title: DNase-seq from MCF-7 (ENCLB097GEH)

description:
https://www.encodeproject.org/experiments/ENCSR950VDM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR950VDM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB097GEH
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM genistein for 2 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS978TNR at ENCODE; https://www.encodeproject.org/ENCBS978TNR/


title: DNase-seq from T47D (ENCLB275IQH)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR937PIT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR937PIT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB275IQH

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens T47D cell line treated with 10 nM 17 beta estradiol for 2 hours

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: mammary ductal carcinoma

tag: dev stage

value: adult

tag: age

value: 54 year

tag: lab

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:16469; treatment_term_name:17 beta estradiol; treatment_type:chemical; duration:2; duration_units:hour;

tag: link

value: ENCBS323OFA at ENCODE; https://www.encodeproject.org/ENCBS323OFA/


title: DNase-seq from MCF-7 (ENCLB940WVP)

description:
https://www.encodeproject.org/experiments/ENCSR950VDM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR950VDM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB940WVP

value: 69 year

value: ENCBS653GEE at ENCODE; https://www.encodeproject.org/ENCBS653GEE/


title: DNase-seq from K562 (ENCLB359JAP)

description:
https://www.encodeproject.org/experiments/ENCSR950OFC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR950OFC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB359JAP

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS213OSA at ENCODE; https://www.encodeproject.org/ENCBS213OSA/


title: DNase-seq from T47D (ENCLB285QXY)

description:
https://www.encodeproject.org/experiments/ENCSR946HTA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR946HTA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB285QXY

source_name: Homo sapiens T47D cell line treated with 10 uM methoxychlor for 2 hours

value: cell line

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS858FRB at ENCODE; https://www.encodeproject.org/ENCBS858FRB/


title: DNase-seq from T47D (ENCLB708MOY)

description:
https://www.encodeproject.org/experiments/ENCSR948LTO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR948LTO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB708MOY

source_name: Homo sapiens T47D cell line treated with 4 uM bisphenol a for 504 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS134KFZ at ENCODE; https://www.encodeproject.org/ENCBS134KFZ/


title: DNase-seq from CD14-positive monocyte (ENCLB171DYB)

description:
https://www.encodeproject.org/experiments/ENCSR906STR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR906STR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB171DYB

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS687ZOI at ENCODE; https://www.encodeproject.org/ENCBS687ZOI/


title: DNase-seq from T47D (ENCLB670OTJ)

description:
https://www.encodeproject.org/experiments/ENCSR914YGK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR914YGK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB670OTJ

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 504 hours

value: female

value: mammary ductal carcinoma

value: adult

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS380YVB at ENCODE; https://www.encodeproject.org/ENCBS380YVB/


title: DNase-seq from suppressor macrophage (ENCLB707MJA)

description:
https://www.encodeproject.org/experiments/ENCSR930UXG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR930UXG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB707MJA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: 40 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS603YDM at ENCODE; https://www.encodeproject.org/ENCBS603YDM/


title: DNase-seq from CD14-positive monocyte (ENCLB198SIJ)

description:
https://www.encodeproject.org/experiments/ENCSR913VNJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR913VNJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB198SIJ
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: CD14-positive monocyte

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS860EVQ at ENCODE; https://www.encodeproject.org/ENCBS860EVQ/


title: DNase-seq from MCF-7 (ENCLB913ECQ)

description:
https://www.encodeproject.org/experiments/ENCSR941MZU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR941MZU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB913ECQ

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 504 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS556MST at ENCODE; https://www.encodeproject.org/ENCBS556MST/


title: DNase-seq from K562 (ENCLB429SDG)

description:
https://www.encodeproject.org/experiments/ENCSR946BYE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR946BYE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB429SDG

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS902OSQ at ENCODE; https://www.encodeproject.org/ENCBS902OSQ/


title: DNase-seq from MCF-7 (ENCLB929GJK)

description:
https://www.encodeproject.org/experiments/ENCSR936YZZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR936YZZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB929GJK

source_name: Homo sapiens MCF-7 cell line treated with 1 uM bisphenol a for 504 hours

value: ATCC

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS670IFV at ENCODE; https://www.encodeproject.org/ENCBS670IFV/


title: DNase-seq from OCI-M2 (ENCLB941NVO)

description:
https://www.encodeproject.org/experiments/ENCSR916WCV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR916WCV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB941NVO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens OCI-M2 cell line

value: not collected

value: 56 year

value: DSMZ

value: ENCBS784VWG at ENCODE; https://www.encodeproject.org/ENCBS784VWG/


title: DNase-seq from MCF-7 (ENCLB874TSF)

description:
https://www.encodeproject.org/experiments/ENCSR914NYH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR914NYH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB874TSF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM genistein for 120 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS295JAY at ENCODE; https://www.encodeproject.org/ENCBS295JAY/


title: DNase-seq from AML-193 (ENCLB377RVQ)

description:
https://www.encodeproject.org/experiments/ENCSR897GRM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR897GRM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB377RVQ

source_name: Homo sapiens AML-193 cell line

value: cell line

value: 13 year

value: ENCBS150GZW at ENCODE; https://www.encodeproject.org/ENCBS150GZW/


title: DNase-seq from T47D (ENCLB626WID)

description:
https://www.encodeproject.org/experiments/ENCSR900NYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR900NYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB626WID

source_name: Homo sapiens T47D cell line treated with 50 nM bisphenol a for 2 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS221CDK at ENCODE; https://www.encodeproject.org/ENCBS221CDK/


title: DNase-seq from T47D (ENCLB116WZQ)

description:
https://www.encodeproject.org/experiments/ENCSR901CEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR901CEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB116WZQ

source_name: Homo sapiens T47D cell line treated with 10 nM genistein for 504 hours

value: adult

value: ATCC

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS157UEV at ENCODE; https://www.encodeproject.org/ENCBS157UEV/


title: DNase-seq from MCF-7 (ENCLB672IDK)

description:
https://www.encodeproject.org/experiments/ENCSR919HBQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR919HBQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB672IDK

source_name: Homo sapiens MCF-7 cell line treated with 1 uM methoxychlor for 120 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS320LCN at ENCODE; https://www.encodeproject.org/ENCBS320LCN/


title: DNase-seq from inflammatory macrophage (ENCLB926LTE)

description:
https://www.encodeproject.org/experiments/ENCSR906FTC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR906FTC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB926LTE

