title: Control CRISPR screen from PC-3 (ENCLB503CBC)

description:
https://www.encodeproject.org/experiments/ENCSR325SWE/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR325SWE
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB503CBC
size range: 710-720

source_name: Homo sapiens PC-3 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: cell line

value: grade IV, adenocarcinoma

value: 62 year

value: ENCBS872YFF at ENCODE; https://www.encodeproject.org/ENCBS872YFF/


title: proliferation CRISPR screen from MCF-7 (ENCLB763WWL)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR325WCA/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR325WCA
assay title: proliferation CRISPR screen
possible controls: ENCSR198LPZ
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB763WWL
size range: 710-720

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: breast cancer (adenocarcinoma)

tag: dev stage

value: adult

tag: age

value: 69 year

tag: lab

value: Bing Ren, UCSD

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

tag: link

value: ENCBS360PYJ at ENCODE; https://www.encodeproject.org/ENCBS360PYJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB166ACG)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB166ACG
size range: 200-210

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS154PZI at ENCODE; https://www.encodeproject.org/ENCBS154PZI/


title: Control CRISPR screen from PC-3 (ENCLB864RSJ)

description:
https://www.encodeproject.org/experiments/ENCSR325SWE/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR325SWE
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB864RSJ
size range: 710-720

value: male

value: ENCBS841QGN at ENCODE; https://www.encodeproject.org/ENCBS841QGN/


title: Flow-FISH CRISPR screen from K562 (ENCLB135URI)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB135URI
size range: 200-210

value: cell line

value: ENCBS078HRV at ENCODE; https://www.encodeproject.org/ENCBS078HRV/


title: Flow-FISH CRISPR screen from K562 (ENCLB040QCT)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB040QCT
size range: 200-210

value: ENCBS171DEQ at ENCODE; https://www.encodeproject.org/ENCBS171DEQ/


title: DNase-seq from HUDEP-2 (ENCLB444DKK)

description:
https://www.encodeproject.org/experiments/ENCSR325HYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR325HYO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB444DKK

source_name: Homo sapiens HUDEP-2 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS722TAX at ENCODE; https://www.encodeproject.org/ENCBS722TAX/


title: Flow-FISH CRISPR screen from K562 (ENCLB984EYK)

description:
https://www.encodeproject.org/experiments/ENCSR550ZDC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR550ZDC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB984EYK
size range: 200-210

value: female

value: adult

value: ENCBS982GFS at ENCODE; https://www.encodeproject.org/ENCBS982GFS/


title: Flow-FISH CRISPR screen from K562 (ENCLB332INP)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB332INP
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB389LRB)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB389LRB
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB059SLJ)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB059SLJ
size range: 200-210

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB098POW)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB098POW
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS271YOI at ENCODE; https://www.encodeproject.org/ENCBS271YOI/


title: Flow-FISH CRISPR screen from K562 (ENCLB178ZWZ)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB178ZWZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB598LTT)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB598LTT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB036RWD)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB036RWD
size range: 200-210

value: ENCBS154PZI at ENCODE; https://www.encodeproject.org/ENCBS154PZI/


title: Flow-FISH CRISPR screen from K562 (ENCLB739XPJ)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB739XPJ
size range: 200-210

value: ENCBS765IZX at ENCODE; https://www.encodeproject.org/ENCBS765IZX/


title: Flow-FISH CRISPR screen from K562 (ENCLB273ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB273ZYZ
size range: 200-210

value: cell line

value: ENCBS624JVT at ENCODE; https://www.encodeproject.org/ENCBS624JVT/


title: Flow-FISH CRISPR screen from K562 (ENCLB817ZYQ)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB817ZYQ
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB719XXW)

description:
https://www.encodeproject.org/experiments/ENCSR325CHP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR325CHP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB719XXW

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: AllCells

value: ENCBS733DHJ at ENCODE; https://www.encodeproject.org/ENCBS733DHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB181EUU)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB181EUU
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB080NMX)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB080NMX
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB345EXD)

description:
https://www.encodeproject.org/experiments/ENCSR550MSE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR550MSE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB345EXD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB171OUU)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB171OUU
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB211POG)

description:
https://www.encodeproject.org/experiments/ENCSR322MGX/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screen
experiment encode accession: ENCSR322MGX
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB211POG

