title: Flow-FISH CRISPR screen from K562 (ENCLB247DWV)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB247DWV
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS916FRM at ENCODE; https://www.encodeproject.org/ENCBS916FRM/


title: PRO-cap from breast (ENCLB185WCW)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR212GWU/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR212GWU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB185WCW

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens female adult (39 years) breast tissue

value: breast

value: tissue

tag: biosample encode accession

tag: encode accession

tag: Sex

tag: dev stage

value: adult

tag: age

value: 39 year

tag: lab

value: Haiyuan Yu, Cornell

tag: source

value: CHTN

tag: link

value: ENCBS227XPJ at ENCODE; https://www.encodeproject.org/ENCBS227XPJ/


title: DNase-seq from immature natural killer cell (ENCLB040HYJ)

description:
https://www.encodeproject.org/experiments/ENCSR128IYB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR128IYB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040HYJ

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens female adult (45 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 45 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS797XXO at ENCODE; https://www.encodeproject.org/ENCBS797XXO/


title: Flow-FISH CRISPR screen from K562 (ENCLB287KCH)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB287KCH
size range: 200-210

tag: line

value: cell line

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS994UNV at ENCODE; https://www.encodeproject.org/ENCBS994UNV/


title: Control CRISPR screen from WTC11 (ENCLB855QUG)

description:
https://www.encodeproject.org/experiments/ENCSR427OPP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR427OPP
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB855QUG

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: male

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: The Gladstone Stem Cell Core

value: ENCBS131LTN at ENCODE; https://www.encodeproject.org/ENCBS131LTN/


title: Control CRISPR screen from WTC11 (ENCLB226ABA)

description:
https://www.encodeproject.org/experiments/ENCSR427OPP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR427OPP
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB226ABA

value: adult

value: ENCBS720NSO at ENCODE; https://www.encodeproject.org/ENCBS720NSO/


title: Flow-FISH CRISPR screen from K562 (ENCLB604LAX)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB604LAX
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS916FRM at ENCODE; https://www.encodeproject.org/ENCBS916FRM/


title: PRO-cap from breast (ENCLB948YLK)

description:
https://www.encodeproject.org/experiments/ENCSR212GWU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR212GWU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB948YLK

value: breast

value: tissue

value: 39 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS227XPJ at ENCODE; https://www.encodeproject.org/ENCBS227XPJ/


title: DNase-seq from activated T-cell (ENCLB969EZS)

description:
https://www.encodeproject.org/experiments/ENCSR212ALN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR212ALN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB969EZS

source_name: Homo sapiens female adult (46 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: female

value: 46 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS453BNT at ENCODE; https://www.encodeproject.org/ENCBS453BNT/


title: Flow-FISH CRISPR screen from K562 (ENCLB173TQS)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB173TQS
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB433YRB)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB433YRB
size range: 200-210

value: ATCC

value: ENCBS994UNV at ENCODE; https://www.encodeproject.org/ENCBS994UNV/


title: Flow-FISH CRISPR screen from K562 (ENCLB197BBS)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB197BBS
size range: 200-210


title: DNase-seq from activated T-cell (ENCLB007HDG)

description:
https://www.encodeproject.org/experiments/ENCSR212ALN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR212ALN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007HDG

value: ENCBS173QNX at ENCODE; https://www.encodeproject.org/ENCBS173QNX/


title: Control CRISPR screen from WTC11 (ENCLB923TLK)

description:
https://www.encodeproject.org/experiments/ENCSR418JRB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR418JRB
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB923TLK

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS502PSC at ENCODE; https://www.encodeproject.org/ENCBS502PSC/


title: Control CRISPR screen from WTC11 (ENCLB946YBG)

description:
https://www.encodeproject.org/experiments/ENCSR418JRB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR418JRB
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB946YBG

value: ENCBS133XJZ at ENCODE; https://www.encodeproject.org/ENCBS133XJZ/


title: PRO-cap from adrenal gland (ENCLB463EUJ)

description:
https://www.encodeproject.org/experiments/ENCSR408RHY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR408RHY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB463EUJ

source_name: Homo sapiens female adult (59 years) adrenal gland tissue

value: adrenal gland

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS024DKR at ENCODE; https://www.encodeproject.org/ENCBS024DKR/


title: DNase-seq from activated B cell (ENCLB396NRP)

description:
https://www.encodeproject.org/experiments/ENCSR410APR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410APR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB396NRP

source_name: Homo sapiens female adult (23 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: adult

value: 23 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS243PHW at ENCODE; https://www.encodeproject.org/ENCBS243PHW/


title: PRO-cap from cerebellum (ENCLB581FPH)

description:
https://www.encodeproject.org/experiments/ENCSR407CCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.
experiment encode accession: ENCSR407CCJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB581FPH

source_name: Homo sapiens female adult (51 years) cerebellum tissue

value: cerebellum

value: 51 year

value: CHTN

value: ENCBS708XJP at ENCODE; https://www.encodeproject.org/ENCBS708XJP/


title: Flow-FISH CRISPR screen from K562 (ENCLB114AGZ)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB114AGZ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS411BOC at ENCODE; https://www.encodeproject.org/ENCBS411BOC/


title: PRO-cap from spleen (ENCLB430JJF)

description:
https://www.encodeproject.org/experiments/ENCSR417NJC/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR417NJC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB430JJF

source_name: Homo sapiens female adult (53 years) spleen tissue

value: spleen

value: tissue

value: adult

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS208YGD at ENCODE; https://www.encodeproject.org/ENCBS208YGD/


title: proliferation CRISPR screen from neural progenitor cell (ENCLB808EQR)

description:
https://www.encodeproject.org/experiments/ENCSR406XUG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR406XUG
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB808EQR

source_name: Homo sapiens male adult (30 years) neural progenitor in vitro differentiated cells genetically modified (CRISPRi) using CRISPR, genetically modified (insertion) using CRISPR, genetically modified (insertion) using TALEN inserting M. musculus Neuro...