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: male

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS938MJB at ENCODE; https://www.encodeproject.org/ENCBS938MJB/


title: DNase-seq from suppressor macrophage (ENCLB752RIV)

description:
https://www.encodeproject.org/experiments/ENCSR924DAW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR924DAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB752RIV

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell treated with 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS853MGY at ENCODE; https://www.encodeproject.org/ENCBS853MGY/


title: DNase-seq from occipital lobe (ENCLB505LJQ)

description:
https://www.encodeproject.org/experiments/ENCSR905UAW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR905UAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB505LJQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (87 years) occipital lobe tissue

value: occipital lobe

value: tissue

value: adult

value: 87 year

value: Thomas Montine

value: ENCBS375BRH at ENCODE; https://www.encodeproject.org/ENCBS375BRH/


title: DNase-seq from Kasumi-1 (ENCLB271CDD)

description:
https://www.encodeproject.org/experiments/ENCSR899GGO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR899GGO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB271CDD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens Kasumi-1 cell line

value: cell line

value: child

value: 7 week

value: ATCC

value: ENCBS385RRI at ENCODE; https://www.encodeproject.org/ENCBS385RRI/


title: DNase-seq from T47D (ENCLB329AQC)

description:
https://www.encodeproject.org/experiments/ENCSR952MLE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR952MLE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329AQC

source_name: Homo sapiens T47D cell line treated with 4 nM bisphenol a for 2 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS873HUH at ENCODE; https://www.encodeproject.org/ENCBS873HUH/


title: DNase-seq from CD14-positive monocyte (ENCLB777HWH)

description:
https://www.encodeproject.org/experiments/ENCSR889CFS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR889CFS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB777HWH
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 40 year

value: Shelly Heimfeld

value: ENCBS548LAZ at ENCODE; https://www.encodeproject.org/ENCBS548LAZ/


title: DNase-seq from AML-193 (ENCLB191FPE)

description:
https://www.encodeproject.org/experiments/ENCSR897GRM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR897GRM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB191FPE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: adult

value: 13 year

value: ENCBS109QTX at ENCODE; https://www.encodeproject.org/ENCBS109QTX/


title: DNase-seq from DMS 273 (ENCLB317GON)

description:
https://www.encodeproject.org/experiments/ENCSR885PNE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR885PNE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB317GON
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens DMS 273 cell line treated with 0.1% DMSO for 48 hours

value: DMS 273

value: 50 year

value: ECACC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS463EUJ at ENCODE; https://www.encodeproject.org/ENCBS463EUJ/


title: DNase-seq from DMS 273 (ENCLB610PZY)

description:
https://www.encodeproject.org/experiments/ENCSR885PNE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR885PNE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB610PZY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS114BTH at ENCODE; https://www.encodeproject.org/ENCBS114BTH/


title: DNase-seq from NCI-H524 (ENCLB740PAZ)

description:
https://www.encodeproject.org/experiments/ENCSR881NZC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR881NZC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB740PAZ

source_name: Homo sapiens NCI-H524 cell line

value: 63 year

value: ATCC

value: ENCBS116UPA at ENCODE; https://www.encodeproject.org/ENCBS116UPA/


title: DNase-seq from NCI-H524 (ENCLB599LGK)

description:
https://www.encodeproject.org/experiments/ENCSR881NZC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR881NZC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB599LGK
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: male

value: ENCBS992BOS at ENCODE; https://www.encodeproject.org/ENCBS992BOS/


title: DNase-seq from MCF-7 (ENCLB189DPZ)

description:
https://www.encodeproject.org/experiments/ENCSR877ISD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR877ISD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB189DPZ

source_name: Homo sapiens MCF-7 cell line

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS943ZQL at ENCODE; https://www.encodeproject.org/ENCBS943ZQL/


title: DNase-seq from T47D (ENCLB976LDD)

description:
https://www.encodeproject.org/experiments/ENCSR874VGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR874VGY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB976LDD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM diethylstilbestrol for 2 hours

value: mammary ductal carcinoma

value: adult

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS953UEW at ENCODE; https://www.encodeproject.org/ENCBS953UEW/


title: DNase-seq from MCF-7 (ENCLB319KUV)

description:
https://www.encodeproject.org/experiments/ENCSR865KRO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR865KRO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB319KUV

value: female

value: ENCBS837PZK at ENCODE; https://www.encodeproject.org/ENCBS837PZK/


title: DNase-seq from inflammatory macrophage (ENCLB242UGA)

description:
https://www.encodeproject.org/experiments/ENCSR866LHK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR866LHK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB242UGA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS116FHI at ENCODE; https://www.encodeproject.org/ENCBS116FHI/


title: DNase-seq from NCI-H1417 (ENCLB851FRB)

description:
https://www.encodeproject.org/experiments/ENCSR850HTW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR850HTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB851FRB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H1417 cell line

value: cell line

value: 61 year

value: ATCC

value: ENCBS081MXD at ENCODE; https://www.encodeproject.org/ENCBS081MXD/


title: DNase-seq from MCF-7 (ENCLB733YYI)

description:
https://www.encodeproject.org/experiments/ENCSR851KRV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR851KRV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB733YYI
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 504 hours