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 20 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS488GXV at ENCODE; https://www.encodeproject.org/ENCBS488GXV/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB361TRV)

description:
https://www.encodeproject.org/experiments/ENCSR548GMZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR548GMZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB361TRV

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS008UXJ at ENCODE; https://www.encodeproject.org/ENCBS008UXJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB112ZXP)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB112ZXP
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS624JVT at ENCODE; https://www.encodeproject.org/ENCBS624JVT/


title: proliferation CRISPR screen from K562 (ENCLB307ZBI)

description:
https://www.encodeproject.org/experiments/ENCSR322MGX/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for Cas9/CRISPR fine-mapping proliferation screens at hit and non-hit CTCF motifs in loop anchors (and their partner anchors) from the CTCF growth screen
experiment encode accession: ENCSR322MGX
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB307ZBI

value: female

value: ENCBS405VOV at ENCODE; https://www.encodeproject.org/ENCBS405VOV/


title: Flow-FISH CRISPR screen from K562 (ENCLB538DWC)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB538DWC
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB966PJH)

description:
https://www.encodeproject.org/experiments/ENCSR323QFP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR323QFP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB966PJH
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB415UMA)

description:
https://www.encodeproject.org/experiments/ENCSR546TAV/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR546TAV
assay title: proliferation CRISPR screen
possible controls: ENCSR819UNC
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB415UMA
size range: 710-720

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS525JOQ at ENCODE; https://www.encodeproject.org/ENCBS525JOQ/


title: DNase-seq from smooth muscle cell (ENCLB139VEI)

description:
https://www.encodeproject.org/experiments/ENCSR547XDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR547XDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB139VEI

source_name: Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells

value: smooth muscle cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: SESCC

value: ENCBS907FYA at ENCODE; https://www.encodeproject.org/ENCBS907FYA/


title: STARR-seq from MCF-7 (ENCLB997JFN)

description:
https://www.encodeproject.org/experiments/ENCSR547SBZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR547SBZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB997JFN
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens MCF-7 cell line genetically modified (episome) using transient transfection

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

tag: passage number

value: Kevin White, UChicago

value: ENCBS738UJZ at ENCODE; https://www.encodeproject.org/ENCBS738UJZ/


title: STARR-seq from MCF-7 (ENCLB673MMG)

description:
https://www.encodeproject.org/experiments/ENCSR547SBZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR547SBZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB673MMG
fragmentation methods: shearing (generic)
size range: 200-600

value: female

value: ATCC

value: ENCBS539KGI at ENCODE; https://www.encodeproject.org/ENCBS539KGI/


title: Flow-FISH CRISPR screen from K562 (ENCLB024OFM)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB024OFM
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS074KCV at ENCODE; https://www.encodeproject.org/ENCBS074KCV/


title: Flow-FISH CRISPR screen from K562 (ENCLB377TWT)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB377TWT
size range: 200-210

value: ENCBS587TPX at ENCODE; https://www.encodeproject.org/ENCBS587TPX/


title: Flow-FISH CRISPR screen from K562 (ENCLB548BOR)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB548BOR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB475PKJ)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB475PKJ
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB593XLI)

description:
https://www.encodeproject.org/experiments/ENCSR546TAV/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR546TAV
assay title: proliferation CRISPR screen
possible controls: ENCSR819UNC
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB593XLI
size range: 710-720

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS564EBW at ENCODE; https://www.encodeproject.org/ENCBS564EBW/


title: DNase-seq from immature natural killer cell (ENCLB698VAQ)

description:
https://www.encodeproject.org/experiments/ENCSR318IYF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR318IYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB698VAQ

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS605WBJ at ENCODE; https://www.encodeproject.org/ENCBS605WBJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB639SDO)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB639SDO
size range: 200-210

value: cell line

value: female

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB166BNE)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB166BNE
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB718SZX)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB718SZX
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS958BYT at ENCODE; https://www.encodeproject.org/ENCBS958BYT/


title: Flow-FISH CRISPR screen from K562 (ENCLB862XLM)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB862XLM
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB611QMW)

description:
https://www.encodeproject.org/experiments/ENCSR547RAS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR547RAS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB611QMW

