENCBS270IGE at ENCODE; https://www.encodeproject.org/ENCBS270IGE/


title: Flow-FISH CRISPR screen from K562 (ENCLB500MTM)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB500MTM
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB863SYO)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB863SYO
size range: 200-210

value: cell line

value: ENCBS654KVI at ENCODE; https://www.encodeproject.org/ENCBS654KVI/


title: Flow-FISH CRISPR screen from K562 (ENCLB021GFR)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB021GFR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB478YKW)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB478YKW
size range: 200-210


title: ATAC-seq from T-helper 1 cell (ENCLB679DUQ)

description:
https://www.encodeproject.org/experiments/ENCSR497DZG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR497DZG
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB679DUQ

value: T-helper 1 cell

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS660OTB at ENCODE; https://www.encodeproject.org/ENCBS660OTB/


title: total RNA-seq from T-helper 2 cell (ENCLB313RIO)

description:
https://www.encodeproject.org/experiments/ENCSR498SYM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR498SYM
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB313RIO

value: T-helper 2 cell

value: ENCBS929GYG at ENCODE; https://www.encodeproject.org/ENCBS929GYG/


title: total RNA-seq from T-helper 2 cell (ENCLB563YEU)

description:
https://www.encodeproject.org/experiments/ENCSR498SYM/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR498SYM
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB563YEU

value: primary cell

value: ENCBS621QMB at ENCODE; https://www.encodeproject.org/ENCBS621QMB/


title: Flow-FISH CRISPR screen from K562 (ENCLB744JLX)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB744JLX
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS554NLP at ENCODE; https://www.encodeproject.org/ENCBS554NLP/


title: Flow-FISH CRISPR screen from K562 (ENCLB033KDI)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB033KDI
size range: 200-210

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS636QKG at ENCODE; https://www.encodeproject.org/ENCBS636QKG/


title: total RNA-seq from T-helper 2 cell (ENCLB168RYT)

description:
https://www.encodeproject.org/experiments/ENCSR498SYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR498SYM
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB168RYT

value: ENCBS298WAB at ENCODE; https://www.encodeproject.org/ENCBS298WAB/


title: ATAC-seq from T-helper 1 cell (ENCLB982RNF)

description:
https://www.encodeproject.org/experiments/ENCSR497DZG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR497DZG
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB982RNF

value: T-helper 1 cell

value: not collected

value: ENCBS261VCT at ENCODE; https://www.encodeproject.org/ENCBS261VCT/


title: total RNA-seq from T-helper 17 cell (ENCLB627IDO)

description:
https://www.encodeproject.org/experiments/ENCSR496AHR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496AHR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB627IDO

source_name: Mus musculus strain C57BL/6NJ T-helper 17 primary cell

value: T-helper 17 cell

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS815ZSP at ENCODE; https://www.encodeproject.org/ENCBS815ZSP/


title: Flow-FISH CRISPR screen from K562 (ENCLB900AWH)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB900AWH
size range: 200-210

value: cell line

value: ATCC

value: ENCBS735YXK at ENCODE; https://www.encodeproject.org/ENCBS735YXK/


title: total RNA-seq from T-helper 17 cell (ENCLB885OTW)

description:
https://www.encodeproject.org/experiments/ENCSR496AHR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR496AHR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB885OTW

value: primary cell

value: ENCBS265NAE at ENCODE; https://www.encodeproject.org/ENCBS265NAE/


title: Flow-FISH CRISPR screen from K562 (ENCLB810CHP)

description:
https://www.encodeproject.org/experiments/ENCSR003ALA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR003ALA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB810CHP
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year


title: total RNA-seq from T-helper 2 cell (ENCLB195SAW)

description:
https://www.encodeproject.org/experiments/ENCSR498SYM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR498SYM
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB195SAW

value: T-helper 2 cell

value: ENCBS879YCT at ENCODE; https://www.encodeproject.org/ENCBS879YCT/


title: Flow-FISH CRISPR screen from K562 (ENCLB098EOH)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB098EOH
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB976SPG)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB976SPG
size range: 200-210


title: total RNA-seq from T-helper 17 cell (ENCLB952ZPD)

description:
https://www.encodeproject.org/experiments/ENCSR496AHR/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR496AHR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB952ZPD

value: T-helper 17 cell

value: not collected

value: ENCBS146YWZ at ENCODE; https://www.encodeproject.org/ENCBS146YWZ/


title: total RNA-seq from T-helper 17 cell (ENCLB919VIA)

description:
https://www.encodeproject.org/experiments/ENCSR496AHR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR496AHR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB919VIA

