title: Flow-FISH CRISPR screen from K562 (ENCLB815IYN)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB815IYN
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB718HPU)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB718HPU
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS063ATK at ENCODE; https://www.encodeproject.org/ENCBS063ATK/


title: Flow-FISH CRISPR screen from K562 (ENCLB937QBM)

description:
https://www.encodeproject.org/experiments/ENCSR361FSA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR361FSA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB937QBM
size range: 200-210

value: ENCBS878ZBK at ENCODE; https://www.encodeproject.org/ENCBS878ZBK/


title: Flow-FISH CRISPR screen from K562 (ENCLB766HYK)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB766HYK
size range: 200-210

value: ENCBS521VQH at ENCODE; https://www.encodeproject.org/ENCBS521VQH/


title: DNase-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB030XDM)

description:
https://www.encodeproject.org/experiments/ENCSR578YFZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR578YFZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB030XDM

source_name: Homo sapiens female adult (33 years) activated naive CD4-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS489XLS at ENCODE; https://www.encodeproject.org/ENCBS489XLS/


title: Flow-FISH CRISPR screen from K562 (ENCLB291IWZ)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB291IWZ
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB545OVT)

description:
https://www.encodeproject.org/experiments/ENCSR360STF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR360STF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB545OVT

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: 38 year

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS481ZFO at ENCODE; https://www.encodeproject.org/ENCBS481ZFO/


title: DNase-seq from K562 (ENCLB458UMM)

description:
https://www.encodeproject.org/experiments/ENCSR577KGS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR577KGS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB458UMM

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS371FIN at ENCODE; https://www.encodeproject.org/ENCBS371FIN/


title: DNase-seq from T-cell (ENCLB692WMU)

description:
https://www.encodeproject.org/experiments/ENCSR359MGP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR359MGP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB692WMU

source_name: Homo sapiens male adult (42 years) T-cell primary cell

value: T-cell

value: adult

value: 42 year

value: ENCBS327NLY at ENCODE; https://www.encodeproject.org/ENCBS327NLY/


title: DNase-seq from heart left ventricle (ENCLB340CIH)

description:
https://www.encodeproject.org/experiments/ENCSR576PKO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR576PKO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB340CIH

source_name: Homo sapiens male adult (40 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: Shin Lin

value: ENCBS165NTO at ENCODE; https://www.encodeproject.org/ENCBS165NTO/


title: Flow-FISH CRISPR screen from K562 (ENCLB196JAK)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB196JAK
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS521VQH at ENCODE; https://www.encodeproject.org/ENCBS521VQH/


title: Flow-FISH CRISPR screen from K562 (ENCLB740JLK)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB740JLK
size range: 200-210

value: cell line

value: female

value: ENCBS063ATK at ENCODE; https://www.encodeproject.org/ENCBS063ATK/


title: Flow-FISH CRISPR screen from K562 (ENCLB004RYV)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB004RYV
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: proliferation CRISPR screen from K562 (ENCLB905JWS)

description:
https://www.encodeproject.org/experiments/ENCSR356RUW/
***************
biological replicate number: 2
technical replicate number: 1
description: Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR356RUW
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB905JWS

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/efd73756-33ac-41e4-839d-949c78bbc8f6/@@download/attachment/greenleaf_gata1_myb_zmynd8_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: adult

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS043LTU at ENCODE; https://www.encodeproject.org/ENCBS043LTU/