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS161HTU at ENCODE; https://www.encodeproject.org/ENCBS161HTU/


title: Flow-FISH CRISPR screen from K562 (ENCLB403MDD)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB403MDD
size range: 200-210

value: ENCBS972PKP at ENCODE; https://www.encodeproject.org/ENCBS972PKP/


title: Flow-FISH CRISPR screen from K562 (ENCLB842PJA)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB842PJA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB703EJV)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB703EJV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB532WCT)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB532WCT
size range: 200-210


title: DNase-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB326UTV)

description:
https://www.encodeproject.org/experiments/ENCSR316DUO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR316DUO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB326UTV

source_name: Homo sapiens male adult (43 years) activated CD4 positive, naive alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: primary cell

value: male

value: 43 year

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS313FAQ at ENCODE; https://www.encodeproject.org/ENCBS313FAQ/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB584JLJ)

description:
https://www.encodeproject.org/experiments/ENCSR315ASD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR315ASD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB584JLJ

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: 42 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS723DKS at ENCODE; https://www.encodeproject.org/ENCBS723DKS/


title: Flow-FISH CRISPR screen from K562 (ENCLB765CWG)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB765CWG
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB767MWL)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB767MWL
size range: 200-210

value: ENCBS074KCV at ENCODE; https://www.encodeproject.org/ENCBS074KCV/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB716IXC)

description:
https://www.encodeproject.org/experiments/ENCSR541SYG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541SYG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB716IXC

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: Shelly Heimfeld

value: ENCBS078YSX at ENCODE; https://www.encodeproject.org/ENCBS078YSX/


title: Flow-FISH CRISPR screen from K562 (ENCLB623OLL)

description:
https://www.encodeproject.org/experiments/ENCSR545ODU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR545ODU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB623OLL
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB426NJH)

description:
https://www.encodeproject.org/experiments/ENCSR535XEZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR535XEZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB426NJH

source_name: Homo sapiens male adult (20 years) CD4-positive, alpha-beta T primary cell

value: male

value: 20 year

value: AllCells

value: ENCBS942KUM at ENCODE; https://www.encodeproject.org/ENCBS942KUM/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB560NGA)

description:
https://www.encodeproject.org/experiments/ENCSR535XEZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR535XEZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB560NGA

value: John Stamatoyannopoulos, UW

value: ENCBS558GFP at ENCODE; https://www.encodeproject.org/ENCBS558GFP/


title: Flow-FISH CRISPR screen from K562 (ENCLB459JAL)

description:
https://www.encodeproject.org/experiments/ENCSR317NSN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR317NSN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB459JAL
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS972PKP at ENCODE; https://www.encodeproject.org/ENCBS972PKP/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB824GRW)

description:
https://www.encodeproject.org/experiments/ENCSR536XRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR536XRT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB824GRW

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: adult

value: 38 year

value: ENCBS423EDO at ENCODE; https://www.encodeproject.org/ENCBS423EDO/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB333ONR)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB333ONR
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: acute monocytic leukemia

value: child

value: 1 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS835RXR at ENCODE; https://www.encodeproject.org/ENCBS835RXR/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB007CKM)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB007CKM
size range: 200-210

value: male

value: ENCBS052PMW at ENCODE; https://www.encodeproject.org/ENCBS052PMW/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB463YDN)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB463YDN
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB517PMT)

description:
https://www.encodeproject.org/experiments/ENCSR536ZNM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR536ZNM
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB517PMT
size range: 710-720

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS850YDH at ENCODE; https://www.encodeproject.org/ENCBS850YDH/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB421LVQ)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB421LVQ
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from THP-1 (ENCLB812AVP)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB812AVP
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB805NHF)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB805NHF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB077HJC)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB077HJC
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS010EIC at ENCODE; https://www.encodeproject.org/ENCBS010EIC/


title: Flow-FISH CRISPR screen from K562 (ENCLB447LWN)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB447LWN
size range: 200-210

value: adult

value: ENCBS167ZPZ at ENCODE; https://www.encodeproject.org/ENCBS167ZPZ/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB908SGW)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB908SGW
size range: 200-210

value: acute monocytic leukemia

value: child

value: 1 year


title: Flow-FISH CRISPR screen from K562 (ENCLB314JES)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB314JES
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB464SCA)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB464SCA
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB485END)

description:
https://www.encodeproject.org/experiments/ENCSR536ZNM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR536ZNM
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB485END
size range: 710-720

value: male

value: ENCBS144SWX at ENCODE; https://www.encodeproject.org/ENCBS144SWX/


title: Flow-FISH CRISPR screen from K562 (ENCLB345MXY)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB345MXY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB541QCP)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB541QCP
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB149ZTA)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB149ZTA
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB959BMK)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB959BMK
size range: 200-210