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS165GTS at ENCODE; https://www.encodeproject.org/ENCBS165GTS/


title: Flow-FISH CRISPR screen from K562 (ENCLB921RTB)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB921RTB
size range: 200-210

value: cell line

value: ATCC

value: ENCBS554NLP at ENCODE; https://www.encodeproject.org/ENCBS554NLP/


title: Flow-FISH CRISPR screen from K562 (ENCLB506PQR)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB506PQR
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB203MOR)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB203MOR
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB267OYW)

description:
https://www.encodeproject.org/experiments/ENCSR002RHQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR002RHQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB267OYW
size range: 200-210

value: adult

value: ENCBS735YXK at ENCODE; https://www.encodeproject.org/ENCBS735YXK/


title: total RNA-seq from T-helper 17 cell (ENCLB181EWX)

description:
https://www.encodeproject.org/experiments/ENCSR467PMU/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR467PMU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB181EWX

value: primary cell

value: ENCBS344WFM at ENCODE; https://www.encodeproject.org/ENCBS344WFM/


title: total RNA-seq from T-helper 2 cell (ENCLB731OEX)

description:
https://www.encodeproject.org/experiments/ENCSR243YLR/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR243YLR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB731OEX

value: T-helper 2 cell

value: ENCBS064ONF at ENCODE; https://www.encodeproject.org/ENCBS064ONF/


title: total RNA-seq from T-helper 2 cell (ENCLB579JOE)

description:
https://www.encodeproject.org/experiments/ENCSR243YLR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR243YLR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB579JOE

value: not collected

value: ENCBS136BVE at ENCODE; https://www.encodeproject.org/ENCBS136BVE/


title: total RNA-seq from T-helper 2 cell (ENCLB063RNP)

description:
https://www.encodeproject.org/experiments/ENCSR243YLR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR243YLR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB063RNP

value: unknown

value: ENCBS456VTF at ENCODE; https://www.encodeproject.org/ENCBS456VTF/


title: total RNA-seq from T-cell (ENCLB964RFV)

description:
https://www.encodeproject.org/experiments/ENCSR515KJR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR515KJR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB964RFV

value: T-cell

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS789OHA at ENCODE; https://www.encodeproject.org/ENCBS789OHA/


title: STARR-seq from activated T-helper 17 cell (ENCLB616RNV)

description:
https://www.encodeproject.org/experiments/ENCSR417EQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR417EQC
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR613PXL
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB616RNV
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

value: activated T-helper 17 cell

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P08505; treatment_term_name:Interleukin-6; treatment_type:protein; duration:3; duration_units:day; treatment_term_id:UniProtKB:P01137; treatment_term_name:Transforming growth factor beta-1 proprotein; treatment_type:protein; duration:3; duration_units:day;

value: ENCBS674LEN at ENCODE; https://www.encodeproject.org/ENCBS674LEN/


title: total RNA-seq from T-helper 1 cell (ENCLB401VVF)

description:
https://www.encodeproject.org/experiments/ENCSR439QXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR439QXU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB401VVF

value: T-helper 1 cell

value: ENCBS141UYB at ENCODE; https://www.encodeproject.org/ENCBS141UYB/


title: total RNA-seq from T-helper 1 cell (ENCLB713NKE)

description:
https://www.encodeproject.org/experiments/ENCSR439QXU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR439QXU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB713NKE

value: primary cell

value: ENCBS257KCT at ENCODE; https://www.encodeproject.org/ENCBS257KCT/


title: total RNA-seq from T-helper 17 cell (ENCLB697NJK)

description:
https://www.encodeproject.org/experiments/ENCSR467PMU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR467PMU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB697NJK

value: T-helper 17 cell

value: ENCBS554PRK at ENCODE; https://www.encodeproject.org/ENCBS554PRK/


title: total RNA-seq from T-helper 2 cell (ENCLB945TGC)

description:
https://www.encodeproject.org/experiments/ENCSR243YLR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR243YLR
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB945TGC

value: T-helper 2 cell

value: not collected

value: ENCBS198XGK at ENCODE; https://www.encodeproject.org/ENCBS198XGK/


title: total RNA-seq from T-helper 17 cell (ENCLB870VFR)

description:
https://www.encodeproject.org/experiments/ENCSR467PMU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR467PMU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB870VFR

value: unknown

value: ENCBS530CDD at ENCODE; https://www.encodeproject.org/ENCBS530CDD/


title: total RNA-seq from T-helper 17 cell (ENCLB229YUJ)

description:
https://www.encodeproject.org/experiments/ENCSR467PMU/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR467PMU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB229YUJ

value: Tim Reddy, Duke

value: ENCBS827ZPS at ENCODE; https://www.encodeproject.org/ENCBS827ZPS/


title: total RNA-seq from T-helper 2 cell (ENCLB114MND)

description:
https://www.encodeproject.org/experiments/ENCSR211JWD/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR211JWD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB114MND

value: Maria Ciofani

value: ENCBS550YNX at ENCODE; https://www.encodeproject.org/ENCBS550YNX/


title: total RNA-seq from T-helper 2 cell (ENCLB408NPM)

description:
https://www.encodeproject.org/experiments/ENCSR211JWD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR211JWD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB408NPM

value: ENCBS765DUC at ENCODE; https://www.encodeproject.org/ENCBS765DUC/


title: STARR-seq from activated T-helper 17 cell (ENCLB670EMP)

description:
https://www.encodeproject.org/experiments/ENCSR417EQC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR417EQC
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR613PXL
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB670EMP
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

value: activated T-helper 17 cell

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P08505; treatment_term_name:Interleukin-6; treatment_type:protein; duration:3; duration_units:day; treatment_term_id:UniProtKB:P01137; treatment_term_name:Transforming growth factor beta-1 proprotein; treatment_type:protein; duration:3; duration_units:day;

value: ENCBS069IQK at ENCODE; https://www.encodeproject.org/ENCBS069IQK/


title: total RNA-seq from T-helper 2 cell (ENCLB159CZS)

description:
https://www.encodeproject.org/experiments/ENCSR211JWD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR211JWD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB159CZS