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB616LWD)

description:
https://www.encodeproject.org/experiments/ENCSR577OFX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR577OFX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB616LWD

source_name: Homo sapiens male adult (42 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS638XPN at ENCODE; https://www.encodeproject.org/ENCBS638XPN/


title: Flow-FISH CRISPR screen from K562 (ENCLB215XNC)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB215XNC
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS913TPF at ENCODE; https://www.encodeproject.org/ENCBS913TPF/


title: Flow-FISH CRISPR screen from K562 (ENCLB814MAT)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB814MAT
size range: 200-210

value: cell line

value: female


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB227HJK)

description:
https://www.encodeproject.org/experiments/ENCSR360STF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR360STF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB227HJK

value: adult

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS608CQV at ENCODE; https://www.encodeproject.org/ENCBS608CQV/


title: Flow-FISH CRISPR screen from K562 (ENCLB756FOA)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB756FOA
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB750ZOF)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB750ZOF
size range: 200-210

value: ENCBS079HMQ at ENCODE; https://www.encodeproject.org/ENCBS079HMQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB595MOE)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB595MOE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB216SAV)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB216SAV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB909JKO)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB909JKO
size range: 200-210

value: ENCBS585IBP at ENCODE; https://www.encodeproject.org/ENCBS585IBP/


title: Flow-FISH CRISPR screen from K562 (ENCLB861YYV)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB861YYV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB681DSC)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB681DSC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB710SWT)

description:
https://www.encodeproject.org/experiments/ENCSR575CFM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR575CFM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB710SWT
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB136YLP)

description:
https://www.encodeproject.org/experiments/ENCSR356RUW/
***************
biological replicate number: 1
technical replicate number: 1
description: Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR356RUW
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB136YLP

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS150HJG at ENCODE; https://www.encodeproject.org/ENCBS150HJG/


title: DNase-seq from HUDEP-2 (ENCLB339ZXR)

description:
https://www.encodeproject.org/experiments/ENCSR354TAL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR354TAL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB339ZXR

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS239USI at ENCODE; https://www.encodeproject.org/ENCBS239USI/


title: Flow-FISH CRISPR screen from K562 (ENCLB052JUM)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB052JUM
size range: 200-210

value: cell line

value: female

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS644CNR at ENCODE; https://www.encodeproject.org/ENCBS644CNR/


title: Flow-FISH CRISPR screen from K562 (ENCLB921QVQ)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB921QVQ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB101MUA)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB101MUA
size range: 200-210

value: ENCBS585IBP at ENCODE; https://www.encodeproject.org/ENCBS585IBP/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB501ZNW)

description:
https://www.encodeproject.org/experiments/ENCSR574WTK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR574WTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB501ZNW

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: AllCells

value: ENCBS493RPQ at ENCODE; https://www.encodeproject.org/ENCBS493RPQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB046GZA)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB046GZA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB045WMM)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB045WMM
size range: 200-210


title: DNase-seq from suppressor macrophage (ENCLB726FRN)

description:
https://www.encodeproject.org/experiments/ENCSR354GEV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR354GEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB726FRN

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS355MWP at ENCODE; https://www.encodeproject.org/ENCBS355MWP/


title: Flow-FISH CRISPR screen from K562 (ENCLB258NRM)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB258NRM
size range: 200-210

value: cell line

value: female

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS727HFR at ENCODE; https://www.encodeproject.org/ENCBS727HFR/


title: Flow-FISH CRISPR screen from K562 (ENCLB721KFL)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB721KFL
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS910FDM at ENCODE; https://www.encodeproject.org/ENCBS910FDM/


title: DNase-seq from suppressor macrophage (ENCLB651PUY)

description:
https://www.encodeproject.org/experiments/ENCSR354GEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR354GEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB651PUY

value: primary cell

value: ENCBS794RVL at ENCODE; https://www.encodeproject.org/ENCBS794RVL/


title: DNase-seq from astrocyte (ENCLB228QDJ)

description:
https://www.encodeproject.org/experiments/ENCSR573XFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573XFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB228QDJ

source_name: Homo sapiens male adult (53 years) astrocyte in vitro differentiated cells

value: astrocyte

value: in vitro differentiated cells

value: male

value: Bradley Bernstein

value: ENCBS353WDL at ENCODE; https://www.encodeproject.org/ENCBS353WDL/


title: Flow-FISH CRISPR screen from K562 (ENCLB726VDO)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB726VDO
size range: 200-210