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS890KTB at ENCODE; https://www.encodeproject.org/ENCBS890KTB/


title: DNase-seq from SKM-1 (ENCLB324SPY)

description:
https://www.encodeproject.org/experiments/ENCSR881NJY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR881NJY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB324SPY

source_name: Homo sapiens SKM-1 cell line

value: male

value: 76 year

value: DSMZ

value: ENCBS739ARV at ENCODE; https://www.encodeproject.org/ENCBS739ARV/


title: DNase-seq from NCI-H1417 (ENCLB073VDT)

description:
https://www.encodeproject.org/experiments/ENCSR850HTW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR850HTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB073VDT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS337YSF at ENCODE; https://www.encodeproject.org/ENCBS337YSF/


title: DNase-seq from NCI-H1417 (ENCLB257BRT)

description:
https://www.encodeproject.org/experiments/ENCSR850HTW/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR850HTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB257BRT

value: ENCBS485FLO at ENCODE; https://www.encodeproject.org/ENCBS485FLO/


title: DNase-seq from suppressor macrophage (ENCLB754IMG)

description:
https://www.encodeproject.org/experiments/ENCSR837KQM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837KQM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB754IMG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 24 hours

value: suppressor macrophage

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS530WGZ at ENCODE; https://www.encodeproject.org/ENCBS530WGZ/


title: DNase-seq from adrenal gland (ENCLB572XMI)

description:
https://www.encodeproject.org/experiments/ENCSR833DYD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR833DYD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572XMI

source_name: Homo sapiens male embryo (108 days) adrenal gland tissue

value: adrenal gland

value: tissue

value: embryonic

value: 108 day

value: Ian Glass

value: ENCBS121GXJ at ENCODE; https://www.encodeproject.org/ENCBS121GXJ/


title: DNase-seq from NCI-H1417 (ENCLB574KXQ)

description:
https://www.encodeproject.org/experiments/ENCSR850HTW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR850HTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB574KXQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: adult

value: 61 year

value: ATCC

value: ENCBS087FMZ at ENCODE; https://www.encodeproject.org/ENCBS087FMZ/


title: DNase-seq from K562 (ENCLB479AIX)

description:
https://www.encodeproject.org/experiments/ENCSR844SKG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR844SKG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB479AIX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens K562 cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS052DPU at ENCODE; https://www.encodeproject.org/ENCBS052DPU/


title: DNase-seq from NCI-H1417 (ENCLB785WIF)

description:
https://www.encodeproject.org/experiments/ENCSR850HTW/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR850HTW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB785WIF

value: ENCBS683IZL at ENCODE; https://www.encodeproject.org/ENCBS683IZL/


title: DNase-seq from NCI-H345 (ENCLB381AMO)

description:
https://www.encodeproject.org/experiments/ENCSR864JKT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR864JKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB381AMO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H345 cell line treated with 0.1% DMSO for 48 hours

value: male

value: 64 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS272YPS at ENCODE; https://www.encodeproject.org/ENCBS272YPS/


title: DNase-seq from midbrain (ENCLB414PEG)

description:
https://www.encodeproject.org/experiments/ENCSR816DPN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR816DPN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB414PEG

source_name: Homo sapiens female adult (90 or above years) midbrain tissue

value: midbrain

value: tissue

value: 90 or above year

value: Thomas Montine

value: ENCBS039OFM at ENCODE; https://www.encodeproject.org/ENCBS039OFM/


title: DNase-seq from brain (ENCLB919FJV)

description:
https://www.encodeproject.org/experiments/ENCSR819UGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR819UGJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB919FJV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens female adult (90 or above years) brain tissue

value: brain

value: adult

value: ENCBS018ALF at ENCODE; https://www.encodeproject.org/ENCBS018ALF/


title: DNase-seq from T47D (ENCLB651YSC)

description:
https://www.encodeproject.org/experiments/ENCSR821UFQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR821UFQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB651YSC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM genistein for 2 hours

value: cell line

value: female

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS736IME at ENCODE; https://www.encodeproject.org/ENCBS736IME/


title: DNase-seq from MCF-7 (ENCLB810DLW)

description:
https://www.encodeproject.org/experiments/ENCSR801WOS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR801WOS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB810DLW

source_name: Homo sapiens MCF-7 cell line treated with 1 nM diethylstilbestrol for 2 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS776FQH at ENCODE; https://www.encodeproject.org/ENCBS776FQH/


title: DNase-seq from T47D (ENCLB484XTQ)

description:
https://www.encodeproject.org/experiments/ENCSR873KPG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873KPG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB484XTQ

source_name: Homo sapiens T47D cell line

value: ENCBS439LHV at ENCODE; https://www.encodeproject.org/ENCBS439LHV/


title: DNase-seq from inflammatory macrophage (ENCLB973CSX)

description:
https://www.encodeproject.org/experiments/ENCSR862FLW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR862FLW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB973CSX
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: male

value: 40 year

value: Shelly Heimfeld

value: ENCBS442XHS at ENCODE; https://www.encodeproject.org/ENCBS442XHS/


title: DNase-seq from T47D (ENCLB751SSS)

description:
https://www.encodeproject.org/experiments/ENCSR798KFF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR798KFF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB751SSS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM diethylstilbestrol for 2 hours

value: cell line

value: female

value: mammary ductal carcinoma

value: adult

value: ENCBS755OWB at ENCODE; https://www.encodeproject.org/ENCBS755OWB/


title: DNase-seq from AML-193 (ENCLB890PEG)

description:
https://www.encodeproject.org/experiments/ENCSR793EQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR793EQP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB890PEG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens AML-193 cell line

value: 13 year

value: ATCC

value: ENCBS380MZB at ENCODE; https://www.encodeproject.org/ENCBS380MZB/


title: DNase-seq from T47D (ENCLB241LGG)

description:
https://www.encodeproject.org/experiments/ENCSR783DIV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR783DIV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB241LGG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 uM methoxychlor for 2 hours