value: primary cell

value: ENCBS641UCT at ENCODE; https://www.encodeproject.org/ENCBS641UCT/


title: total RNA-seq from T-cell (ENCLB074FZQ)

description:
https://www.encodeproject.org/experiments/ENCSR402EKP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR402EKP
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB074FZQ

value: T-cell

value: ENCBS329HQI at ENCODE; https://www.encodeproject.org/ENCBS329HQI/


title: STARR-seq from activated T-helper 17 cell (ENCLB773SFM)

description:
https://www.encodeproject.org/experiments/ENCSR417EQC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR417EQC
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR613PXL
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB773SFM
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

value: ENCBS199RTT at ENCODE; https://www.encodeproject.org/ENCBS199RTT/


title: total RNA-seq from T-helper 1 cell (ENCLB669MUO)

description:
https://www.encodeproject.org/experiments/ENCSR439QXU/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR439QXU
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB669MUO

value: T-helper 1 cell

value: not collected

value: ENCBS500FXH at ENCODE; https://www.encodeproject.org/ENCBS500FXH/


title: total RNA-seq from T-cell (ENCLB120ODN)

description:
https://www.encodeproject.org/experiments/ENCSR402EKP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR402EKP
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB120ODN

value: unknown

value: ENCBS760TFO at ENCODE; https://www.encodeproject.org/ENCBS760TFO/


title: total RNA-seq from T-helper 2 cell (ENCLB173IYN)

description:
https://www.encodeproject.org/experiments/ENCSR986CSD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR986CSD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB173IYN

value: T-helper 2 cell

value: Tim Reddy, Duke

value: ENCBS690LXV at ENCODE; https://www.encodeproject.org/ENCBS690LXV/


title: total RNA-seq from T-cell (ENCLB257CYK)

description:
https://www.encodeproject.org/experiments/ENCSR402EKP/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR402EKP
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB257CYK

value: Maria Ciofani

value: ENCBS993HWA at ENCODE; https://www.encodeproject.org/ENCBS993HWA/


title: total RNA-seq from T-helper 2 cell (ENCLB845LWD)

description:
https://www.encodeproject.org/experiments/ENCSR211JWD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR211JWD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB845LWD

value: ENCBS791XUU at ENCODE; https://www.encodeproject.org/ENCBS791XUU/


title: total RNA-seq from T-helper 2 cell (ENCLB413TZO)

description:
https://www.encodeproject.org/experiments/ENCSR986CSD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR986CSD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB413TZO

value: ENCBS600ACO at ENCODE; https://www.encodeproject.org/ENCBS600ACO/


title: total RNA-seq from T-helper 2 cell (ENCLB149RFU)

description:
https://www.encodeproject.org/experiments/ENCSR986CSD/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR986CSD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB149RFU

value: primary cell

value: ENCBS309DCS at ENCODE; https://www.encodeproject.org/ENCBS309DCS/


title: DNase-seq from liver (ENCLB508TUP)

description:
https://www.encodeproject.org/experiments/ENCSR339EMU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR339EMU
assay title: DNase-seq
assembly: mm10
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB508TUP

source_name: Mus musculus strain C57BL/6J liver tissue

value: liver

value: tissue

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS067HER at ENCODE; https://www.encodeproject.org/ENCBS067HER/


title: total RNA-seq from regulatory T cell (ENCLB626PTR)

description:
https://www.encodeproject.org/experiments/ENCSR980GQZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR980GQZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB626PTR

source_name: Mus musculus strain C57BL/6NJ regulatory T primary cell

value: regulatory T cell

value: not collected

value: ENCBS893PGH at ENCODE; https://www.encodeproject.org/ENCBS893PGH/


title: total RNA-seq from regulatory T cell (ENCLB315YZD)

description:
https://www.encodeproject.org/experiments/ENCSR965WUE/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR965WUE
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB315YZD

value: unknown

value: ENCBS301IZI at ENCODE; https://www.encodeproject.org/ENCBS301IZI/


title: total RNA-seq from regulatory T cell (ENCLB393FKJ)

description:
https://www.encodeproject.org/experiments/ENCSR980GQZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR980GQZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB393FKJ

value: Tim Reddy, Duke

value: ENCBS317XRM at ENCODE; https://www.encodeproject.org/ENCBS317XRM/


title: total RNA-seq from regulatory T cell (ENCLB686TTK)

description:
https://www.encodeproject.org/experiments/ENCSR980GQZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR980GQZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB686TTK

value: Maria Ciofani

value: ENCBS644PPP at ENCODE; https://www.encodeproject.org/ENCBS644PPP/


title: total RNA-seq from T-cell (ENCLB314HAA)

description:
https://www.encodeproject.org/experiments/ENCSR402EKP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR402EKP
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB314HAA

value: T-cell

value: ENCBS642WQA at ENCODE; https://www.encodeproject.org/ENCBS642WQA/


title: total RNA-seq from regulatory T cell (ENCLB763MEI)

description:
https://www.encodeproject.org/experiments/ENCSR980GQZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR980GQZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB763MEI

value: primary cell

value: ENCBS832VAV at ENCODE; https://www.encodeproject.org/ENCBS832VAV/


title: DNase-seq from B cell (ENCLB043IZM)

description:
https://www.encodeproject.org/experiments/ENCSR500IJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR500IJD
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043IZM

