title: PRO-cap from heart left ventricle (ENCLB733POY)

description:
https://www.encodeproject.org/experiments/ENCSR656ZDH/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR656ZDH
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB733POY

source_name: Homo sapiens female adult (53 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS413JEX at ENCODE; https://www.encodeproject.org/ENCBS413JEX/


title: Flow-FISH CRISPR screen from K562 (ENCLB914OXP)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB914OXP
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS455ALQ at ENCODE; https://www.encodeproject.org/ENCBS455ALQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB668GUP)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB668GUP
size range: 200-210


title: PRO-cap from kidney (ENCLB667YZD)

description:
https://www.encodeproject.org/experiments/ENCSR660UDB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Kidney.
experiment encode accession: ENCSR660UDB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB667YZD

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens female adult (53 years) kidney tissue

value: kidney

value: ENCBS990UCT at ENCODE; https://www.encodeproject.org/ENCBS990UCT/


title: STARR-seq from K562 (ENCLB207OTV)

description:
https://www.encodeproject.org/experiments/ENCSR926NDZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR926NDZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR009QZL
encode release date: 2024-02-05
lab: Tim Reddy, Duke
library encode accession: ENCLB207OTV
size range: 300-800

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

extract_protocol:
general protocol: https://www.encodeproject.org/documents/038fa17f-2a0b-4ece-87c9-a85783d5f950/@@download/attachment/01_input_library_generation_detailed_KPS_2021.pdf
extraction method: RNeasy

value: Tim Reddy, Duke

value: ENCBS685VRL at ENCODE; https://www.encodeproject.org/ENCBS685VRL/


title: DNase-seq from activated B cell (ENCLB537PRP)

description:
https://www.encodeproject.org/experiments/ENCSR653JLD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR653JLD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB537PRP

source_name: Homo sapiens male adult (26 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: male

value: 26 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

tag: treatments

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS469PEJ at ENCODE; https://www.encodeproject.org/ENCBS469PEJ/


title: proliferation CRISPR screen from K562 (ENCLB235GYC)

description:
https://www.encodeproject.org/experiments/ENCSR162HMH/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen all >100,000 putative non-coding regulatory elements defined by open chromatin sites in human K562 leukemia cells for their role in regulating essential cellular processes (whole genome).
experiment encode accession: ENCSR162HMH
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR625TAF
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB235GYC

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS047JRA at ENCODE; https://www.encodeproject.org/ENCBS047JRA/


title: DNase-seq from T47D (ENCLB494VWE)

description:
https://www.encodeproject.org/experiments/ENCSR970IJN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR970IJN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB494VWE

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 120 hours

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS859ZPR at ENCODE; https://www.encodeproject.org/ENCBS859ZPR/


title: Flow-FISH CRISPR screen from K562 (ENCLB770ERT)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB770ERT
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS455ALQ at ENCODE; https://www.encodeproject.org/ENCBS455ALQ/


title: proliferation CRISPR screen from K562 (ENCLB138CPP)

description:
https://www.encodeproject.org/experiments/ENCSR162HMH/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen all >100,000 putative non-coding regulatory elements defined by open chromatin sites in human K562 leukemia cells for their role in regulating essential cellular processes (whole genome).
experiment encode accession: ENCSR162HMH
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR625TAF
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB138CPP

value: Tim Reddy, Duke

value: ENCBS281SVF at ENCODE; https://www.encodeproject.org/ENCBS281SVF/


title: DNase-seq from activated B cell (ENCLB065BWE)

description:
https://www.encodeproject.org/experiments/ENCSR653JLD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR653JLD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB065BWE

value: activated B cell

value: primary cell

value: male

value: 26 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS785HHJ at ENCODE; https://www.encodeproject.org/ENCBS785HHJ/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB635DHR)

description:
https://www.encodeproject.org/experiments/ENCSR066ARN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR066ARN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB635DHR

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: female

value: adult

value: 33 year

value: AllCells

value: ENCBS451NIA at ENCODE; https://www.encodeproject.org/ENCBS451NIA/


title: proliferation CRISPR screen from K562 (ENCLB382MQL)

description:
https://www.encodeproject.org/experiments/ENCSR162HMH/
***************
biological replicate number: 4
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen all >100,000 putative non-coding regulatory elements defined by open chromatin sites in human K562 leukemia cells for their role in regulating essential cellular processes (whole genome).
experiment encode accession: ENCSR162HMH
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR625TAF
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB382MQL

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS314PQK at ENCODE; https://www.encodeproject.org/ENCBS314PQK/


title: FACS CRISPR screen from WTC11 (ENCLB478WNS)

description:
https://www.encodeproject.org/experiments/ENCSR659YFO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR659YFO
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR418JRB
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB478WNS

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS145NSO at ENCODE; https://www.encodeproject.org/ENCBS145NSO/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB476NAH)

description:
https://www.encodeproject.org/experiments/ENCSR066ARN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR066ARN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476NAH

value: primary cell

value: John Stamatoyannopoulos, UW

value: ENCBS894OLZ at ENCODE; https://www.encodeproject.org/ENCBS894OLZ/


title: DNase-seq from activated B cell (ENCLB641ITA)

description:
https://www.encodeproject.org/experiments/ENCSR653JLD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR653JLD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB641ITA

value: activated B cell

value: adult

value: 26 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS842SET at ENCODE; https://www.encodeproject.org/ENCBS842SET/


title: PRO-cap from uterus (ENCLB834CPQ)

description:
https://www.encodeproject.org/experiments/ENCSR657RPS/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR657RPS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB834CPQ

source_name: Homo sapiens female adult (38 years) uterus tissue

value: uterus

value: tissue

value: female

value: 38 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS848HCV at ENCODE; https://www.encodeproject.org/ENCBS848HCV/


title: Flow-FISH CRISPR screen from K562 (ENCLB654AND)

description:
https://www.encodeproject.org/experiments/ENCSR951RMF/
***************
biological replicate number: 1
technical replicate number: 1
description: PVT1
experiment encode accession: ENCSR951RMF
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB654AND

