title: DNase-seq from K562 (ENCLB961QNK)

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB961QNK

value: ENCBS839EXS at ENCODE; https://www.encodeproject.org/ENCBS839EXS/


title: DNase-seq from K562 (ENCLB882ZSJ)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB882ZSJ

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: link

value: ENCBS360AVU at ENCODE; https://www.encodeproject.org/ENCBS360AVU/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB416MXM)

description:
https://www.encodeproject.org/experiments/ENCSR213VBE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR213VBE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB416MXM

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: AllCells

value: ENCBS475GGH at ENCODE; https://www.encodeproject.org/ENCBS475GGH/


title: DNase-seq from K562 (ENCLB903BOH)

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB903BOH

value: ENCBS124PLV at ENCODE; https://www.encodeproject.org/ENCBS124PLV/


title: DNase-seq from K562 (ENCLB440MGG)

description:
https://www.encodeproject.org/experiments/ENCSR425QOB/
***************
biological replicate number: 6
technical replicate number: 1
description:
experiment encode accession: ENCSR425QOB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440MGG

value: ENCBS634WXI at ENCODE; https://www.encodeproject.org/ENCBS634WXI/


title: DNase-seq from CD14-positive monocyte (ENCLB301ENG)

description:
https://www.encodeproject.org/experiments/ENCSR213GEE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR213GEE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB301ENG
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2000

source_name: Homo sapiens female CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: unknown

value: Shelly Heimfeld

value: ENCBS824UBF at ENCODE; https://www.encodeproject.org/ENCBS824UBF/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB232HOY)

description:
https://www.encodeproject.org/experiments/ENCSR213CHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR213CHG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB232HOY

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-7 for 1 hour

value: female

value: 34 year

tag: treatments

value: treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS128VMX at ENCODE; https://www.encodeproject.org/ENCBS128VMX/


title: DNase-seq from T-helper 2 cell (ENCLB470NOF)

description:
https://www.encodeproject.org/experiments/ENCSR213QAQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR213QAQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB470NOF

source_name: Homo sapiens male adult (30 years) T-helper 2 primary cell

value: T-helper 2 cell

value: male

value: adult

value: 30 year

value: John Stamatoyannopoulos, UW

value: ENCBS855OOH at ENCODE; https://www.encodeproject.org/ENCBS855OOH/


title: DNase-seq from T-helper 2 cell (ENCLB637KJT)

description:
https://www.encodeproject.org/experiments/ENCSR213QAQ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR213QAQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB637KJT

value: primary cell

value: AllCells

value: ENCBS058JIE at ENCODE; https://www.encodeproject.org/ENCBS058JIE/


title: DNase-seq from K562 (ENCLB309XTJ)

description:
https://www.encodeproject.org/experiments/ENCSR212ZFB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR212ZFB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB309XTJ

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS966DPE at ENCODE; https://www.encodeproject.org/ENCBS966DPE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB189QDA)

description:
https://www.encodeproject.org/experiments/ENCSR424HIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR424HIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB189QDA

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 42 year

value: ENCBS628KVO at ENCODE; https://www.encodeproject.org/ENCBS628KVO/


title: DNase-seq from HUDEP-2 (ENCLB424OZZ)

description:
https://www.encodeproject.org/experiments/ENCSR417MZR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR417MZR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB424OZZ

source_name: Homo sapiens HUDEP-2 cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS418QUK at ENCODE; https://www.encodeproject.org/ENCBS418QUK/


title: Flow-FISH CRISPR screen from K562 (ENCLB605FPD)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB605FPD
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS420JAN at ENCODE; https://www.encodeproject.org/ENCBS420JAN/


title: Flow-FISH CRISPR screen from K562 (ENCLB625ZBE)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB625ZBE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB505HGM)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB505HGM
size range: 200-210

value: ENCBS123YAJ at ENCODE; https://www.encodeproject.org/ENCBS123YAJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB943TRS)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB943TRS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB308AAS)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB308AAS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB446NMT)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB446NMT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB444JNL)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB444JNL
size range: 200-210

value: ENCBS405QUW at ENCODE; https://www.encodeproject.org/ENCBS405QUW/


title: Flow-FISH CRISPR screen from K562 (ENCLB756UHA)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB756UHA
size range: 200-210

value: cell line


title: DNase-seq from immature natural killer cell (ENCLB630ZIZ)

description:
https://www.encodeproject.org/experiments/ENCSR209VCK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209VCK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB630ZIZ

source_name: Homo sapiens female adult (45 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 45 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS271LRZ at ENCODE; https://www.encodeproject.org/ENCBS271LRZ/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB491LSK)

description:
https://www.encodeproject.org/experiments/ENCSR211RMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR211RMM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB491LSK