source_name: Mus musculus strain C57BL/6J B primary cell

value: B cell

value: ENCBS415JHV at ENCODE; https://www.encodeproject.org/ENCBS415JHV/


title: DNase-seq from cerebellum (ENCLB947NDA)

description:
https://www.encodeproject.org/experiments/ENCSR288OXC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR288OXC
assay title: DNase-seq
assembly: mm10
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB947NDA

source_name: Mus musculus strain B6CASTF1/J female adult (18-20 months) cerebellum tissue

value: cerebellum

value: tissue

tag: description

value: B6Cast F1 DPN18-20months

value: female

value: adult

value: 18-20 month

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS062MAQ at ENCODE; https://www.encodeproject.org/ENCBS062MAQ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: total RNA-seq from regulatory T cell (ENCLB439KYY)

description:
https://www.encodeproject.org/experiments/ENCSR965WUE/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR965WUE
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB439KYY

value: regulatory T cell

value: not collected

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS686BPZ at ENCODE; https://www.encodeproject.org/ENCBS686BPZ/


title: DNase-seq from liver (ENCLB748SXN)

description:
https://www.encodeproject.org/experiments/ENCSR274WTH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274WTH
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB748SXN

value: liver

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS543EBZ at ENCODE; https://www.encodeproject.org/ENCBS543EBZ/


title: total RNA-seq from T-helper 17 cell (ENCLB791HJL)

description:
https://www.encodeproject.org/experiments/ENCSR973CTO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR973CTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB791HJL

value: T-helper 17 cell

value: primary cell

value: ENCBS442GGB at ENCODE; https://www.encodeproject.org/ENCBS442GGB/


title: total RNA-seq from T-helper 17 cell (ENCLB553WFM)

description:
https://www.encodeproject.org/experiments/ENCSR973CTO/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR973CTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB553WFM

value: ENCBS341QQE at ENCODE; https://www.encodeproject.org/ENCBS341QQE/


title: total RNA-seq from T-helper 2 cell (ENCLB745HTM)

description:
https://www.encodeproject.org/experiments/ENCSR986CSD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR986CSD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB745HTM

value: T-helper 2 cell

value: ENCBS489OLI at ENCODE; https://www.encodeproject.org/ENCBS489OLI/


title: total RNA-seq from regulatory T cell (ENCLB313VKJ)

description:
https://www.encodeproject.org/experiments/ENCSR965WUE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR965WUE
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB313VKJ

value: ENCBS348RRB at ENCODE; https://www.encodeproject.org/ENCBS348RRB/


title: total RNA-seq from T-helper 17 cell (ENCLB761WNS)

description:
https://www.encodeproject.org/experiments/ENCSR954LXW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR954LXW
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB761WNS

value: ENCBS305PDJ at ENCODE; https://www.encodeproject.org/ENCBS305PDJ/


title: total RNA-seq from T-helper 17 cell (ENCLB828NXY)

description:
https://www.encodeproject.org/experiments/ENCSR954LXW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR954LXW
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB828NXY

value: not collected

value: ENCBS099FXI at ENCODE; https://www.encodeproject.org/ENCBS099FXI/


title: DNase-seq from liver (ENCLB069AKE)

description:
https://www.encodeproject.org/experiments/ENCSR597WUD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597WUD
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB069AKE

value: tissue

value: unknown

value: ENCBS436JKB at ENCODE; https://www.encodeproject.org/ENCBS436JKB/


title: total RNA-seq from T-helper 17 cell (ENCLB065UCU)

description:
https://www.encodeproject.org/experiments/ENCSR954LXW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR954LXW
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB065UCU

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS434SFX at ENCODE; https://www.encodeproject.org/ENCBS434SFX/


title: total RNA-seq from T-helper 17 cell (ENCLB643AEP)

description:
https://www.encodeproject.org/experiments/ENCSR973CTO/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR973CTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB643AEP

value: ENCBS246MOG at ENCODE; https://www.encodeproject.org/ENCBS246MOG/


title: total RNA-seq from T-helper 17 cell (ENCLB053KWG)

description:
https://www.encodeproject.org/experiments/ENCSR954LXW/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR954LXW
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB053KWG

value: T-helper 17 cell

value: ENCBS232VMT at ENCODE; https://www.encodeproject.org/ENCBS232VMT/


title: DNase-seq from spleen (ENCLB956BLN)

description:
https://www.encodeproject.org/experiments/ENCSR251IRC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR251IRC
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB956BLN

source_name: Mus musculus strain B6CASTF1/J female postnatal (4 days) spleen tissue

value: spleen

tag: note

value: B6Cast F1 PND4 Female 05 spleen for Altius Stam biobank

value: female

value: postnatal

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS698XMI at ENCODE; https://www.encodeproject.org/ENCBS698XMI/


title: DNase-seq from liver (ENCLB601PZT)

description:
https://www.encodeproject.org/experiments/ENCSR441WQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR441WQP
assay title: DNase-seq
assembly: mm10
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB601PZT

value: liver

value: tissue

value: not collected

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS512CUM at ENCODE; https://www.encodeproject.org/ENCBS512CUM/


title: STARR-seq from activated T-helper 1 cell (ENCLB017ISY)

description:
https://www.encodeproject.org/experiments/ENCSR945FEC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR945FEC
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB017ISY
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated T-helper 1 primary cell genetically modified (episome) using transient transfection treated with 10 ng/mL Interleukin-2 for 4 days, 0.25 ug/mL anti-CD3e for 3 days, 10 ng/mL Interleukin-12 p70 for 4 days, 1 ...