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS784LES at ENCODE; https://www.encodeproject.org/ENCBS784LES/


title: Flow-FISH CRISPR screen from K562 (ENCLB929EVA)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB929EVA
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS928YXE at ENCODE; https://www.encodeproject.org/ENCBS928YXE/


title: PRO-cap from aorta (ENCLB595DAY)

description:
https://www.encodeproject.org/experiments/ENCSR657PSE/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Aorta.
experiment encode accession: ENCSR657PSE
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB595DAY

source_name: Homo sapiens female adult (41 years) aorta tissue

value: aorta

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS756FTG at ENCODE; https://www.encodeproject.org/ENCBS756FTG/


title: PRO-cap from aorta (ENCLB740DZD)

description:
https://www.encodeproject.org/experiments/ENCSR657PSE/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Aorta.
experiment encode accession: ENCSR657PSE
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB740DZD

value: tissue

value: female

value: Haiyuan Yu, Cornell


title: PRO-cap from uterus (ENCLB805SKF)

description:
https://www.encodeproject.org/experiments/ENCSR657RPS/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR657RPS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB805SKF

value: uterus

value: 38 year

value: CHTN

value: ENCBS848HCV at ENCODE; https://www.encodeproject.org/ENCBS848HCV/


title: STARR-seq from K562 (ENCLB033JKD)

description:
https://www.encodeproject.org/experiments/ENCSR926NDZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR926NDZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR009QZL
encode release date: 2024-02-05
lab: Tim Reddy, Duke
library encode accession: ENCLB033JKD
size range: 300-800

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS187RZI at ENCODE; https://www.encodeproject.org/ENCBS187RZI/


title: PRO-cap from heart left ventricle (ENCLB494CMH)

description:
https://www.encodeproject.org/experiments/ENCSR656ZDH/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR656ZDH
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB494CMH

value: heart left ventricle

value: adult

value: ENCBS413JEX at ENCODE; https://www.encodeproject.org/ENCBS413JEX/


title: Flow-FISH CRISPR screen from K562 (ENCLB584NVT)

description:
https://www.encodeproject.org/experiments/ENCSR925WKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR925WKN
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB584NVT

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS772TIF at ENCODE; https://www.encodeproject.org/ENCBS772TIF/


title: Flow-FISH CRISPR screen from K562 (ENCLB928ZQN)

description:
https://www.encodeproject.org/experiments/ENCSR925WKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR925WKN
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB928ZQN

value: female

value: ENCBS713OKM at ENCODE; https://www.encodeproject.org/ENCBS713OKM/


title: Flow-FISH CRISPR screen from K562 (ENCLB127DHW)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB127DHW
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS455ALQ at ENCODE; https://www.encodeproject.org/ENCBS455ALQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB108CNP)

description:
https://www.encodeproject.org/experiments/ENCSR897GNT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR897GNT
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB108CNP

value: ENCBS084ABJ at ENCODE; https://www.encodeproject.org/ENCBS084ABJ/


title: DNase-seq from activated T-cell (ENCLB365DOC)

description:
https://www.encodeproject.org/experiments/ENCSR647OEG/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR647OEG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB365DOC

source_name: Homo sapiens female adult (23 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: 23 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS168FQN at ENCODE; https://www.encodeproject.org/ENCBS168FQN/


title: DNase-seq from HUDEP-2 (ENCLB741QOG)

description:
https://www.encodeproject.org/experiments/ENCSR916FHK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR916FHK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB741QOG

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: male

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS345OQA at ENCODE; https://www.encodeproject.org/ENCBS345OQA/


title: DNase-seq from activated T-cell (ENCLB123TLR)

description:
https://www.encodeproject.org/experiments/ENCSR647OEG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR647OEG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123TLR

value: female

value: ENCBS924WOJ at ENCODE; https://www.encodeproject.org/ENCBS924WOJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB413MTI)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB413MTI
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS928YXE at ENCODE; https://www.encodeproject.org/ENCBS928YXE/


title: DNase-seq from brain (ENCLB282EIK)

description:
https://www.encodeproject.org/experiments/ENCSR882KPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR882KPJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB282EIK

source_name: Homo sapiens female adult (90 or above years) brain tissue

value: brain

value: tissue

value: 90 or above year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS484XBE at ENCODE; https://www.encodeproject.org/ENCBS484XBE/


title: Flow-FISH CRISPR screen from K562 (ENCLB276PLL)

description:
https://www.encodeproject.org/experiments/ENCSR065ZKH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR065ZKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB276PLL
size range: 200-210

value: cell line

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB719XGQ)

description:
https://www.encodeproject.org/experiments/ENCSR913DHP/
***************
biological replicate number: 1
technical replicate number: 1
description: PVT1
experiment encode accession: ENCSR913DHP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB719XGQ

