title: Flow-FISH CRISPR screen from K562 (ENCLB627JPQ)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB627JPQ
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS487XRC at ENCODE; https://www.encodeproject.org/ENCBS487XRC/


title: Flow-FISH CRISPR screen from K562 (ENCLB508XRA)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR497BIB/
***************
biological replicate number: 2
technical replicate number: 1
description: CD164
experiment encode accession: ENCSR497BIB
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR804HRD
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB508XRA

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

tag: dev stage

value: adult

tag: age

tag: passage number

tag: lab

value: Pardis Sabeti, Broad

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

tag: link

value: ENCBS400HZN at ENCODE; https://www.encodeproject.org/ENCBS400HZN/


title: DNase-seq from K562 (ENCLB149ZTQ)

description:
https://www.encodeproject.org/experiments/ENCSR082QLL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR082QLL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB149ZTQ

source_name: Homo sapiens K562 cell line

value: John Stamatoyannopoulos, UW

value: ENCBS361ASE at ENCODE; https://www.encodeproject.org/ENCBS361ASE/


title: STARR-seq from A549 (ENCLB175NDM)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB175NDM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM Mapracorat (agonist) for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:Mapracorat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS158RJP at ENCODE; https://www.encodeproject.org/ENCBS158RJP/


title: STARR-seq from A549 (ENCLB508PEF)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB508PEF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB352UUS)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB352UUS
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: STARR-seq from A549 (ENCLB210XNT)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB210XNT
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS385DUA at ENCODE; https://www.encodeproject.org/ENCBS385DUA/


title: STARR-seq from A549 (ENCLB021UZG)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB021UZG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ENCBS685FQI at ENCODE; https://www.encodeproject.org/ENCBS685FQI/


title: STARR-seq from A549 (ENCLB777BRF)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB777BRF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: ENCBS959CPU at ENCODE; https://www.encodeproject.org/ENCBS959CPU/


title: DNase-seq from NCI-H524 (ENCLB415VWF)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB415VWF

source_name: Homo sapiens NCI-H524 cell line treated with 0.1% DMSO for 48 hours

value: 63 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS893ZST at ENCODE; https://www.encodeproject.org/ENCBS893ZST/


title: Flow-FISH CRISPR screen from K562 (ENCLB312RZD)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB312RZD
size range: 200-210

value: female

value: Jesse Engreitz, Stanford

value: ENCBS813EDG at ENCODE; https://www.encodeproject.org/ENCBS813EDG/


title: STARR-seq from A549 (ENCLB934WRJ)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB934WRJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: Tim Reddy, Duke


title: Flow-FISH CRISPR screen from K562 (ENCLB214PUN)

description:
https://www.encodeproject.org/experiments/ENCSR497BIB/
***************
biological replicate number: 1
technical replicate number: 1
description: CD164
experiment encode accession: ENCSR497BIB
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR804HRD
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB214PUN

value: chronic myelogenous leukemia (CML)

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS065WNC at ENCODE; https://www.encodeproject.org/ENCBS065WNC/


title: PRO-cap from WTC11 (ENCLB715TEV)

description:
https://www.encodeproject.org/experiments/ENCSR178XKL/
***************
biological replicate number: 2
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in WTC11.
experiment encode accession: ENCSR178XKL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB715TEV

source_name: Homo sapiens WTC11 cell line

value: cell line

value: 30 year

value: Haiyuan Yu, Cornell

value: ENCBS001RRL at ENCODE; https://www.encodeproject.org/ENCBS001RRL/


title: DNase-seq from HUDEP-2 (ENCLB048KBJ)

description:
https://www.encodeproject.org/experiments/ENCSR255QKV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR255QKV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB048KBJ

source_name: Homo sapiens HUDEP-2 cell line

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS570TSZ at ENCODE; https://www.encodeproject.org/ENCBS570TSZ/


title: PRO-cap from sigmoid colon (ENCLB000RAB)

description:
https://www.encodeproject.org/experiments/ENCSR179FHG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sigmoid colon.
experiment encode accession: ENCSR179FHG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB000RAB

source_name: Homo sapiens female adult (53 years) sigmoid colon tissue

value: sigmoid colon

value: tissue

value: female

value: 53 year

value: GTEx

value: ENCBS877ZRX at ENCODE; https://www.encodeproject.org/ENCBS877ZRX/


title: Flow-FISH CRISPR screen from K562 (ENCLB182XMM)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB182XMM
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS813EDG at ENCODE; https://www.encodeproject.org/ENCBS813EDG/


title: PRO-cap from WTC11 (ENCLB874BGV)

description:
https://www.encodeproject.org/experiments/ENCSR178XKL/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in WTC11.
experiment encode accession: ENCSR178XKL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB874BGV

value: cell line

value: male

value: 30 year

value: Haiyuan Yu, Cornell

value: ENCBS726FSK at ENCODE; https://www.encodeproject.org/ENCBS726FSK/


title: DNase-seq from NCI-H524 (ENCLB911PWA)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB911PWA

value: adult

value: 63 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS836TDL at ENCODE; https://www.encodeproject.org/ENCBS836TDL/


title: PRO-cap from WTC11 (ENCLB874CVG)

description:
https://www.encodeproject.org/experiments/ENCSR178XKL/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in WTC11.
experiment encode accession: ENCSR178XKL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB874CVG


title: Flow-FISH CRISPR screen from K562 (ENCLB848QJF)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB848QJF
size range: 200-210

value: female

value: 53 year

value: ENCBS487XRC at ENCODE; https://www.encodeproject.org/ENCBS487XRC/


title: STARR-seq from A549 (ENCLB688YPK)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB688YPK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM CpdA (antagonist) for 4 hours

