title: Flow-FISH CRISPR screen from K562 (ENCLB471PYW)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB471PYW
size range: 200-210


title: DNase-seq from K562 (ENCLB619EIG)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 41
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB619EIG

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: link

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: DNase-seq from K562 (ENCLB266QWV)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB266QWV

value: ENCBS034JTF at ENCODE; https://www.encodeproject.org/ENCBS034JTF/


title: DNase-seq from K562 (ENCLB982IIL)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 40
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB982IIL


title: Flow-FISH CRISPR screen from K562 (ENCLB722WHA)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB722WHA
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ENCBS688YUN at ENCODE; https://www.encodeproject.org/ENCBS688YUN/


title: Flow-FISH CRISPR screen from K562 (ENCLB653NTT)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB653NTT
size range: 200-210

value: ENCBS273JQY at ENCODE; https://www.encodeproject.org/ENCBS273JQY/


title: DNase-seq from K562 (ENCLB472DCM)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 24
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB472DCM


title: Flow-FISH CRISPR screen from K562 (ENCLB620EVD)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB620EVD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB778FJE)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB778FJE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB000JIO)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB000JIO
size range: 200-210

value: ENCBS653GGV at ENCODE; https://www.encodeproject.org/ENCBS653GGV/


title: Flow-FISH CRISPR screen from K562 (ENCLB831JNX)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB831JNX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB356UDU)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB356UDU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB284HSY)

description:
https://www.encodeproject.org/experiments/ENCSR657SHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657SHO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB284HSY
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB939CCS)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB939CCS
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: BJAB

value: child

value: 5 year

tag: treatments

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS987NMM at ENCODE; https://www.encodeproject.org/ENCBS987NMM/


title: Flow-FISH CRISPR screen from BJAB (ENCLB934YCU)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB934YCU
size range: 200-210

value: cell line

value: female


title: Flow-FISH CRISPR screen from BJAB (ENCLB589REW)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB589REW
size range: 200-210

value: ENCBS560ZMS at ENCODE; https://www.encodeproject.org/ENCBS560ZMS/


title: Flow-FISH CRISPR screen from BJAB (ENCLB166BVF)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB166BVF
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB951HHG)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB951HHG
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB042EXB)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB042EXB
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB731APS)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB731APS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB071MCF)

description:
https://www.encodeproject.org/experiments/ENCSR657MXN/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR657MXN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB071MCF
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS850QJH at ENCODE; https://www.encodeproject.org/ENCBS850QJH/


title: Flow-FISH CRISPR screen from K562 (ENCLB676CFB)

description:
https://www.encodeproject.org/experiments/ENCSR657MXN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR657MXN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB676CFB
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB027NHE)

description:
https://www.encodeproject.org/experiments/ENCSR657MXN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657MXN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB027NHE
size range: 200-210

value: Jesse Engreitz, Stanford


title: STARR-seq from K562 (ENCLB328NEH)

description:
https://www.encodeproject.org/experiments/ENCSR585AGE/
***************
biological replicate number: 3
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR585AGE
assay title: STARR-seq
possible controls: ENCSR036YOP
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB328NEH
fragmentation methods: none
size range: 250-650

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

tag: passage number

value: Haiyuan Yu, Cornell

value: ENCBS575ATB at ENCODE; https://www.encodeproject.org/ENCBS575ATB/


title: Flow-FISH CRISPR screen from K562 (ENCLB387ICW)

description:
https://www.encodeproject.org/experiments/ENCSR657MXN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR657MXN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB387ICW
size range: 200-210


title: DNase-seq from psoas muscle (ENCLB231ITT)

description:
https://www.encodeproject.org/experiments/ENCSR657QWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657QWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB231ITT

source_name: Homo sapiens female adult (47 years) psoas muscle tissue, preserved by flash-freezing

value: psoas muscle

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS936TVH at ENCODE; https://www.encodeproject.org/ENCBS936TVH/


title: Flow-FISH CRISPR screen from K562 (ENCLB322VYM)

description:
https://www.encodeproject.org/experiments/ENCSR655OXC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR655OXC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB322VYM
size range: 200-210

value: cell line

value: female

value: ENCBS123UDY at ENCODE; https://www.encodeproject.org/ENCBS123UDY/


title: Flow-FISH CRISPR screen from K562 (ENCLB973UQN)

description:
https://www.encodeproject.org/experiments/ENCSR655OXC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR655OXC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB973UQN
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: STARR-seq from K562 (ENCLB749YTA)

description:
https://www.encodeproject.org/experiments/ENCSR585AGE/
***************
biological replicate number: 2
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR585AGE
assay title: STARR-seq
possible controls: ENCSR036YOP
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB749YTA
fragmentation methods: none
size range: 250-650

value: 53 year

value: ENCBS623SPP at ENCODE; https://www.encodeproject.org/ENCBS623SPP/


title: Flow-FISH CRISPR screen from K562 (ENCLB936MQB)

description:
https://www.encodeproject.org/experiments/ENCSR592ONV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR592ONV
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB936MQB