value: neural progenitor cell

value: in vitro differentiated cells

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS763AEC at ENCODE; https://www.encodeproject.org/ENCBS763AEC/


title: proliferation CRISPR screen from neural progenitor cell (ENCLB556FDA)

description:
https://www.encodeproject.org/experiments/ENCSR406XUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR406XUG
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB556FDA

value: ENCBS903SDZ at ENCODE; https://www.encodeproject.org/ENCBS903SDZ/


title: PRO-cap from spleen (ENCLB011DAJ)

description:
https://www.encodeproject.org/experiments/ENCSR417NJC/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR417NJC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB011DAJ

value: female

value: 53 year


title: DNase-seq from HCT116 (ENCLB082FXK)

description:
https://www.encodeproject.org/experiments/ENCSR400KNW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR400KNW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB082FXK

source_name: Homo sapiens HCT116 cell line

value: cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS880YFZ at ENCODE; https://www.encodeproject.org/ENCBS880YFZ/


title: DNase-seq from activated B cell (ENCLB310YPQ)

description:
https://www.encodeproject.org/experiments/ENCSR410APR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR410APR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB310YPQ

value: activated B cell

value: primary cell

value: adult

value: 23 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS675FGB at ENCODE; https://www.encodeproject.org/ENCBS675FGB/


title: DNase-seq from HCT116 (ENCLB198XVI)

description:
https://www.encodeproject.org/experiments/ENCSR400KNW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR400KNW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB198XVI

value: male

value: ENCBS743XUA at ENCODE; https://www.encodeproject.org/ENCBS743XUA/


title: Flow-FISH CRISPR screen from K562 (ENCLB281WVW)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB281WVW
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS994UNV at ENCODE; https://www.encodeproject.org/ENCBS994UNV/


title: DNase-seq from endothelial cell of umbilical vein (ENCLB995NBK)

description:
https://www.encodeproject.org/experiments/ENCSR208VER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208VER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB995NBK

source_name: Homo sapiens male newborn endothelial of umbilical vein primary cell

value: endothelial cell of umbilical vein

value: newborn

value: unknown

value: John Stamatoyannopoulos, UW

value: Lonza

value: ENCBS981BVC at ENCODE; https://www.encodeproject.org/ENCBS981BVC/


title: DNase-seq from activated B cell (ENCLB444NJZ)

description:
https://www.encodeproject.org/experiments/ENCSR410APR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR410APR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB444NJZ

value: activated B cell

value: primary cell

value: adult

value: 23 year

value: ENCBS273QRX at ENCODE; https://www.encodeproject.org/ENCBS273QRX/


title: Flow-FISH CRISPR screen from K562 (ENCLB705JME)

description:
https://www.encodeproject.org/experiments/ENCSR126BVU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR126BVU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB705JME
size range: 200-210

value: cell line

value: 53 year

value: ENCBS916FRM at ENCODE; https://www.encodeproject.org/ENCBS916FRM/


title: PRO-cap from lung (ENCLB428LNR)

description:
https://www.encodeproject.org/experiments/ENCSR997YHR/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lung.
experiment encode accession: ENCSR997YHR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB428LNR

source_name: Homo sapiens female adult (53 years) lung tissue

value: lung

value: tissue

value: female

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS166WQB at ENCODE; https://www.encodeproject.org/ENCBS166WQB/


title: PRO-cap from right atrium auricular region (ENCLB711BFZ)

description:
https://www.encodeproject.org/experiments/ENCSR997INZ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium auricular region of heart.
experiment encode accession: ENCSR997INZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB711BFZ

source_name: Homo sapiens female adult (53 years) right atrium auricular region tissue

value: right atrium auricular region

value: GTEx

value: ENCBS137VXA at ENCODE; https://www.encodeproject.org/ENCBS137VXA/


title: PRO-cap from lung (ENCLB466ZUX)

description:
https://www.encodeproject.org/experiments/ENCSR997YHR/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lung.
experiment encode accession: ENCSR997YHR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB466ZUX


title: PRO-cap from right atrium auricular region (ENCLB669YAR)

description:
https://www.encodeproject.org/experiments/ENCSR997INZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium auricular region of heart.
experiment encode accession: ENCSR997INZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB669YAR


title: PRO-cap from adrenal gland (ENCLB088SSL)

description:
https://www.encodeproject.org/experiments/ENCSR408RHY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR408RHY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB088SSL

value: adrenal gland

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: ENCBS024DKR at ENCODE; https://www.encodeproject.org/ENCBS024DKR/


title: Flow-FISH CRISPR screen from K562 (ENCLB919NUW)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB919NUW
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS411BOC at ENCODE; https://www.encodeproject.org/ENCBS411BOC/


title: PRO-cap from cerebellum (ENCLB448SLH)

description:
https://www.encodeproject.org/experiments/ENCSR407CCJ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.
experiment encode accession: ENCSR407CCJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB448SLH