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS371JSE at ENCODE; https://www.encodeproject.org/ENCBS371JSE/


title: DNase-seq from HUDEP-2 (ENCLB720NZH)

description:
https://www.encodeproject.org/experiments/ENCSR480UPS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR480UPS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB720NZH

value: cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS540VZT at ENCODE; https://www.encodeproject.org/ENCBS540VZT/


title: Flow-FISH CRISPR screen from K562 (ENCLB093XHA)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB093XHA
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS813EDG at ENCODE; https://www.encodeproject.org/ENCBS813EDG/


title: Flow-FISH CRISPR screen from K562 (ENCLB439YTL)

description:
https://www.encodeproject.org/experiments/ENCSR476KHP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR476KHP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB439YTL

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS103NSB at ENCODE; https://www.encodeproject.org/ENCBS103NSB/


title: Flow-FISH CRISPR screen from K562 (ENCLB925YCJ)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB925YCJ
size range: 200-210

value: female

value: 53 year


title: PRO-cap from WTC11 (ENCLB998FRI)

description:
https://www.encodeproject.org/experiments/ENCSR178XKL/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in WTC11.
experiment encode accession: ENCSR178XKL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB998FRI

value: male

value: 30 year

value: Haiyuan Yu, Cornell

value: ENCBS001RRL at ENCODE; https://www.encodeproject.org/ENCBS001RRL/


title: STARR-seq from A549 (ENCLB955TTJ)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB955TTJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS371JSE at ENCODE; https://www.encodeproject.org/ENCBS371JSE/


title: DNase-seq from HUDEP-2 (ENCLB551ZRK)

description:
https://www.encodeproject.org/experiments/ENCSR079SGU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR079SGU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB551ZRK

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS371NKB at ENCODE; https://www.encodeproject.org/ENCBS371NKB/


title: PRO-cap from sigmoid colon (ENCLB979DUP)

description:
https://www.encodeproject.org/experiments/ENCSR179FHG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sigmoid colon.
experiment encode accession: ENCSR179FHG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB979DUP

value: sigmoid colon

value: tissue

value: adult

value: GTEx

value: ENCBS877ZRX at ENCODE; https://www.encodeproject.org/ENCBS877ZRX/


title: Flow-FISH CRISPR screen from K562 (ENCLB552JHH)

description:
https://www.encodeproject.org/experiments/ENCSR473SLB/
***************
biological replicate number: 2
technical replicate number: 1
description: CAPRIN1
experiment encode accession: ENCSR473SLB
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB552JHH

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS045RKC at ENCODE; https://www.encodeproject.org/ENCBS045RKC/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB193OJW)

description:
https://www.encodeproject.org/experiments/ENCSR179DAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR179DAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB193OJW

source_name: Homo sapiens male adult (21 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: male

value: 21 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS362LVQ at ENCODE; https://www.encodeproject.org/ENCBS362LVQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB862BVV)

description:
https://www.encodeproject.org/experiments/ENCSR080HHB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR080HHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB862BVV
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ENCBS487XRC at ENCODE; https://www.encodeproject.org/ENCBS487XRC/


title: STARR-seq from A549 (ENCLB911HNP)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB911HNP
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS164IKW at ENCODE; https://www.encodeproject.org/ENCBS164IKW/


title: STARR-seq from A549 (ENCLB333FIK)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB333FIK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC

value: ENCBS563VWN at ENCODE; https://www.encodeproject.org/ENCBS563VWN/


title: STARR-seq from A549 (ENCLB266HWW)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB266HWW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB596JRO)

description:
https://www.encodeproject.org/experiments/ENCSR078IVY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR078IVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB596JRO
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS379XRU at ENCODE; https://www.encodeproject.org/ENCBS379XRU/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB913HBV)

description:
https://www.encodeproject.org/experiments/ENCSR079MZU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR079MZU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB913HBV

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS456SYV at ENCODE; https://www.encodeproject.org/ENCBS456SYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB271ZHR)

description:
https://www.encodeproject.org/experiments/ENCSR473SLB/
***************
biological replicate number: 1
technical replicate number: 1
description: CAPRIN1
experiment encode accession: ENCSR473SLB
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB271ZHR

value: cell line

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS457NFP at ENCODE; https://www.encodeproject.org/ENCBS457NFP/


title: STARR-seq from A549 (ENCLB158ZIC)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB158ZIC
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB885LXQ)

description:
https://www.encodeproject.org/experiments/ENCSR078IVY/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR078IVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB885LXQ
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS379XRU at ENCODE; https://www.encodeproject.org/ENCBS379XRU/


title: DNase-seq from MCF-7 (ENCLB949QGF)

description:
https://www.encodeproject.org/experiments/ENCSR249AOU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR249AOU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB949QGF