value: activated T-helper 1 cell

value: primary cell

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:day; treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:Interleukin-12 p70; treatment_type:protein; duration:4; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:4; duration_units:day;

value: ENCBS068UTF at ENCODE; https://www.encodeproject.org/ENCBS068UTF/


title: total RNA-seq from T-helper 17 cell (ENCLB766WVF)

description:
https://www.encodeproject.org/experiments/ENCSR973CTO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR973CTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB766WVF

value: T-helper 17 cell

value: ENCBS355YQD at ENCODE; https://www.encodeproject.org/ENCBS355YQD/


title: DNase-seq from left cerebral cortex (ENCLB819IXF)

description:
https://www.encodeproject.org/experiments/ENCSR414DJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR414DJM
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB819IXF

source_name: Mus musculus strain B6CASTF1/J male postnatal (4 days) left cerebral cortex tissue

value: left cerebral cortex

value: B6Cast F1 PND4 Male 06 left cerebral cortex for Altius Stam biobank

value: male

value: postnatal

value: 4 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS189KON at ENCODE; https://www.encodeproject.org/ENCBS189KON/


title: total RNA-seq from T-cell (ENCLB677XRP)

description:
https://www.encodeproject.org/experiments/ENCSR907YLF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR907YLF
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB677XRP

source_name: Mus musculus strain C57BL/6NJ T-cell primary cell

value: T-cell

value: not collected

value: ENCBS020HCU at ENCODE; https://www.encodeproject.org/ENCBS020HCU/


title: STARR-seq from activated T-helper 1 cell (ENCLB715IJM)

description:
https://www.encodeproject.org/experiments/ENCSR945FEC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR945FEC
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB715IJM
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg
instrument models: Illumina NovaSeq 6000,Illumina NextSeq 500

source_name: Mus musculus strain C57BL/6NJ activated T-helper 1 primary cell genetically modified (episome) using transient transfection treated with 0.25 ug/mL anti-CD3e for 3 days, 1 ug/mL anti-CD28 for 3 days, 2 ug/mL anti-Interleukin-4 for 4 days, 10 ng/mL...

value: activated T-helper 1 cell

value: primary cell

value: unknown

value: Tim Reddy, Duke

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:4; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:day; treatment_term_name:Interleukin-12 p70; treatment_type:protein; duration:4; duration_units:day;

value: ENCBS108NOR at ENCODE; https://www.encodeproject.org/ENCBS108NOR/


title: DNase-seq from B cell (ENCLB905GTK)

description:
https://www.encodeproject.org/experiments/ENCSR415DLI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR415DLI
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB905GTK

value: B cell

value: John Stamatoyannopoulos, UW

value: Mark Groudine

value: ENCBS567REB at ENCODE; https://www.encodeproject.org/ENCBS567REB/


title: DNase-seq from cerebellum (ENCLB565RJY)

description:
https://www.encodeproject.org/experiments/ENCSR732DJI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR732DJI
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB565RJY

source_name: Mus musculus strain B6CASTF1/J female (25 days) cerebellum tissue

value: cerebellum

value: tissue

value: B6Cast F1 PND25 Female 06 cerebellum for Altius Stam core

value: female

value: 25 day

value: ENCBS703LGF at ENCODE; https://www.encodeproject.org/ENCBS703LGF/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from liver (ENCLB930AQT)

description:
https://www.encodeproject.org/experiments/ENCSR198EIO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR198EIO
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB930AQT

value: liver

value: not collected

value: ENCBS347LPI at ENCODE; https://www.encodeproject.org/ENCBS347LPI/


title: total RNA-seq from T-cell (ENCLB986KDN)

description:
https://www.encodeproject.org/experiments/ENCSR907YLF/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR907YLF
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB986KDN

value: T-cell

value: primary cell

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS369PCP at ENCODE; https://www.encodeproject.org/ENCBS369PCP/


title: DNase-seq from urinary bladder (ENCLB313XRU)

description:
https://www.encodeproject.org/experiments/ENCSR160PRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR160PRT
assay title: DNase-seq
assembly: mm10
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB313XRU

source_name: Mus musculus strain B6CASTF1/J female postnatal (10 days) urinary bladder tissue

value: urinary bladder

value: B6Cast F1 PND10 Female 06 urinary bladder for Altius Stam biobank

value: postnatal

value: 10 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS402YVT at ENCODE; https://www.encodeproject.org/ENCBS402YVT/


title: STARR-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB988KYX)

description:
https://www.encodeproject.org/experiments/ENCSR763SPB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR763SPB
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB988KYX
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell genetically modified (episome) using transient transfection treated with 0.25 ug/mL anti-CD3e for 3 days, 1 ug/mL anti-CD28 for 3 days, 2 ug/...