value: ENCBS227VZU at ENCODE; https://www.encodeproject.org/ENCBS227VZU/


title: Flow-FISH CRISPR screen from K562 (ENCLB212BQG)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB212BQG
size range: 200-210

value: cell line


title: DNase-seq from spleen (ENCLB500BUT)

description:
https://www.encodeproject.org/experiments/ENCSR573XQQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573XQQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB500BUT

source_name: Homo sapiens female adult (61 years) spleen tissue

value: spleen

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS324TQJ at ENCODE; https://www.encodeproject.org/ENCBS324TQJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB565RHD)

description:
https://www.encodeproject.org/experiments/ENCSR353ICQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR353ICQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB565RHD
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS644CNR at ENCODE; https://www.encodeproject.org/ENCBS644CNR/


title: Flow-FISH CRISPR screen from K562 (ENCLB927IBC)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB927IBC
size range: 200-210

value: ENCBS727HFR at ENCODE; https://www.encodeproject.org/ENCBS727HFR/


title: Flow-FISH CRISPR screen from K562 (ENCLB921KTB)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB921KTB
size range: 200-210

value: ENCBS227VZU at ENCODE; https://www.encodeproject.org/ENCBS227VZU/


title: Flow-FISH CRISPR screen from K562 (ENCLB388UXR)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB388UXR
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB848ZHX)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB848ZHX
size range: 200-210

value: ENCBS949TPG at ENCODE; https://www.encodeproject.org/ENCBS949TPG/


title: Flow-FISH CRISPR screen from K562 (ENCLB915TIL)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB915TIL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB559NOK)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB559NOK
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB974FID)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB974FID
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: BJAB

value: child

value: 5 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS258PEX at ENCODE; https://www.encodeproject.org/ENCBS258PEX/


title: Flow-FISH CRISPR screen from BJAB (ENCLB615ZPM)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB615ZPM
size range: 200-210

value: female

value: ENCBS517JVL at ENCODE; https://www.encodeproject.org/ENCBS517JVL/


title: Flow-FISH CRISPR screen from BJAB (ENCLB818DHC)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB818DHC
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB202ELL)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB202ELL
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB361ILE)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB361ILE
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB603QVK)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB603QVK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB621BMH)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB621BMH
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: ENCBS910FDM at ENCODE; https://www.encodeproject.org/ENCBS910FDM/


title: Flow-FISH CRISPR screen from K562 (ENCLB225RFW)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB225RFW
size range: 200-210

value: adult

value: 53 year

value: ENCBS065DDT at ENCODE; https://www.encodeproject.org/ENCBS065DDT/


title: Flow-FISH CRISPR screen from K562 (ENCLB591TXY)

description:
https://www.encodeproject.org/experiments/ENCSR351NHK/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR351NHK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB591TXY
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from BJAB (ENCLB260YOV)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB260YOV
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB590ZHK)

description:
https://www.encodeproject.org/experiments/ENCSR350ZIZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR350ZIZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB590ZHK
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB627DHO)

description:
https://www.encodeproject.org/experiments/ENCSR348QXB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR348QXB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB627DHO

source_name: Homo sapiens female adult (45 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 45 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS230TEZ at ENCODE; https://www.encodeproject.org/ENCBS230TEZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB844ENJ)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB844ENJ
size range: 200-210

value: cell line

value: ENCBS015MTY at ENCODE; https://www.encodeproject.org/ENCBS015MTY/


title: Flow-FISH CRISPR screen from K562 (ENCLB244EII)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB244EII
size range: 200-210

value: female


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB025IJR)

description:
https://www.encodeproject.org/experiments/ENCSR348EZO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR348EZO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB025IJR