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 504 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS944LFX at ENCODE; https://www.encodeproject.org/ENCBS944LFX/


title: STARR-seq from A549 (ENCLB512WDB)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB512WDB
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: adult

value: ENCBS177LZS at ENCODE; https://www.encodeproject.org/ENCBS177LZS/


title: DNase-seq from K562 (ENCLB407QFE)

description:
https://www.encodeproject.org/experiments/ENCSR253QZV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR253QZV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB407QFE

value: ENCBS966FEN at ENCODE; https://www.encodeproject.org/ENCBS966FEN/


title: DNase-seq from K562 (ENCLB881CVV)

description:
https://www.encodeproject.org/experiments/ENCSR464HIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR464HIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB881CVV

value: ENCBS704POS at ENCODE; https://www.encodeproject.org/ENCBS704POS/


title: STARR-seq from A549 (ENCLB358LPL)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB358LPL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC


title: STARR-seq from A549 (ENCLB233TPV)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB233TPV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB549AYN)

description:
https://www.encodeproject.org/experiments/ENCSR078IVY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR078IVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB549AYN
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford


title: DNase-seq from suppressor macrophage (ENCLB271FXO)

description:
https://www.encodeproject.org/experiments/ENCSR458QPA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR458QPA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB271FXO

source_name: Homo sapiens female adult (56 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 56 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS742XYY at ENCODE; https://www.encodeproject.org/ENCBS742XYY/


title: STARR-seq from A549 (ENCLB366YHT)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB366YHT
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: adult

value: ENCBS164IKW at ENCODE; https://www.encodeproject.org/ENCBS164IKW/


title: STARR-seq from A549 (ENCLB247YNF)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB247YNF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: ENCBS371JSE at ENCODE; https://www.encodeproject.org/ENCBS371JSE/


title: STARR-seq from A549 (ENCLB648KGE)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB648KGE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:CpdA; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS563VWN at ENCODE; https://www.encodeproject.org/ENCBS563VWN/


title: STARR-seq from A549 (ENCLB069LIM)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB069LIM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS177LZS at ENCODE; https://www.encodeproject.org/ENCBS177LZS/


title: STARR-seq from A549 (ENCLB851UDL)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB851UDL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB374DAX)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB374DAX
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: DNase-seq from DMS114 (ENCLB832YOV)

description:
https://www.encodeproject.org/experiments/ENCSR241OSL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR241OSL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB832YOV

source_name: Homo sapiens DMS114 cell line treated with 0.1% DMSO for 48 hours

value: 68 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS736JKL at ENCODE; https://www.encodeproject.org/ENCBS736JKL/


title: STARR-seq from A549 (ENCLB461YXX)

description:
https://www.encodeproject.org/experiments/ENCSR176UAM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR176UAM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB461YXX
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: PRO-cap from helper T cell (ENCLB178AKB)

description:
https://www.encodeproject.org/experiments/ENCSR683YVU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.
experiment encode accession: ENCSR683YVU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB178AKB

source_name: Homo sapiens helper T primary cell

value: helper T cell

value: primary cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS080MOL at ENCODE; https://www.encodeproject.org/ENCBS080MOL/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB280RBL)

description:
https://www.encodeproject.org/experiments/ENCSR076OSM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR076OSM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB280RBL

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: adult

value: 26 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS381QXV at ENCODE; https://www.encodeproject.org/ENCBS381QXV/


title: DNase-seq from HUDEP-2 (ENCLB958NPF)

description:
https://www.encodeproject.org/experiments/ENCSR456BOZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR456BOZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB958NPF

value: cell line

value: male

value: Riken BioResource Cell Bank

value: ENCBS332IKE at ENCODE; https://www.encodeproject.org/ENCBS332IKE/


title: PRO-cap from Pfeiffer (ENCLB565MQW)

description:
https://www.encodeproject.org/experiments/ENCSR683YIA/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pfeiffer.
experiment encode accession: ENCSR683YIA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB565MQW

source_name: Homo sapiens Pfeiffer cell line

value: Pfeiffer

value: Russell Ryan

value: ENCBS645QTW at ENCODE; https://www.encodeproject.org/ENCBS645QTW/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB432GIF)

description:
https://www.encodeproject.org/experiments/ENCSR074UOT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR074UOT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB432GIF

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: primary cell

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS859UHX at ENCODE; https://www.encodeproject.org/ENCBS859UHX/


title: DNase-seq from NCI-H446 (ENCLB370VFJ)

description:
https://www.encodeproject.org/experiments/ENCSR238XDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR238XDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB370VFJ
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H446 cell line

value: adult

value: 61 year

value: ATCC

value: ENCBS673BMC at ENCODE; https://www.encodeproject.org/ENCBS673BMC/


title: PRO-cap from Metastatic Pancreatic Carcinoma in the Ovary (ENCLB736JVM)

description:
https://www.encodeproject.org/experiments/ENCSR175VMO/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic pancreatic cancer to ovary.
experiment encode accession: ENCSR175VMO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB736JVM

source_name: Homo sapiens female adult (52 years) Metastatic Pancreatic Carcinoma in the Ovary tissue

value: tissue

value: female

value: 52 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS573PNR at ENCODE; https://www.encodeproject.org/ENCBS573PNR/


title: Flow-FISH CRISPR screen from K562 (ENCLB737TYE)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB737TYE
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS539DWR at ENCODE; https://www.encodeproject.org/ENCBS539DWR/


