title: PRO-cap from right lobe of liver (ENCLB437JIS)

description:
https://www.encodeproject.org/experiments/ENCSR575NNF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR575NNF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB437JIS

source_name: Homo sapiens female adult (41 years) right lobe of liver tissue

value: right lobe of liver

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS949MLY at ENCODE; https://www.encodeproject.org/ENCBS949MLY/


title: PRO-cap from ovary (ENCLB985JFI)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR357VUN/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR357VUN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB985JFI

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens female adult (45 years) ovary tissue

value: ovary

value: tissue

tag: biosample encode accession

tag: encode accession

tag: Sex

tag: dev stage

value: adult

tag: age

value: 45 year

tag: lab

value: Haiyuan Yu, Cornell

tag: source

value: CHTN

tag: link

value: ENCBS177BYG at ENCODE; https://www.encodeproject.org/ENCBS177BYG/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB698ZCJ)

description:
https://www.encodeproject.org/experiments/ENCSR575EOB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR575EOB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB698ZCJ

source_name: Homo sapiens female adult (41 years) Metastatic Breast Carcinoma in the Brain tissue

value: ENCBS898YTR at ENCODE; https://www.encodeproject.org/ENCBS898YTR/


title: Flow-FISH CRISPR screen from K562 (ENCLB590DWL)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB590DWL
size range: 200-210

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS803RTB at ENCODE; https://www.encodeproject.org/ENCBS803RTB/


title: Flow-FISH CRISPR screen from K562 (ENCLB582MUE)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB582MUE
size range: 200-210

value: female

value: ENCBS545VAW at ENCODE; https://www.encodeproject.org/ENCBS545VAW/


title: PRO-cap from ovary (ENCLB614UDV)

description:
https://www.encodeproject.org/experiments/ENCSR574ZMF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR574ZMF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB614UDV

source_name: Homo sapiens female adult (59 years) ovary tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder

value: ENCBS691NKR at ENCODE; https://www.encodeproject.org/ENCBS691NKR/


title: DNase-seq from inflammatory macrophage (ENCLB677OAK)

description:
https://www.encodeproject.org/experiments/ENCSR637ELM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR637ELM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB677OAK
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours

value: inflammatory macrophage

value: primary cell

value: male

value: adult

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

tag: treatments

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS740SKI at ENCODE; https://www.encodeproject.org/ENCBS740SKI/


title: PRO-cap from ovary (ENCLB097JJP)

description:
https://www.encodeproject.org/experiments/ENCSR574ZMF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR574ZMF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB097JJP

value: ovary

value: tissue

value: Haiyuan Yu, Cornell


title: PRO-cap from mesothelial cell of epicardium (ENCLB733MFQ)

description:
https://www.encodeproject.org/experiments/ENCSR571OAW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived epicardium (mesothelium).
experiment encode accession: ENCSR571OAW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB733MFQ

source_name: Homo sapiens female embryo (5 days) mesothelial of epicardium in vitro differentiated cells

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: female

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein

value: ENCBS519ODM at ENCODE; https://www.encodeproject.org/ENCBS519ODM/


title: Flow-FISH CRISPR screen from K562 (ENCLB114ANF)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB114ANF
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS388ITS at ENCODE; https://www.encodeproject.org/ENCBS388ITS/


title: PRO-cap from SP-49 (ENCLB872ZWI)

description:
https://www.encodeproject.org/experiments/ENCSR353ZXW/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SP49.
experiment encode accession: ENCSR353ZXW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB872ZWI

source_name: Homo sapiens SP-49 cell line

value: 58 year

value: Russell Ryan

value: ENCBS594KNU at ENCODE; https://www.encodeproject.org/ENCBS594KNU/


title: PRO-cap from spinal cord (ENCLB531LJP)

description:
https://www.encodeproject.org/experiments/ENCSR353JON/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spinal cord.
experiment encode accession: ENCSR353JON
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB531LJP

source_name: Homo sapiens spinal cord tissue

value: spinal cord

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS648XJR at ENCODE; https://www.encodeproject.org/ENCBS648XJR/


title: PRO-cap from SP-49 (ENCLB518DLN)

description:
https://www.encodeproject.org/experiments/ENCSR353ZXW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SP49.
experiment encode accession: ENCSR353ZXW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB518DLN

value: cell line

value: female

value: ENCBS371DGZ at ENCODE; https://www.encodeproject.org/ENCBS371DGZ/


title: DNase-seq from inflammatory macrophage (ENCLB888WRJ)

description:
https://www.encodeproject.org/experiments/ENCSR637ELM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR637ELM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB888WRJ
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

value: inflammatory macrophage

value: primary cell

value: male

value: adult

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS270GSP at ENCODE; https://www.encodeproject.org/ENCBS270GSP/


title: PRO-cap from mesothelial cell of epicardium (ENCLB601PTY)