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS174GPX at ENCODE; https://www.encodeproject.org/ENCBS174GPX/


title: Flow-FISH CRISPR screen from K562 (ENCLB706YJD)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB706YJD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB430LTB)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB430LTB
size range: 200-210

value: cell line

value: ENCBS024LQQ at ENCODE; https://www.encodeproject.org/ENCBS024LQQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB355YXA)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB355YXA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB227MVA)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB227MVA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB237BBS)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB237BBS
size range: 200-210

value: ENCBS405QUW at ENCODE; https://www.encodeproject.org/ENCBS405QUW/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB291KOV)

description:
https://www.encodeproject.org/experiments/ENCSR419WOC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR419WOC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB291KOV

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-15 for 24 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS185YAD at ENCODE; https://www.encodeproject.org/ENCBS185YAD/


title: DNase-seq from T-helper 2 cell (ENCLB020DXF)

description:
https://www.encodeproject.org/experiments/ENCSR213QAQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR213QAQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB020DXF

value: T-helper 2 cell

value: male

value: 30 year

value: AllCells

value: ENCBS907MVQ at ENCODE; https://www.encodeproject.org/ENCBS907MVQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB034DSA)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB034DSA
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS420JAN at ENCODE; https://www.encodeproject.org/ENCBS420JAN/


title: Flow-FISH CRISPR screen from K562 (ENCLB755EWU)

description:
https://www.encodeproject.org/experiments/ENCSR417AIR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR417AIR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB755EWU
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS123YAJ at ENCODE; https://www.encodeproject.org/ENCBS123YAJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB819SNY)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB819SNY
size range: 200-210

value: ENCBS238ZRB at ENCODE; https://www.encodeproject.org/ENCBS238ZRB/


title: Flow-FISH CRISPR screen from K562 (ENCLB328LEF)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB328LEF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB806QFP)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB806QFP
size range: 200-210

value: ENCBS241BAP at ENCODE; https://www.encodeproject.org/ENCBS241BAP/


title: DNase-seq from HUDEP-2 (ENCLB597TRQ)

description:
https://www.encodeproject.org/experiments/ENCSR413EBD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR413EBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB597TRQ

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS176XDO at ENCODE; https://www.encodeproject.org/ENCBS176XDO/


title: Flow-FISH CRISPR screen from K562 (ENCLB626YZC)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB626YZC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB280XWH)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB280XWH
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB642SNP)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB642SNP
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB353EVW)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB353EVW
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB352CLT)

description:
https://www.encodeproject.org/experiments/ENCSR411LLP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR411LLP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB352CLT
size range: 200-210

value: ENCBS948KZP at ENCODE; https://www.encodeproject.org/ENCBS948KZP/


title: Flow-FISH CRISPR screen from K562 (ENCLB813LIZ)

description:
https://www.encodeproject.org/experiments/ENCSR209UBX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR209UBX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB813LIZ
size range: 200-210

value: ENCBS024LQQ at ENCODE; https://www.encodeproject.org/ENCBS024LQQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB164KBT)

description:
https://www.encodeproject.org/experiments/ENCSR412ORQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR412ORQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB164KBT
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB113JYV)

description:
https://www.encodeproject.org/experiments/ENCSR411LLP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR411LLP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB113JYV
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB279QLJ)

description:
https://www.encodeproject.org/experiments/ENCSR411LLP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR411LLP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB279QLJ
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB148EMU)

description:
https://www.encodeproject.org/experiments/ENCSR411LLP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR411LLP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB148EMU
size range: 200-210