value: cerebellum

value: tissue

value: 51 year

value: CHTN

value: ENCBS708XJP at ENCODE; https://www.encodeproject.org/ENCBS708XJP/


title: Flow-FISH CRISPR screen from K562 (ENCLB477LUG)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB477LUG
size range: 200-210

value: cell line

value: female

value: 53 year

value: ENCBS173ZEL at ENCODE; https://www.encodeproject.org/ENCBS173ZEL/


title: proliferation CRISPR screen from K562 (ENCLB201YPO)

description:
https://www.encodeproject.org/experiments/ENCSR995JLE/
***************
biological replicate number: 4
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR995JLE
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR501FEU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB201YPO

value: Tim Reddy, Duke

value: ENCBS233JYI at ENCODE; https://www.encodeproject.org/ENCBS233JYI/


title: PRO-cap from mucosa of descending colon (ENCLB065SRD)

description:
https://www.encodeproject.org/experiments/ENCSR995FAO/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mucosa of descending colon.
experiment encode accession: ENCSR995FAO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB065SRD

source_name: Homo sapiens female adult (61 years) mucosa of descending colon tissue

value: mucosa of descending colon

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS810KQZ at ENCODE; https://www.encodeproject.org/ENCBS810KQZ/


title: PRO-cap from mucosa of descending colon (ENCLB795DDM)

description:
https://www.encodeproject.org/experiments/ENCSR995FAO/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mucosa of descending colon.
experiment encode accession: ENCSR995FAO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB795DDM

value: adult


title: proliferation CRISPR screen from K562 (ENCLB766OIW)

description:
https://www.encodeproject.org/experiments/ENCSR995JLE/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR995JLE
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR501FEU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB766OIW

value: chronic myelogenous leukemia (CML)

value: ATCC

value: ENCBS279OTJ at ENCODE; https://www.encodeproject.org/ENCBS279OTJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB679KOZ)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB679KOZ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS411BOC at ENCODE; https://www.encodeproject.org/ENCBS411BOC/


title: Flow-FISH CRISPR screen from K562 (ENCLB201DZC)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB201DZC
size range: 200-210

value: cell line

value: female


title: DNase-seq from HCT116 (ENCLB283EUE)

description:
https://www.encodeproject.org/experiments/ENCSR400KNW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR400KNW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB283EUE

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS155QHA at ENCODE; https://www.encodeproject.org/ENCBS155QHA/


title: Flow-FISH CRISPR screen from K562 (ENCLB135PYA)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB135PYA
size range: 200-210

value: 53 year

value: ENCBS173ZEL at ENCODE; https://www.encodeproject.org/ENCBS173ZEL/


title: proliferation CRISPR screen from K562 (ENCLB626IYB)

description:
https://www.encodeproject.org/experiments/ENCSR995JLE/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR995JLE
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR501FEU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB626IYB

value: Tim Reddy, Duke

value: ENCBS456WML at ENCODE; https://www.encodeproject.org/ENCBS456WML/


title: Flow-FISH CRISPR screen from K562 (ENCLB564MOC)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB564MOC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS511WZO at ENCODE; https://www.encodeproject.org/ENCBS511WZO/


title: DNase-seq from HCT116 (ENCLB448VBM)

description:
https://www.encodeproject.org/experiments/ENCSR986ZSH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR986ZSH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB448VBM

value: ENCBS924KEF at ENCODE; https://www.encodeproject.org/ENCBS924KEF/


title: Flow-FISH CRISPR screen from K562 (ENCLB556QCY)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB556QCY
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB325TML)

description:
https://www.encodeproject.org/experiments/ENCSR123OKE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR123OKE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB325TML
size range: 200-210

value: cell line

value: female

value: ENCBS411BOC at ENCODE; https://www.encodeproject.org/ENCBS411BOC/


title: Flow-FISH CRISPR screen from K562 (ENCLB770RRD)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB770RRD
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB363NNT)

description:
https://www.encodeproject.org/experiments/ENCSR995JLE/
***************
biological replicate number: 3
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR995JLE
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR501FEU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB363NNT

value: ENCBS411BWE at ENCODE; https://www.encodeproject.org/ENCBS411BWE/


title: PRO-cap from right lobe of liver (ENCLB870GOT)

description:
https://www.encodeproject.org/experiments/ENCSR992HBP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR992HBP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB870GOT

source_name: Homo sapiens female adult (53 years) right lobe of liver tissue

value: right lobe of liver

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS643CIV at ENCODE; https://www.encodeproject.org/ENCBS643CIV/


title: PRO-cap from right lobe of liver (ENCLB367NMG)

description:
https://www.encodeproject.org/experiments/ENCSR992HBP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR992HBP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB367NMG

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB729BEM)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB729BEM
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB080YGZ)

description:
https://www.encodeproject.org/experiments/ENCSR980TGS/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR980TGS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB080YGZ

source_name: Homo sapiens female adult (51 years) Metastatic Breast Carcinoma in the Brain tissue

value: 51 year

value: CHTN

value: ENCBS876SNI at ENCODE; https://www.encodeproject.org/ENCBS876SNI/


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB946MYV)

description:
https://www.encodeproject.org/experiments/ENCSR986NEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR986NEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB946MYV

source_name: Homo sapiens embryo (59 days) liver tissue

value: CD4-positive, alpha-beta memory T cell

value: primary cell

tag: description

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: not collected

value: multiple sclerosis

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS000UPK at ENCODE; https://www.encodeproject.org/ENCBS000UPK/

value: Derived from ENCODE donor ENCDO187BUH; https://www.encodeproject.org/ENCDO187BUH/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB089LDJ)