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:3; duration_units:day; treatment_term_id:UniProtKB:P01137; treatment_term_name:Transforming growth factor beta-1 proprotein; treatment_type:protein; duration:3; duration_units:day;

value: ENCBS348XSD at ENCODE; https://www.encodeproject.org/ENCBS348XSD/


title: total RNA-seq from regulatory T cell (ENCLB147XVU)

description:
https://www.encodeproject.org/experiments/ENCSR806BUK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR806BUK
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB147XVU

value: regulatory T cell

value: not collected

value: ENCBS499VTC at ENCODE; https://www.encodeproject.org/ENCBS499VTC/


title: total RNA-seq from regulatory T cell (ENCLB358WVW)

description:
https://www.encodeproject.org/experiments/ENCSR806BUK/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR806BUK
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB358WVW

value: primary cell

value: ENCBS060HYM at ENCODE; https://www.encodeproject.org/ENCBS060HYM/


title: total RNA-seq from T-cell (ENCLB033RQO)

description:
https://www.encodeproject.org/experiments/ENCSR907YLF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR907YLF
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB033RQO

value: T-cell

value: unknown

value: Tim Reddy, Duke

value: ENCBS525MZF at ENCODE; https://www.encodeproject.org/ENCBS525MZF/


title: ATAC-seq from regulatory T cell (ENCLB190GZI)

description:
https://www.encodeproject.org/experiments/ENCSR844TIU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR844TIU
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB190GZI

value: Maria Ciofani

value: ENCBS206FNH at ENCODE; https://www.encodeproject.org/ENCBS206FNH/


title: total RNA-seq from T-cell (ENCLB083FHR)

description:
https://www.encodeproject.org/experiments/ENCSR907YLF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR907YLF
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB083FHR

value: ENCBS522GCR at ENCODE; https://www.encodeproject.org/ENCBS522GCR/


title: total RNA-seq from T-cell (ENCLB473IDY)

description:
https://www.encodeproject.org/experiments/ENCSR751BRT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR751BRT
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB473IDY

value: ENCBS911YRH at ENCODE; https://www.encodeproject.org/ENCBS911YRH/


title: total RNA-seq from T-cell (ENCLB622ZJU)

description:
https://www.encodeproject.org/experiments/ENCSR751BRT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR751BRT
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB622ZJU

value: ENCBS990ACU at ENCODE; https://www.encodeproject.org/ENCBS990ACU/


title: STARR-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB266VSL)

description:
https://www.encodeproject.org/experiments/ENCSR763SPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR763SPB
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB266VSL
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell genetically modified (episome) using transient transfection treated with 2 ug/mL anti-Interferon-gamma for 3 days, 10 ng/mL Interleukin-2 for...

value: treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:3; duration_units:day; treatment_term_id:UniProtKB:P01137; treatment_term_name:Transforming growth factor beta-1 proprotein; treatment_type:protein; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day;

value: ENCBS931EKU at ENCODE; https://www.encodeproject.org/ENCBS931EKU/


title: total RNA-seq from T-cell (ENCLB400ETB)

description:
https://www.encodeproject.org/experiments/ENCSR751BRT/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR751BRT
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB400ETB

value: ENCBS636OIW at ENCODE; https://www.encodeproject.org/ENCBS636OIW/


title: STARR-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB709UDK)

description:
https://www.encodeproject.org/experiments/ENCSR744ZON/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR744ZON
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB709UDK
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated naive CD4-positive, alpha-beta T primary cell genetically modified (episome) using transient transfection treated with 0.25 ug/mL anti-CD3e for 3 days, 1 ug/mL anti-CD28 for 3 days, 2 ug/mL anti-Interleukin-...

value: treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:3; duration_units:day;

value: ENCBS258SYH at ENCODE; https://www.encodeproject.org/ENCBS258SYH/


title: total RNA-seq from T-helper 17 cell (ENCLB600MTB)

description:
https://www.encodeproject.org/experiments/ENCSR751OOH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR751OOH
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB600MTB

value: T-helper 17 cell

value: not collected

value: ENCBS069ZEN at ENCODE; https://www.encodeproject.org/ENCBS069ZEN/


title: total RNA-seq from regulatory T cell (ENCLB246UNX)

description:
https://www.encodeproject.org/experiments/ENCSR720CUD/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR720CUD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB246UNX

value: regulatory T cell

value: primary cell

value: ENCBS298CAU at ENCODE; https://www.encodeproject.org/ENCBS298CAU/


title: DNase-seq from right cerebral cortex (ENCLB297LNF)

description:
https://www.encodeproject.org/experiments/ENCSR103IUP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR103IUP
assay title: DNase-seq
assembly: mm10
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB297LNF

source_name: Mus musculus strain B6CASTF1/J female postnatal (14 days) right cerebral cortex tissue

value: right cerebral cortex

value: tissue

value: B6Cast F1 PND14 Female 06 right cerebral cortex for Altius Stam biobank

value: female

value: postnatal

value: 14 day

value: Barbara Wold, Caltech

value: The Jackson Laboratory

value: ENCBS571QSB at ENCODE; https://www.encodeproject.org/ENCBS571QSB/


title: total RNA-seq from regulatory T cell (ENCLB973KNW)

description:
https://www.encodeproject.org/experiments/ENCSR806BUK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR806BUK
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB973KNW

value: unknown

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS282YXO at ENCODE; https://www.encodeproject.org/ENCBS282YXO/


title: ATAC-seq from regulatory T cell (ENCLB265DZB)

description:
https://www.encodeproject.org/experiments/ENCSR844TIU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR844TIU
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB265DZB