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS784LES at ENCODE; https://www.encodeproject.org/ENCBS784LES/


title: PRO-cap from tibial artery (ENCLB825GDO)

description:
https://www.encodeproject.org/experiments/ENCSR642TRG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Tibial artery.
experiment encode accession: ENCSR642TRG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB825GDO

source_name: Homo sapiens female adult (53 years) tibial artery tissue

value: tibial artery

value: female

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS723TRH at ENCODE; https://www.encodeproject.org/ENCBS723TRH/


title: DNase-seq from GM12878 (ENCLB329XZK)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 20
technical replicate number: 3
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329XZK

source_name: Homo sapiens GM12878 cell line

value: unknown

value: Coriell

value: ENCBS272IWA at ENCODE; https://www.encodeproject.org/ENCBS272IWA/


title: Flow-FISH CRISPR screen from K562 (ENCLB880ULC)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB880ULC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS819SXS at ENCODE; https://www.encodeproject.org/ENCBS819SXS/


title: STARR-seq from HCT116 (ENCLB215HXI)

description:
https://www.encodeproject.org/experiments/ENCSR064KUD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR064KUD
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB215HXI
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens HCT116 cell line genetically modified (episome) using transient transfection

value: cell line

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: Kevin White, UChicago

value: ENCBS037ZAD at ENCODE; https://www.encodeproject.org/ENCBS037ZAD/


title: Flow-FISH CRISPR screen from K562 (ENCLB420FTN)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB420FTN
size range: 200-210

value: female


title: DNase-seq from activated T-cell (ENCLB630MEU)

description:
https://www.encodeproject.org/experiments/ENCSR647OEG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR647OEG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB630MEU

value: activated T-cell

value: primary cell

value: 23 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS529PTE at ENCODE; https://www.encodeproject.org/ENCBS529PTE/


title: DNase-seq from NCI-H1417 (ENCLB531LOS)

description:
https://www.encodeproject.org/experiments/ENCSR882HWI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR882HWI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB531LOS

source_name: Homo sapiens NCI-H1417 cell line treated with 0.1% DMSO for 48 hours

value: 61 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS574WGJ at ENCODE; https://www.encodeproject.org/ENCBS574WGJ/


title: STARR-seq from HCT116 (ENCLB828FDZ)

description:
https://www.encodeproject.org/experiments/ENCSR064KUD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR064KUD
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB828FDZ
fragmentation methods: shearing (generic)
size range: 200-600

value: cell line

value: male

value: colorectal carcinoma

value: ENCBS875RXC at ENCODE; https://www.encodeproject.org/ENCBS875RXC/


title: Flow-FISH CRISPR screen from K562 (ENCLB875YIV)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB875YIV
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS819SXS at ENCODE; https://www.encodeproject.org/ENCBS819SXS/


title: PRO-cap from Colon Carcinoma Metastatic in the Brain (ENCLB291MLM)

description:
https://www.encodeproject.org/experiments/ENCSR644TYW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic colon cancer to brain.
experiment encode accession: ENCSR644TYW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB291MLM

source_name: Homo sapiens male adult (56 years) Colon Carcinoma Metastatic in the Brain tissue

value: Colon Carcinoma Metastatic in the Brain

value: tissue

value: 56 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS218NLO at ENCODE; https://www.encodeproject.org/ENCBS218NLO/


title: Flow-FISH CRISPR screen from K562 (ENCLB684JWV)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB684JWV
size range: 200-210

value: female

value: ATCC

value: ENCBS412TLO at ENCODE; https://www.encodeproject.org/ENCBS412TLO/


title: DNase-seq from HUDEP-2 (ENCLB033YHD)

description:
https://www.encodeproject.org/experiments/ENCSR888TVR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR888TVR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB033YHD

value: cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS359SRF at ENCODE; https://www.encodeproject.org/ENCBS359SRF/


title: Flow-FISH CRISPR screen from K562 (ENCLB589IPY)

description:
https://www.encodeproject.org/experiments/ENCSR867VWP/
***************
biological replicate number: 1
technical replicate number: 1
description: NMU
experiment encode accession: ENCSR867VWP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR111BOI
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB589IPY

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS347CID at ENCODE; https://www.encodeproject.org/ENCBS347CID/


title: DNase-seq from HCT116 (ENCLB313RAL)

description:
https://www.encodeproject.org/experiments/ENCSR638LVT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR638LVT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB313RAL

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: Erez Aiden

value: ENCBS861LWR at ENCODE; https://www.encodeproject.org/ENCBS861LWR/


title: DNase-seq from activated B cell (ENCLB929YIO)

description:
https://www.encodeproject.org/experiments/ENCSR642YPV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR642YPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB929YIO

source_name: Homo sapiens female adult (54 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: female

value: 54 year

value: AllCells

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS654HBV at ENCODE; https://www.encodeproject.org/ENCBS654HBV/


title: Flow-FISH CRISPR screen from K562 (ENCLB847FSH)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB847FSH
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS819SXS at ENCODE; https://www.encodeproject.org/ENCBS819SXS/


title: Flow-FISH CRISPR screen from K562 (ENCLB082UPM)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB082UPM
size range: 200-210

value: adult

value: 53 year

value: ENCBS412TLO at ENCODE; https://www.encodeproject.org/ENCBS412TLO/


title: DNase-seq from HCT116 (ENCLB207MHN)

description:
https://www.encodeproject.org/experiments/ENCSR638LVT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR638LVT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB207MHN

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS580QZI at ENCODE; https://www.encodeproject.org/ENCBS580QZI/


title: Control CRISPR screen from K562 (ENCLB948JUX)

description:
https://www.encodeproject.org/experiments/ENCSR865UTQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR865UTQ
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB948JUX

value: female

value: Pardis Sabeti, Broad

value: ENCBS074HXL at ENCODE; https://www.encodeproject.org/ENCBS074HXL/


title: DNase-seq from activated B cell (ENCLB626XHT)

description:
https://www.encodeproject.org/experiments/ENCSR642YPV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR642YPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB626XHT

value: activated B cell

value: primary cell

value: 54 year

value: AllCells

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS549DBW at ENCODE; https://www.encodeproject.org/ENCBS549DBW/


title: Flow-FISH CRISPR screen from K562 (ENCLB562MNE)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB562MNE
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB194VSM)

description:
https://www.encodeproject.org/experiments/ENCSR897GNT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR897GNT
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB194VSM