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours

value: male

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS357NIB at ENCODE; https://www.encodeproject.org/ENCBS357NIB/


title: Flow-FISH CRISPR screen from K562 (ENCLB789EMY)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB789EMY
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS065DDT at ENCODE; https://www.encodeproject.org/ENCBS065DDT/


title: Flow-FISH CRISPR screen from K562 (ENCLB647UQL)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB647UQL
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB304CPV)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB304CPV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB885PIM)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB885PIM
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB421BHO)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB421BHO
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS958JYD at ENCODE; https://www.encodeproject.org/ENCBS958JYD/


title: DNase-seq from DND-41 (ENCLB579AVC)

description:
https://www.encodeproject.org/experiments/ENCSR571RJW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571RJW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB579AVC

source_name: Homo sapiens DND-41 cell line

value: cell line

value: T-acute lymphoblastic leukemia (T-ALL; type III cortical)

value: 13 year

value: John Stamatoyannopoulos, UW

value: ENCBS518YBY at ENCODE; https://www.encodeproject.org/ENCBS518YBY/

value: Derived from ENCODE donor ENCDO183AAA; https://www.encodeproject.org/ENCDO183AAA/


title: DNase-seq from pancreas (ENCLB569KIG)

description:
https://www.encodeproject.org/experiments/ENCSR570RRZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR570RRZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB569KIG

source_name: Homo sapiens female adult (41 years) pancreas tissue

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Shin Lin

value: ENCBS063DHU at ENCODE; https://www.encodeproject.org/ENCBS063DHU/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB787RSD)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB787RSD
size range: 200-210

value: male

value: acute monocytic leukemia

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS066WOE at ENCODE; https://www.encodeproject.org/ENCBS066WOE/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB493UGP)

description:
https://www.encodeproject.org/experiments/ENCSR346UXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR346UXU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB493UGP

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: primary cell

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS848VQZ at ENCODE; https://www.encodeproject.org/ENCBS848VQZ/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB653RMD)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB653RMD
size range: 200-210

value: cell line

value: child

value: 1 year


title: DNase-seq from inflammatory macrophage (ENCLB815XOU)

description:
https://www.encodeproject.org/experiments/ENCSR571EXD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR571EXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB815XOU
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS743NOF at ENCODE; https://www.encodeproject.org/ENCBS743NOF/


title: DNase-seq from pancreas (ENCLB930BCT)

description:
https://www.encodeproject.org/experiments/ENCSR570RRZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR570RRZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB930BCT

value: pancreas

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Shin Lin

value: ENCBS062YST at ENCODE; https://www.encodeproject.org/ENCBS062YST/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB712LDN)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB712LDN
size range: 200-210

value: male

value: acute monocytic leukemia

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS958JYD at ENCODE; https://www.encodeproject.org/ENCBS958JYD/


title: DNase-seq from globus pallidus (ENCLB978FWR)

description:
https://www.encodeproject.org/experiments/ENCSR347RHJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR347RHJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB978FWR

source_name: Homo sapiens male adult (82 years) globus pallidus tissue

value: globus pallidus

value: adult

value: 82 year

value: Thomas Montine

value: ENCBS225JTX at ENCODE; https://www.encodeproject.org/ENCBS225JTX/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB010CHP)

description:
https://www.encodeproject.org/experiments/ENCSR346KOV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR346KOV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB010CHP

source_name: Homo sapiens male adult (42 years) activated effector memory CD4-positive, alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS775CBY at ENCODE; https://www.encodeproject.org/ENCBS775CBY/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB172ZGM)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB172ZGM
size range: 200-210

value: cell line

value: child

value: 1 year


title: Flow-FISH CRISPR screen from K562 (ENCLB308PBQ)

description:
https://www.encodeproject.org/experiments/ENCSR571UMQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR571UMQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB308PBQ
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS065DDT at ENCODE; https://www.encodeproject.org/ENCBS065DDT/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB136YHJ)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB136YHJ
size range: 200-210

value: male

value: acute monocytic leukemia

value: ATCC

value: ENCBS066WOE at ENCODE; https://www.encodeproject.org/ENCBS066WOE/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB337MXT)

description:
https://www.encodeproject.org/experiments/ENCSR564RTW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR564RTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB337MXT