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB681PLV)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB681PLV
size range: 200-210

value: ENCBS841SPW at ENCODE; https://www.encodeproject.org/ENCBS841SPW/


title: Flow-FISH CRISPR screen from K562 (ENCLB900GKC)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB900GKC
size range: 200-210

value: cell line

value: ENCBS007QNK at ENCODE; https://www.encodeproject.org/ENCBS007QNK/


title: Flow-FISH CRISPR screen from K562 (ENCLB673TIS)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB673TIS
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB896CXG)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB896CXG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB722MHE)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB722MHE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB101UDG)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB101UDG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB042QKG)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB042QKG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB202LOY)

description:
https://www.encodeproject.org/experiments/ENCSR410HCJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR410HCJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB202LOY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB638CKM)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB638CKM
size range: 200-210

value: ENCBS312TRM at ENCODE; https://www.encodeproject.org/ENCBS312TRM/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB770HJT)

description:
https://www.encodeproject.org/experiments/ENCSR410FVX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410FVX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB770HJT

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS938CLE at ENCODE; https://www.encodeproject.org/ENCBS938CLE/


title: Flow-FISH CRISPR screen from K562 (ENCLB587VOI)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB587VOI
size range: 200-210

value: ENCBS423ABZ at ENCODE; https://www.encodeproject.org/ENCBS423ABZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB990PXB)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB990PXB
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB012IUQ)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB012IUQ
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB462JGG)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB462JGG
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB817GDX)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB817GDX
size range: 200-210

value: 53 year


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB778DKL)

description:
https://www.encodeproject.org/experiments/ENCSR209HFQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR209HFQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB778DKL

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: John Stamatoyannopoulos, UW

value: ENCBS836WSA at ENCODE; https://www.encodeproject.org/ENCBS836WSA/


title: Flow-FISH CRISPR screen from K562 (ENCLB932MRZ)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB932MRZ
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB389AEW)

description:
https://www.encodeproject.org/experiments/ENCSR209FEJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR209FEJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB389AEW
size range: 200-210

value: ATCC

value: ENCBS083OIL at ENCODE; https://www.encodeproject.org/ENCBS083OIL/


title: Flow-FISH CRISPR screen from K562 (ENCLB011GQY)

description:
https://www.encodeproject.org/experiments/ENCSR209NWZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR209NWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB011GQY
size range: 200-210

value: ENCBS312TRM at ENCODE; https://www.encodeproject.org/ENCBS312TRM/


title: Flow-FISH CRISPR screen from K562 (ENCLB657EVW)

description:
https://www.encodeproject.org/experiments/ENCSR209FEJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209FEJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB657EVW
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB985HNW)

description:
https://www.encodeproject.org/experiments/ENCSR209HFQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209HFQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB985HNW

value: primary cell

value: male

value: 38 year

value: ENCBS220JJX at ENCODE; https://www.encodeproject.org/ENCBS220JJX/


title: Flow-FISH CRISPR screen from K562 (ENCLB882YJN)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB882YJN
size range: 200-210

value: ENCBS389EXR at ENCODE; https://www.encodeproject.org/ENCBS389EXR/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB648MXB)

description:
https://www.encodeproject.org/experiments/ENCSR407IGM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR407IGM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB648MXB

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS557PQW at ENCODE; https://www.encodeproject.org/ENCBS557PQW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB117YLF)

description:
https://www.encodeproject.org/experiments/ENCSR407IGM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR407IGM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB117YLF

value: adult

value: ENCBS371HEU at ENCODE; https://www.encodeproject.org/ENCBS371HEU/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB103EFY)

description:
https://www.encodeproject.org/experiments/ENCSR404FTK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR404FTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB103EFY

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: ENCBS895GSG at ENCODE; https://www.encodeproject.org/ENCBS895GSG/


title: Flow-FISH CRISPR screen from K562 (ENCLB650EDL)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB650EDL
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB630SJJ)

description:
https://www.encodeproject.org/experiments/ENCSR209FEJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR209FEJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB630SJJ
size range: 200-210

value: ENCBS083OIL at ENCODE; https://www.encodeproject.org/ENCBS083OIL/


title: Flow-FISH CRISPR screen from K562 (ENCLB707ORP)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB707ORP
size range: 200-210

value: ENCBS389EXR at ENCODE; https://www.encodeproject.org/ENCBS389EXR/


title: Flow-FISH CRISPR screen from K562 (ENCLB154CJP)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB154CJP
size range: 200-210

value: ENCBS604SCL at ENCODE; https://www.encodeproject.org/ENCBS604SCL/


title: Flow-FISH CRISPR screen from K562 (ENCLB494IVT)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB494IVT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB908AXW)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB908AXW
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB553JZZ)

description:
https://www.encodeproject.org/experiments/ENCSR410FVX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR410FVX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB553JZZ