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS786DTJ at ENCODE; https://www.encodeproject.org/ENCBS786DTJ/


title: DNase-seq from NCI-H1417 (ENCLB805BBG)

description:
https://www.encodeproject.org/experiments/ENCSR882HWI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR882HWI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB805BBG

value: female

value: 61 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS564CTK at ENCODE; https://www.encodeproject.org/ENCBS564CTK/


title: DNase-seq from HUDEP-2 (ENCLB399QJV)

description:
https://www.encodeproject.org/experiments/ENCSR855ZCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR855ZCO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB399QJV

value: male

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS802CEP at ENCODE; https://www.encodeproject.org/ENCBS802CEP/


title: DNase-seq from HCT116 (ENCLB823FQG)

description:
https://www.encodeproject.org/experiments/ENCSR638IGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR638IGJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB823FQG

value: cell line

value: colorectal carcinoma

value: 48 year

value: Erez Aiden

value: ENCBS873MCY at ENCODE; https://www.encodeproject.org/ENCBS873MCY/


title: DNase-seq from MCF-7 (ENCLB557UIX)

description:
https://www.encodeproject.org/experiments/ENCSR858XUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR858XUZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB557UIX

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 504 hours

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS629HMS at ENCODE; https://www.encodeproject.org/ENCBS629HMS/


title: Flow-FISH CRISPR screen from K562 (ENCLB411HVA)

description:
https://www.encodeproject.org/experiments/ENCSR867VWP/
***************
biological replicate number: 2
technical replicate number: 1
description: NMU
experiment encode accession: ENCSR867VWP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR111BOI
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB411HVA

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS187ALX at ENCODE; https://www.encodeproject.org/ENCBS187ALX/


title: DNase-seq from T-helper 17 cell (ENCLB585TFM)

description:
https://www.encodeproject.org/experiments/ENCSR641OEM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR641OEM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB585TFM

source_name: Homo sapiens male adult (50 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: male

value: 50 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS825UNA at ENCODE; https://www.encodeproject.org/ENCBS825UNA/


title: Control CRISPR screen from K562 (ENCLB275MRM)

description:
https://www.encodeproject.org/experiments/ENCSR865UTQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR865UTQ
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB275MRM

value: cell line

value: adult

value: ENCBS993SPL at ENCODE; https://www.encodeproject.org/ENCBS993SPL/


title: Flow-FISH CRISPR screen from K562 (ENCLB966TVC)

description:
https://www.encodeproject.org/experiments/ENCSR063QSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR063QSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB966TVC
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS412TLO at ENCODE; https://www.encodeproject.org/ENCBS412TLO/


title: PRO-cap from skeletal muscle tissue (ENCLB741RSE)

description:
https://www.encodeproject.org/experiments/ENCSR636RVF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Skeletal muscle of leg.
experiment encode accession: ENCSR636RVF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB741RSE

source_name: Homo sapiens female adult (42 years) skeletal muscle tissue

value: skeletal muscle tissue

value: tissue

value: female

value: 42 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS659SAX at ENCODE; https://www.encodeproject.org/ENCBS659SAX/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB017UUD)

description:
https://www.encodeproject.org/experiments/ENCSR061LMN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR061LMN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB017UUD

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: ENCBS735VNI at ENCODE; https://www.encodeproject.org/ENCBS735VNI/


title: PRO-cap from tibial artery (ENCLB032FYN)

description:
https://www.encodeproject.org/experiments/ENCSR642TRG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Tibial artery.
experiment encode accession: ENCSR642TRG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB032FYN

value: tibial artery

value: adult

value: 53 year

value: GTEx

value: ENCBS723TRH at ENCODE; https://www.encodeproject.org/ENCBS723TRH/


title: PRO-cap from pulmonary lymph node (ENCLB723AKZ)

description:
https://www.encodeproject.org/experiments/ENCSR633OWM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pulmonary lymph node.
experiment encode accession: ENCSR633OWM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB723AKZ

source_name: Homo sapiens female adult (58 years) pulmonary lymph node tissue

value: pulmonary lymph node

value: 58 year

value: ENCBS533TOQ at ENCODE; https://www.encodeproject.org/ENCBS533TOQ/


title: PRO-cap from skeletal muscle tissue (ENCLB115CFU)

description:
https://www.encodeproject.org/experiments/ENCSR636RVF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Skeletal muscle of leg.
experiment encode accession: ENCSR636RVF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB115CFU

value: skeletal muscle tissue

value: tissue

value: female

value: 42 year


title: Control CRISPR screen from K562 (ENCLB905IPR)

description:
https://www.encodeproject.org/experiments/ENCSR804HRD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR804HRD
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB905IPR

value: cell line

value: chronic myelogenous leukemia (CML)

value: Pardis Sabeti, Broad

value: ATCC

value: ENCBS001TVA at ENCODE; https://www.encodeproject.org/ENCBS001TVA/


title: Flow-FISH CRISPR screen from K562 (ENCLB625ALJ)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB625ALJ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS786UFN at ENCODE; https://www.encodeproject.org/ENCBS786UFN/


title: DNase-seq from HCT116 (ENCLB201VIH)

description:
https://www.encodeproject.org/experiments/ENCSR638LVT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR638LVT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB201VIH