description:
https://www.encodeproject.org/experiments/ENCSR571OAW/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived epicardium (mesothelium).
experiment encode accession: ENCSR571OAW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB601PTY

value: mesothelial cell of epicardium

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein

value: ENCBS936OUC at ENCODE; https://www.encodeproject.org/ENCBS936OUC/


title: PRO-cap from right lobe of liver (ENCLB823CJI)

description:
https://www.encodeproject.org/experiments/ENCSR575NNF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR575NNF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB823CJI

value: right lobe of liver

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS949MLY at ENCODE; https://www.encodeproject.org/ENCBS949MLY/


title: Flow-FISH CRISPR screen from K562 (ENCLB177WBH)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB177WBH
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS545VAW at ENCODE; https://www.encodeproject.org/ENCBS545VAW/


title: PRO-cap from upper lobe of left lung (ENCLB097VIX)

description:
https://www.encodeproject.org/experiments/ENCSR347PQY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Upper lobe of left lung.
experiment encode accession: ENCSR347PQY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB097VIX

source_name: Homo sapiens female adult (53 years) upper lobe of left lung tissue

value: upper lobe of left lung

value: GTEx

value: ENCBS821TCB at ENCODE; https://www.encodeproject.org/ENCBS821TCB/


title: Flow-FISH CRISPR screen from K562 (ENCLB083XKS)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB083XKS
size range: 200-210


title: PRO-cap from upper lobe of left lung (ENCLB899JQD)

description:
https://www.encodeproject.org/experiments/ENCSR347PQY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Upper lobe of left lung.
experiment encode accession: ENCSR347PQY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB899JQD

value: tissue


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB116WRE)

description:
https://www.encodeproject.org/experiments/ENCSR575EOB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR575EOB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB116WRE

value: female

value: CHTN

value: ENCBS898YTR at ENCODE; https://www.encodeproject.org/ENCBS898YTR/


title: DNase-seq from HCT116 (ENCLB791RWJ)

description:
https://www.encodeproject.org/experiments/ENCSR374TMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR374TMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB791RWJ

source_name: Homo sapiens HCT116 cell line

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS788RXG at ENCODE; https://www.encodeproject.org/ENCBS788RXG/


title: PRO-cap from neuron (ENCLB864XKX)

description:
https://www.encodeproject.org/experiments/ENCSR342WAR/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived excitatory cortical neurons.
experiment encode accession: ENCSR342WAR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB864XKX

source_name: Homo sapiens male adult (53 years) neuron in vitro differentiated cells

value: neuron

value: in vitro differentiated cells

value: adult

value: 53 year

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS014KRI at ENCODE; https://www.encodeproject.org/ENCBS014KRI/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB526KIU)

description:
https://www.encodeproject.org/experiments/ENCSR562YXE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562YXE
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR466IBU
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB526KIU

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens FMR1, genetically modified (insertion) using transduction, genetically modified using ...

value: glutamatergic neuron

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS701DBR at ENCODE; https://www.encodeproject.org/ENCBS701DBR/


title: PRO-cap from pancreas (ENCLB956XHC)

description:
https://www.encodeproject.org/experiments/ENCSR338WJS/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR338WJS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB956XHC

source_name: Homo sapiens pancreas organoid

value: pancreas

value: organoid

value: male

value: 54 year

value: Michael Snyder

value: ENCBS299CCQ at ENCODE; https://www.encodeproject.org/ENCBS299CCQ/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB522DQY)

description:
https://www.encodeproject.org/experiments/ENCSR562YXE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR562YXE
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR466IBU
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB522DQY

value: in vitro differentiated cells

value: ENCBS250WPO at ENCODE; https://www.encodeproject.org/ENCBS250WPO/


title: Flow-FISH CRISPR screen from K562 (ENCLB870TKJ)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB870TKJ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS545VAW at ENCODE; https://www.encodeproject.org/ENCBS545VAW/


title: PRO-cap from neuron (ENCLB421ERG)

description:
https://www.encodeproject.org/experiments/ENCSR342WAR/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived excitatory cortical neurons.
experiment encode accession: ENCSR342WAR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB421ERG

value: neuron

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS423YDP at ENCODE; https://www.encodeproject.org/ENCBS423YDP/


title: Flow-FISH CRISPR screen from K562 (ENCLB322AQE)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB322AQE
size range: 200-210

value: ENCBS803RTB at ENCODE; https://www.encodeproject.org/ENCBS803RTB/


title: Flow-FISH CRISPR screen from K562 (ENCLB501HCS)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB501HCS
size range: 200-210


title: PRO-cap from OCI-LY7 (ENCLB062UOA)

description:
https://www.encodeproject.org/experiments/ENCSR335ZMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in OCI-LY7.
experiment encode accession: ENCSR335ZMZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB062UOA