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS764WOR at ENCODE; https://www.encodeproject.org/ENCBS764WOR/


title: DNase-seq from UT-7 (ENCLB792JHJ)

description:
https://www.encodeproject.org/experiments/ENCSR846ADQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR846ADQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB792JHJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens UT-7 cell line treated with 0.1% dmso for 144 hours

value: 64 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:144; duration_units:hour;

value: ENCBS566HOI at ENCODE; https://www.encodeproject.org/ENCBS566HOI/


title: DNase-seq from MCF-7 (ENCLB039MIU)

description:
https://www.encodeproject.org/experiments/ENCSR793VMR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR793VMR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB039MIU

source_name: Homo sapiens MCF-7 cell line treated with 10 nM 17 beta estradiol for 2 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:16469; treatment_term_name:17 beta estradiol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS091CVE at ENCODE; https://www.encodeproject.org/ENCBS091CVE/


title: DNase-seq from AML-193 (ENCLB679JOF)

description:
https://www.encodeproject.org/experiments/ENCSR793EQP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR793EQP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB679JOF

value: cell line

value: female

value: adult

value: ENCBS820ISP at ENCODE; https://www.encodeproject.org/ENCBS820ISP/


title: DNase-seq from NCI-H1930 (ENCLB224RAR)

description:
https://www.encodeproject.org/experiments/ENCSR782VNC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR782VNC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB224RAR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H1930 cell line

value: male

value: 41 year

value: ATCC

value: ENCBS080OIS at ENCODE; https://www.encodeproject.org/ENCBS080OIS/


title: DNase-seq from NCI-H1930 (ENCLB124FEC)

description:
https://www.encodeproject.org/experiments/ENCSR782VNC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR782VNC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB124FEC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: John Stamatoyannopoulos, UW

value: ENCBS047PSA at ENCODE; https://www.encodeproject.org/ENCBS047PSA/


title: DNase-seq from MCF-7 (ENCLB106DCX)

description:
https://www.encodeproject.org/experiments/ENCSR792TSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR792TSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB106DCX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 1 nM diethylstilbestrol for 120 hours

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS017AXK at ENCODE; https://www.encodeproject.org/ENCBS017AXK/


title: DNase-seq from MCF-7 (ENCLB723WXE)

description:
https://www.encodeproject.org/experiments/ENCSR771IMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR771IMA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB723WXE

source_name: Homo sapiens MCF-7 cell line

value: ENCBS597GCT at ENCODE; https://www.encodeproject.org/ENCBS597GCT/


title: DNase-seq from common myeloid progenitor, CD34-positive (ENCLB845POH)

description:
https://www.encodeproject.org/experiments/ENCSR807KAK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR807KAK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845POH

source_name: Homo sapiens male adult (52 years) common myeloid progenitor, CD34-positive primary cell

value: primary cell

value: 52 year

value: Shelly Heimfeld

value: ENCBS937GMN at ENCODE; https://www.encodeproject.org/ENCBS937GMN/


title: DNase-seq from CD14-positive monocyte (ENCLB244TXI)

description:
https://www.encodeproject.org/experiments/ENCSR781KKA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR781KKA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB244TXI
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: CD14-positive monocyte

value: 40 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS633MII at ENCODE; https://www.encodeproject.org/ENCBS633MII/


title: DNase-seq from NCI-H1930 (ENCLB572YKW)

description:
https://www.encodeproject.org/experiments/ENCSR782VNC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR782VNC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572YKW
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: male

value: adult

value: ENCBS937QDT at ENCODE; https://www.encodeproject.org/ENCBS937QDT/


title: DNase-seq from NCI-H1417 (ENCLB875WXQ)

description:
https://www.encodeproject.org/experiments/ENCSR750JXL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR750JXL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB875WXQ

source_name: Homo sapiens NCI-H1417 cell line

value: female

value: 61 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS502IYO at ENCODE; https://www.encodeproject.org/ENCBS502IYO/


title: DNase-seq from T47D (ENCLB017TUO)

description:
https://www.encodeproject.org/experiments/ENCSR768RXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR768RXT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB017TUO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS955XRH at ENCODE; https://www.encodeproject.org/ENCBS955XRH/


title: DNase-seq from NCI-H1417 (ENCLB386FUG)

description:
https://www.encodeproject.org/experiments/ENCSR750JXL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR750JXL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB386FUG

value: ENCBS058GYR at ENCODE; https://www.encodeproject.org/ENCBS058GYR/


title: DNase-seq from suppressor macrophage (ENCLB131YLN)

description:
https://www.encodeproject.org/experiments/ENCSR765EPO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR765EPO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB131YLN
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: 40 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS975EBD at ENCODE; https://www.encodeproject.org/ENCBS975EBD/


title: DNase-seq from MCF-7 (ENCLB847TNL)

description:
https://www.encodeproject.org/experiments/ENCSR801WOS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR801WOS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847TNL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: ENCBS278QVE at ENCODE; https://www.encodeproject.org/ENCBS278QVE/


title: DNase-seq from T47D (ENCLB075LZF)

description:
https://www.encodeproject.org/experiments/ENCSR763RBN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR763RBN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB075LZF

source_name: Homo sapiens T47D cell line treated with 10 nM diethylstilbestrol for 504 hours

value: female

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS717PLO at ENCODE; https://www.encodeproject.org/ENCBS717PLO/


title: DNase-seq from T47D (ENCLB112EVD)

description:
https://www.encodeproject.org/experiments/ENCSR736LZX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736LZX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB112EVD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 uM methoxychlor for 2 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS106QOM at ENCODE; https://www.encodeproject.org/ENCBS106QOM/


title: DNase-seq from Kasumi-1 (ENCLB254SPA)

description:
https://www.encodeproject.org/experiments/ENCSR744OJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR744OJL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB254SPA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens Kasumi-1 cell line