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: unknown

value: ENCBS475ZHC at ENCODE; https://www.encodeproject.org/ENCBS475ZHC/


title: DNase-seq from NCI-H2227 (ENCLB344TRZ)

description:
https://www.encodeproject.org/experiments/ENCSR307PHD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR307PHD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB344TRZ

source_name: Homo sapiens NCI-H2227 cell line treated with 0.1% DMSO for 48 hours

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS991ZFC at ENCODE; https://www.encodeproject.org/ENCBS991ZFC/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB801KSR)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB801KSR
size range: 200-210

value: cell line

value: female


title: Flow-FISH CRISPR screen from GM12878 (ENCLB620AHX)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB620AHX
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from GM12878 (ENCLB708DTG)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB708DTG
size range: 200-210

value: ENCBS051IKG at ENCODE; https://www.encodeproject.org/ENCBS051IKG/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB530ZGZ)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB530ZGZ
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB910GHK)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB910GHK
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB942CKH)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB942CKH
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB710VKC)

description:
https://www.encodeproject.org/experiments/ENCSR307GDA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR307GDA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB710VKC
size range: 200-210


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB604WPA)

description:
https://www.encodeproject.org/experiments/ENCSR306NPY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR306NPY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB604WPA

source_name: Homo sapiens male adult (24 years) effector memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: 24 year

value: AllCells

value: ENCBS899HSG at ENCODE; https://www.encodeproject.org/ENCBS899HSG/


title: Flow-FISH CRISPR screen from K562 (ENCLB317LRH)

description:
https://www.encodeproject.org/experiments/ENCSR308OSK/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR308OSK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB317LRH
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS010EIC at ENCODE; https://www.encodeproject.org/ENCBS010EIC/


title: DNase-seq from T-helper 17 cell (ENCLB747WUR)

description:
https://www.encodeproject.org/experiments/ENCSR306VGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR306VGY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB747WUR

source_name: Homo sapiens male adult (30 years) T-helper 17 primary cell

value: T-helper 17 cell

value: male

value: 30 year

value: ENCBS166AQR at ENCODE; https://www.encodeproject.org/ENCBS166AQR/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB816EWR)

description:
https://www.encodeproject.org/experiments/ENCSR309IHO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR309IHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB816EWR
size range: 200-210

value: cell line

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS835RXR at ENCODE; https://www.encodeproject.org/ENCBS835RXR/


title: Flow-FISH CRISPR screen from K562 (ENCLB288CGB)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB288CGB
size range: 200-210

value: female

value: adult

value: ENCBS709ZUI at ENCODE; https://www.encodeproject.org/ENCBS709ZUI/


title: Flow-FISH CRISPR screen from K562 (ENCLB470LMO)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB470LMO
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: ENCBS680OHZ at ENCODE; https://www.encodeproject.org/ENCBS680OHZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB145HCD)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB145HCD
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB800LMQ)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB800LMQ
size range: 200-210

value: ATCC


title: proliferation CRISPR screen from K562 (ENCLB752TAM)

description:
https://www.encodeproject.org/experiments/ENCSR303GYT/
***************
biological replicate number: 1
technical replicate number: 1
description: Tiling, Cas9/CRISPRk proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR303GYT
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB752TAM

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/efd73756-33ac-41e4-839d-949c78bbc8f6/@@download/attachment/greenleaf_gata1_myb_zmynd8_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS309PJH at ENCODE; https://www.encodeproject.org/ENCBS309PJH/


title: Flow-FISH CRISPR screen from K562 (ENCLB757RES)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB757RES
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB278JDE)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB278JDE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB188VZT)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB188VZT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB093XKQ)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB093XKQ
size range: 200-210

value: ENCBS280TKG at ENCODE; https://www.encodeproject.org/ENCBS280TKG/


title: Flow-FISH CRISPR screen from K562 (ENCLB878HBR)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB878HBR
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB389VOR)

description:
https://www.encodeproject.org/experiments/ENCSR303GYT/
***************
biological replicate number: 2
technical replicate number: 1
description: Tiling, Cas9/CRISPRk proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR303GYT
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB389VOR