title: Flow-FISH CRISPR screen from K562 (ENCLB369LXW)

description:
https://www.encodeproject.org/experiments/ENCSR078IVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR078IVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB369LXW
size range: 200-210

value: ENCBS379XRU at ENCODE; https://www.encodeproject.org/ENCBS379XRU/


title: PRO-cap from helper T cell (ENCLB649EAB)

description:
https://www.encodeproject.org/experiments/ENCSR683YVU/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.
experiment encode accession: ENCSR683YVU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB649EAB

value: helper T cell

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS080MOL at ENCODE; https://www.encodeproject.org/ENCBS080MOL/


title: PRO-cap from Pfeiffer (ENCLB766ZLG)

description:
https://www.encodeproject.org/experiments/ENCSR683YIA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pfeiffer.
experiment encode accession: ENCSR683YIA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB766ZLG

value: Pfeiffer

value: male

value: Russell Ryan

value: ENCBS691UNM at ENCODE; https://www.encodeproject.org/ENCBS691UNM/


title: PRO-cap from mesenteric fat pad (ENCLB448AQY)

description:
https://www.encodeproject.org/experiments/ENCSR683FOJ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mesenteric fat pad.
experiment encode accession: ENCSR683FOJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB448AQY

source_name: Homo sapiens female adult (59 years) mesenteric fat pad tissue

value: mesenteric fat pad

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS656PPO at ENCODE; https://www.encodeproject.org/ENCBS656PPO/


title: Flow-FISH CRISPR screen from K562 (ENCLB882OLO)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB882OLO
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS234MRO at ENCODE; https://www.encodeproject.org/ENCBS234MRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB021UVV)

description:
https://www.encodeproject.org/experiments/ENCSR450RRS/
***************
biological replicate number: 2
technical replicate number: 1
description: CAPRIN1
experiment encode accession: ENCSR450RRS
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB021UVV

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS045RKC at ENCODE; https://www.encodeproject.org/ENCBS045RKC/


title: proliferation CRISPR screen from K562 (ENCLB065KZK)

description:
https://www.encodeproject.org/experiments/ENCSR680PDZ/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following survival
experiment encode accession: ENCSR680PDZ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB065KZK

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 14 days after the sample was treated with Puromycin

value: Yin Shen, UCSF

value: ENCBS871ZYI at ENCODE; https://www.encodeproject.org/ENCBS871ZYI/


title: proliferation CRISPR screen from K562 (ENCLB512XCS)

description:
https://www.encodeproject.org/experiments/ENCSR680PDZ/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following survival
experiment encode accession: ENCSR680PDZ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB512XCS

value: female

value: ENCBS936TZM at ENCODE; https://www.encodeproject.org/ENCBS936TZM/


title: Flow-FISH CRISPR screen from K562 (ENCLB530LUD)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB530LUD
size range: 200-210

value: adult

value: ENCBS501FCC at ENCODE; https://www.encodeproject.org/ENCBS501FCC/


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB972QOJ)

description:
https://www.encodeproject.org/experiments/ENCSR172RHL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR172RHL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB972QOJ

source_name: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T primary cell, preserved by cryopreservation

value: primary cell

tag: note

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS720OJR at ENCODE; https://www.encodeproject.org/ENCBS720OJR/


title: DNase-seq from HUDEP-2 (ENCLB887FPU)

description:
https://www.encodeproject.org/experiments/ENCSR236AUI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR236AUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887FPU

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS323SXJ at ENCODE; https://www.encodeproject.org/ENCBS323SXJ/


title: PRO-cap from mesenteric fat pad (ENCLB284YSQ)

description:
https://www.encodeproject.org/experiments/ENCSR683FOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mesenteric fat pad.
experiment encode accession: ENCSR683FOJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB284YSQ

value: mesenteric fat pad

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS656PPO at ENCODE; https://www.encodeproject.org/ENCBS656PPO/


title: PRO-cap from testis (ENCLB429AWY)

description:
https://www.encodeproject.org/experiments/ENCSR679CMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR679CMZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB429AWY

source_name: Homo sapiens male adult (54 years) testis tissue

value: testis

value: adult

value: 54 year

value: GTEx

value: ENCBS371UYV at ENCODE; https://www.encodeproject.org/ENCBS371UYV/


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB070DGA)

description:
https://www.encodeproject.org/experiments/ENCSR172RHL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR172RHL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB070DGA

value: primary cell

value: Treg CD3+ CD4+ CD8- CD25+ CD127-

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS720OJR at ENCODE; https://www.encodeproject.org/ENCBS720OJR/


title: DNase-seq from HUDEP-2 (ENCLB232IDR)

description:
https://www.encodeproject.org/experiments/ENCSR236VJW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR236VJW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB232IDR

value: cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS469UNN at ENCODE; https://www.encodeproject.org/ENCBS469UNN/


title: Flow-FISH CRISPR screen from K562 (ENCLB522YQN)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB522YQN
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS234MRO at ENCODE; https://www.encodeproject.org/ENCBS234MRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB133AYD)

description:
https://www.encodeproject.org/experiments/ENCSR450RRS/
***************
biological replicate number: 1
technical replicate number: 1
description: CAPRIN1
experiment encode accession: ENCSR450RRS
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB133AYD