description:
https://www.encodeproject.org/experiments/ENCSR980TGS/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR980TGS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB089LDJ

value: tissue

value: female

value: adult

value: Haiyuan Yu, Cornell


title: PRO-cap from ReNcell CX (ENCLB133PVA)

description:
https://www.encodeproject.org/experiments/ENCSR973QQI/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neural progenitor cell line.
experiment encode accession: ENCSR973QQI
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB133PVA

source_name: Homo sapiens ReNcell CX cell line

value: ReNcell CX

value: cell line

value: male

value: unknown

value: ATCC

value: ENCBS095TOT at ENCODE; https://www.encodeproject.org/ENCBS095TOT/


title: Flow-FISH CRISPR screen from K562 (ENCLB602CYD)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB602CYD
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS511WZO at ENCODE; https://www.encodeproject.org/ENCBS511WZO/


title: Flow-FISH CRISPR screen from K562 (ENCLB753VPT)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB753VPT
size range: 200-210

value: ENCBS485YKI at ENCODE; https://www.encodeproject.org/ENCBS485YKI/


title: PRO-cap from REH cell (ENCLB775UTO)

description:
https://www.encodeproject.org/experiments/ENCSR983JFU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in REH.
experiment encode accession: ENCSR983JFU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB775UTO

source_name: Homo sapiens REH cell line

value: REH cell

value: child

value: 15 year

value: Russell Ryan

value: ENCBS119HVJ at ENCODE; https://www.encodeproject.org/ENCBS119HVJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB773QYC)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB773QYC
size range: 200-210

value: female

value: adult


title: PRO-cap from adrenal gland (ENCLB890EQC)

description:
https://www.encodeproject.org/experiments/ENCSR970ACM/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR970ACM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB890EQC

source_name: Homo sapiens female adult (53 years) adrenal gland tissue

value: adrenal gland

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS741ICD at ENCODE; https://www.encodeproject.org/ENCBS741ICD/


title: PRO-cap from lower lobe of left lung (ENCLB491WGF)

description:
https://www.encodeproject.org/experiments/ENCSR967RHN/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower lobe of left lung.
experiment encode accession: ENCSR967RHN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB491WGF

source_name: Homo sapiens female adult (59 years) lower lobe of left lung tissue

value: lower lobe of left lung

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder

value: ENCBS255XMF at ENCODE; https://www.encodeproject.org/ENCBS255XMF/


title: Flow-FISH CRISPR screen from K562 (ENCLB120QYT)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB120QYT
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS485YKI at ENCODE; https://www.encodeproject.org/ENCBS485YKI/


title: PRO-cap from adrenal gland (ENCLB607WMV)

description:
https://www.encodeproject.org/experiments/ENCSR970ACM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR970ACM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB607WMV

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB942MDE)

description:
https://www.encodeproject.org/experiments/ENCSR120GMA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR120GMA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB942MDE
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB196EJX)

description:
https://www.encodeproject.org/experiments/ENCSR118HJI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR118HJI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB196EJX

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS581NVJ at ENCODE; https://www.encodeproject.org/ENCBS581NVJ/


title: PRO-cap from ReNcell CX (ENCLB393KGO)

description:
https://www.encodeproject.org/experiments/ENCSR973QQI/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neural progenitor cell line.
experiment encode accession: ENCSR973QQI
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB393KGO

value: ReNcell CX

value: unknown

value: Haiyuan Yu, Cornell

value: ENCBS549ZMD at ENCODE; https://www.encodeproject.org/ENCBS549ZMD/


title: PRO-cap from HCT116 (ENCLB451NQQ)

description:
https://www.encodeproject.org/experiments/ENCSR966RLG/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SMARCA5_T.
experiment encode accession: ENCSR966RLG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB451NQQ

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: cell line

value: 48 year

value: Erez Aiden, Baylor

value: Dr. Masato Kanemaki

value: colorectal carcinoma

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS288BQH at ENCODE; https://www.encodeproject.org/ENCBS288BQH/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: PRO-cap from HCT116 (ENCLB798ZCD)

description:
https://www.encodeproject.org/experiments/ENCSR966RLG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SMARCA5_T.
experiment encode accession: ENCSR966RLG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB798ZCD

value: male

value: adult

value: ENCBS540RKF at ENCODE; https://www.encodeproject.org/ENCBS540RKF/


title: PRO-cap from lower lobe of left lung (ENCLB311RFT)

description:
https://www.encodeproject.org/experiments/ENCSR967RHN/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower lobe of left lung.
experiment encode accession: ENCSR967RHN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB311RFT

value: lower lobe of left lung

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder

value: ENCBS255XMF at ENCODE; https://www.encodeproject.org/ENCBS255XMF/


title: DNase-seq from HCT116 (ENCLB481ZXH)

description:
https://www.encodeproject.org/experiments/ENCSR986ZSH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR986ZSH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB481ZXH

value: cell line

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS350ZGR at ENCODE; https://www.encodeproject.org/ENCBS350ZGR/


title: PRO-cap from sternocleidomastoid (ENCLB816JEY)

description:
https://www.encodeproject.org/experiments/ENCSR964OON/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sternocleidomastoid muscle.
experiment encode accession: ENCSR964OON
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB816JEY

source_name: Homo sapiens sternocleidomastoid tissue

value: sternocleidomastoid

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS539XDF at ENCODE; https://www.encodeproject.org/ENCBS539XDF/


title: Flow-FISH CRISPR screen from K562 (ENCLB893YZI)

description:
https://www.encodeproject.org/experiments/ENCSR118EQS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR118EQS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB893YZI
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS826PJX at ENCODE; https://www.encodeproject.org/ENCBS826PJX/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB100LJN)

description:
https://www.encodeproject.org/experiments/ENCSR118HJI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR118HJI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB100LJN