source_name: Homo sapiens OCI-LY7 cell line

value: male

value: B cell lymphoma

value: 48 year

value: Mats Ljungman

value: ENCBS329UUU at ENCODE; https://www.encodeproject.org/ENCBS329UUU/


title: Flow-FISH CRISPR screen from K562 (ENCLB659ZTX)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB659ZTX
size range: 200-210

value: cell line

value: female

value: ENCBS852WJY at ENCODE; https://www.encodeproject.org/ENCBS852WJY/


title: PRO-cap from liver (ENCLB102EAJ)

description:
https://www.encodeproject.org/experiments/ENCSR331UGM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.
experiment encode accession: ENCSR331UGM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB102EAJ

source_name: Homo sapiens liver tissue

value: liver

value: tissue

value: not collected

value: unknown

value: Michael Snyder

value: ENCBS270VVG at ENCODE; https://www.encodeproject.org/ENCBS270VVG/


title: PRO-cap from OCI-LY7 (ENCLB266WDI)

description:
https://www.encodeproject.org/experiments/ENCSR335ZMZ/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in OCI-LY7.
experiment encode accession: ENCSR335ZMZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB266WDI

value: adult

value: Haiyuan Yu, Cornell

value: ENCBS080RZR at ENCODE; https://www.encodeproject.org/ENCBS080RZR/


title: PRO-cap from liver (ENCLB118NCI)

description:
https://www.encodeproject.org/experiments/ENCSR331UGM/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.
experiment encode accession: ENCSR331UGM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB118NCI


title: proliferation CRISPR screen from K562 (ENCLB309XMK)

description:
https://www.encodeproject.org/experiments/ENCSR325SMP/
***************
biological replicate number: 2
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR325SMP
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB309XMK

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 0 days after the sample was treated with Puromycin

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Yin Shen, UCSF

value: ATCC

value: ENCBS074MKG at ENCODE; https://www.encodeproject.org/ENCBS074MKG/


title: PRO-cap from Colon Carcinoma Metastatic in the Lung (ENCLB313URS)

description:
https://www.encodeproject.org/experiments/ENCSR331QXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic colon cancer to lung.
experiment encode accession: ENCSR331QXJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB313URS

source_name: Homo sapiens female adult (72 years) Colon Carcinoma Metastatic in the Lung tissue

value: Colon Carcinoma Metastatic in the Lung

value: 72 year

value: CHTN

value: ENCBS495UUM at ENCODE; https://www.encodeproject.org/ENCBS495UUM/


title: Flow-FISH CRISPR screen from K562 (ENCLB643SHT)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB643SHT
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: ENCBS286UDN at ENCODE; https://www.encodeproject.org/ENCBS286UDN/


title: Flow-FISH CRISPR screen from K562 (ENCLB485GQW)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB485GQW
size range: 200-210


title: PRO-cap from neural crest cell (ENCLB963CLS)

description:
https://www.encodeproject.org/experiments/ENCSR321WCE/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived neural crest cells.
experiment encode accession: ENCSR321WCE
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB963CLS

source_name: Homo sapiens female embryo (5 days) neural crest in vitro differentiated cells

value: neural crest cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: Bradley Bernstein

value: ENCBS675JBE at ENCODE; https://www.encodeproject.org/ENCBS675JBE/


title: proliferation CRISPR screen from K562 (ENCLB228JKF)

description:
https://www.encodeproject.org/experiments/ENCSR325SMP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR325SMP
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB228JKF

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Yin Shen, UCSF

value: ATCC

value: ENCBS916BEH at ENCODE; https://www.encodeproject.org/ENCBS916BEH/


title: DNase-seq from T-cell (ENCLB831EXI)

description:
https://www.encodeproject.org/experiments/ENCSR326GZS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR326GZS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB831EXI

source_name: Homo sapiens male adult (43 years) T-cell primary cell

value: T-cell

value: primary cell

value: male

value: 43 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: ENCBS859UVT at ENCODE; https://www.encodeproject.org/ENCBS859UVT/


title: Flow-FISH CRISPR screen from K562 (ENCLB497GLG)

description:
https://www.encodeproject.org/experiments/ENCSR637ASK/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR637ASK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB497GLG
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: ENCBS803RTB at ENCODE; https://www.encodeproject.org/ENCBS803RTB/


title: PRO-cap from neural crest cell (ENCLB557AAW)

description:
https://www.encodeproject.org/experiments/ENCSR321WCE/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived neural crest cells.
experiment encode accession: ENCSR321WCE
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB557AAW

value: neural crest cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS100VQU at ENCODE; https://www.encodeproject.org/ENCBS100VQU/


title: PRO-cap from stomach (ENCLB149DUZ)

description:
https://www.encodeproject.org/experiments/ENCSR548GOG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Stomach.
experiment encode accession: ENCSR548GOG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB149DUZ