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS457NFP at ENCODE; https://www.encodeproject.org/ENCBS457NFP/


title: Flow-FISH CRISPR screen from K562 (ENCLB606ZUL)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB606ZUL
size range: 200-210


title: FACS CRISPR screen from glutamatergic neuron (ENCLB562FST)

description:
https://www.encodeproject.org/experiments/ENCSR678GDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR678GDA
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR364KFC
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB562FST

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using C...

value: glutamatergic neuron

value: in vitro differentiated cells

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS487AMV at ENCODE; https://www.encodeproject.org/ENCBS487AMV/


title: Flow-FISH CRISPR screen from K562 (ENCLB542VQY)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB542VQY
size range: 200-210

value: cell line

value: ENCBS501FCC at ENCODE; https://www.encodeproject.org/ENCBS501FCC/


title: PRO-cap from testis (ENCLB419KBC)

description:
https://www.encodeproject.org/experiments/ENCSR679CMZ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR679CMZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB419KBC

value: testis

value: tissue

value: male

value: 54 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS371UYV at ENCODE; https://www.encodeproject.org/ENCBS371UYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB517QCT)

description:
https://www.encodeproject.org/experiments/ENCSR443VTK/
***************
biological replicate number: 1,2
technical replicate number: 2,3,4,5,6,7,1
description:
experiment encode accession: ENCSR443VTK
assay title: Flow-FISH CRISPR screen
encode release date: 2025-08-06
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB517QCT
size range: 703-704

source_name: Homo sapiens K562 cell line genetically modified (CRISPRi) using CRISPR

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS780DUX at ENCODE; https://www.encodeproject.org/ENCBS780DUX/


title: DNase-seq from NCI-H2029 (ENCLB777PIH)

description:
https://www.encodeproject.org/experiments/ENCSR228WZM/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR228WZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB777PIH

source_name: Homo sapiens NCI-H2029 cell line

value: 69 year

value: John Stamatoyannopoulos, UW

value: ENCBS944LMW at ENCODE; https://www.encodeproject.org/ENCBS944LMW/


title: DNase-seq from NOMO-1 (ENCLB421REA)

description:
https://www.encodeproject.org/experiments/ENCSR450TDT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR450TDT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB421REA

source_name: Homo sapiens NOMO-1 cell line treated with 0.1% dmso for 144 hours

value: cell line

value: 31 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:144; duration_units:hour;

value: ENCBS019VTH at ENCODE; https://www.encodeproject.org/ENCBS019VTH/


title: Flow-FISH CRISPR screen from K562 (ENCLB446YLJ)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB446YLJ
size range: 200-210

value: ENCBS539DWR at ENCODE; https://www.encodeproject.org/ENCBS539DWR/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB347KGP)

description:
https://www.encodeproject.org/experiments/ENCSR677CYJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR677CYJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB347KGP

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS635HCE at ENCODE; https://www.encodeproject.org/ENCBS635HCE/


title: DNase-seq from HCT116 (ENCLB356FVG)

description:
https://www.encodeproject.org/experiments/ENCSR170ALH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR170ALH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB356FVG

source_name: Homo sapiens HCT116 cell line

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS110RDD at ENCODE; https://www.encodeproject.org/ENCBS110RDD/


title: Flow-FISH CRISPR screen from K562 (ENCLB901MDE)

description:
https://www.encodeproject.org/experiments/ENCSR425RUY/
***************
biological replicate number: 2
technical replicate number: 1
description: MYC
experiment encode accession: ENCSR425RUY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB901MDE

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS449DDD at ENCODE; https://www.encodeproject.org/ENCBS449DDD/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB802ZOR)

description:
https://www.encodeproject.org/experiments/ENCSR677CYJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR677CYJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB802ZOR

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: CD8+ memory CD3+ CD4- CD8+ CD45RA- CD45RO+

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler


title: Flow-FISH CRISPR screen from K562 (ENCLB336UZL)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB336UZL
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS539DWR at ENCODE; https://www.encodeproject.org/ENCBS539DWR/


title: DNase-seq from HCT116 (ENCLB763TJN)

description:
https://www.encodeproject.org/experiments/ENCSR170ALH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR170ALH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB763TJN

value: cell line

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS266DBS at ENCODE; https://www.encodeproject.org/ENCBS266DBS/


title: Flow-FISH CRISPR screen from K562 (ENCLB798OCC)

description:
https://www.encodeproject.org/experiments/ENCSR425RUY/
***************
biological replicate number: 1
technical replicate number: 1
description: MYC
experiment encode accession: ENCSR425RUY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB798OCC