value: ENCBS964OOU at ENCODE; https://www.encodeproject.org/ENCBS964OOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB930SPY)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB930SPY
size range: 200-210

value: ENCBS799XOR at ENCODE; https://www.encodeproject.org/ENCBS799XOR/


title: Flow-FISH CRISPR screen from K562 (ENCLB984UUR)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB984UUR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB608URW)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB608URW
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB519WIK)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB519WIK
size range: 200-210

value: ENCBS995QDX at ENCODE; https://www.encodeproject.org/ENCBS995QDX/


title: Flow-FISH CRISPR screen from K562 (ENCLB264PPN)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB264PPN
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB166OPB)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB166OPB
size range: 200-210

value: adult


title: DNase-seq from HUDEP-2 (ENCLB170XLH)

description:
https://www.encodeproject.org/experiments/ENCSR301NNN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR301NNN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB170XLH

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS788XZI at ENCODE; https://www.encodeproject.org/ENCBS788XZI/


title: Flow-FISH CRISPR screen from K562 (ENCLB791TYN)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB791TYN
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS225ZVD at ENCODE; https://www.encodeproject.org/ENCBS225ZVD/


title: Flow-FISH CRISPR screen from K562 (ENCLB138XDB)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB138XDB
size range: 200-210

value: cell line

value: ENCBS814JGY at ENCODE; https://www.encodeproject.org/ENCBS814JGY/


title: Flow-FISH CRISPR screen from K562 (ENCLB882CTZ)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB882CTZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB639DHV)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB639DHV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB756HPW)

description:
https://www.encodeproject.org/experiments/ENCSR304WRC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR304WRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB756HPW
size range: 200-210

value: ENCBS680OHZ at ENCODE; https://www.encodeproject.org/ENCBS680OHZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB201ASX)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB201ASX
size range: 200-210

value: ENCBS214ERZ at ENCODE; https://www.encodeproject.org/ENCBS214ERZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB594IAQ)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB594IAQ
size range: 200-210

value: ENCBS020HVJ at ENCODE; https://www.encodeproject.org/ENCBS020HVJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB519SJJ)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB519SJJ
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB813FJU)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB813FJU
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB981UGZ)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB981UGZ
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB918ZHI)

description:
https://www.encodeproject.org/experiments/ENCSR301INY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR301INY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB918ZHI

value: male

value: ENCBS764GXR at ENCODE; https://www.encodeproject.org/ENCBS764GXR/


title: DNase-seq from lower lobe of right lung (ENCLB305UPR)

description:
https://www.encodeproject.org/experiments/ENCSR299WPC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR299WPC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB305UPR

source_name: Homo sapiens male adult (60 years) lower lobe of right lung tissue

value: lower lobe of right lung

value: tissue

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS237JIN at ENCODE; https://www.encodeproject.org/ENCBS237JIN/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB644RFS)

description:
https://www.encodeproject.org/experiments/ENCSR301LKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR301LKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB644RFS

source_name: Homo sapiens female adult (25 years) stimulated activated naive CD4-positive, alpha-beta T primary cell

value: primary cell

value: 25 year

value: AllCells

value: ENCBS662CFM at ENCODE; https://www.encodeproject.org/ENCBS662CFM/


title: Flow-FISH CRISPR screen from K562 (ENCLB433IWW)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB433IWW
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS814JGY at ENCODE; https://www.encodeproject.org/ENCBS814JGY/


title: Flow-FISH CRISPR screen from K562 (ENCLB588AYC)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB588AYC
size range: 200-210

value: female

value: adult

value: ENCBS225ZVD at ENCODE; https://www.encodeproject.org/ENCBS225ZVD/


title: DNase-seq from lower lobe of right lung (ENCLB258AQD)

description:
https://www.encodeproject.org/experiments/ENCSR299WPC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR299WPC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB258AQD

value: lower lobe of right lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: ENCBS811RDD at ENCODE; https://www.encodeproject.org/ENCBS811RDD/


title: Flow-FISH CRISPR screen from K562 (ENCLB128NTD)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB128NTD
size range: 200-210

value: ENCBS607OCG at ENCODE; https://www.encodeproject.org/ENCBS607OCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB298BOW)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB298BOW
size range: 200-210

value: ENCBS643TEE at ENCODE; https://www.encodeproject.org/ENCBS643TEE/


title: Flow-FISH CRISPR screen from K562 (ENCLB582HEH)