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS578SZA at ENCODE; https://www.encodeproject.org/ENCBS578SZA/


title: DNase-seq from HCT116 (ENCLB702RKO)

description:
https://www.encodeproject.org/experiments/ENCSR638IGJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR638IGJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB702RKO

value: ENCBS114CFN at ENCODE; https://www.encodeproject.org/ENCBS114CFN/


title: DNase-seq from HUDEP-2 (ENCLB660ZLI)

description:
https://www.encodeproject.org/experiments/ENCSR062DKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR062DKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB660ZLI

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS530OLL at ENCODE; https://www.encodeproject.org/ENCBS530OLL/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB054YTJ)

description:
https://www.encodeproject.org/experiments/ENCSR061LMN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR061LMN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB054YTJ

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS556TPO at ENCODE; https://www.encodeproject.org/ENCBS556TPO/


title: Flow-FISH CRISPR screen from K562 (ENCLB148BKS)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB148BKS
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS897TYP at ENCODE; https://www.encodeproject.org/ENCBS897TYP/


title: Control CRISPR screen from K562 (ENCLB429CCT)

description:
https://www.encodeproject.org/experiments/ENCSR804HRD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR804HRD
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB429CCT

value: adult

value: Pardis Sabeti, Broad

value: ENCBS600GUZ at ENCODE; https://www.encodeproject.org/ENCBS600GUZ/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB782KLY)

description:
https://www.encodeproject.org/experiments/ENCSR062EZB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR062EZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB782KLY

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: 33 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS166KHR at ENCODE; https://www.encodeproject.org/ENCBS166KHR/


title: Flow-FISH CRISPR screen from K562 (ENCLB573LIB)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB573LIB
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB419CWR)

description:
https://www.encodeproject.org/experiments/ENCSR783JNB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR783JNB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB419CWR

value: male

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS449IKA at ENCODE; https://www.encodeproject.org/ENCBS449IKA/


title: CRISPR screen from K562 (ENCLB905QBM)

description:
https://www.encodeproject.org/experiments/ENCSR631KBC/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following survival
experiment encode accession: ENCSR631KBC
assay title: CRISPR screen
assembly: GRCh38
encode release date: 2022-10-11
lab: Yin Shen, UCSF
library encode accession: ENCLB905QBM

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 14 days after the sample was treated with Puromycin

value: cell line

value: female

value: Yin Shen, UCSF

value: ENCBS368KKY at ENCODE; https://www.encodeproject.org/ENCBS368KKY/


title: Flow-FISH CRISPR screen from K562 (ENCLB094YFN)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB094YFN
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS786UFN at ENCODE; https://www.encodeproject.org/ENCBS786UFN/


title: DNase-seq from HUDEP-2 (ENCLB411AWN)

description:
https://www.encodeproject.org/experiments/ENCSR824QCJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR824QCJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB411AWN

source_name: Homo sapiens HUDEP-2 cell line

value: adult

value: ENCBS121GPY at ENCODE; https://www.encodeproject.org/ENCBS121GPY/


title: DNase-seq from suppressor macrophage (ENCLB707XDI)

description:
https://www.encodeproject.org/experiments/ENCSR737KFS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR737KFS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB707XDI
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS864JUR at ENCODE; https://www.encodeproject.org/ENCBS864JUR/


title: PRO-cap from pulmonary lymph node (ENCLB391WWS)

description:
https://www.encodeproject.org/experiments/ENCSR633OWM/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pulmonary lymph node.
experiment encode accession: ENCSR633OWM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB391WWS

value: pulmonary lymph node

value: tissue

value: 58 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS533TOQ at ENCODE; https://www.encodeproject.org/ENCBS533TOQ/


title: DNase-seq from K562 (ENCLB705MZU)

description:
https://www.encodeproject.org/experiments/ENCSR820VVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR820VVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB705MZU

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS684MUT at ENCODE; https://www.encodeproject.org/ENCBS684MUT/


title: Control CRISPR screen from K562 (ENCLB176ERC)

description:
https://www.encodeproject.org/experiments/ENCSR625TAF/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR625TAF
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB176ERC

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction

value: adult

value: Tim Reddy, Duke

value: ATCC

value: ENCBS038EOR at ENCODE; https://www.encodeproject.org/ENCBS038EOR/


title: STARR-seq from K562 (ENCLB662LWF)

description:
https://www.encodeproject.org/experiments/ENCSR729EGU/
***************
biological replicate number: 1
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR729EGU
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR686XII
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB662LWF
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

value: ENCBS899IRU at ENCODE; https://www.encodeproject.org/ENCBS899IRU/


title: STARR-seq from K562 (ENCLB503MZS)

description:
https://www.encodeproject.org/experiments/ENCSR729EGU/
***************
biological replicate number: 2
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR729EGU
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR686XII
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB503MZS
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: ENCBS150EVE at ENCODE; https://www.encodeproject.org/ENCBS150EVE/


title: DNase-seq from HUDEP-2 (ENCLB284HYC)

description:
https://www.encodeproject.org/experiments/ENCSR834YVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR834YVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB284HYC