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: primary cell

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS661BPJ at ENCODE; https://www.encodeproject.org/ENCBS661BPJ/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB006FBA)

description:
https://www.encodeproject.org/experiments/ENCSR348EZO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR348EZO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB006FBA

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS920SIR at ENCODE; https://www.encodeproject.org/ENCBS920SIR/


title: DNase-seq from kidney (ENCLB372VCO)

description:
https://www.encodeproject.org/experiments/ENCSR346RPY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR346RPY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB372VCO

source_name: Homo sapiens male embryo (108 days) kidney tissue

value: kidney

value: tissue

value: embryonic

value: 108 day

value: Ian Glass

value: ENCBS990UAT at ENCODE; https://www.encodeproject.org/ENCBS990UAT/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB174TCH)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB174TCH
size range: 200-210

value: cell line

value: male

value: acute monocytic leukemia

value: child

value: 1 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS958JYD at ENCODE; https://www.encodeproject.org/ENCBS958JYD/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB292ICG)

description:
https://www.encodeproject.org/experiments/ENCSR568BYM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR568BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB292ICG
size range: 200-210

value: ENCBS066WOE at ENCODE; https://www.encodeproject.org/ENCBS066WOE/


title: DNase-seq from activated T-cell (ENCLB904IPX)

description:
https://www.encodeproject.org/experiments/ENCSR345ZWI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR345ZWI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB904IPX

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS884BSE at ENCODE; https://www.encodeproject.org/ENCBS884BSE/


title: DNase-seq from activated T-cell (ENCLB108UQP)

description:
https://www.encodeproject.org/experiments/ENCSR345ZWI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR345ZWI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB108UQP

value: ENCBS846PSF at ENCODE; https://www.encodeproject.org/ENCBS846PSF/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB038NWE)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB038NWE
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Lipopolysaccharide from Escherichia coli K12 for 4 hours

value: cell line

value: male

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS117EBH at ENCODE; https://www.encodeproject.org/ENCBS117EBH/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB612DXX)

description:
https://www.encodeproject.org/experiments/ENCSR344RFB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR344RFB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB612DXX

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS680XDZ at ENCODE; https://www.encodeproject.org/ENCBS680XDZ/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB489WZG)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB489WZG
size range: 200-210

value: acute monocytic leukemia

value: child

value: 1 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS378EWS at ENCODE; https://www.encodeproject.org/ENCBS378EWS/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB873MXT)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB873MXT
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB830BRX)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB830BRX
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB358XZT)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB358XZT
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB582ISU)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB582ISU
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB443YIY)

description:
https://www.encodeproject.org/experiments/ENCSR344RFB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR344RFB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB443YIY

value: primary cell

value: adult

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS247SMV at ENCODE; https://www.encodeproject.org/ENCBS247SMV/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB096HOV)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB096HOV
size range: 200-210

value: cell line

value: male

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;


title: DNase-seq from ovary (ENCLB634NQZ)

description:
https://www.encodeproject.org/experiments/ENCSR342NAG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR342NAG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB634NQZ

source_name: Homo sapiens female adult (41 years) ovary tissue

value: ovary

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Shin Lin

value: ENCBS627MVX at ENCODE; https://www.encodeproject.org/ENCBS627MVX/


title: DNase-seq from activated T-cell (ENCLB596MXS)

description:
https://www.encodeproject.org/experiments/ENCSR341ORA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR341ORA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB596MXS