source_name: Homo sapiens female adult (53 years) stomach tissue

value: stomach

value: tissue

value: adult

value: 53 year

value: GTEx

value: ENCBS419PWQ at ENCODE; https://www.encodeproject.org/ENCBS419PWQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB800KHN)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB800KHN
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ATCC

value: ENCBS852WJY at ENCODE; https://www.encodeproject.org/ENCBS852WJY/


title: PRO-cap from pancreas (ENCLB227TBZ)

description:
https://www.encodeproject.org/experiments/ENCSR338WJS/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR338WJS
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB227TBZ

value: pancreas

value: organoid

value: male

value: 54 year

value: Michael Snyder

value: ENCBS299CCQ at ENCODE; https://www.encodeproject.org/ENCBS299CCQ/


title: DNase-seq from T-cell (ENCLB395BWU)

description:
https://www.encodeproject.org/experiments/ENCSR326GZS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR326GZS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB395BWU

value: T-cell

value: primary cell

value: 43 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: ENCBS423UXK at ENCODE; https://www.encodeproject.org/ENCBS423UXK/


title: STARR-seq from A549 (ENCLB078BIP)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB078BIP
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM RU486 (antagonist) for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: cell line

value: adult

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:RU486; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS223VDH at ENCODE; https://www.encodeproject.org/ENCBS223VDH/


title: PRO-cap from stomach (ENCLB576OBP)

description:
https://www.encodeproject.org/experiments/ENCSR548GOG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Stomach.
experiment encode accession: ENCSR548GOG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB576OBP

value: stomach

value: tissue

value: female

value: 53 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS419PWQ at ENCODE; https://www.encodeproject.org/ENCBS419PWQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB741NGT)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB741NGT
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS852WJY at ENCODE; https://www.encodeproject.org/ENCBS852WJY/


title: Flow-FISH CRISPR screen from K562 (ENCLB645QEK)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB645QEK
size range: 200-210

value: cell line

value: ENCBS286UDN at ENCODE; https://www.encodeproject.org/ENCBS286UDN/


title: Flow-FISH CRISPR screen from K562 (ENCLB325TEV)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB325TEV
size range: 200-210

value: adult


title: STARR-seq from A549 (ENCLB095ECF)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB095ECF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: Tim Reddy, Duke


title: Flow-FISH CRISPR screen from K562 (ENCLB708FLW)

description:
https://www.encodeproject.org/experiments/ENCSR636HVY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR636HVY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB708FLW
size range: 200-210


title: STARR-seq from A549 (ENCLB559RUA)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB559RUA
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: treatment_term_name:RU486; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS028BAJ at ENCODE; https://www.encodeproject.org/ENCBS028BAJ/


title: STARR-seq from A549 (ENCLB147XFK)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB147XFK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS983INB at ENCODE; https://www.encodeproject.org/ENCBS983INB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB724GRT)

description:
https://www.encodeproject.org/experiments/ENCSR635SLV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR635SLV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB724GRT

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS340HTS at ENCODE; https://www.encodeproject.org/ENCBS340HTS/


title: STARR-seq from A549 (ENCLB794NWE)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB794NWE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC


title: STARR-seq from A549 (ENCLB118YOB)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB118YOB
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS223VDH at ENCODE; https://www.encodeproject.org/ENCBS223VDH/


title: Flow-FISH CRISPR screen from K562 (ENCLB821UVR)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB821UVR
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS255EEA at ENCODE; https://www.encodeproject.org/ENCBS255EEA/


title: DNase-seq from activated B cell (ENCLB702YLB)

description:
https://www.encodeproject.org/experiments/ENCSR320ICS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR320ICS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB702YLB

source_name: Homo sapiens female adult (22 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: adult

value: 22 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS411FQG at ENCODE; https://www.encodeproject.org/ENCBS411FQG/


title: STARR-seq from A549 (ENCLB766HAW)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB766HAW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:RU486; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS556ENL at ENCODE; https://www.encodeproject.org/ENCBS556ENL/


title: Flow-FISH CRISPR screen from K562 (ENCLB933NDT)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB933NDT
size range: 200-210

value: cell line

value: ATCC

value: ENCBS808YOD at ENCODE; https://www.encodeproject.org/ENCBS808YOD/


title: STARR-seq from A549 (ENCLB619EZN)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB619EZN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB679HEO)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB679HEO
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year


title: STARR-seq from A549 (ENCLB832ZNV)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB832ZNV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS983INB at ENCODE; https://www.encodeproject.org/ENCBS983INB/


title: STARR-seq from A549 (ENCLB600GZM)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB600GZM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: ENCBS028BAJ at ENCODE; https://www.encodeproject.org/ENCBS028BAJ/


title: STARR-seq from A549 (ENCLB610CQJ)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB610CQJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS223VDH at ENCODE; https://www.encodeproject.org/ENCBS223VDH/