value: male

value: child

value: 7 week

value: ENCBS979UCW at ENCODE; https://www.encodeproject.org/ENCBS979UCW/


title: DNase-seq from MCF-7 (ENCLB826KHI)

description:
https://www.encodeproject.org/experiments/ENCSR736LVS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736LVS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB826KHI
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 10 nM diethylstilbestrol for 504 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: ENCBS108VHR at ENCODE; https://www.encodeproject.org/ENCBS108VHR/


title: DNase-seq from MCF-7 (ENCLB146SJJ)

description:
https://www.encodeproject.org/experiments/ENCSR736LVS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR736LVS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB146SJJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: adult

value: 69 year

value: ENCBS262XGA at ENCODE; https://www.encodeproject.org/ENCBS262XGA/


title: DNase-seq from Kasumi-1 (ENCLB023DMW)

description:
https://www.encodeproject.org/experiments/ENCSR744OJL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR744OJL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB023DMW

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS705SME at ENCODE; https://www.encodeproject.org/ENCBS705SME/


title: DNase-seq from MCF-7 (ENCLB822USP)

description:
https://www.encodeproject.org/experiments/ENCSR736LVS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR736LVS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB822USP
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;


title: DNase-seq from KG1 (ENCLB428SMF)

description:
https://www.encodeproject.org/experiments/ENCSR719XPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719XPR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB428SMF

source_name: Homo sapiens KG1 cell line

value: 59 year

value: ENCBS132JJX at ENCODE; https://www.encodeproject.org/ENCBS132JJX/


title: DNase-seq from UT-7 (ENCLB267BXG)

description:
https://www.encodeproject.org/experiments/ENCSR732TYX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR732TYX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB267BXG

source_name: Homo sapiens UT-7 cell line

value: male

value: 64 year

value: DSMZ

value: ENCBS704RXD at ENCODE; https://www.encodeproject.org/ENCBS704RXD/


title: DNase-seq from common myeloid progenitor, CD34-positive (ENCLB563QYX)

description:
https://www.encodeproject.org/experiments/ENCSR722QLI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR722QLI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB563QYX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens common myeloid progenitor, CD34-positive primary cell

value: primary cell

value: not collected

value: unknown

value: Shelly Heimfeld

value: ENCBS882LVY at ENCODE; https://www.encodeproject.org/ENCBS882LVY/


title: DNase-seq from suppressor macrophage (ENCLB600ACB)

description:
https://www.encodeproject.org/experiments/ENCSR730ACX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR730ACX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB600ACB

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell treated with 0.1% dmso for 0.5 hours

value: suppressor macrophage

value: adult

value: 21 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:0.5; duration_units:hour;

value: ENCBS280HZS at ENCODE; https://www.encodeproject.org/ENCBS280HZS/


title: DNase-seq from MCF-7 (ENCLB510FGQ)

description:
https://www.encodeproject.org/experiments/ENCSR719NFU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719NFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB510FGQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS386NEV at ENCODE; https://www.encodeproject.org/ENCBS386NEV/


title: DNase-seq from T47D (ENCLB152HUS)

description:
https://www.encodeproject.org/experiments/ENCSR730DKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR730DKS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB152HUS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM methoxychlor for 120 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS524BVO at ENCODE; https://www.encodeproject.org/ENCBS524BVO/


title: DNase-seq from K562 (ENCLB780MZL)

description:
https://www.encodeproject.org/experiments/ENCSR719SDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719SDH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB780MZL

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS587PLR at ENCODE; https://www.encodeproject.org/ENCBS587PLR/


title: DNase-seq from inflammatory macrophage (ENCLB116AAP)

description:
https://www.encodeproject.org/experiments/ENCSR715DPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR715DPJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB116AAP

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: male

value: adult

value: 40 year

value: Shelly Heimfeld

value: ENCBS594ITQ at ENCODE; https://www.encodeproject.org/ENCBS594ITQ/


title: DNase-seq from MCF-7 (ENCLB735VOG)

description:
https://www.encodeproject.org/experiments/ENCSR719NFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719NFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB735VOG

value: cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: ENCBS907NYV at ENCODE; https://www.encodeproject.org/ENCBS907NYV/


title: DNase-seq from GDM1 (ENCLB431WZM)

description:
https://www.encodeproject.org/experiments/ENCSR705NFY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR705NFY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB431WZM
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens GDM1 cell line

value: 66 year

value: Kristin Ardlie

value: ENCBS385YOF at ENCODE; https://www.encodeproject.org/ENCBS385YOF/


title: DNase-seq from inflammatory macrophage (ENCLB655VUF)

description:
https://www.encodeproject.org/experiments/ENCSR741KNG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR741KNG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB655VUF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS317AAV at ENCODE; https://www.encodeproject.org/ENCBS317AAV/


title: DNase-seq from kidney glomerular epithelial cell (ENCLB731VJK)

description:
https://www.encodeproject.org/experiments/ENCSR704QAK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR704QAK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB731VJK

source_name: Homo sapiens female adult (90 or above years) kidney glomerular epithelial primary cell

value: kidney glomerular epithelial cell

value: primary cell

value: 90 or above year

value: John Stamatoyannopoulos

value: ENCBS536NLI at ENCODE; https://www.encodeproject.org/ENCBS536NLI/


title: DNase-seq from MCF-7 (ENCLB359OMU)

description:
https://www.encodeproject.org/experiments/ENCSR692MSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR692MSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB359OMU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line

value: adult

value: ATCC

value: ENCBS753JHP at ENCODE; https://www.encodeproject.org/ENCBS753JHP/


title: DNase-seq from brain (ENCLB708YWB)

description:
https://www.encodeproject.org/experiments/ENCSR182NVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR182NVY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB708YWB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens female adult (90 or above years) brain tissue