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS260OGW at ENCODE; https://www.encodeproject.org/ENCBS260OGW/


title: Flow-FISH CRISPR screen from K562 (ENCLB349UNO)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB349UNO
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB880SAE)

description:
https://www.encodeproject.org/experiments/ENCSR209FEJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR209FEJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB880SAE
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB386BQA)

description:
https://www.encodeproject.org/experiments/ENCSR208ALL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208ALL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB386BQA

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS235KLP at ENCODE; https://www.encodeproject.org/ENCBS235KLP/


title: Flow-FISH CRISPR screen from K562 (ENCLB592SMC)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB592SMC
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS829MCW at ENCODE; https://www.encodeproject.org/ENCBS829MCW/


title: Flow-FISH CRISPR screen from K562 (ENCLB355DOM)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB355DOM
size range: 200-210

value: ENCBS272KBY at ENCODE; https://www.encodeproject.org/ENCBS272KBY/


title: Flow-FISH CRISPR screen from K562 (ENCLB556AZZ)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB556AZZ
size range: 200-210

value: ENCBS970IGX at ENCODE; https://www.encodeproject.org/ENCBS970IGX/


title: Flow-FISH CRISPR screen from K562 (ENCLB580VWC)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB580VWC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB902CXI)

description:
https://www.encodeproject.org/experiments/ENCSR208BAL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR208BAL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB902CXI
size range: 200-210

value: ENCBS604SCL at ENCODE; https://www.encodeproject.org/ENCBS604SCL/


title: DNase-seq from suppressor macrophage (ENCLB949AYC)

description:
https://www.encodeproject.org/experiments/ENCSR206KER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR206KER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB949AYC

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: male

value: 24 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS968JGK at ENCODE; https://www.encodeproject.org/ENCBS968JGK/


title: Flow-FISH CRISPR screen from K562 (ENCLB722EPO)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB722EPO
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB065BKO)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB065BKO
size range: 200-210

value: cell line

value: ENCBS538YWJ at ENCODE; https://www.encodeproject.org/ENCBS538YWJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB373ROM)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB373ROM
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB854OBZ)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB854OBZ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS712MTP at ENCODE; https://www.encodeproject.org/ENCBS712MTP/


title: Flow-FISH CRISPR screen from K562 (ENCLB070YKF)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB070YKF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB668NTL)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB668NTL
size range: 200-210

value: ENCBS272KBY at ENCODE; https://www.encodeproject.org/ENCBS272KBY/


title: Flow-FISH CRISPR screen from K562 (ENCLB263IKW)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB263IKW
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB495EWY)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB495EWY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB360UQT)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB360UQT
size range: 200-210

value: ENCBS829MCW at ENCODE; https://www.encodeproject.org/ENCBS829MCW/


title: Flow-FISH CRISPR screen from K562 (ENCLB291OIG)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB291OIG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB879RGM)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB879RGM
size range: 200-210

value: ENCBS970IGX at ENCODE; https://www.encodeproject.org/ENCBS970IGX/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB707JPT)

description:
https://www.encodeproject.org/experiments/ENCSR203NQT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR203NQT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB707JPT

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS717SPS at ENCODE; https://www.encodeproject.org/ENCBS717SPS/


title: Flow-FISH CRISPR screen from K562 (ENCLB091CTP)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091CTP
size range: 200-210

value: female

value: adult

value: ENCBS860ZGJ at ENCODE; https://www.encodeproject.org/ENCBS860ZGJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB894BDQ)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB894BDQ
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB569BSE)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB569BSE
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS178TIU at ENCODE; https://www.encodeproject.org/ENCBS178TIU/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB488QRF)

description:
https://www.encodeproject.org/experiments/ENCSR203NQT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR203NQT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB488QRF

value: male

value: ENCBS942UHU at ENCODE; https://www.encodeproject.org/ENCBS942UHU/


title: Flow-FISH CRISPR screen from K562 (ENCLB023TYG)

description:
https://www.encodeproject.org/experiments/ENCSR205YWZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR205YWZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB023TYG
size range: 200-210

value: ATCC

value: ENCBS538YWJ at ENCODE; https://www.encodeproject.org/ENCBS538YWJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB050VXU)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB050VXU
size range: 200-210