title: Flow-FISH CRISPR screen from K562 (ENCLB112HNW)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB112HNW
size range: 200-210

value: Jesse Engreitz, Stanford


title: STARR-seq from A549 (ENCLB256NNX)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB256NNX
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB730RKA)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB730RKA
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB649UIN)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB649UIN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB493IJU)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB493IJU
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB748MPK)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB748MPK
size range: 200-210

value: ENCBS255EEA at ENCODE; https://www.encodeproject.org/ENCBS255EEA/


title: STARR-seq from A549 (ENCLB285RAE)

description:
https://www.encodeproject.org/experiments/ENCSR319VAS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR319VAS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB285RAE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male


title: Flow-FISH CRISPR screen from K562 (ENCLB307AKM)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB307AKM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB400BRQ)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB400BRQ
size range: 200-210


title: STARR-seq from A549 (ENCLB362JQM)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB362JQM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM CORT108297 (antagonist) for 4 hours

value: 58 year

value: treatment_term_name:CORT108297; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS214AND at ENCODE; https://www.encodeproject.org/ENCBS214AND/


title: DNase-seq from dendritic cell (ENCLB919CPT)

description:
https://www.encodeproject.org/experiments/ENCSR546QFM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR546QFM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB919CPT

source_name: Homo sapiens male adult (51 years) dendritic primary cell treated with 50 ng/mL granulocyte-macrophage colony-stimulating factor for 4 days, 40 ng/mL Interleukin-4 for 4 days

value: dendritic cell

value: primary cell

value: 51 year

value: Charles Lee

value: AllCells

value: treatment_term_id:UniProtKB:P04141; treatment_term_name:granulocyte-macrophage colony-stimulating factor; treatment_type:protein; duration:4; duration_units:day; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:day;

value: ENCBS423NPO at ENCODE; https://www.encodeproject.org/ENCBS423NPO/


title: STARR-seq from A549 (ENCLB742NER)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB742NER
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: Tim Reddy, Duke

value: ATCC


title: DNase-seq from T-cell (ENCLB234UCX)

description:
https://www.encodeproject.org/experiments/ENCSR634AMY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR634AMY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB234UCX

source_name: Homo sapiens male adult (42 years) T-cell primary cell

value: T-cell

value: adult

value: 42 year

value: John Stamatoyannopoulos, UW

value: ENCBS354FCF at ENCODE; https://www.encodeproject.org/ENCBS354FCF/


title: STARR-seq from A549 (ENCLB383TLK)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB383TLK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: 58 year

value: treatment_term_name:CORT108297; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB401VQC)

description:
https://www.encodeproject.org/experiments/ENCSR634GWM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR634GWM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB401VQC
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS255EEA at ENCODE; https://www.encodeproject.org/ENCBS255EEA/


title: STARR-seq from A549 (ENCLB660CNS)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB660CNS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS440XSP at ENCODE; https://www.encodeproject.org/ENCBS440XSP/


title: STARR-seq from A549 (ENCLB279NLQ)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB279NLQ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line


title: STARR-seq from A549 (ENCLB824VXH)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB824VXH
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke

value: ENCBS160JHL at ENCODE; https://www.encodeproject.org/ENCBS160JHL/


title: STARR-seq from A549 (ENCLB913QBS)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB913QBS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC

value: ENCBS694UXO at ENCODE; https://www.encodeproject.org/ENCBS694UXO/


title: DNase-seq from T-helper 1 cell (ENCLB937YDY)

description:
https://www.encodeproject.org/experiments/ENCSR633ZXD/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR633ZXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB937YDY

source_name: Homo sapiens male adult (30 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: adult

value: 30 year

value: AllCells

value: ENCBS330VQH at ENCODE; https://www.encodeproject.org/ENCBS330VQH/


title: DNase-seq from T-helper 1 cell (ENCLB676NZF)

description:
https://www.encodeproject.org/experiments/ENCSR633ZXD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR633ZXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB676NZF

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS701TJK at ENCODE; https://www.encodeproject.org/ENCBS701TJK/


title: STARR-seq from A549 (ENCLB048JQZ)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB048JQZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: treatment_term_name:CORT108297; treatment_type:chemical; duration:4; duration_units:hour;


title: STARR-seq from A549 (ENCLB319YIS)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB319YIS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS214AND at ENCODE; https://www.encodeproject.org/ENCBS214AND/


title: STARR-seq from A549 (ENCLB659BJK)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB659BJK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line


title: STARR-seq from A549 (ENCLB179HBY)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB179HBY
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke

value: ENCBS440XSP at ENCODE; https://www.encodeproject.org/ENCBS440XSP/


title: DNase-seq from T-helper 1 cell (ENCLB969AEK)

description:
https://www.encodeproject.org/experiments/ENCSR633ZXD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR633ZXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB969AEK