description:
https://www.encodeproject.org/experiments/ENCSR532DXP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR532DXP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB582HEH
size range: 200-210

value: cell line

value: ENCBS799XOR at ENCODE; https://www.encodeproject.org/ENCBS799XOR/


title: Flow-FISH CRISPR screen from K562 (ENCLB353HNB)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB353HNB
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB428PXH)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428PXH
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB077GRF)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB077GRF
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB091OET)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091OET
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB426VYQ)

description:
https://www.encodeproject.org/experiments/ENCSR529OEG/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR529OEG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB426VYQ
size range: 200-210

value: ENCBS814JGY at ENCODE; https://www.encodeproject.org/ENCBS814JGY/


title: Flow-FISH CRISPR screen from K562 (ENCLB216PEL)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB216PEL
size range: 200-210

value: ENCBS590ABY at ENCODE; https://www.encodeproject.org/ENCBS590ABY/


title: Flow-FISH CRISPR screen from K562 (ENCLB583BNP)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB583BNP
size range: 200-210

value: ENCBS166UHJ at ENCODE; https://www.encodeproject.org/ENCBS166UHJ/


title: DNase-seq from heart left ventricle (ENCLB603UVH)

description:
https://www.encodeproject.org/experiments/ENCSR527TRA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527TRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB603UVH

source_name: Homo sapiens male adult (40 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS822JVV at ENCODE; https://www.encodeproject.org/ENCBS822JVV/


title: Flow-FISH CRISPR screen from K562 (ENCLB363DRQ)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB363DRQ
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS607OCG at ENCODE; https://www.encodeproject.org/ENCBS607OCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB102BVJ)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB102BVJ
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB572CAY)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB572CAY
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB754ZXF)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB754ZXF
size range: 200-210

value: ENCBS590ABY at ENCODE; https://www.encodeproject.org/ENCBS590ABY/


title: Flow-FISH CRISPR screen from K562 (ENCLB994VPP)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB994VPP
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB009QXW)

description:
https://www.encodeproject.org/experiments/ENCSR298FNY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298FNY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB009QXW

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS574UMN at ENCODE; https://www.encodeproject.org/ENCBS574UMN/


title: Flow-FISH CRISPR screen from K562 (ENCLB363ISN)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB363ISN
size range: 200-210

value: ENCBS861WET at ENCODE; https://www.encodeproject.org/ENCBS861WET/


title: Flow-FISH CRISPR screen from K562 (ENCLB437FYD)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB437FYD
size range: 200-210

value: ENCBS885ZRQ at ENCODE; https://www.encodeproject.org/ENCBS885ZRQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB922UZW)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB922UZW
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB506JFQ)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB506JFQ
size range: 200-210

value: ENCBS166UHJ at ENCODE; https://www.encodeproject.org/ENCBS166UHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB268KUQ)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB268KUQ
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB357IBN)

description:
https://www.encodeproject.org/experiments/ENCSR527GLS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527GLS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB357IBN

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS699LYN at ENCODE; https://www.encodeproject.org/ENCBS699LYN/


title: Flow-FISH CRISPR screen from K562 (ENCLB044CGL)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB044CGL
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB091FHV)

description:
https://www.encodeproject.org/experiments/ENCSR297CAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR297CAE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB091FHV

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: AllCells

value: ENCBS487NSU at ENCODE; https://www.encodeproject.org/ENCBS487NSU/


title: Flow-FISH CRISPR screen from K562 (ENCLB379AKS)

description:
https://www.encodeproject.org/experiments/ENCSR527GMG/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR527GMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB379AKS
size range: 200-210

value: female

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB350NNA)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB350NNA
size range: 200-210

value: ENCBS564KWK at ENCODE; https://www.encodeproject.org/ENCBS564KWK/


title: Flow-FISH CRISPR screen from K562 (ENCLB933IWO)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB933IWO
size range: 200-210

value: ENCBS504NCG at ENCODE; https://www.encodeproject.org/ENCBS504NCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB217TGV)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB217TGV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB330FAX)

description:
https://www.encodeproject.org/experiments/ENCSR298MDI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR298MDI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB330FAX
size range: 200-210

value: ENCBS607OCG at ENCODE; https://www.encodeproject.org/ENCBS607OCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB349UVR)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB349UVR
size range: 200-210