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS161HTN at ENCODE; https://www.encodeproject.org/ENCBS161HTN/


title: Flow-FISH CRISPR screen from K562 (ENCLB860MWA)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860MWA
size range: 200-210

value: adult

value: ENCBS501FCC at ENCODE; https://www.encodeproject.org/ENCBS501FCC/


title: DNase-seq from SKM-1 (ENCLB241ZQL)

description:
https://www.encodeproject.org/experiments/ENCSR433QRR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR433QRR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB241ZQL

source_name: Homo sapiens SKM-1 cell line treated with 0.1% dmso for 144 hours

value: 76 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:144; duration_units:hour;

value: ENCBS970WCI at ENCODE; https://www.encodeproject.org/ENCBS970WCI/


title: PRO-cap from heart left ventricle (ENCLB168JJG)

description:
https://www.encodeproject.org/experiments/ENCSR676YGJ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR676YGJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB168JJG

source_name: Homo sapiens female adult (53 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS844AGC at ENCODE; https://www.encodeproject.org/ENCBS844AGC/


title: DNase-seq from HCT116 (ENCLB007WUN)

description:
https://www.encodeproject.org/experiments/ENCSR170ALH/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR170ALH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007WUN

value: cell line

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS808XVL at ENCODE; https://www.encodeproject.org/ENCBS808XVL/


title: PRO-cap from heart left ventricle (ENCLB364SBL)

description:
https://www.encodeproject.org/experiments/ENCSR676YGJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR676YGJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB364SBL

value: female

value: adult

value: 53 year


title: DNase-seq from HCT116 (ENCLB666UFB)

description:
https://www.encodeproject.org/experiments/ENCSR170ALH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR170ALH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB666UFB

value: ENCBS281TGH at ENCODE; https://www.encodeproject.org/ENCBS281TGH/


title: Flow-FISH CRISPR screen from K562 (ENCLB719KOP)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB719KOP
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS539DWR at ENCODE; https://www.encodeproject.org/ENCBS539DWR/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB544FRX)

description:
https://www.encodeproject.org/experiments/ENCSR678GDA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR678GDA
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR364KFC
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB544FRX

value: glutamatergic neuron

value: in vitro differentiated cells

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS184TLB at ENCODE; https://www.encodeproject.org/ENCBS184TLB/


title: Flow-FISH CRISPR screen from K562 (ENCLB839OHU)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB839OHU
size range: 200-210

value: cell line

value: ENCBS234MRO at ENCODE; https://www.encodeproject.org/ENCBS234MRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB137JBQ)

description:
https://www.encodeproject.org/experiments/ENCSR211TEA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR211TEA
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB137JBQ

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS103NSB at ENCODE; https://www.encodeproject.org/ENCBS103NSB/


title: FACS CRISPR screen from WTC11 (ENCLB879JEL)

description:
https://www.encodeproject.org/experiments/ENCSR669TMQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR669TMQ
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR924HYA
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB879JEL

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens FMR1, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: adult

value: ENCBS508LMW at ENCODE; https://www.encodeproject.org/ENCBS508LMW/


title: DNase-seq from CD14-positive monocyte (ENCLB379VPL)

description:
https://www.encodeproject.org/experiments/ENCSR073CPU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR073CPU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB379VPL

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell treated with 0.1% dmso for 4.5 hours, 100 ng/mL lipopolysaccharide for 4 hours

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour; treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS122AWE at ENCODE; https://www.encodeproject.org/ENCBS122AWE/


title: DNase-seq from HCT116 (ENCLB938DBQ)

description:
https://www.encodeproject.org/experiments/ENCSR671TYL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR671TYL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB938DBQ

value: colorectal carcinoma

value: 48 year

value: Erez Aiden

value: ENCBS688UVM at ENCODE; https://www.encodeproject.org/ENCBS688UVM/


title: Flow-FISH CRISPR screen from K562 (ENCLB790HIC)

description:
https://www.encodeproject.org/experiments/ENCSR074DRW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR074DRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB790HIC
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS501FCC at ENCODE; https://www.encodeproject.org/ENCBS501FCC/


title: DNase-seq from central memory CD8-positive, alpha-beta T cell (ENCLB717CQQ)

description:
https://www.encodeproject.org/experiments/ENCSR665ZKM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR665ZKM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB717CQQ

source_name: Homo sapiens male adult (36 years) central memory CD8-positive, alpha-beta T primary cell

value: primary cell

value: male

value: adult

value: 36 year

value: StemExpress

value: ENCBS252LIY at ENCODE; https://www.encodeproject.org/ENCBS252LIY/


title: DNase-seq from T1000 (ENCLB497RQS)

description:
https://www.encodeproject.org/experiments/ENCSR165VNH/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR165VNH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB497RQS

source_name: Homo sapiens T1000 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Garvan Institute

value: ENCBS764BMA at ENCODE; https://www.encodeproject.org/ENCBS764BMA/


title: PRO-cap from Colon Carcinoma Metastatic in the Lung (ENCLB349XNR)

description:
https://www.encodeproject.org/experiments/ENCSR666GXV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic colon cancer to lung.
experiment encode accession: ENCSR666GXV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB349XNR

source_name: Homo sapiens female adult (73 years) Colon Carcinoma Metastatic in the Lung tissue

value: Colon Carcinoma Metastatic in the Lung

value: tissue

value: 73 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS575SCX at ENCODE; https://www.encodeproject.org/ENCBS575SCX/


title: DNase-seq from K562 (ENCLB095YFR)

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB095YFR
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS124PLV at ENCODE; https://www.encodeproject.org/ENCBS124PLV/


title: DNase-seq from heart (ENCLB953UPS)

description:
https://www.encodeproject.org/experiments/ENCSR989YAW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR989YAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB953UPS

source_name: Homo sapiens male adult (43 years) heart tissue

value: heart

value: male

value: adult

value: 43 year

value: Shin Lin

value: ENCBS905ALF at ENCODE; https://www.encodeproject.org/ENCBS905ALF/


title: DNase-seq from K562 (ENCLB601XXD)