value: ENCBS668FYB at ENCODE; https://www.encodeproject.org/ENCBS668FYB/


title: STARR-seq from A549 (ENCLB939HHZ)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB939HHZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC


title: STARR-seq from A549 (ENCLB393RMO)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB393RMO
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS160JHL at ENCODE; https://www.encodeproject.org/ENCBS160JHL/


title: STARR-seq from A549 (ENCLB565LIZ)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB565LIZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS694UXO at ENCODE; https://www.encodeproject.org/ENCBS694UXO/


title: STARR-seq from A549 (ENCLB810QYD)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB810QYD
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB822KUF)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB822KUF
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS164NKH at ENCODE; https://www.encodeproject.org/ENCBS164NKH/


title: FACS CRISPR screen from WTC11 (ENCLB022QLQ)

description:
https://www.encodeproject.org/experiments/ENCSR542MMN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR542MMN
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR019PDV
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB022QLQ

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS943RZJ at ENCODE; https://www.encodeproject.org/ENCBS943RZJ/


title: DNase-seq from T-helper 1 cell (ENCLB564NNL)

description:
https://www.encodeproject.org/experiments/ENCSR633ZXD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR633ZXD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB564NNL

value: T-helper 1 cell

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS003VXB at ENCODE; https://www.encodeproject.org/ENCBS003VXB/


title: FACS CRISPR screen from WTC11 (ENCLB065DGI)

description:
https://www.encodeproject.org/experiments/ENCSR542MMN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR542MMN
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR019PDV
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB065DGI

value: cell line

value: ENCBS467KKK at ENCODE; https://www.encodeproject.org/ENCBS467KKK/


title: PRO-cap from testis (ENCLB448JSB)

description:
https://www.encodeproject.org/experiments/ENCSR542IVL/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR542IVL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB448JSB

source_name: Homo sapiens male testis tissue

value: testis

value: tissue

value: unknown

value: Haiyuan Yu, Cornell

value: Kyle Orwig

value: ENCBS442JRS at ENCODE; https://www.encodeproject.org/ENCBS442JRS/


title: Flow-FISH CRISPR screen from K562 (ENCLB617ROD)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB617ROD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS960MIZ at ENCODE; https://www.encodeproject.org/ENCBS960MIZ/


title: PRO-cap from testis (ENCLB287XSH)

description:
https://www.encodeproject.org/experiments/ENCSR542IVL/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR542IVL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB287XSH

value: male


title: DNase-seq from immature natural killer cell (ENCLB520NYM)

description:
https://www.encodeproject.org/experiments/ENCSR633MZF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR633MZF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB520NYM

source_name: Homo sapiens female adult (45 years) immature natural killer primary cell treated with 100 ng/mL Interleukin-15 for 1 hour

value: immature natural killer cell

value: primary cell

value: 45 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS591FXO at ENCODE; https://www.encodeproject.org/ENCBS591FXO/


title: STARR-seq from A549 (ENCLB089OTD)

description:
https://www.encodeproject.org/experiments/ENCSR543JLA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR543JLA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB089OTD
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:CORT108297; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS160JHL at ENCODE; https://www.encodeproject.org/ENCBS160JHL/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB747YGW)

description:
https://www.encodeproject.org/experiments/ENCSR537SRE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR537SRE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB747YGW

source_name: Homo sapiens stimulated activated naive CD4-positive, alpha-beta T primary cell

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS839BSM at ENCODE; https://www.encodeproject.org/ENCBS839BSM/


title: proliferation CRISPR screen from WTC11 (ENCLB557RLZ)

description:
https://www.encodeproject.org/experiments/ENCSR536LLM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR536LLM
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB557RLZ

source_name: Homo sapiens WTC11 cell line genetically modified (CRISPRi) using CRISPR, genetically modified (insertion) using CRISPR, genetically modified (insertion) using TALEN inserting M. musculus Neurog2, 0 days post differentiation

value: male

value: adult

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS042JDG at ENCODE; https://www.encodeproject.org/ENCBS042JDG/


title: STARR-seq from A549 (ENCLB084PXL)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB084PXL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM GW870086 (agonist) for 4 hours

value: ATCC

value: treatment_term_name:GW870086; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS041XXB at ENCODE; https://www.encodeproject.org/ENCBS041XXB/


title: proliferation CRISPR screen from WTC11 (ENCLB967EVV)

description:
https://www.encodeproject.org/experiments/ENCSR536LLM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR536LLM
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB967EVV

value: cell line

value: ENCBS214RGJ at ENCODE; https://www.encodeproject.org/ENCBS214RGJ/


title: STARR-seq from A549 (ENCLB703ZSM)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB703ZSM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: ENCBS219UZO at ENCODE; https://www.encodeproject.org/ENCBS219UZO/