value: ENCBS829MCW at ENCODE; https://www.encodeproject.org/ENCBS829MCW/


title: Flow-FISH CRISPR screen from K562 (ENCLB465WZU)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB465WZU
size range: 200-210

value: ENCBS177HBG at ENCODE; https://www.encodeproject.org/ENCBS177HBG/


title: Flow-FISH CRISPR screen from K562 (ENCLB241MTH)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB241MTH
size range: 200-210

value: ENCBS372PYE at ENCODE; https://www.encodeproject.org/ENCBS372PYE/


title: Flow-FISH CRISPR screen from K562 (ENCLB904UYD)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB904UYD
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB348NEL)

description:
https://www.encodeproject.org/experiments/ENCSR203NQT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR203NQT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB348NEL

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS602FHQ at ENCODE; https://www.encodeproject.org/ENCBS602FHQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB784PCB)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB784PCB
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS040GTU at ENCODE; https://www.encodeproject.org/ENCBS040GTU/


title: Flow-FISH CRISPR screen from K562 (ENCLB955HVC)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB955HVC
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS178TIU at ENCODE; https://www.encodeproject.org/ENCBS178TIU/


title: Flow-FISH CRISPR screen from K562 (ENCLB111YLU)

description:
https://www.encodeproject.org/experiments/ENCSR203XLZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR203XLZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB111YLU
size range: 200-210

value: ATCC

value: ENCBS860ZGJ at ENCODE; https://www.encodeproject.org/ENCBS860ZGJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB076ZIW)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB076ZIW
size range: 200-210

value: ENCBS177HBG at ENCODE; https://www.encodeproject.org/ENCBS177HBG/


title: Flow-FISH CRISPR screen from K562 (ENCLB467CTB)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB467CTB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB093HTK)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB093HTK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB349QGL)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB349QGL
size range: 200-210

value: ENCBS372PYE at ENCODE; https://www.encodeproject.org/ENCBS372PYE/


title: Flow-FISH CRISPR screen from K562 (ENCLB064DYP)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB064DYP
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB795POP)

description:
https://www.encodeproject.org/experiments/ENCSR403PAE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR403PAE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB795POP
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB809GRV)

description:
https://www.encodeproject.org/experiments/ENCSR402WYE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR402WYE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB809GRV

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: ENCBS240GIC at ENCODE; https://www.encodeproject.org/ENCBS240GIC/


title: Flow-FISH CRISPR screen from K562 (ENCLB571KEV)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB571KEV
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB244HXG)

description:
https://www.encodeproject.org/experiments/ENCSR403LMA/
***************
biological replicate number: 1
technical replicate number: 1
description: Tiling, dCas9-KRAB/CRISPRi proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR403LMA
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB244HXG

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/efd73756-33ac-41e4-839d-949c78bbc8f6/@@download/attachment/greenleaf_gata1_myb_zmynd8_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS508CKO at ENCODE; https://www.encodeproject.org/ENCBS508CKO/


title: Flow-FISH CRISPR screen from K562 (ENCLB638XJF)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB638XJF
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from BJAB (ENCLB283OSF)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB283OSF
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS982NGZ at ENCODE; https://www.encodeproject.org/ENCBS982NGZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB736SCM)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB736SCM
size range: 200-210

value: ATCC

value: ENCBS420GPZ at ENCODE; https://www.encodeproject.org/ENCBS420GPZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB337VIZ)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB337VIZ
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB490FPM)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB490FPM
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB612QIL)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB612QIL
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB596COO)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB596COO
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB916SBF)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB916SBF
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB965IRY)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB965IRY
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS975ZPB at ENCODE; https://www.encodeproject.org/ENCBS975ZPB/


title: Flow-FISH CRISPR screen from BJAB (ENCLB917QHV)

description:
https://www.encodeproject.org/experiments/ENCSR400ONN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR400ONN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB917QHV
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB673MZI)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB673MZI
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB747LOX)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB747LOX
size range: 200-210

value: ENCBS113DVU at ENCODE; https://www.encodeproject.org/ENCBS113DVU/


title: Flow-FISH CRISPR screen from BJAB (ENCLB413VOK)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB413VOK
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB566LSD)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB566LSD
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB671GTQ)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB671GTQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB558QCI)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB558QCI
size range: 200-210

value: 53 year

value: ENCBS040GTU at ENCODE; https://www.encodeproject.org/ENCBS040GTU/


title: Flow-FISH CRISPR screen from K562 (ENCLB603MDG)

description:
https://www.encodeproject.org/experiments/ENCSR403KKH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR403KKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB603MDG
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB025OBJ)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB025OBJ
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB298GWL)

description:
https://www.encodeproject.org/experiments/ENCSR992SOX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR992SOX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB298GWL