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS059EJR at ENCODE; https://www.encodeproject.org/ENCBS059EJR/


title: Flow-FISH CRISPR screen from K562 (ENCLB080SIN)

description:
https://www.encodeproject.org/experiments/ENCSR655OXC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR655OXC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB080SIN
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from BJAB (ENCLB015LSM)

description:
https://www.encodeproject.org/experiments/ENCSR657SBV/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR657SBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB015LSM
size range: 200-210

value: BJAB

value: child

value: 5 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS560ZMS at ENCODE; https://www.encodeproject.org/ENCBS560ZMS/


title: STARR-seq from K562 (ENCLB333PBW)

description:
https://www.encodeproject.org/experiments/ENCSR585AGE/
***************
biological replicate number: 1
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR585AGE
assay title: STARR-seq
possible controls: ENCSR036YOP
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB333PBW
fragmentation methods: none
size range: 250-650

value: cell line

value: Haiyuan Yu, Cornell

value: ENCBS601BEQ at ENCODE; https://www.encodeproject.org/ENCBS601BEQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB446JFL)

description:
https://www.encodeproject.org/experiments/ENCSR531LPK/
***************
biological replicate number: 2
technical replicate number: 1
description: GATA1
experiment encode accession: ENCSR531LPK
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB446JFL

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS232ZHJ at ENCODE; https://www.encodeproject.org/ENCBS232ZHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB032NLC)

description:
https://www.encodeproject.org/experiments/ENCSR558KQP/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS1
experiment encode accession: ENCSR558KQP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB032NLC

value: adult

value: 53 year

value: ENCBS893ZPD at ENCODE; https://www.encodeproject.org/ENCBS893ZPD/


title: DNase-seq from HUDEP-2 (ENCLB689IDU)

description:
https://www.encodeproject.org/experiments/ENCSR652TXP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652TXP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB689IDU

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS222IJC at ENCODE; https://www.encodeproject.org/ENCBS222IJC/


title: Flow-FISH CRISPR screen from K562 (ENCLB868ESQ)

description:
https://www.encodeproject.org/experiments/ENCSR655OXC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR655OXC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB868ESQ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS123UDY at ENCODE; https://www.encodeproject.org/ENCBS123UDY/


title: DNase-seq from T-helper 1 cell (ENCLB357KGQ)

description:
https://www.encodeproject.org/experiments/ENCSR654RJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR654RJL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB357KGQ

source_name: Homo sapiens male adult (38 years) T-helper 1 primary cell

value: T-helper 1 cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS018COX at ENCODE; https://www.encodeproject.org/ENCBS018COX/


title: Flow-FISH CRISPR screen from K562 (ENCLB803COR)

description:
https://www.encodeproject.org/experiments/ENCSR531LPK/
***************
biological replicate number: 1
technical replicate number: 1
description: GATA1
experiment encode accession: ENCSR531LPK
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB803COR

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS431XKT at ENCODE; https://www.encodeproject.org/ENCBS431XKT/


title: Flow-FISH CRISPR screen from K562 (ENCLB255FMR)

description:
https://www.encodeproject.org/experiments/ENCSR651CKH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR651CKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB255FMR
size range: 200-210

value: adult

value: 53 year

value: ENCBS100NYM at ENCODE; https://www.encodeproject.org/ENCBS100NYM/


title: Flow-FISH CRISPR screen from K562 (ENCLB020SVA)

description:
https://www.encodeproject.org/experiments/ENCSR280AOO/
***************
biological replicate number: 2
technical replicate number: 1
description: GATA1
experiment encode accession: ENCSR280AOO
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB020SVA

value: ENCBS232ZHJ at ENCODE; https://www.encodeproject.org/ENCBS232ZHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB068LLZ)

description:
https://www.encodeproject.org/experiments/ENCSR651CKH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR651CKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB068LLZ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB408YIN)

description:
https://www.encodeproject.org/experiments/ENCSR651CKH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR651CKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB408YIN
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB037ZOA)

description:
https://www.encodeproject.org/experiments/ENCSR280AOO/
***************
biological replicate number: 1
technical replicate number: 1
description: GATA1
experiment encode accession: ENCSR280AOO
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB037ZOA


title: Flow-FISH CRISPR screen from K562 (ENCLB997PFG)

description:
https://www.encodeproject.org/experiments/ENCSR558KQP/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS1
experiment encode accession: ENCSR558KQP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB997PFG

value: ENCBS505MJU at ENCODE; https://www.encodeproject.org/ENCBS505MJU/


title: Flow-FISH CRISPR screen from K562 (ENCLB603ZDV)

description:
https://www.encodeproject.org/experiments/ENCSR491ABR/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS3
experiment encode accession: ENCSR491ABR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB603ZDV

value: ENCBS457YJS at ENCODE; https://www.encodeproject.org/ENCBS457YJS/


title: Flow-FISH CRISPR screen from K562 (ENCLB141WPY)

description:
https://www.encodeproject.org/experiments/ENCSR491ABR/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS3
experiment encode accession: ENCSR491ABR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB141WPY

value: ENCBS886LMR at ENCODE; https://www.encodeproject.org/ENCBS886LMR/


title: STARR-seq from glutamatergic neuron (ENCLB770DUF)

description:
https://www.encodeproject.org/experiments/ENCSR258QGF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR258QGF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB770DUF
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (episome) using transient transfection, genetically modified (insertion) using TALEN inserting M. musculus Neurog2, 7 days post differentiation