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS905JUT at ENCODE; https://www.encodeproject.org/ENCBS905JUT/


title: Flow-FISH CRISPR screen from K562 (ENCLB826MDH)

description:
https://www.encodeproject.org/experiments/ENCSR118EQS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR118EQS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB826MDH
size range: 200-210

value: cell line

value: female


title: PRO-cap from heart left ventricle (ENCLB270ALA)

description:
https://www.encodeproject.org/experiments/ENCSR961UBB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR961UBB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB270ALA

source_name: Homo sapiens female adult (59 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS551JNW at ENCODE; https://www.encodeproject.org/ENCBS551JNW/


title: PRO-cap from right ventricle myocardium (ENCLB930MQB)

description:
https://www.encodeproject.org/experiments/ENCSR959JOB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle myocardium inferior of heart.
experiment encode accession: ENCSR959JOB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB930MQB

source_name: Homo sapiens male adult (37 years) right ventricle myocardium tissue

value: right ventricle myocardium

value: adult

value: 37 year

value: ENCBS706QFF at ENCODE; https://www.encodeproject.org/ENCBS706QFF/


title: PRO-cap from right ventricle myocardium (ENCLB659LSH)

description:
https://www.encodeproject.org/experiments/ENCSR959JOB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle myocardium inferior of heart.
experiment encode accession: ENCSR959JOB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB659LSH

value: male


title: Flow-FISH CRISPR screen from K562 (ENCLB441WTP)

description:
https://www.encodeproject.org/experiments/ENCSR118EQS/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR118EQS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB441WTP
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS826PJX at ENCODE; https://www.encodeproject.org/ENCBS826PJX/


title: PRO-cap from heart left ventricle (ENCLB649AVL)

description:
https://www.encodeproject.org/experiments/ENCSR961UBB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR961UBB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB649AVL

value: heart left ventricle

value: female


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB865CPG)

description:
https://www.encodeproject.org/experiments/ENCSR956ISH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR956ISH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB865CPG

source_name: Homo sapiens stimulated activated naive CD4-positive, alpha-beta T primary cell

value: primary cell

value: not collected

value: healthy

value: unknown

value: John Stamatoyannopoulos, UW

value: David Hafler

value: ENCBS428INZ at ENCODE; https://www.encodeproject.org/ENCBS428INZ/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB227JAI)

description:
https://www.encodeproject.org/experiments/ENCSR956ISH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR956ISH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB227JAI

value: ENCBS571CCZ at ENCODE; https://www.encodeproject.org/ENCBS571CCZ/


title: PRO-cap from suprapubic skin (ENCLB065LYS)

description:
https://www.encodeproject.org/experiments/ENCSR956DBV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Suprapubic skin.
experiment encode accession: ENCSR956DBV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB065LYS

source_name: Homo sapiens female adult (53 years) suprapubic skin tissue

value: suprapubic skin

value: tissue

value: adult

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS569RWY at ENCODE; https://www.encodeproject.org/ENCBS569RWY/


title: Flow-FISH CRISPR screen from K562 (ENCLB106GSU)

description:
https://www.encodeproject.org/experiments/ENCSR118EQS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR118EQS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB106GSU
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS826PJX at ENCODE; https://www.encodeproject.org/ENCBS826PJX/


title: DNase-seq from CD14-positive monocyte (ENCLB690GMM)

description:
https://www.encodeproject.org/experiments/ENCSR956AOH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR956AOH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB690GMM

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS291UQR at ENCODE; https://www.encodeproject.org/ENCBS291UQR/


title: DNase-seq from CD14-positive monocyte (ENCLB813RTC)

description:
https://www.encodeproject.org/experiments/ENCSR956AOH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR956AOH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB813RTC

source_name: Homo sapiens male adult (51 years) CD14-positive monocyte primary cell

value: 51 year

value: Charles Lee

value: AllCells

value: ENCBS514ILV at ENCODE; https://www.encodeproject.org/ENCBS514ILV/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB873SYX)

description:
https://www.encodeproject.org/experiments/ENCSR952RDF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR952RDF
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR364KFC
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB873SYX

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using C...

value: glutamatergic neuron

value: in vitro differentiated cells

value: adult

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS200IJS at ENCODE; https://www.encodeproject.org/ENCBS200IJS/


title: DNase-seq from CD14-positive monocyte (ENCLB899KAX)

description:
https://www.encodeproject.org/experiments/ENCSR956AOH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR956AOH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB899KAX

value: CD14-positive monocyte


title: Flow-FISH CRISPR screen from K562 (ENCLB648IAW)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB648IAW
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS172DGN at ENCODE; https://www.encodeproject.org/ENCBS172DGN/


title: PRO-cap from sternocleidomastoid (ENCLB619BYQ)

description:
https://www.encodeproject.org/experiments/ENCSR964OON/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sternocleidomastoid muscle.
experiment encode accession: ENCSR964OON
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB619BYQ

value: sternocleidomastoid

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS539XDF at ENCODE; https://www.encodeproject.org/ENCBS539XDF/


title: Flow-FISH CRISPR screen from K562 (ENCLB614IAN)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB614IAN
size range: 200-210

value: adult

value: ENCBS573BLI at ENCODE; https://www.encodeproject.org/ENCBS573BLI/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB415FCS)

description:
https://www.encodeproject.org/experiments/ENCSR952RDF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR952RDF
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR364KFC
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB415FCS