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: activated T-cell

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS854CTP at ENCODE; https://www.encodeproject.org/ENCBS854CTP/


title: Flow-FISH CRISPR screen from K562 (ENCLB554FMU)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB554FMU
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS992DUW at ENCODE; https://www.encodeproject.org/ENCBS992DUW/


title: Flow-FISH CRISPR screen from K562 (ENCLB897XCC)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB897XCC
size range: 200-210

value: cell line

value: ENCBS369AKH at ENCODE; https://www.encodeproject.org/ENCBS369AKH/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB597KXW)

description:
https://www.encodeproject.org/experiments/ENCSR343INU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR343INU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB597KXW
size range: 200-210

value: male

value: acute monocytic leukemia

value: child

value: 1 year

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS117EBH at ENCODE; https://www.encodeproject.org/ENCBS117EBH/


title: Flow-FISH CRISPR screen from K562 (ENCLB854VAF)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB854VAF
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB704ZYG)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB704ZYG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB705EIP)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB705EIP
size range: 200-210

value: ENCBS992QHA at ENCODE; https://www.encodeproject.org/ENCBS992QHA/


title: Flow-FISH CRISPR screen from K562 (ENCLB637DLA)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB637DLA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB284XMT)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB284XMT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB618TVQ)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB618TVQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB957QXV)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB957QXV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB487ACD)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB487ACD
size range: 200-210


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB170TZP)

description:
https://www.encodeproject.org/experiments/ENCSR562TLN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562TLN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB170TZP

source_name: Homo sapiens female adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS631JLX at ENCODE; https://www.encodeproject.org/ENCBS631JLX/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB363GCC)

description:
https://www.encodeproject.org/experiments/ENCSR561QYI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR561QYI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB363GCC

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS178QPZ at ENCODE; https://www.encodeproject.org/ENCBS178QPZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB420PAM)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB420PAM
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS970CBK at ENCODE; https://www.encodeproject.org/ENCBS970CBK/


title: Flow-FISH CRISPR screen from K562 (ENCLB939VDN)

description:
https://www.encodeproject.org/experiments/ENCSR340BXS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR340BXS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB939VDN
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB647MNQ)

description:
https://www.encodeproject.org/experiments/ENCSR561QYI/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR561QYI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB647MNQ

value: ENCBS873NJP at ENCODE; https://www.encodeproject.org/ENCBS873NJP/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB331IBM)

description:
https://www.encodeproject.org/experiments/ENCSR561QYI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR561QYI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB331IBM

value: female

value: ENCBS851XXM at ENCODE; https://www.encodeproject.org/ENCBS851XXM/


title: Flow-FISH CRISPR screen from K562 (ENCLB555GAU)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB555GAU
size range: 200-210

value: ENCBS873FND at ENCODE; https://www.encodeproject.org/ENCBS873FND/


title: Flow-FISH CRISPR screen from K562 (ENCLB167QAZ)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB167QAZ
size range: 200-210

value: ENCBS414MUJ at ENCODE; https://www.encodeproject.org/ENCBS414MUJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB865CXV)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB865CXV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB965ZJL)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB965ZJL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB761EUR)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB761EUR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB022AWA)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB022AWA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB085IFR)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB085IFR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB856DHW)

description:
https://www.encodeproject.org/experiments/ENCSR338VCJ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR338VCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB856DHW
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB751IEK)

description:
https://www.encodeproject.org/experiments/ENCSR336PZI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR336PZI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB751IEK

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS019VIG at ENCODE; https://www.encodeproject.org/ENCBS019VIG/


title: DNase-seq from activated T-helper 1 cell (ENCLB191OMC)

description:
https://www.encodeproject.org/experiments/ENCSR338QHF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR338QHF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB191OMC

source_name: Homo sapiens male adult (42 years) activated T-helper 1 primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: activated T-helper 1 cell

value: primary cell

value: adult

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS722CPR at ENCODE; https://www.encodeproject.org/ENCBS722CPR/


title: DNase-seq from HUDEP-2 (ENCLB038AQQ)

description:
https://www.encodeproject.org/experiments/ENCSR558CHH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR558CHH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB038AQQ

value: cell line

value: ENCBS675WNX at ENCODE; https://www.encodeproject.org/ENCBS675WNX/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB359YSO)

description:
https://www.encodeproject.org/experiments/ENCSR336MXG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR336MXG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB359YSO