value: ENCBS885ZRQ at ENCODE; https://www.encodeproject.org/ENCBS885ZRQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB224XFD)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB224XFD
size range: 200-210

value: ENCBS861WET at ENCODE; https://www.encodeproject.org/ENCBS861WET/


title: DNase-seq from HUDEP-2 (ENCLB467REK)

description:
https://www.encodeproject.org/experiments/ENCSR526ANP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR526ANP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB467REK

value: cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS630YIL at ENCODE; https://www.encodeproject.org/ENCBS630YIL/


title: Flow-FISH CRISPR screen from K562 (ENCLB749RTM)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB749RTM
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB375RVM)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB375RVM
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB198SIW)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB198SIW
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from Jurkat (ENCLB963HRH)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB963HRH
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 5 ug/mL anti-CD3 for 4 hours, 100 ng/mL phorbol 12-myristate 13-acetate for 4 hours

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS349MGJ at ENCODE; https://www.encodeproject.org/ENCBS349MGJ/


title: DNase-seq from K562 (ENCLB309OCQ)

description:
https://www.encodeproject.org/experiments/ENCSR295RGD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR295RGD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB309OCQ

source_name: Homo sapiens K562 cell line

value: 53 year

value: ATCC

value: ENCBS105EOS at ENCODE; https://www.encodeproject.org/ENCBS105EOS/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB963NLH)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB963NLH
size range: 200-210

value: cell line

value: male

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from Jurkat (ENCLB250HCY)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB250HCY
size range: 200-210

value: ENCBS339URC at ENCODE; https://www.encodeproject.org/ENCBS339URC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB475GSX)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB475GSX
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB311FOB)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB311FOB
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB719JHZ)

description:
https://www.encodeproject.org/experiments/ENCSR521EVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR521EVK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB719JHZ

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS463EES at ENCODE; https://www.encodeproject.org/ENCBS463EES/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB923DPW)

description:
https://www.encodeproject.org/experiments/ENCSR292ZPF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR292ZPF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB923DPW

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours

value: female

value: adult

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS345EXT at ENCODE; https://www.encodeproject.org/ENCBS345EXT/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB180FCG)

description:
https://www.encodeproject.org/experiments/ENCSR518ZID/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR518ZID
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB180FCG

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS787QGY at ENCODE; https://www.encodeproject.org/ENCBS787QGY/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB182CAE)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB182CAE
size range: 200-210

value: Jurkat

value: cell line

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ATCC

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from Jurkat (ENCLB295FOG)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB295FOG
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: ENCBS341LZS at ENCODE; https://www.encodeproject.org/ENCBS341LZS/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB884LHF)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB884LHF
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB821HYL)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB821HYL
size range: 200-210

value: ENCBS928LVZ at ENCODE; https://www.encodeproject.org/ENCBS928LVZ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB606ANN)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB606ANN
size range: 200-210

value: ENCBS339URC at ENCODE; https://www.encodeproject.org/ENCBS339URC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB633LHQ)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB633LHQ
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB698JET)

description:
https://www.encodeproject.org/experiments/ENCSR524HYW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR524HYW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB698JET
size range: 200-210

value: ENCBS349MGJ at ENCODE; https://www.encodeproject.org/ENCBS349MGJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB002ZAD)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB002ZAD
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS564KWK at ENCODE; https://www.encodeproject.org/ENCBS564KWK/


title: Flow-FISH CRISPR screen from K562 (ENCLB463DBA)

description:
https://www.encodeproject.org/experiments/ENCSR296ANQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR296ANQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB463DBA
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB809OQL)

description:
https://www.encodeproject.org/experiments/ENCSR297DDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR297DDV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB809OQL
size range: 200-210

value: ENCBS885ZRQ at ENCODE; https://www.encodeproject.org/ENCBS885ZRQ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB043NAH)

description:
https://www.encodeproject.org/experiments/ENCSR518ZID/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR518ZID
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043NAH

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS744KBJ at ENCODE; https://www.encodeproject.org/ENCBS744KBJ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB877GCV)

description:
https://www.encodeproject.org/experiments/ENCSR293UHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR293UHG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB877GCV

value: CD4-positive, alpha-beta T cell

value: 39 year

value: Shelly Heimfeld

value: ENCBS925FMV at ENCODE; https://www.encodeproject.org/ENCBS925FMV/