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS408RJL at ENCODE; https://www.encodeproject.org/ENCBS408RJL/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB742LON)

description:
https://www.encodeproject.org/experiments/ENCSR117HIN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR117HIN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB742LON

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour

value: primary cell

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS873IZH at ENCODE; https://www.encodeproject.org/ENCBS873IZH/


title: PRO-cap from SEM (ENCLB641JTM)

description:
https://www.encodeproject.org/experiments/ENCSR944DTY/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SEM.
experiment encode accession: ENCSR944DTY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB641JTM

source_name: Homo sapiens SEM cell line

value: SEM

value: cell line

value: child

value: 5 year

value: Haiyuan Yu, Cornell

value: Russell Ryan

value: ENCBS198VEB at ENCODE; https://www.encodeproject.org/ENCBS198VEB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB916YBM)

description:
https://www.encodeproject.org/experiments/ENCSR117HIN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR117HIN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB916YBM

value: adult

value: ENCBS515CGC at ENCODE; https://www.encodeproject.org/ENCBS515CGC/


title: PRO-cap from suprapubic skin (ENCLB079UZW)

description:
https://www.encodeproject.org/experiments/ENCSR956DBV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Suprapubic skin.
experiment encode accession: ENCSR956DBV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB079UZW

value: suprapubic skin

value: tissue

value: 53 year

value: GTEx

value: ENCBS569RWY at ENCODE; https://www.encodeproject.org/ENCBS569RWY/


title: Flow-FISH CRISPR screen from K562 (ENCLB962BTV)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB962BTV
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS585PXQ at ENCODE; https://www.encodeproject.org/ENCBS585PXQ/


title: DNase-seq from activated B cell (ENCLB695IFA)

description:
https://www.encodeproject.org/experiments/ENCSR947XQR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR947XQR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB695IFA

source_name: Homo sapiens male adult (19 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: male

value: 19 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS937DAO at ENCODE; https://www.encodeproject.org/ENCBS937DAO/


title: DNase-seq from OCI-LY7 (ENCLB494CHJ)

description:
https://www.encodeproject.org/experiments/ENCSR941CNT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR941CNT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB494CHJ

source_name: Homo sapiens OCI-LY7 cell line

value: cell line

value: B cell lymphoma

value: adult

value: 48 year

value: DSMZ

value: ENCBS579KGZ at ENCODE; https://www.encodeproject.org/ENCBS579KGZ/


title: PRO-cap from SEM (ENCLB252HEL)

description:
https://www.encodeproject.org/experiments/ENCSR944DTY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SEM.
experiment encode accession: ENCSR944DTY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB252HEL

value: SEM

value: female

value: child

value: 5 year

value: Haiyuan Yu, Cornell

value: Russell Ryan

value: ENCBS645MJS at ENCODE; https://www.encodeproject.org/ENCBS645MJS/


title: Flow-FISH CRISPR screen from K562 (ENCLB871EUY)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB871EUY
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS585PXQ at ENCODE; https://www.encodeproject.org/ENCBS585PXQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB447BCE)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB447BCE
size range: 200-210

value: cell line

value: ENCBS172DGN at ENCODE; https://www.encodeproject.org/ENCBS172DGN/


title: DNase-seq from OCI-LY7 (ENCLB573STN)

description:
https://www.encodeproject.org/experiments/ENCSR941CNT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR941CNT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB573STN

value: male

value: B cell lymphoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: ENCBS016QSY at ENCODE; https://www.encodeproject.org/ENCBS016QSY/


title: DNase-seq from activated B cell (ENCLB168NLG)

description:
https://www.encodeproject.org/experiments/ENCSR947XQR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR947XQR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB168NLG

value: activated B cell

value: primary cell

value: 19 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS874PVW at ENCODE; https://www.encodeproject.org/ENCBS874PVW/


title: DNase-seq from activated B cell (ENCLB643TZZ)

description:
https://www.encodeproject.org/experiments/ENCSR947XQR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR947XQR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB643TZZ

value: ENCBS304AJL at ENCODE; https://www.encodeproject.org/ENCBS304AJL/


title: PRO-cap from ovary (ENCLB119UDU)

description:
https://www.encodeproject.org/experiments/ENCSR940QKZ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR940QKZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB119UDU

source_name: Homo sapiens female adult (41 years) ovary tissue

value: ovary

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS643QHT at ENCODE; https://www.encodeproject.org/ENCBS643QHT/


title: PRO-cap from gastroesophageal sphincter (ENCLB342KSW)

description:
https://www.encodeproject.org/experiments/ENCSR946MDO/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gastroesophageal sphincter.
experiment encode accession: ENCSR946MDO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB342KSW

source_name: Homo sapiens male adult (37 years) gastroesophageal sphincter tissue

value: gastroesophageal sphincter

value: male

value: adult

value: 37 year

value: GTEx

value: ENCBS550QOQ at ENCODE; https://www.encodeproject.org/ENCBS550QOQ/


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCLB976FHC)

description:
https://www.encodeproject.org/experiments/ENCSR934ZMQ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.
experiment encode accession: ENCSR934ZMQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB976FHC

source_name: Homo sapiens female adult (43 years) Metastatic Breast Carcinoma in the Ovary tissue