value: brain

value: tissue

value: female

value: Thomas Montine

value: ENCBS825CMG at ENCODE; https://www.encodeproject.org/ENCBS825CMG/


title: DNase-seq from suppressor macrophage (ENCLB212RYN)

description:
https://www.encodeproject.org/experiments/ENCSR694OIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR694OIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB212RYN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 1.5 hours

value: suppressor macrophage

value: male

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:1.5; duration_units:hour;

value: ENCBS638BPJ at ENCODE; https://www.encodeproject.org/ENCBS638BPJ/


title: DNase-seq from KG1 (ENCLB161GYC)

description:
https://www.encodeproject.org/experiments/ENCSR719XPR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719XPR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161GYC

value: cell line

value: 59 year

value: ENCBS454QOY at ENCODE; https://www.encodeproject.org/ENCBS454QOY/


title: DNase-seq from inflammatory macrophage (ENCLB143LFX)

description:
https://www.encodeproject.org/experiments/ENCSR184EVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR184EVK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB143LFX

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: adult

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS827UJX at ENCODE; https://www.encodeproject.org/ENCBS827UJX/


title: DNase-seq from brain (ENCLB397EDC)

description:
https://www.encodeproject.org/experiments/ENCSR181VRE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR181VRE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB397EDC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (82 years) brain tissue

value: brain

value: tissue

value: 82 year

value: Thomas Montine

value: ENCBS465QJO at ENCODE; https://www.encodeproject.org/ENCBS465QJO/


title: DNase-seq from MCF-7 (ENCLB000XAT)

description:
https://www.encodeproject.org/experiments/ENCSR692MSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR692MSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB000XAT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 10 nM diethylstilbestrol for 120 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS184PGL at ENCODE; https://www.encodeproject.org/ENCBS184PGL/


title: DNase-seq from inflammatory macrophage (ENCLB893BLH)

description:
https://www.encodeproject.org/experiments/ENCSR687GAA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR687GAA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB893BLH

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 24 hours

value: inflammatory macrophage

value: male

value: 40 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS494PQE at ENCODE; https://www.encodeproject.org/ENCBS494PQE/


title: DNase-seq from suppressor macrophage (ENCLB198UWX)

description:
https://www.encodeproject.org/experiments/ENCSR179UUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR179UUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB198UWX

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: adult

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS397VBW at ENCODE; https://www.encodeproject.org/ENCBS397VBW/


title: DNase-seq from T47D (ENCLB895IWZ)

description:
https://www.encodeproject.org/experiments/ENCSR685GGU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR685GGU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB895IWZ

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 504 hours

value: cell line

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS477ITY at ENCODE; https://www.encodeproject.org/ENCBS477ITY/


title: DNase-seq from amniotic stem cell (ENCLB084PMB)

description:
https://www.encodeproject.org/experiments/ENCSR174DZU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR174DZU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084PMB
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens male embryo (15 weeks) amniotic stem primary cell

value: amniotic stem cell

value: embryonic

value: 15 week

value: John Stamatoyannopoulos, UW

value: Maria Roubelakis

value: ENCBS315GCX at ENCODE; https://www.encodeproject.org/ENCBS315GCX/


title: DNase-seq from K562 (ENCLB059AMH)

description:
https://www.encodeproject.org/experiments/ENCSR680QDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR680QDV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB059AMH

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS971INV at ENCODE; https://www.encodeproject.org/ENCBS971INV/


title: DNase-seq from putamen (ENCLB654CAZ)

description:
https://www.encodeproject.org/experiments/ENCSR716RVT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR716RVT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB654CAZ

source_name: Homo sapiens male adult (82 years) putamen tissue

value: putamen

value: tissue

value: male

value: adult

value: 82 year

value: Thomas Montine

value: ENCBS389GNS at ENCODE; https://www.encodeproject.org/ENCBS389GNS/


title: DNase-seq from NCI-H1436 (ENCLB440HJF)

description:
https://www.encodeproject.org/experiments/ENCSR707CBD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR707CBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440HJF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H1436 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: 39 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS030PKM at ENCODE; https://www.encodeproject.org/ENCBS030PKM/


title: DNase-seq from T47D (ENCLB531YIK)

description:
https://www.encodeproject.org/experiments/ENCSR681OAY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR681OAY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB531YIK

source_name: Homo sapiens T47D cell line treated with 1 uM bisphenol a for 120 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS062KNK at ENCODE; https://www.encodeproject.org/ENCBS062KNK/


title: DNase-seq from MCF-7 (ENCLB455PMJ)

description:
https://www.encodeproject.org/experiments/ENCSR167RKK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR167RKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB455PMJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: ENCBS891LXN at ENCODE; https://www.encodeproject.org/ENCBS891LXN/


title: DNase-seq from MCF-7 (ENCLB586MYW)

description:
https://www.encodeproject.org/experiments/ENCSR167RKK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR167RKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB586MYW

value: adult

value: ENCBS758CGI at ENCODE; https://www.encodeproject.org/ENCBS758CGI/


title: DNase-seq from MCF-7 (ENCLB023NKQ)

description:
https://www.encodeproject.org/experiments/ENCSR167RKK/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR167RKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB023NKQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS290UUK at ENCODE; https://www.encodeproject.org/ENCBS290UUK/


title: DNase-seq from MCF-7 (ENCLB192JYK)

description:
https://www.encodeproject.org/experiments/ENCSR167RKK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR167RKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB192JYK

value: cell line

value: ENCBS659HQZ at ENCODE; https://www.encodeproject.org/ENCBS659HQZ/


title: DNase-seq from brain (ENCLB753AXM)

description:
https://www.encodeproject.org/experiments/ENCSR172LRR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR172LRR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753AXM
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: brain

value: tissue

value: 90 or above year

value: Thomas Montine

value: ENCBS045UVH at ENCODE; https://www.encodeproject.org/ENCBS045UVH/


title: DNase-seq from T47D (ENCLB222IEN)