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS575NTC at ENCODE; https://www.encodeproject.org/ENCBS575NTC/


title: Flow-FISH CRISPR screen from K562 (ENCLB640QUC)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB640QUC
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS786UFN at ENCODE; https://www.encodeproject.org/ENCBS786UFN/


title: Flow-FISH CRISPR screen from K562 (ENCLB163MNV)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB163MNV
size range: 200-210

value: cell line

value: female

value: ENCBS897TYP at ENCODE; https://www.encodeproject.org/ENCBS897TYP/


title: DNase-seq from HUDEP-2 (ENCLB445UMX)

description:
https://www.encodeproject.org/experiments/ENCSR803GHI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR803GHI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB445UMX

value: ENCBS713VHQ at ENCODE; https://www.encodeproject.org/ENCBS713VHQ/


title: PRO-cap from skeletal muscle tissue (ENCLB356RRD)

description:
https://www.encodeproject.org/experiments/ENCSR632XIZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Skeletal muscle of arm.
experiment encode accession: ENCSR632XIZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB356RRD

source_name: Homo sapiens female adult (29 years) skeletal muscle tissue

value: skeletal muscle tissue

value: tissue

value: adult

value: 29 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS609THQ at ENCODE; https://www.encodeproject.org/ENCBS609THQ/


title: Control CRISPR screen from K562 (ENCLB360FAW)

description:
https://www.encodeproject.org/experiments/ENCSR625TAF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR625TAF
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB360FAW

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Tim Reddy, Duke

value: ATCC

value: ENCBS670WZO at ENCODE; https://www.encodeproject.org/ENCBS670WZO/


title: STARR-seq from K562 (ENCLB562VUS)

description:
https://www.encodeproject.org/experiments/ENCSR729EGU/
***************
biological replicate number: 3
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR729EGU
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR686XII
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB562VUS
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: ENCBS881YXO at ENCODE; https://www.encodeproject.org/ENCBS881YXO/


title: PRO-cap from skeletal muscle tissue (ENCLB118RUG)

description:
https://www.encodeproject.org/experiments/ENCSR632XIZ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Skeletal muscle of arm.
experiment encode accession: ENCSR632XIZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB118RUG


title: Flow-FISH CRISPR screen from K562 (ENCLB608BMK)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB608BMK
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: Jesse Engreitz, Stanford


title: Control CRISPR screen from K562 (ENCLB184FOI)

description:
https://www.encodeproject.org/experiments/ENCSR625TAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR625TAF
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB184FOI

value: female

value: ENCBS198EMJ at ENCODE; https://www.encodeproject.org/ENCBS198EMJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB750LPK)

description:
https://www.encodeproject.org/experiments/ENCSR061EUK/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR061EUK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB750LPK
size range: 200-210

value: ENCBS786UFN at ENCODE; https://www.encodeproject.org/ENCBS786UFN/


title: DNase-seq from K562 (ENCLB392KGN)

description:
https://www.encodeproject.org/experiments/ENCSR710DKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR710DKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB392KGN
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

value: John Stamatoyannopoulos, UW

value: ENCBS976MXP at ENCODE; https://www.encodeproject.org/ENCBS976MXP/


title: CRISPR screen from K562 (ENCLB144WMH)

description:
https://www.encodeproject.org/experiments/ENCSR631KBC/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following survival
experiment encode accession: ENCSR631KBC
assay title: CRISPR screen
assembly: GRCh38
encode release date: 2022-10-11
lab: Yin Shen, UCSF
library encode accession: ENCLB144WMH

value: adult

value: Yin Shen, UCSF

value: ENCBS735LNU at ENCODE; https://www.encodeproject.org/ENCBS735LNU/


title: PRO-cap from peritoneum (ENCLB204UTE)

description:
https://www.encodeproject.org/experiments/ENCSR624CVP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peritoneum.
experiment encode accession: ENCSR624CVP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB204UTE

source_name: Homo sapiens female adult (53 years) peritoneum tissue

value: peritoneum

value: tissue

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS305SJJ at ENCODE; https://www.encodeproject.org/ENCBS305SJJ/


title: PRO-cap from peritoneum (ENCLB156HHN)

description:
https://www.encodeproject.org/experiments/ENCSR624CVP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peritoneum.
experiment encode accession: ENCSR624CVP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB156HHN

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB987BVB)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB987BVB
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: ATCC

value: ENCBS932JRX at ENCODE; https://www.encodeproject.org/ENCBS932JRX/


title: Flow-FISH CRISPR screen from K562 (ENCLB207VNR)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB207VNR
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford


title: PRO-cap from ileum (ENCLB834FTB)

description:
https://www.encodeproject.org/experiments/ENCSR618ZHM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ileum.
experiment encode accession: ENCSR618ZHM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB834FTB

source_name: Homo sapiens female adult (62 years) ileum tissue

value: ileum

value: 62 year

value: CHTN

value: ENCBS642EAP at ENCODE; https://www.encodeproject.org/ENCBS642EAP/


title: Flow-FISH CRISPR screen from K562 (ENCLB385WJO)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB385WJO
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB454NFL)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB454NFL
size range: 200-210


title: Control CRISPR screen from K562 (ENCLB730OBC)

description:
https://www.encodeproject.org/experiments/ENCSR625TAF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR625TAF
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB730OBC

value: Tim Reddy, Duke

value: ENCBS183OCM at ENCODE; https://www.encodeproject.org/ENCBS183OCM/


title: Flow-FISH CRISPR screen from K562 (ENCLB079TIX)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB079TIX
size range: 200-210

value: ENCBS049UVF at ENCODE; https://www.encodeproject.org/ENCBS049UVF/


title: DNase-seq from HUDEP-2 (ENCLB124OMI)

description:
https://www.encodeproject.org/experiments/ENCSR184KYF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR184KYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB124OMI