title: Flow-FISH CRISPR screen from K562 (ENCLB505ZKF)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB505ZKF
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS164NKH at ENCODE; https://www.encodeproject.org/ENCBS164NKH/


title: Flow-FISH CRISPR screen from K562 (ENCLB681HRT)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB681HRT
size range: 200-210

value: adult


title: STARR-seq from A549 (ENCLB080JZI)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB080JZI
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: ENCBS450UPV at ENCODE; https://www.encodeproject.org/ENCBS450UPV/


title: Flow-FISH CRISPR screen from K562 (ENCLB586YSX)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB586YSX
size range: 200-210


title: STARR-seq from A549 (ENCLB492BUJ)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB492BUJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB956YZT)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB956YZT
size range: 200-210

value: ENCBS960MIZ at ENCODE; https://www.encodeproject.org/ENCBS960MIZ/


title: STARR-seq from A549 (ENCLB173TCQ)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB173TCQ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC


title: STARR-seq from A549 (ENCLB068ZNI)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB068ZNI
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: treatment_term_name:GW870086; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB552BTG)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB552BTG
size range: 200-210


title: STARR-seq from A549 (ENCLB066ASV)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB066ASV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS373YYI at ENCODE; https://www.encodeproject.org/ENCBS373YYI/


title: STARR-seq from A549 (ENCLB192UCL)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB192UCL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ENCBS041XXB at ENCODE; https://www.encodeproject.org/ENCBS041XXB/


title: STARR-seq from A549 (ENCLB881PQC)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB881PQC
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year


title: STARR-seq from A549 (ENCLB304OQN)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB304OQN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke


title: STARR-seq from A549 (ENCLB430PWN)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB430PWN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS219UZO at ENCODE; https://www.encodeproject.org/ENCBS219UZO/


title: Flow-FISH CRISPR screen from K562 (ENCLB654WPH)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB654WPH
size range: 200-210

value: female

value: ENCBS226PPO at ENCODE; https://www.encodeproject.org/ENCBS226PPO/


title: Flow-FISH CRISPR screen from K562 (ENCLB444OYS)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB444OYS
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS837ZDW at ENCODE; https://www.encodeproject.org/ENCBS837ZDW/


title: STARR-seq from A549 (ENCLB677FZJ)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB677FZJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult


title: STARR-seq from A549 (ENCLB979HJU)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB979HJU
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male


title: STARR-seq from A549 (ENCLB129JAF)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB129JAF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB024SUU)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB024SUU
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB324FUY)

description:
https://www.encodeproject.org/experiments/ENCSR632VQO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR632VQO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB324FUY
size range: 200-210

value: ENCBS960MIZ at ENCODE; https://www.encodeproject.org/ENCBS960MIZ/


title: STARR-seq from A549 (ENCLB328NGZ)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB328NGZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC

value: ENCBS450UPV at ENCODE; https://www.encodeproject.org/ENCBS450UPV/


title: Flow-FISH CRISPR screen from K562 (ENCLB009JKZ)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB009JKZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB300CFA)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB300CFA
size range: 200-210


title: PRO-cap from testis (ENCLB179GWY)

description:
https://www.encodeproject.org/experiments/ENCSR305RPP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR305RPP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB179GWY

value: testis

value: tissue

value: unknown

value: Haiyuan Yu, Cornell

value: Kyle Orwig

value: ENCBS517HXS at ENCODE; https://www.encodeproject.org/ENCBS517HXS/


title: PRO-cap from helper T cell (ENCLB942UGC)

description:
https://www.encodeproject.org/experiments/ENCSR528FMA/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.
experiment encode accession: ENCSR528FMA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB942UGC

source_name: Homo sapiens helper T primary cell

value: helper T cell

value: primary cell

value: not collected

value: Remi J. Creusot

value: ENCBS440NFK at ENCODE; https://www.encodeproject.org/ENCBS440NFK/


title: PRO-cap from testis (ENCLB784BDH)

description:
https://www.encodeproject.org/experiments/ENCSR305RPP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Testis.
experiment encode accession: ENCSR305RPP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB784BDH


title: Flow-FISH CRISPR screen from K562 (ENCLB258HVC)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB258HVC
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS226PPO at ENCODE; https://www.encodeproject.org/ENCBS226PPO/


title: DNase-seq from activated B cell (ENCLB570FEM)

description:
https://www.encodeproject.org/experiments/ENCSR527ZIM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR527ZIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB570FEM

source_name: Homo sapiens female adult (41 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: 41 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS137FUO at ENCODE; https://www.encodeproject.org/ENCBS137FUO/


title: PRO-cap from helper T cell (ENCLB618IVF)

description:
https://www.encodeproject.org/experiments/ENCSR528FMA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.
experiment encode accession: ENCSR528FMA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB618IVF

value: helper T cell

value: unknown

value: Haiyuan Yu, Cornell


title: DNase-seq from activated B cell (ENCLB415DDZ)