description:
https://www.encodeproject.org/experiments/ENCSR167JCP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR167JCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB222IEN

value: female

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS743EPS at ENCODE; https://www.encodeproject.org/ENCBS743EPS/


title: DNase-seq from NCI-H2081 (ENCLB745MXE)

description:
https://www.encodeproject.org/experiments/ENCSR670QLZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR670QLZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB745MXE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2081 cell line treated with 0.1% DMSO for 48 hours

value: 59 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS177EME at ENCODE; https://www.encodeproject.org/ENCBS177EME/


title: DNase-seq from T47D (ENCLB898DFX)

description:
https://www.encodeproject.org/experiments/ENCSR167JCP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR167JCP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB898DFX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: adult

value: ENCBS602FYJ at ENCODE; https://www.encodeproject.org/ENCBS602FYJ/


title: DNase-seq from MCF-7 (ENCLB736SAX)

description:
https://www.encodeproject.org/experiments/ENCSR165ZEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR165ZEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB736SAX

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 504 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS894RPU at ENCODE; https://www.encodeproject.org/ENCBS894RPU/


title: DNase-seq from T47D (ENCLB054CIV)

description:
https://www.encodeproject.org/experiments/ENCSR167FNW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR167FNW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB054CIV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM diethylstilbestrol for 120 hours

value: female

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS042ENM at ENCODE; https://www.encodeproject.org/ENCBS042ENM/


title: DNase-seq from putamen (ENCLB854NNB)

description:
https://www.encodeproject.org/experiments/ENCSR652NYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652NYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB854NNB

source_name: Homo sapiens male adult (87 years) putamen tissue

value: putamen

value: tissue

value: male

value: 87 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS951BOQ at ENCODE; https://www.encodeproject.org/ENCBS951BOQ/


title: DNase-seq from putamen (ENCLB904SDB)

description:
https://www.encodeproject.org/experiments/ENCSR652NYA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR652NYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB904SDB


title: DNase-seq from MOLM-13 (ENCLB818TPW)

description:
https://www.encodeproject.org/experiments/ENCSR165WVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR165WVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB818TPW
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MOLM-13 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: 20 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS170UZR at ENCODE; https://www.encodeproject.org/ENCBS170UZR/


title: DNase-seq from K562 (ENCLB535FQD)

description:
https://www.encodeproject.org/experiments/ENCSR625KXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR625KXT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB535FQD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS622EFY at ENCODE; https://www.encodeproject.org/ENCBS622EFY/


title: DNase-seq from UT-7 (ENCLB385APS)

description:
https://www.encodeproject.org/experiments/ENCSR668NUT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR668NUT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB385APS

source_name: Homo sapiens UT-7 cell line

value: 64 year

value: ENCBS683DUF at ENCODE; https://www.encodeproject.org/ENCBS683DUF/


title: DNase-seq from T47D (ENCLB834LGE)

description:
https://www.encodeproject.org/experiments/ENCSR652KQY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652KQY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB834LGE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 uM methoxychlor for 120 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS407ZLH at ENCODE; https://www.encodeproject.org/ENCBS407ZLH/


title: DNase-seq from MCF-7 (ENCLB636BWC)

description:
https://www.encodeproject.org/experiments/ENCSR625NVM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR625NVM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB636BWC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 1 nM diethylstilbestrol for 120 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS297MKK at ENCODE; https://www.encodeproject.org/ENCBS297MKK/


title: DNase-seq from T47D (ENCLB521ZXN)

description:
https://www.encodeproject.org/experiments/ENCSR648YHN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR648YHN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB521ZXN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM diethylstilbestrol for 2 hours

value: adult

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS801SOF at ENCODE; https://www.encodeproject.org/ENCBS801SOF/


title: DNase-seq from CD14-positive monocyte (ENCLB597ROR)

description:
https://www.encodeproject.org/experiments/ENCSR629GFF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR629GFF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB597ROR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 21 year

value: Shelly Heimfeld

value: ENCBS926WGY at ENCODE; https://www.encodeproject.org/ENCBS926WGY/


title: DNase-seq from MCF-7 (ENCLB522PVV)

description:
https://www.encodeproject.org/experiments/ENCSR603YOQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR603YOQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB522PVV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 504 hours

value: female

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS504NXN at ENCODE; https://www.encodeproject.org/ENCBS504NXN/


title: DNase-seq from T47D (ENCLB897KMV)

description:
https://www.encodeproject.org/experiments/ENCSR603IXL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR603IXL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB897KMV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM genistein for 2 hours

value: cell line

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS387ZWK at ENCODE; https://www.encodeproject.org/ENCBS387ZWK/


title: DNase-seq from MCF-7 (ENCLB208XJE)

description:
https://www.encodeproject.org/experiments/ENCSR606UTF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR606UTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB208XJE

source_name: Homo sapiens MCF-7 cell line treated with 10 nM genistein for 2 hours

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: John Stamatoyannopoulos, UW

value: ENCBS750NHX at ENCODE; https://www.encodeproject.org/ENCBS750NHX/


title: DNase-seq from T47D (ENCLB823FZU)

description:
https://www.encodeproject.org/experiments/ENCSR155XOC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR155XOC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB823FZU

source_name: Homo sapiens T47D cell line treated with 1 nM diethylstilbestrol for 504 hours

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS444OXL at ENCODE; https://www.encodeproject.org/ENCBS444OXL/


title: DNase-seq from K562 (ENCLB696OPA)

description:
https://www.encodeproject.org/experiments/ENCSR152LUV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR152LUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB696OPA