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS564HIY at ENCODE; https://www.encodeproject.org/ENCBS564HIY/


title: Flow-FISH CRISPR screen from K562 (ENCLB106QEM)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB106QEM
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS476NXK at ENCODE; https://www.encodeproject.org/ENCBS476NXK/


title: Flow-FISH CRISPR screen from BJAB (ENCLB366PYS)

description:
https://www.encodeproject.org/experiments/ENCSR203KCP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR203KCP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB366PYS
size range: 200-210

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB700OFW)

description:
https://www.encodeproject.org/experiments/ENCSR992GOJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR992GOJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB700OFW

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours

value: primary cell

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS714LCV at ENCODE; https://www.encodeproject.org/ENCBS714LCV/


title: Flow-FISH CRISPR screen from K562 (ENCLB001SUV)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB001SUV
size range: 200-210

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB831WSD)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB831WSD
size range: 200-210

value: ENCBS531ABC at ENCODE; https://www.encodeproject.org/ENCBS531ABC/


title: DNase-seq from suppressor macrophage (ENCLB432NRJ)

description:
https://www.encodeproject.org/experiments/ENCSR994OJO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR994OJO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB432NRJ

value: suppressor macrophage

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS713HZT at ENCODE; https://www.encodeproject.org/ENCBS713HZT/


title: Flow-FISH CRISPR screen from K562 (ENCLB014YTR)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB014YTR
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS476NXK at ENCODE; https://www.encodeproject.org/ENCBS476NXK/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB871UVE)

description:
https://www.encodeproject.org/experiments/ENCSR992GOJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR992GOJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB871UVE

value: primary cell

value: 38 year

value: AllCells

value: ENCBS688QMK at ENCODE; https://www.encodeproject.org/ENCBS688QMK/


title: Flow-FISH CRISPR screen from K562 (ENCLB518KVS)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB518KVS
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB347YYN)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB347YYN
size range: 200-210

value: ENCBS531ABC at ENCODE; https://www.encodeproject.org/ENCBS531ABC/


title: Flow-FISH CRISPR screen from K562 (ENCLB535FRB)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB535FRB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB109MFU)

description:
https://www.encodeproject.org/experiments/ENCSR991RLW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR991RLW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB109MFU
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB638SRW)

description:
https://www.encodeproject.org/experiments/ENCSR991AXZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR991AXZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB638SRW

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS917RPE at ENCODE; https://www.encodeproject.org/ENCBS917RPE/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB631CYW)

description:
https://www.encodeproject.org/experiments/ENCSR990EYX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR990EYX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB631CYW

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS908DJM at ENCODE; https://www.encodeproject.org/ENCBS908DJM/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB604GDZ)

description:
https://www.encodeproject.org/experiments/ENCSR990EYX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR990EYX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB604GDZ

value: female

value: adult

value: ENCBS266WVE at ENCODE; https://www.encodeproject.org/ENCBS266WVE/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB593RDQ)

description:
https://www.encodeproject.org/experiments/ENCSR988EYC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR988EYC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB593RDQ

source_name: Homo sapiens male adult (42 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS863DWN at ENCODE; https://www.encodeproject.org/ENCBS863DWN/


title: DNase-seq from K562 (ENCLB366KBX)

description:
https://www.encodeproject.org/experiments/ENCSR986KCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR986KCO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB366KBX

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS238OMR at ENCODE; https://www.encodeproject.org/ENCBS238OMR/


title: Flow-FISH CRISPR screen from K562 (ENCLB945ALO)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB945ALO
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS196ITT at ENCODE; https://www.encodeproject.org/ENCBS196ITT/


title: Flow-FISH CRISPR screen from K562 (ENCLB534PFC)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB534PFC
size range: 200-210

value: ENCBS808NPX at ENCODE; https://www.encodeproject.org/ENCBS808NPX/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB802NXI)

description:
https://www.encodeproject.org/experiments/ENCSR985PID/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR985PID
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB802NXI