description:
https://www.encodeproject.org/experiments/ENCSR527ZIM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR527ZIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB415DDZ

value: primary cell

value: ENCBS736UIJ at ENCODE; https://www.encodeproject.org/ENCBS736UIJ/


title: DNase-seq from activated B cell (ENCLB516OSB)

description:
https://www.encodeproject.org/experiments/ENCSR527ZIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527ZIM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB516OSB

value: ENCBS113DBP at ENCODE; https://www.encodeproject.org/ENCBS113DBP/


title: PRO-cap from NALM6 (ENCLB689CTU)

description:
https://www.encodeproject.org/experiments/ENCSR526XOQ/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NALM-6.
experiment encode accession: ENCSR526XOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB689CTU

source_name: Homo sapiens NALM6 cell line

value: cell line

value: male

value: 19 year

value: Russell Ryan

value: ENCBS030MHM at ENCODE; https://www.encodeproject.org/ENCBS030MHM/


title: Flow-FISH CRISPR screen from K562 (ENCLB461TMM)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB461TMM
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS226PPO at ENCODE; https://www.encodeproject.org/ENCBS226PPO/


title: PRO-cap from NALM6 (ENCLB910TQA)

description:
https://www.encodeproject.org/experiments/ENCSR526XOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NALM-6.
experiment encode accession: ENCSR526XOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB910TQA

value: ENCBS997SHK at ENCODE; https://www.encodeproject.org/ENCBS997SHK/


title: PRO-cap from Metastatic Liver Carcinoma in the Adrenal Gland (ENCLB532VXA)

description:
https://www.encodeproject.org/experiments/ENCSR300AAD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic liver cancer to adrenal gland.
experiment encode accession: ENCSR300AAD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB532VXA

source_name: Homo sapiens female adult (30 years) Metastatic Liver Carcinoma in the Adrenal Gland tissue

value: tissue

value: 30 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS663XQQ at ENCODE; https://www.encodeproject.org/ENCBS663XQQ/


title: STARR-seq from A549 (ENCLB979IKZ)

description:
https://www.encodeproject.org/experiments/ENCSR534WIF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR534WIF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB979IKZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:GW870086; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS041XXB at ENCODE; https://www.encodeproject.org/ENCBS041XXB/


title: Flow-FISH CRISPR screen from K562 (ENCLB127AXB)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB127AXB
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS338YAF at ENCODE; https://www.encodeproject.org/ENCBS338YAF/


title: PRO-cap from ureter (ENCLB814TME)

description:
https://www.encodeproject.org/experiments/ENCSR526QVD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ureter.
experiment encode accession: ENCSR526QVD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB814TME

source_name: Homo sapiens female adult (53 years) ureter tissue

value: ureter

value: 53 year

value: Michael Snyder

value: ENCBS635FFZ at ENCODE; https://www.encodeproject.org/ENCBS635FFZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB126KAV)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB126KAV
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB815CGL)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB815CGL
size range: 200-210

value: ENCBS883IDU at ENCODE; https://www.encodeproject.org/ENCBS883IDU/


title: PRO-cap from ureter (ENCLB838VMH)

description:
https://www.encodeproject.org/experiments/ENCSR526QVD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ureter.
experiment encode accession: ENCSR526QVD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB838VMH

value: tissue

value: Haiyuan Yu, Cornell


title: PRO-cap from T-cell (ENCLB885PNX)

description:
https://www.encodeproject.org/experiments/ENCSR296XBI/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.
experiment encode accession: ENCSR296XBI
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB885PNX

source_name: Homo sapiens T-cell primary cell

value: T-cell

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS363NUK at ENCODE; https://www.encodeproject.org/ENCBS363NUK/


title: PRO-cap from T-cell (ENCLB968FPV)

description:
https://www.encodeproject.org/experiments/ENCSR296XBI/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.
experiment encode accession: ENCSR296XBI
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB968FPV


title: Flow-FISH CRISPR screen from K562 (ENCLB230ZQY)

description:
https://www.encodeproject.org/experiments/ENCSR630UAQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR630UAQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB230ZQY
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS226PPO at ENCODE; https://www.encodeproject.org/ENCBS226PPO/


title: DNase-seq from activated T-cell (ENCLB294CBC)

description:
https://www.encodeproject.org/experiments/ENCSR524XMS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524XMS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB294CBC

source_name: Homo sapiens male adult (30 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS845VZM at ENCODE; https://www.encodeproject.org/ENCBS845VZM/


title: DNase-seq from activated T-cell (ENCLB371UTV)

description:
https://www.encodeproject.org/experiments/ENCSR524XMS/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR524XMS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB371UTV

value: primary cell

value: ENCBS066SNL at ENCODE; https://www.encodeproject.org/ENCBS066SNL/