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: 33 year

value: ENCBS552CSO at ENCODE; https://www.encodeproject.org/ENCBS552CSO/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB078NPO)

description:
https://www.encodeproject.org/experiments/ENCSR333NUA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR333NUA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB078NPO

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: 34 year

value: ENCBS293WCJ at ENCODE; https://www.encodeproject.org/ENCBS293WCJ/


title: Control CRISPR screen from A549 (ENCLB831COY)

description:
https://www.encodeproject.org/experiments/ENCSR330GSS/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR330GSS
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB831COY
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens A549 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: 58 year

value: Bing Ren, UCSD

value: ATCC

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS277HTC at ENCODE; https://www.encodeproject.org/ENCBS277HTC/


title: DNase-seq from HUDEP-2 (ENCLB295JRT)

description:
https://www.encodeproject.org/experiments/ENCSR332BXV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR332BXV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB295JRT

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS108FWY at ENCODE; https://www.encodeproject.org/ENCBS108FWY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB033JZS)

description:
https://www.encodeproject.org/experiments/ENCSR556EKY/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR556EKY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB033JZS

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS164NVK at ENCODE; https://www.encodeproject.org/ENCBS164NVK/


title: Control CRISPR screen from A549 (ENCLB417PNG)

description:
https://www.encodeproject.org/experiments/ENCSR330GSS/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR330GSS
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB417PNG
size range: 710-720

value: cell line

value: ENCBS410VSB at ENCODE; https://www.encodeproject.org/ENCBS410VSB/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB086BML)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB086BML
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 5 ug/mL anti-CD3 for 4 hours, 100 ng/mL phorbol 12-myristate 13-acetate for 4 hours

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS293HNT at ENCODE; https://www.encodeproject.org/ENCBS293HNT/


title: DNase-seq from immature natural killer cell (ENCLB964FQB)

description:
https://www.encodeproject.org/experiments/ENCSR329BRN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR329BRN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB964FQB

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: adult

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS009BMK at ENCODE; https://www.encodeproject.org/ENCBS009BMK/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB804COY)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB804COY
size range: 200-210

value: ATCC


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB419RSV)

description:
https://www.encodeproject.org/experiments/ENCSR556EKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR556EKY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB419RSV

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS479ZKP at ENCODE; https://www.encodeproject.org/ENCBS479ZKP/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB067FYN)

description:
https://www.encodeproject.org/experiments/ENCSR556EKY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR556EKY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB067FYN

value: male

value: ENCBS965NUP at ENCODE; https://www.encodeproject.org/ENCBS965NUP/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB674OQU)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB674OQU
size range: 200-210

value: Jurkat

value: cell line

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ENCBS225ERP at ENCODE; https://www.encodeproject.org/ENCBS225ERP/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB858ZMZ)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB858ZMZ
size range: 200-210

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from Jurkat (ENCLB968QRQ)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB968QRQ
size range: 200-210

value: ENCBS293HNT at ENCODE; https://www.encodeproject.org/ENCBS293HNT/


title: DNase-seq from HUDEP-2 (ENCLB054DEB)

description:
https://www.encodeproject.org/experiments/ENCSR332OXB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR332OXB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB054DEB

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS034DAS at ENCODE; https://www.encodeproject.org/ENCBS034DAS/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB509KHP)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB509KHP
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from Jurkat (ENCLB428GVK)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428GVK
size range: 200-210

value: male


title: Flow-FISH CRISPR screen from K562 (ENCLB994OAL)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB994OAL
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS778HDG at ENCODE; https://www.encodeproject.org/ENCBS778HDG/


title: Flow-FISH CRISPR screen from K562 (ENCLB635UNI)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB635UNI
size range: 200-210

value: cell line

value: ENCBS635UXE at ENCODE; https://www.encodeproject.org/ENCBS635UXE/


title: proliferation CRISPR screen from HCT116 (ENCLB194AOF)

description:
https://www.encodeproject.org/experiments/ENCSR553VAO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR553VAO
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB194AOF
size range: 710-720

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 0 days post-nucleic acid delivery time