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS347QBX at ENCODE; https://www.encodeproject.org/ENCBS347QBX/


title: Flow-FISH CRISPR screen from K562 (ENCLB795RCE)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB795RCE
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB254NKI)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB254NKI
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB071XVF)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB071XVF
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB461NAE)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB461NAE
size range: 200-210

value: 53 year


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB940GNY)

description:
https://www.encodeproject.org/experiments/ENCSR985FKG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR985FKG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB940GNY

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS910XIJ at ENCODE; https://www.encodeproject.org/ENCBS910XIJ/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB596FIC)

description:
https://www.encodeproject.org/experiments/ENCSR985FKG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR985FKG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB596FIC

value: ENCBS532KKE at ENCODE; https://www.encodeproject.org/ENCBS532KKE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB585RNB)

description:
https://www.encodeproject.org/experiments/ENCSR984TLG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984TLG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB585RNB

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 37 year

value: Shelly Heimfeld

value: ENCBS363REC at ENCODE; https://www.encodeproject.org/ENCBS363REC/


title: Flow-FISH CRISPR screen from K562 (ENCLB010GNM)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB010GNM
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS808NPX at ENCODE; https://www.encodeproject.org/ENCBS808NPX/


title: Flow-FISH CRISPR screen from K562 (ENCLB641OHX)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB641OHX
size range: 200-210

value: female

value: ENCBS064TDS at ENCODE; https://www.encodeproject.org/ENCBS064TDS/


title: Flow-FISH CRISPR screen from K562 (ENCLB549JSZ)

description:
https://www.encodeproject.org/experiments/ENCSR985KPT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR985KPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB549JSZ
size range: 200-210

value: cell line

value: adult

value: ENCBS196ITT at ENCODE; https://www.encodeproject.org/ENCBS196ITT/


title: Flow-FISH CRISPR screen from K562 (ENCLB538AIO)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB538AIO
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS244ZVF at ENCODE; https://www.encodeproject.org/ENCBS244ZVF/


title: proliferation CRISPR screen from DU 145 (ENCLB858KDA)

description:
https://www.encodeproject.org/experiments/ENCSR984PEG/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR984PEG
assay title: proliferation CRISPR screen
possible controls: ENCSR193FCX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB858KDA
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens DU 145 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: Prostate carcinoma

value: 69 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS096EHW at ENCODE; https://www.encodeproject.org/ENCBS096EHW/


title: proliferation CRISPR screen from DU 145 (ENCLB350CXZ)

description:
https://www.encodeproject.org/experiments/ENCSR984PEG/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR984PEG
assay title: proliferation CRISPR screen
possible controls: ENCSR193FCX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB350CXZ
size range: 710-720

value: ENCBS900PQX at ENCODE; https://www.encodeproject.org/ENCBS900PQX/


title: Flow-FISH CRISPR screen from K562 (ENCLB036GWO)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB036GWO
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB239MDG)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB239MDG
size range: 200-210

value: female


title: DNase-seq from immature natural killer cell (ENCLB395LXD)

description:
https://www.encodeproject.org/experiments/ENCSR987TNB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR987TNB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB395LXD

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell treated with 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS980YAA at ENCODE; https://www.encodeproject.org/ENCBS980YAA/


title: Flow-FISH CRISPR screen from K562 (ENCLB880WUW)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB880WUW
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS064TDS at ENCODE; https://www.encodeproject.org/ENCBS064TDS/


title: Flow-FISH CRISPR screen from K562 (ENCLB956RFI)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB956RFI
size range: 200-210

value: ENCBS244ZVF at ENCODE; https://www.encodeproject.org/ENCBS244ZVF/


title: Flow-FISH CRISPR screen from K562 (ENCLB745JKA)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB745JKA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB522NUL)

description:
https://www.encodeproject.org/experiments/ENCSR983XJL/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR983XJL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB522NUL
size range: 200-210


title: STARR-seq from SH-SY5Y (ENCLB706SNA)

description:
https://www.encodeproject.org/experiments/ENCSR983SZZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR983SZZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR316NSE
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB706SNA
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens SH-SY5Y cell line genetically modified (episome) using transient transfection

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

tag: passage number

value: Kevin White, UChicago

value: ENCBS952HXD at ENCODE; https://www.encodeproject.org/ENCBS952HXD/