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB601XXD

value: John Stamatoyannopoulos, UW

value: ENCBS839EXS at ENCODE; https://www.encodeproject.org/ENCBS839EXS/


title: DNase-seq from heart (ENCLB674AYY)

description:
https://www.encodeproject.org/experiments/ENCSR989YAW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR989YAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB674AYY

value: tissue

value: ENCBS873PJF at ENCODE; https://www.encodeproject.org/ENCBS873PJF/


title: PRO-cap from cerebral cortex (ENCLB447EJZ)

description:
https://www.encodeproject.org/experiments/ENCSR675RBN/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left frontal of cerebral cortex.
experiment encode accession: ENCSR675RBN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB447EJZ

source_name: Homo sapiens cerebral cortex tissue

value: cerebral cortex

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS687LHA at ENCODE; https://www.encodeproject.org/ENCBS687LHA/


title: PRO-cap from cerebral cortex (ENCLB097AZV)

description:
https://www.encodeproject.org/experiments/ENCSR675RBN/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left frontal of cerebral cortex.
experiment encode accession: ENCSR675RBN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB097AZV


title: FACS CRISPR screen from WTC11 (ENCLB385JOB)

description:
https://www.encodeproject.org/experiments/ENCSR662MTS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR662MTS
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR019PDV
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB385JOB

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: cell line

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS514ZHW at ENCODE; https://www.encodeproject.org/ENCBS514ZHW/


title: DNase-seq from suppressor macrophage (ENCLB170SAF)

description:
https://www.encodeproject.org/experiments/ENCSR983UJS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR983UJS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB170SAF
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: male

value: adult

value: 24 year

value: Shelly Heimfeld

value: ENCBS872WOL at ENCODE; https://www.encodeproject.org/ENCBS872WOL/


title: PRO-cap from Metastatic Lung Carcinoma in the Adrenal Gland (ENCLB324QFK)

description:
https://www.encodeproject.org/experiments/ENCSR673CJC/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic lung cancer to adrenal gland.
experiment encode accession: ENCSR673CJC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB324QFK

source_name: Homo sapiens female adult (54 years) Metastatic Lung Carcinoma in the Adrenal Gland tissue

value: tissue

value: female

value: 54 year

value: CHTN

value: ENCBS432AFP at ENCODE; https://www.encodeproject.org/ENCBS432AFP/


title: DNase-seq from HCT116 (ENCLB883WPB)

description:
https://www.encodeproject.org/experiments/ENCSR671TYL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR671TYL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB883WPB

value: cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS173BEP at ENCODE; https://www.encodeproject.org/ENCBS173BEP/


title: FACS CRISPR screen from WTC11 (ENCLB944NZZ)

description:
https://www.encodeproject.org/experiments/ENCSR669TMQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR669TMQ
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR924HYA
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB944NZZ

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS277MGN at ENCODE; https://www.encodeproject.org/ENCBS277MGN/


title: DNase-seq from HUDEP-2 (ENCLB793LGU)

description:
https://www.encodeproject.org/experiments/ENCSR978CYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR978CYN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB793LGU

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS567FML at ENCODE; https://www.encodeproject.org/ENCBS567FML/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB123AGD)

description:
https://www.encodeproject.org/experiments/ENCSR073PJU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR073PJU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123AGD

source_name: Homo sapiens male adult (42 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell

value: primary cell

value: 42 year

value: AllCells

value: ENCBS623RZA at ENCODE; https://www.encodeproject.org/ENCBS623RZA/


title: DNase-seq from NOMO-1 (ENCLB723RSW)

description:
https://www.encodeproject.org/experiments/ENCSR407GPV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR407GPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB723RSW

source_name: Homo sapiens NOMO-1 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: female

value: 31 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS053NOF at ENCODE; https://www.encodeproject.org/ENCBS053NOF/


title: DNase-seq from CD14-positive monocyte (ENCLB152MTH)

description:
https://www.encodeproject.org/experiments/ENCSR073CPU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR073CPU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB152MTH
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: CD14-positive monocyte

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS440HXN at ENCODE; https://www.encodeproject.org/ENCBS440HXN/


title: Flow-FISH CRISPR screen from K562 (ENCLB865CWB)

description:
https://www.encodeproject.org/experiments/ENCSR974YJG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR974YJG
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB865CWB

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS772TIF at ENCODE; https://www.encodeproject.org/ENCBS772TIF/


title: DNase-seq from K562 (ENCLB555STA)

description:
https://www.encodeproject.org/experiments/ENCSR070GSY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR070GSY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB555STA

value: cell line

value: female

value: ENCBS088QNC at ENCODE; https://www.encodeproject.org/ENCBS088QNC/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB966IHG)

description:
https://www.encodeproject.org/experiments/ENCSR066BYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR066BYY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB966IHG

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-7 for 24 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: AllCells

value: treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS167HKV at ENCODE; https://www.encodeproject.org/ENCBS167HKV/


title: DNase-seq from T1000 (ENCLB629CHA)

description:
https://www.encodeproject.org/experiments/ENCSR165VNH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR165VNH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB629CHA

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Garvan Institute

value: ENCBS047BGK at ENCODE; https://www.encodeproject.org/ENCBS047BGK/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB512DVA)

description:
https://www.encodeproject.org/experiments/ENCSR071ZVJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR071ZVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB512DVA