value: not collected

value: ENCBS159UJV at ENCODE; https://www.encodeproject.org/ENCBS159UJV/


title: total RNA-seq from T-helper 17 cell (ENCLB593WNC)

description:
https://www.encodeproject.org/experiments/ENCSR751OOH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR751OOH
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB593WNC

value: T-helper 17 cell

value: primary cell

value: ENCBS774UEG at ENCODE; https://www.encodeproject.org/ENCBS774UEG/


title: total RNA-seq from T-helper 17 cell (ENCLB890VNL)

description:
https://www.encodeproject.org/experiments/ENCSR751OOH/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR751OOH
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB890VNL

value: ENCBS333KEN at ENCODE; https://www.encodeproject.org/ENCBS333KEN/


title: total RNA-seq from T-helper 17 cell (ENCLB965ZCC)

description:
https://www.encodeproject.org/experiments/ENCSR751OOH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR751OOH
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB965ZCC

value: ENCBS635ZEP at ENCODE; https://www.encodeproject.org/ENCBS635ZEP/


title: total RNA-seq from T-cell (ENCLB203GCZ)

description:
https://www.encodeproject.org/experiments/ENCSR751BRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR751BRT
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB203GCZ

value: T-cell

value: ENCBS144EBG at ENCODE; https://www.encodeproject.org/ENCBS144EBG/


title: STARR-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB170YAK)

description:
https://www.encodeproject.org/experiments/ENCSR744ZON/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR744ZON
assay title: STARR-seq
assembly: mm10
possible controls: ENCSR666QWV
encode release date: 2023-10-05
lab: Tim Reddy, Duke
library encode accession: ENCLB170YAK
size range: 200-400
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Mus musculus strain C57BL/6NJ activated naive CD4-positive, alpha-beta T primary cell genetically modified (episome) using transient transfection treated with 2 ug/mL anti-Interferon-gamma for 3 days, 10 ng/mL Interleukin-2 for 3 days, 2 ug/mL ant...

value: treatment_term_name:anti-Interferon-gamma; treatment_type:antibody; duration:3; duration_units:day; treatment_term_id:UniProtKB:P04351; treatment_term_name:Interleukin-2; treatment_type:protein; duration:3; duration_units:day; treatment_term_name:anti-Interleukin-4; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD3e; treatment_type:antibody; duration:3; duration_units:day; treatment_term_name:anti-CD28; treatment_type:antibody; duration:3; duration_units:day;

value: ENCBS851XMW at ENCODE; https://www.encodeproject.org/ENCBS851XMW/


title: total RNA-seq from regulatory T cell (ENCLB912MUX)

description:
https://www.encodeproject.org/experiments/ENCSR806BUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR806BUK
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB912MUX

value: regulatory T cell

value: ENCBS909ACK at ENCODE; https://www.encodeproject.org/ENCBS909ACK/


title: ATAC-seq from T-helper 17 cell (ENCLB474VLA)

description:
https://www.encodeproject.org/experiments/ENCSR639PPN/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR639PPN
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB474VLA

source_name: Mus musculus strain C57BL/6NJ T-helper 17 primary cell

value: unknown

value: ENCBS959GLF at ENCODE; https://www.encodeproject.org/ENCBS959GLF/


title: total RNA-seq from T-helper 17 cell (ENCLB200KOY)

description:
https://www.encodeproject.org/experiments/ENCSR169MYZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR169MYZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB200KOY

value: Tim Reddy, Duke

value: Maria Ciofani

value: ENCBS498LGL at ENCODE; https://www.encodeproject.org/ENCBS498LGL/


title: ATAC-seq from T-helper 17 cell (ENCLB798GSA)

description:
https://www.encodeproject.org/experiments/ENCSR639PPN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR639PPN
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB798GSA

value: not collected

value: ENCBS227YAI at ENCODE; https://www.encodeproject.org/ENCBS227YAI/


title: total RNA-seq from T-helper 17 cell (ENCLB705YCS)

description:
https://www.encodeproject.org/experiments/ENCSR169MYZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR169MYZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB705YCS

value: T-helper 17 cell

value: primary cell

value: ENCBS833KWY at ENCODE; https://www.encodeproject.org/ENCBS833KWY/


title: total RNA-seq from T-helper 1 cell (ENCLB623EEI)

description:
https://www.encodeproject.org/experiments/ENCSR600QUH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR600QUH
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB623EEI

source_name: Mus musculus strain C57BL/6NJ T-helper 1 primary cell

value: T-helper 1 cell

value: ENCBS852NTA at ENCODE; https://www.encodeproject.org/ENCBS852NTA/


title: ATAC-seq from T-helper 17 cell (ENCLB426DNG)

description:
https://www.encodeproject.org/experiments/ENCSR639PPN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR639PPN
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB426DNG

value: ENCBS269BPO at ENCODE; https://www.encodeproject.org/ENCBS269BPO/


title: total RNA-seq from regulatory T cell (ENCLB561GQK)

description:
https://www.encodeproject.org/experiments/ENCSR720CUD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR720CUD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB561GQK

source_name: Mus musculus strain C57BL/6NJ regulatory T primary cell

value: ENCBS227KTL at ENCODE; https://www.encodeproject.org/ENCBS227KTL/


title: total RNA-seq from regulatory T cell (ENCLB557FAH)