value: 43 year

value: CHTN

value: ENCBS297RQY at ENCODE; https://www.encodeproject.org/ENCBS297RQY/


title: Flow-FISH CRISPR screen from K562 (ENCLB969OTY)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB969OTY
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS573BLI at ENCODE; https://www.encodeproject.org/ENCBS573BLI/


title: Flow-FISH CRISPR screen from K562 (ENCLB448DOP)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB448DOP
size range: 200-210

value: female

value: ENCBS172DGN at ENCODE; https://www.encodeproject.org/ENCBS172DGN/


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCLB265ZNB)

description:
https://www.encodeproject.org/experiments/ENCSR934ZMQ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.
experiment encode accession: ENCSR934ZMQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB265ZNB

value: tissue

value: Haiyuan Yu, Cornell


title: PRO-cap from gastroesophageal sphincter (ENCLB785QPZ)

description:
https://www.encodeproject.org/experiments/ENCSR946MDO/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gastroesophageal sphincter.
experiment encode accession: ENCSR946MDO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB785QPZ

value: gastroesophageal sphincter

value: male

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB090GCW)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB090GCW
size range: 200-210


title: DNase-seq from HCT116 (ENCLB056TVT)

description:
https://www.encodeproject.org/experiments/ENCSR933DDO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR933DDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB056TVT

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS869KTN at ENCODE; https://www.encodeproject.org/ENCBS869KTN/


title: PRO-cap from lower leg skin (ENCLB892UYG)

description:
https://www.encodeproject.org/experiments/ENCSR928ZWP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower leg skin.
experiment encode accession: ENCSR928ZWP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB892UYG

source_name: Homo sapiens female adult (53 years) lower leg skin tissue

value: lower leg skin

value: GTEx

value: ENCBS873KFD at ENCODE; https://www.encodeproject.org/ENCBS873KFD/


title: Flow-FISH CRISPR screen from K562 (ENCLB851AYM)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB851AYM
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS585PXQ at ENCODE; https://www.encodeproject.org/ENCBS585PXQ/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB593STT)

description:
https://www.encodeproject.org/experiments/ENCSR932FDJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR932FDJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB593STT

source_name: Homo sapiens CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS009DWE at ENCODE; https://www.encodeproject.org/ENCBS009DWE/


title: DNase-seq from HCT116 (ENCLB824ZHW)

description:
https://www.encodeproject.org/experiments/ENCSR933DDO/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR933DDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB824ZHW

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS770HRK at ENCODE; https://www.encodeproject.org/ENCBS770HRK/


title: PRO-cap from ovary (ENCLB506SDP)

description:
https://www.encodeproject.org/experiments/ENCSR940QKZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR940QKZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB506SDP

value: ovary

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS643QHT at ENCODE; https://www.encodeproject.org/ENCBS643QHT/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB522OAI)

description:
https://www.encodeproject.org/experiments/ENCSR932FDJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR932FDJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB522OAI

value: CD8-positive, alpha-beta memory T cell

value: primary cell

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS159WYU at ENCODE; https://www.encodeproject.org/ENCBS159WYU/


title: Flow-FISH CRISPR screen from K562 (ENCLB967PBW)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB967PBW
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS172DGN at ENCODE; https://www.encodeproject.org/ENCBS172DGN/


title: Control CRISPR screen from WTC11 (ENCLB196LAZ)

description:
https://www.encodeproject.org/experiments/ENCSR924HYA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR924HYA
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB196LAZ

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens FMR1, genetically modified (insertion) using transduction

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS871IEX at ENCODE; https://www.encodeproject.org/ENCBS871IEX/


title: DNase-seq from HCT116 (ENCLB164VHS)

description:
https://www.encodeproject.org/experiments/ENCSR933DDO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR933DDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB164VHS

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS592HPV at ENCODE; https://www.encodeproject.org/ENCBS592HPV/


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB240PJG)

description:
https://www.encodeproject.org/experiments/ENCSR116MMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR116MMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB240PJG

source_name: Homo sapiens male adult (38 years) CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 38 year

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS526FVE at ENCODE; https://www.encodeproject.org/ENCBS526FVE/


title: PRO-cap from omental fat pad (ENCLB963VLW)

description:
https://www.encodeproject.org/experiments/ENCSR926PFT/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Omental fat pad.
experiment encode accession: ENCSR926PFT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB963VLW

source_name: Homo sapiens female adult (53 years) omental fat pad tissue

value: omental fat pad

value: tissue

value: female

value: adult

value: 53 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS435DGN at ENCODE; https://www.encodeproject.org/ENCBS435DGN/


title: PRO-cap from cerebral cortex (ENCLB759QHV)

description:
https://www.encodeproject.org/experiments/ENCSR915VCN/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Temporal lobe of cerebral cortex.
experiment encode accession: ENCSR915VCN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB759QHV

source_name: Homo sapiens female adult (49 years) cerebral cortex tissue

value: cerebral cortex

value: 49 year

value: CHTN

value: ENCBS697DVZ at ENCODE; https://www.encodeproject.org/ENCBS697DVZ/


title: PRO-cap from cerebral cortex (ENCLB586SKL)

description:
https://www.encodeproject.org/experiments/ENCSR915VCN/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Temporal lobe of cerebral cortex.
experiment encode accession: ENCSR915VCN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB586SKL


title: Flow-FISH CRISPR screen from K562 (ENCLB754MQR)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB754MQR
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS585PXQ at ENCODE; https://www.encodeproject.org/ENCBS585PXQ/


title: Control CRISPR screen from WTC11 (ENCLB793QRS)

description:
https://www.encodeproject.org/experiments/ENCSR924HYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR924HYA
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB793QRS