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS372DKT at ENCODE; https://www.encodeproject.org/ENCBS372DKT/


title: DNase-seq from T1000 (ENCLB734FKV)

description:
https://www.encodeproject.org/experiments/ENCSR165VNH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR165VNH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB734FKV

value: cell line

value: ENCBS049HFY at ENCODE; https://www.encodeproject.org/ENCBS049HFY/


title: PRO-cap from kidney (ENCLB730IXD)

description:
https://www.encodeproject.org/experiments/ENCSR660UDB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Kidney.
experiment encode accession: ENCSR660UDB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB730IXD

source_name: Homo sapiens female adult (53 years) kidney tissue

value: kidney

value: tissue

value: female

value: 53 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS990UCT at ENCODE; https://www.encodeproject.org/ENCBS990UCT/


title: PRO-cap from left lung (ENCLB714KKS)

description:
https://www.encodeproject.org/experiments/ENCSR659YNL/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left lung.
experiment encode accession: ENCSR659YNL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB714KKS

source_name: Homo sapiens male adult (40 years) left lung tissue

value: left lung

value: male

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: ENCBS638KJS at ENCODE; https://www.encodeproject.org/ENCBS638KJS/


title: DNase-seq from HUDEP-2 (ENCLB595GQS)

description:
https://www.encodeproject.org/experiments/ENCSR073BNC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR073BNC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB595GQS

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS829MEU at ENCODE; https://www.encodeproject.org/ENCBS829MEU/


title: DNase-seq from T1000 (ENCLB502WNY)

description:
https://www.encodeproject.org/experiments/ENCSR165VNH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR165VNH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB502WNY

source_name: Homo sapiens T1000 cell line

value: cell line

value: Garvan Institute

value: ENCBS559WIB at ENCODE; https://www.encodeproject.org/ENCBS559WIB/


title: PRO-cap from left lung (ENCLB116LPB)

description:
https://www.encodeproject.org/experiments/ENCSR659YNL/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left lung.
experiment encode accession: ENCSR659YNL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB116LPB

value: tissue


title: Flow-FISH CRISPR screen from K562 (ENCLB967CYX)

description:
https://www.encodeproject.org/experiments/ENCSR974YJG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR974YJG
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB967CYX

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS713OKM at ENCODE; https://www.encodeproject.org/ENCBS713OKM/


title: DNase-seq from UT-7 (ENCLB544FWZ)

description:
https://www.encodeproject.org/experiments/ENCSR964IYB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR964IYB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB544FWZ

source_name: Homo sapiens UT-7 cell line

value: male

value: 64 year

value: DSMZ

value: ENCBS493MYB at ENCODE; https://www.encodeproject.org/ENCBS493MYB/


title: FACS CRISPR screen from WTC11 (ENCLB249GFI)

description:
https://www.encodeproject.org/experiments/ENCSR659YFO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR659YFO
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR418JRB
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB249GFI

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: adult

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS946HPB at ENCODE; https://www.encodeproject.org/ENCBS946HPB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB840TZS)

description:
https://www.encodeproject.org/experiments/ENCSR071ZVJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR071ZVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB840TZS

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS305CKU at ENCODE; https://www.encodeproject.org/ENCBS305CKU/


title: FACS CRISPR screen from WTC11 (ENCLB539VBF)

description:
https://www.encodeproject.org/experiments/ENCSR662MTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR662MTS
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR019PDV
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB539VBF

value: cell line

value: ENCBS806UIQ at ENCODE; https://www.encodeproject.org/ENCBS806UIQ/


title: proliferation CRISPR screen from K562 (ENCLB387PCC)

description:
https://www.encodeproject.org/experiments/ENCSR162HMH/
***************
biological replicate number: 3
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen all >100,000 putative non-coding regulatory elements defined by open chromatin sites in human K562 leukemia cells for their role in regulating essential cellular processes (whole genome).
experiment encode accession: ENCSR162HMH
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR625TAF
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB387PCC

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS370SPY at ENCODE; https://www.encodeproject.org/ENCBS370SPY/


title: STARR-seq from K562 (ENCLB484AID)

description:
https://www.encodeproject.org/experiments/ENCSR926NDZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR926NDZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR009QZL
encode release date: 2024-02-05
lab: Tim Reddy, Duke
library encode accession: ENCLB484AID
size range: 300-800

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

extract_protocol:
general protocol: https://www.encodeproject.org/documents/038fa17f-2a0b-4ece-87c9-a85783d5f950/@@download/attachment/01_input_library_generation_detailed_KPS_2021.pdf
extraction method: RNeasy

value: adult

value: ENCBS581KMF at ENCODE; https://www.encodeproject.org/ENCBS581KMF/


title: Flow-FISH CRISPR screen from K562 (ENCLB945WUR)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB945WUR
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS928YXE at ENCODE; https://www.encodeproject.org/ENCBS928YXE/


title: DNase-seq from K562 (ENCLB564UKT)

description:
https://www.encodeproject.org/experiments/ENCSR070GSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR070GSY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB564UKT

source_name: Homo sapiens K562 cell line

value: ENCBS088QNC at ENCODE; https://www.encodeproject.org/ENCBS088QNC/