description:
https://www.encodeproject.org/experiments/ENCSR687HLO/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR687HLO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB557FAH

value: ENCBS591WDA at ENCODE; https://www.encodeproject.org/ENCBS591WDA/


title: total RNA-seq from regulatory T cell (ENCLB676JJJ)

description:
https://www.encodeproject.org/experiments/ENCSR720CUD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR720CUD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB676JJJ

value: regulatory T cell

value: ENCBS468LQU at ENCODE; https://www.encodeproject.org/ENCBS468LQU/


title: total RNA-seq from regulatory T cell (ENCLB751PTU)

description:
https://www.encodeproject.org/experiments/ENCSR687HLO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR687HLO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB751PTU

value: unknown

value: ENCBS820CMJ at ENCODE; https://www.encodeproject.org/ENCBS820CMJ/


title: total RNA-seq from regulatory T cell (ENCLB479HTC)

description:
https://www.encodeproject.org/experiments/ENCSR720CUD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR720CUD
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB479HTC

value: Tim Reddy, Duke

value: ENCBS556KBS at ENCODE; https://www.encodeproject.org/ENCBS556KBS/


title: total RNA-seq from T-helper 1 cell (ENCLB941ZYG)

description:
https://www.encodeproject.org/experiments/ENCSR141PRV/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR141PRV
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB941ZYG

value: Maria Ciofani

value: ENCBS224HQD at ENCODE; https://www.encodeproject.org/ENCBS224HQD/


title: total RNA-seq from regulatory T cell (ENCLB292JOF)

description:
https://www.encodeproject.org/experiments/ENCSR687HLO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR687HLO
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB292JOF

value: not collected

value: ENCBS907CAY at ENCODE; https://www.encodeproject.org/ENCBS907CAY/


title: total RNA-seq from T-helper 2 cell (ENCLB213TDN)

description:
https://www.encodeproject.org/experiments/ENCSR100YQC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR100YQC
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB213TDN

source_name: Mus musculus strain C57BL/6NJ T-helper 2 primary cell

value: T-helper 2 cell

value: primary cell

value: ENCBS782CSK at ENCODE; https://www.encodeproject.org/ENCBS782CSK/


title: total RNA-seq from T-helper 17 cell (ENCLB521FXV)

description:
https://www.encodeproject.org/experiments/ENCSR169MYZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR169MYZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB521FXV

value: T-helper 17 cell

value: ENCBS133TMG at ENCODE; https://www.encodeproject.org/ENCBS133TMG/


title: total RNA-seq from T-helper 2 cell (ENCLB749FUZ)

description:
https://www.encodeproject.org/experiments/ENCSR100YQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR100YQC
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB749FUZ

value: ENCBS405JQH at ENCODE; https://www.encodeproject.org/ENCBS405JQH/


title: total RNA-seq from regulatory T cell (ENCLB587IAT)

description:
https://www.encodeproject.org/experiments/ENCSR086CAL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR086CAL
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB587IAT

value: ENCBS960YAS at ENCODE; https://www.encodeproject.org/ENCBS960YAS/


title: ATAC-seq from T-helper 17 cell (ENCLB800MCD)

description:
https://www.encodeproject.org/experiments/ENCSR639PPN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR639PPN
assay title: ATAC-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB800MCD

value: ENCBS818MLG at ENCODE; https://www.encodeproject.org/ENCBS818MLG/


title: total RNA-seq from T-helper 17 cell (ENCLB249LSK)

description:
https://www.encodeproject.org/experiments/ENCSR169MYZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR169MYZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB249LSK

value: ENCBS526CYS at ENCODE; https://www.encodeproject.org/ENCBS526CYS/


title: total RNA-seq from regulatory T cell (ENCLB500MNC)

description:
https://www.encodeproject.org/experiments/ENCSR086CAL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR086CAL
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB500MNC

value: regulatory T cell

value: unknown

value: ENCBS230WHG at ENCODE; https://www.encodeproject.org/ENCBS230WHG/


title: total RNA-seq from regulatory T cell (ENCLB310TQE)

description:
https://www.encodeproject.org/experiments/ENCSR086CAL/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR086CAL
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB310TQE

value: Tim Reddy, Duke

value: ENCBS192PZS at ENCODE; https://www.encodeproject.org/ENCBS192PZS/


title: total RNA-seq from T-helper 1 cell (ENCLB855GEL)

description:
https://www.encodeproject.org/experiments/ENCSR141PRV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR141PRV
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB855GEL

value: T-helper 1 cell

value: Maria Ciofani

value: ENCBS104FFK at ENCODE; https://www.encodeproject.org/ENCBS104FFK/


title: total RNA-seq from T-helper 1 cell (ENCLB021CXR)

description:
https://www.encodeproject.org/experiments/ENCSR076CCA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR076CCA
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB021CXR

value: not collected

value: ENCBS629BNE at ENCODE; https://www.encodeproject.org/ENCBS629BNE/


title: total RNA-seq from T-helper 1 cell (ENCLB886BQO)

description:
https://www.encodeproject.org/experiments/ENCSR076CCA/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR076CCA
assay title: total RNA-seq
assembly: mm10
encode release date: 2025-09-30
lab: Tim Reddy, Duke
library encode accession: ENCLB886BQO

value: primary cell

value: ENCBS502GVT at ENCODE; https://www.encodeproject.org/ENCBS502GVT/