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS290AWQ at ENCODE; https://www.encodeproject.org/ENCBS290AWQ/


title: DNase-seq from GM12878 (ENCLB755SKK)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 25
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB755SKK

source_name: Homo sapiens GM12878 cell line

value: female

value: unknown

value: adult

value: John Stamatoyannopoulos, UW

value: Coriell

value: ENCBS161VBV at ENCODE; https://www.encodeproject.org/ENCBS161VBV/


title: Flow-FISH CRISPR screen from BJAB (ENCLB632ZPP)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB632ZPP
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: BJAB

value: child

value: 5 year

value: ENCBS891TJI at ENCODE; https://www.encodeproject.org/ENCBS891TJI/


title: Flow-FISH CRISPR screen from K562 (ENCLB834NFB)

description:
https://www.encodeproject.org/experiments/ENCSR116VOY/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR116VOY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB834NFB
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS573BLI at ENCODE; https://www.encodeproject.org/ENCBS573BLI/


title: DNase-seq from GM12878 (ENCLB798GRI)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 28
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB798GRI

value: ENCBS782HAL at ENCODE; https://www.encodeproject.org/ENCBS782HAL/


title: Flow-FISH CRISPR screen from BJAB (ENCLB458YSI)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB458YSI
size range: 200-210

value: female

value: ENCBS283WNX at ENCODE; https://www.encodeproject.org/ENCBS283WNX/


title: DNase-seq from GM12878 (ENCLB003GZO)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 26
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB003GZO

value: unknown

value: adult

value: ENCBS436GCG at ENCODE; https://www.encodeproject.org/ENCBS436GCG/


title: DNase-seq from HUDEP-2 (ENCLB455IQM)

description:
https://www.encodeproject.org/experiments/ENCSR116FOP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR116FOP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB455IQM

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS028ICO at ENCODE; https://www.encodeproject.org/ENCBS028ICO/


title: PRO-cap from lower leg skin (ENCLB575OEP)

description:
https://www.encodeproject.org/experiments/ENCSR928ZWP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Lower leg skin.
experiment encode accession: ENCSR928ZWP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB575OEP

value: lower leg skin

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS873KFD at ENCODE; https://www.encodeproject.org/ENCBS873KFD/


title: DNase-seq from GM12878 (ENCLB976BOD)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 30
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB976BOD

value: cell line

value: Coriell

value: ENCBS080WBM at ENCODE; https://www.encodeproject.org/ENCBS080WBM/


title: Flow-FISH CRISPR screen from BJAB (ENCLB857UXH)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB857UXH
size range: 200-210

value: BJAB

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from GM12878 (ENCLB273WPT)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 31
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB273WPT

value: unknown

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS953TBZ at ENCODE; https://www.encodeproject.org/ENCBS953TBZ/


title: DNase-seq from GM12878 (ENCLB041WCR)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 32
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB041WCR

value: ENCBS458HYQ at ENCODE; https://www.encodeproject.org/ENCBS458HYQ/


title: DNase-seq from GM12878 (ENCLB597AAT)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 33
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB597AAT

value: ENCBS174HKS at ENCODE; https://www.encodeproject.org/ENCBS174HKS/


title: Flow-FISH CRISPR screen from BJAB (ENCLB739UXD)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB739UXD
size range: 200-210

value: ENCBS283WNX at ENCODE; https://www.encodeproject.org/ENCBS283WNX/


title: DNase-seq from GM12878 (ENCLB194AAX)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 24
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB194AAX

value: ENCBS839EKE at ENCODE; https://www.encodeproject.org/ENCBS839EKE/


title: DNase-seq from GM12878 (ENCLB396HQH)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 29
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB396HQH

value: cell line

value: ENCBS967GHD at ENCODE; https://www.encodeproject.org/ENCBS967GHD/


title: DNase-seq from GM12878 (ENCLB664VWP)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 23
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB664VWP

value: Coriell

value: ENCBS455EXG at ENCODE; https://www.encodeproject.org/ENCBS455EXG/


title: Flow-FISH CRISPR screen from BJAB (ENCLB252AOS)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
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biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB252AOS
size range: 200-210

value: BJAB

value: female

value: ENCBS891TJI at ENCODE; https://www.encodeproject.org/ENCBS891TJI/


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB022LCV)

description:
https://www.encodeproject.org/experiments/ENCSR909JZY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR909JZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB022LCV

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: not collected

value: healthy

value: David Hafler

value: ENCBS765QIH at ENCODE; https://www.encodeproject.org/ENCBS765QIH/


title: proliferation CRISPR screen from WTC11 (ENCLB742CVN)

description:
https://www.encodeproject.org/experiments/ENCSR900AXT/
***************
biological replicate number: 2
technical replicate number: 1
description: Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.
experiment encode accession: ENCSR900AXT
assay title: proliferation CRISPR screen
assembly: GRCh38
possible controls: ENCSR427OPP
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB742CVN

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 80 ng/mL tioguanine for 7 days

value: male

value: adult

value: 30 year

value: Yin Shen, UCSF

value: The Gladstone Stem Cell Core

value: treatment_term_id:CHEBI:9555; treatment_term_name:tioguanine; treatment_type:chemical; duration:7; duration_units:day;

value: ENCBS791RZE at ENCODE; https://www.encodeproject.org/ENCBS791RZE/