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS505XWS at ENCODE; https://www.encodeproject.org/ENCBS505XWS/


title: DNase-seq from MCF-7 (ENCLB600LGW)

description:
https://www.encodeproject.org/experiments/ENCSR150QWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR150QWZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB600LGW

source_name: Homo sapiens MCF-7 cell line treated with 1 uM methoxychlor for 120 hours

value: female

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS818LVY at ENCODE; https://www.encodeproject.org/ENCBS818LVY/


title: DNase-seq from MCF-7 (ENCLB739XNR)

description:
https://www.encodeproject.org/experiments/ENCSR606UTF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR606UTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB739XNR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: ENCBS084XPZ at ENCODE; https://www.encodeproject.org/ENCBS084XPZ/


title: DNase-seq from T47D (ENCLB482DNR)

description:
https://www.encodeproject.org/experiments/ENCSR149SET/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR149SET
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB482DNR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM genistein for 2 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS009TBV at ENCODE; https://www.encodeproject.org/ENCBS009TBV/


title: DNase-seq from T47D (ENCLB080VLM)

description:
https://www.encodeproject.org/experiments/ENCSR133XWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR133XWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB080VLM
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM 17 beta estradiol for 504 hours

value: adult

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:16469; treatment_term_name:17 beta estradiol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS690BWR at ENCODE; https://www.encodeproject.org/ENCBS690BWR/


title: DNase-seq from T47D (ENCLB647JYN)

description:
https://www.encodeproject.org/experiments/ENCSR133NSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR133NSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB647JYN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 uM methoxychlor for 2 hours

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS820NLZ at ENCODE; https://www.encodeproject.org/ENCBS820NLZ/


title: DNase-seq from T47D (ENCLB698KWH)

description:
https://www.encodeproject.org/experiments/ENCSR133NSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR133NSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB698KWH

value: ENCBS193AGJ at ENCODE; https://www.encodeproject.org/ENCBS193AGJ/


title: DNase-seq from NCI-H2107 (ENCLB697INB)

description:
https://www.encodeproject.org/experiments/ENCSR134ODL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR134ODL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB697INB

source_name: Homo sapiens NCI-H2107 cell line treated with 0.1% DMSO for 48 hours

value: male

value: 36 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS106DZB at ENCODE; https://www.encodeproject.org/ENCBS106DZB/


title: DNase-seq from T47D (ENCLB068TNX)

description:
https://www.encodeproject.org/experiments/ENCSR123VCI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR123VCI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB068TNX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM genistein for 504 hours

value: cell line

value: female

value: ATCC

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS446VOF at ENCODE; https://www.encodeproject.org/ENCBS446VOF/


title: DNase-seq from MCF-7 (ENCLB743XZD)

description:
https://www.encodeproject.org/experiments/ENCSR150OSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR150OSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB743XZD

source_name: Homo sapiens MCF-7 cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS870JEW at ENCODE; https://www.encodeproject.org/ENCBS870JEW/


title: DNase-seq from K562 (ENCLB997DGH)

description:
https://www.encodeproject.org/experiments/ENCSR101LUA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR101LUA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB997DGH

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS990LAC at ENCODE; https://www.encodeproject.org/ENCBS990LAC/


title: DNase-seq from NCI-H748 (ENCLB538KOR)

description:
https://www.encodeproject.org/experiments/ENCSR119PWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR119PWZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB538KOR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H748 cell line

value: male

value: 62 year

value: ENCBS830HXD at ENCODE; https://www.encodeproject.org/ENCBS830HXD/


title: DNase-seq from MCF-7 (ENCLB030TYL)

description:
https://www.encodeproject.org/experiments/ENCSR098DVC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR098DVC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB030TYL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: DSMZ

value: ENCBS101QAX at ENCODE; https://www.encodeproject.org/ENCBS101QAX/


title: DNase-seq from inflammatory macrophage (ENCLB504APF)

description:
https://www.encodeproject.org/experiments/ENCSR105BTM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR105BTM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB504APF
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: 40 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS639JZG at ENCODE; https://www.encodeproject.org/ENCBS639JZG/


title: DNase-seq from CD14-positive monocyte (ENCLB028NIS)

description:
https://www.encodeproject.org/experiments/ENCSR083DZB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR083DZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB028NIS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: CD14-positive monocyte

value: 21 year

value: ENCBS360QGD at ENCODE; https://www.encodeproject.org/ENCBS360QGD/


title: DNase-seq from MCF-7 (ENCLB700DLQ)

description:
https://www.encodeproject.org/experiments/ENCSR084AQX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR084AQX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB700DLQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: ENCBS084LTC at ENCODE; https://www.encodeproject.org/ENCBS084LTC/


title: DNase-seq from CD14-positive monocyte (ENCLB084OXU)

description:
https://www.encodeproject.org/experiments/ENCSR083DZB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR083DZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB084OXU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS466DCT at ENCODE; https://www.encodeproject.org/ENCBS466DCT/


title: DNase-seq from MCF-7 (ENCLB888XRI)

description:
https://www.encodeproject.org/experiments/ENCSR079WDP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR079WDP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB888XRI

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 2 hours

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS698VPS at ENCODE; https://www.encodeproject.org/ENCBS698VPS/


title: DNase-seq from MCF-7 (ENCLB042TUX)

description:
https://www.encodeproject.org/experiments/ENCSR086GAN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR086GAN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB042TUX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 10 uM methoxychlor for 504 hours

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS672IFC at ENCODE; https://www.encodeproject.org/ENCBS672IFC/


title: DNase-seq from K562 (ENCLB399AQN)

description:
https://www.encodeproject.org/experiments/ENCSR082TYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR082TYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB399AQN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS708ZOP at ENCODE; https://www.encodeproject.org/ENCBS708ZOP/


title: DNase-seq from MCF-7 (ENCLB627UWV)

description:
https://www.encodeproject.org/experiments/ENCSR079WDP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR079WDP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB627UWV

value: cell line

value: ENCBS403TJX at ENCODE; https://www.encodeproject.org/ENCBS403TJX/