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS651NDI at ENCODE; https://www.encodeproject.org/ENCBS651NDI/


title: Flow-FISH CRISPR screen from K562 (ENCLB729AYO)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB729AYO
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS634TRB at ENCODE; https://www.encodeproject.org/ENCBS634TRB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB118ABD)

description:
https://www.encodeproject.org/experiments/ENCSR327TKJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR327TKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB118ABD

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS639IDD at ENCODE; https://www.encodeproject.org/ENCBS639IDD/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB591EPU)

description:
https://www.encodeproject.org/experiments/ENCSR327TKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR327TKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB591EPU

value: male

value: ENCBS011MTT at ENCODE; https://www.encodeproject.org/ENCBS011MTT/


title: Flow-FISH CRISPR screen from K562 (ENCLB500BGF)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB500BGF
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB043DRA)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB043DRA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB358DNL)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB358DNL
size range: 200-210

value: ENCBS778HDG at ENCODE; https://www.encodeproject.org/ENCBS778HDG/


title: Flow-FISH CRISPR screen from K562 (ENCLB650ESA)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB650ESA
size range: 200-210

value: adult


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB713VCG)

description:
https://www.encodeproject.org/experiments/ENCSR326UAU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR326UAU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB713VCG

source_name: Homo sapiens male adult (56 years) stimulated activated naive CD4-positive, alpha-beta T primary cell

value: 56 year

value: ENCBS805FFY at ENCODE; https://www.encodeproject.org/ENCBS805FFY/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB251EMG)

description:
https://www.encodeproject.org/experiments/ENCSR326UAU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR326UAU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB251EMG

value: primary cell

value: ENCBS296CJD at ENCODE; https://www.encodeproject.org/ENCBS296CJD/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB327HUQ)

description:
https://www.encodeproject.org/experiments/ENCSR556AXL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR556AXL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB327HUQ
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS225ERP at ENCODE; https://www.encodeproject.org/ENCBS225ERP/


title: Flow-FISH CRISPR screen from K562 (ENCLB218IJR)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB218IJR
size range: 200-210

value: cell line

value: female

value: ENCBS635UXE at ENCODE; https://www.encodeproject.org/ENCBS635UXE/


title: Flow-FISH CRISPR screen from K562 (ENCLB274WVE)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB274WVE
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS599FQW at ENCODE; https://www.encodeproject.org/ENCBS599FQW/


title: Flow-FISH CRISPR screen from K562 (ENCLB883XXV)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB883XXV
size range: 200-210

value: adult

value: ENCBS982GFS at ENCODE; https://www.encodeproject.org/ENCBS982GFS/


title: Flow-FISH CRISPR screen from K562 (ENCLB828ZMX)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB828ZMX
size range: 200-210


title: proliferation CRISPR screen from HCT116 (ENCLB075KKO)

description:
https://www.encodeproject.org/experiments/ENCSR553VAO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR553VAO
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB075KKO
size range: 710-720

value: male

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS671PGO at ENCODE; https://www.encodeproject.org/ENCBS671PGO/


title: Flow-FISH CRISPR screen from K562 (ENCLB861XGD)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB861XGD
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB074ATG)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB074ATG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB591BZU)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB591BZU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB525WXT)

description:
https://www.encodeproject.org/experiments/ENCSR551PUZ/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR551PUZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB525WXT
size range: 200-210

value: ENCBS778HDG at ENCODE; https://www.encodeproject.org/ENCBS778HDG/


title: Flow-FISH CRISPR screen from K562 (ENCLB969BDK)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB969BDK
size range: 200-210


title: proliferation CRISPR screen from MCF-7 (ENCLB953QQP)

description:
https://www.encodeproject.org/experiments/ENCSR325WCA/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR325WCA
assay title: proliferation CRISPR screen
possible controls: ENCSR198LPZ
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB953QQP
size range: 710-720

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS763RJU at ENCODE; https://www.encodeproject.org/ENCBS763RJU/