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS544WFU at ENCODE; https://www.encodeproject.org/ENCBS544WFU/


title: DNase-seq from GDM1 (ENCLB346CNQ)

description:
https://www.encodeproject.org/experiments/ENCSR705NFY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR705NFY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB346CNQ

source_name: Homo sapiens GDM1 cell line

value: 66 year

value: Kristin Ardlie

value: ENCBS885TUE at ENCODE; https://www.encodeproject.org/ENCBS885TUE/


title: Flow-FISH CRISPR screen from K562 (ENCLB146OIQ)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB146OIQ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from cerebellar nuclear complex (ENCLB074LHA)

description:
https://www.encodeproject.org/experiments/ENCSR179ZAO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR179ZAO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB074LHA

source_name: Homo sapiens female adult (87 years) cerebellar nuclear complex tissue

value: cerebellar nuclear complex

value: tissue

value: adult

value: 87 year

value: Thomas Montine

value: ENCBS666SLB at ENCODE; https://www.encodeproject.org/ENCBS666SLB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB582ODR)

description:
https://www.encodeproject.org/experiments/ENCSR060YHM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060YHM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB582ODR

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS611NUE at ENCODE; https://www.encodeproject.org/ENCBS611NUE/


title: Flow-FISH CRISPR screen from K562 (ENCLB545JXV)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB545JXV
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS049UVF at ENCODE; https://www.encodeproject.org/ENCBS049UVF/


title: Flow-FISH CRISPR screen from K562 (ENCLB957SAV)

description:
https://www.encodeproject.org/experiments/ENCSR687CFN/
***************
biological replicate number: 2
technical replicate number: 1
description: CAT
experiment encode accession: ENCSR687CFN
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB957SAV

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS887HVF at ENCODE; https://www.encodeproject.org/ENCBS887HVF/


title: PRO-cap from ileum (ENCLB891YNX)

description:
https://www.encodeproject.org/experiments/ENCSR618ZHM/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ileum.
experiment encode accession: ENCSR618ZHM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB891YNX

value: ileum

value: tissue

value: adult

value: 62 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS642EAP at ENCODE; https://www.encodeproject.org/ENCBS642EAP/


title: Control CRISPR screen from K562 (ENCLB940UIN)

description:
https://www.encodeproject.org/experiments/ENCSR692ZUM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR692ZUM
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB940UIN

value: ENCBS351IBZ at ENCODE; https://www.encodeproject.org/ENCBS351IBZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB747RVP)

description:
https://www.encodeproject.org/experiments/ENCSR061EPE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR061EPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB747RVP
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford


title: DNase-seq from NCI-H1436 (ENCLB093LVE)

description:
https://www.encodeproject.org/experiments/ENCSR707CBD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR707CBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB093LVE

source_name: Homo sapiens NCI-H1436 cell line treated with 0.1% DMSO for 48 hours

value: male

value: 39 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS133KSJ at ENCODE; https://www.encodeproject.org/ENCBS133KSJ/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB774NMO)

description:
https://www.encodeproject.org/experiments/ENCSR610POV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR610POV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB774NMO

source_name: Homo sapiens female adult (40 years) Metastatic Breast Carcinoma in the Brain tissue

value: female

value: 40 year

value: ENCBS047LKP at ENCODE; https://www.encodeproject.org/ENCBS047LKP/


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCLB411UHZ)

description:
https://www.encodeproject.org/experiments/ENCSR617JRP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.
experiment encode accession: ENCSR617JRP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB411UHZ

source_name: Homo sapiens female adult (57 years) Metastatic Breast Carcinoma in the Ovary tissue

value: tissue

value: 57 year

value: ENCBS308UKM at ENCODE; https://www.encodeproject.org/ENCBS308UKM/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB292FTW)

description:
https://www.encodeproject.org/experiments/ENCSR060YHM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR060YHM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB292FTW

value: primary cell

value: adult

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS181HOM at ENCODE; https://www.encodeproject.org/ENCBS181HOM/


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCLB372POQ)

description:
https://www.encodeproject.org/experiments/ENCSR617JRP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.
experiment encode accession: ENCSR617JRP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB372POQ

value: Haiyuan Yu, Cornell

value: CHTN


title: Flow-FISH CRISPR screen from K562 (ENCLB853IOQ)

description:
https://www.encodeproject.org/experiments/ENCSR687CFN/
***************
biological replicate number: 1
technical replicate number: 1
description: CAT
experiment encode accession: ENCSR687CFN
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB853IOQ

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS361ZLR at ENCODE; https://www.encodeproject.org/ENCBS361ZLR/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB367WOK)

description:
https://www.encodeproject.org/experiments/ENCSR610POV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR610POV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB367WOK

value: tissue

value: female

value: 40 year

value: ENCBS047LKP at ENCODE; https://www.encodeproject.org/ENCBS047LKP/


title: Control CRISPR screen from K562 (ENCLB421LWQ)

description:
https://www.encodeproject.org/experiments/ENCSR692ZUM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR692ZUM
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB421LWQ

value: adult

value: ENCBS242PMT at ENCODE; https://www.encodeproject.org/ENCBS242PMT/


title: Flow-FISH CRISPR screen from K562 (ENCLB297FJE)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB297FJE
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS220JUV at ENCODE; https://www.encodeproject.org/ENCBS220JUV/


title: Control STARR-seq from K562 (ENCLB382QSZ)

description:
https://www.encodeproject.org/experiments/ENCSR686XII/
***************
biological replicate number: 3
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR686XII
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB382QSZ
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: Haiyuan Yu, Cornell

value: ENCBS881YXO at ENCODE; https://www.encodeproject.org/ENCBS881YXO/


title: DNase-seq from MCF-7 (ENCLB185RYR)

description:
https://www.encodeproject.org/experiments/ENCSR175QCV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR175QCV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB185RYR

source_name: Homo sapiens MCF-7 cell line

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: DSMZ

value: ENCBS103KLX at ENCODE; https://www.encodeproject.org/ENCBS103KLX/


title: DNase-seq from natural killer cell (ENCLB550KOZ)

description:
https://www.encodeproject.org/experiments/ENCSR618TIP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR618TIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB550KOZ

source_name: Homo sapiens male adult (47 years) natural killer primary cell

value: natural killer cell

value: primary cell

value: male

value: 47 year

value: Shelly Heimfeld

value: ENCBS615AAM at ENCODE; https://www.encodeproject.org/ENCBS615AAM/


title: Control STARR-seq from K562 (ENCLB337ZYE)

description:
https://www.encodeproject.org/experiments/ENCSR686XII/
***************
biological replicate number: 1
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR686XII
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB337ZYE
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS899IRU at ENCODE; https://www.encodeproject.org/ENCBS899IRU/


title: Flow-FISH CRISPR screen from K562 (ENCLB674EUY)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB674EUY
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ENCBS220JUV at ENCODE; https://www.encodeproject.org/ENCBS220JUV/


title: Flow-FISH CRISPR screen from K562 (ENCLB983SCD)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB983SCD
size range: 200-210

value: ENCBS582EKO at ENCODE; https://www.encodeproject.org/ENCBS582EKO/


title: Flow-FISH CRISPR screen from K562 (ENCLB848ODC)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB848ODC
size range: 200-210


title: Control STARR-seq from K562 (ENCLB833BQG)

description:
https://www.encodeproject.org/experiments/ENCSR686XII/
***************
biological replicate number: 2
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR686XII
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB833BQG
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: Haiyuan Yu, Cornell

value: ENCBS150EVE at ENCODE; https://www.encodeproject.org/ENCBS150EVE/


title: PRO-cap from esophagus squamous epithelium (ENCLB627WAT)

description:
https://www.encodeproject.org/experiments/ENCSR153AON/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Esophagus squamous epithelium.
experiment encode accession: ENCSR153AON
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB627WAT

source_name: Homo sapiens female adult (53 years) esophagus squamous epithelium tissue

value: esophagus squamous epithelium

value: tissue

value: GTEx

value: ENCBS620ERG at ENCODE; https://www.encodeproject.org/ENCBS620ERG/


title: PRO-cap from penis (ENCLB199QXH)

description:
https://www.encodeproject.org/experiments/ENCSR155NVW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Penis.
experiment encode accession: ENCSR155NVW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB199QXH

source_name: Homo sapiens male adult (50 years) penis tissue

value: penis

value: male

value: 50 year

value: CHTN

value: ENCBS517RRH at ENCODE; https://www.encodeproject.org/ENCBS517RRH/


title: PRO-cap from penis (ENCLB232PEA)

description:
https://www.encodeproject.org/experiments/ENCSR155NVW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Penis.
experiment encode accession: ENCSR155NVW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB232PEA

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB971ARL)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB971ARL
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC


title: DNase-seq from T47D (ENCLB118CMY)

description:
https://www.encodeproject.org/experiments/ENCSR683VUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR683VUZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB118CMY
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 1 nM diethylstilbestrol for 504 hours

value: cell line

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS463AHZ at ENCODE; https://www.encodeproject.org/ENCBS463AHZ/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB645RLH)

description:
https://www.encodeproject.org/experiments/ENCSR151UPI/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR151UPI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB645RLH

source_name: Homo sapiens male adult (26 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: 26 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS790HZI at ENCODE; https://www.encodeproject.org/ENCBS790HZI/


title: DNase-seq from MCF-7 (ENCLB162TPP)

description:
https://www.encodeproject.org/experiments/ENCSR175QCV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR175QCV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB162TPP

value: breast cancer (adenocarcinoma)

value: 69 year

value: DSMZ

value: ENCBS970IJS at ENCODE; https://www.encodeproject.org/ENCBS970IJS/


title: Flow-FISH CRISPR screen from K562 (ENCLB354DYL)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB354DYL
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS220JUV at ENCODE; https://www.encodeproject.org/ENCBS220JUV/


title: Flow-FISH CRISPR screen from K562 (ENCLB688CZW)

description:
https://www.encodeproject.org/experiments/ENCSR060KBF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR060KBF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB688CZW
size range: 200-210

value: cell line

value: ATCC

value: ENCBS925MCT at ENCODE; https://www.encodeproject.org/ENCBS925MCT/


title: DNase-seq from HUDEP-2 (ENCLB050EHF)

description:
https://www.encodeproject.org/experiments/ENCSR171DQX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR171DQX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB050EHF

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS177JDT at ENCODE; https://www.encodeproject.org/ENCBS177JDT/


title: DNase-seq from HUDEP-2 (ENCLB605SKJ)

description:
https://www.encodeproject.org/experiments/ENCSR674CYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR674CYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB605SKJ

value: ENCBS709PNT at ENCODE; https://www.encodeproject.org/ENCBS709PNT/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB323FVB)

description:
https://www.encodeproject.org/experiments/ENCSR151UPI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR151UPI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB323FVB

value: primary cell

value: 26 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS378FTL at ENCODE; https://www.encodeproject.org/ENCBS378FTL/


title: Flow-FISH CRISPR screen from K562 (ENCLB573YQD)

description:
https://www.encodeproject.org/experiments/ENCSR060PQR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR060PQR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB573YQD
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB628MQM)

description:
https://www.encodeproject.org/experiments/ENCSR060KBF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR060KBF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB628MQM
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS772BGH at ENCODE; https://www.encodeproject.org/ENCBS772BGH/