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: 30 year

value: Kevin White, UChicago

value: Yin Shen

value: ENCBS624GSV at ENCODE; https://www.encodeproject.org/ENCBS624GSV/


title: STARR-seq from glutamatergic neuron (ENCLB910ZUZ)

description:
https://www.encodeproject.org/experiments/ENCSR258QGF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR258QGF
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB910ZUZ
fragmentation methods: shearing (generic)
size range: 200-600

value: ENCBS555ALW at ENCODE; https://www.encodeproject.org/ENCBS555ALW/


title: Flow-FISH CRISPR screen from K562 (ENCLB107MIM)

description:
https://www.encodeproject.org/experiments/ENCSR476KHP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR476KHP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB107MIM

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS981OMN at ENCODE; https://www.encodeproject.org/ENCBS981OMN/


title: STARR-seq from pancreas (ENCLB932DGY)

description:
https://www.encodeproject.org/experiments/ENCSR230PPM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR230PPM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR208QSB
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB932DGY
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens with pancreatic ductal adenocarcinoma; pancreas organoid genetically modified (episome) using transient transfection

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: 63 year

value: Kevin White

value: ENCBS906VUP at ENCODE; https://www.encodeproject.org/ENCBS906VUP/


title: DNase-seq from T-helper 1 cell (ENCLB940NHB)

description:
https://www.encodeproject.org/experiments/ENCSR650QOL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR650QOL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB940NHB

source_name: Homo sapiens female adult (33 years) T-helper 1 primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: T-helper 1 cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS132RAI at ENCODE; https://www.encodeproject.org/ENCBS132RAI/


title: Flow-FISH CRISPR screen from K562 (ENCLB157KQT)

description:
https://www.encodeproject.org/experiments/ENCSR346PHE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR346PHE
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB157KQT

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS059EJR at ENCODE; https://www.encodeproject.org/ENCBS059EJR/


title: Flow-FISH CRISPR screen from K562 (ENCLB696QHQ)

description:
https://www.encodeproject.org/experiments/ENCSR651CKH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR651CKH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB696QHQ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS100NYM at ENCODE; https://www.encodeproject.org/ENCBS100NYM/


title: STARR-seq from pancreas (ENCLB345ZMP)

description:
https://www.encodeproject.org/experiments/ENCSR230PPM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR230PPM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR208QSB
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB345ZMP
fragmentation methods: shearing (generic)
size range: 200-600

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: 63 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS039CUS at ENCODE; https://www.encodeproject.org/ENCBS039CUS/


title: Control CRISPR screen from K562 (ENCLB434KAE)

description:
https://www.encodeproject.org/experiments/ENCSR429DUU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR429DUU
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB434KAE

value: Pardis Sabeti, Broad

value: ENCBS544VCC at ENCODE; https://www.encodeproject.org/ENCBS544VCC/


title: STARR-seq from glutamatergic neuron (ENCLB016HLJ)

description:
https://www.encodeproject.org/experiments/ENCSR433JKU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR433JKU
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB016HLJ
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (episome) using transient transfection, genetically modified (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11, 14...

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: 30 year

value: Yin Shen

value: ENCBS654HPO at ENCODE; https://www.encodeproject.org/ENCBS654HPO/


title: Control CRISPR screen from K562 (ENCLB889XOG)

description:
https://www.encodeproject.org/experiments/ENCSR429DUU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR429DUU
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB889XOG

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS956JVV at ENCODE; https://www.encodeproject.org/ENCBS956JVV/


title: Flow-FISH CRISPR screen from K562 (ENCLB580QWE)

description:
https://www.encodeproject.org/experiments/ENCSR427ERR/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS2
experiment encode accession: ENCSR427ERR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB580QWE

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS504WRL at ENCODE; https://www.encodeproject.org/ENCBS504WRL/


title: Flow-FISH CRISPR screen from K562 (ENCLB462VJZ)

description:
https://www.encodeproject.org/experiments/ENCSR211TEA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR211TEA
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB462VJZ

value: Pardis Sabeti, Broad

value: ENCBS981OMN at ENCODE; https://www.encodeproject.org/ENCBS981OMN/


title: Flow-FISH CRISPR screen from K562 (ENCLB454NZF)

description:
https://www.encodeproject.org/experiments/ENCSR427ERR/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS2
experiment encode accession: ENCSR427ERR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB454NZF

value: ENCBS355VZL at ENCODE; https://www.encodeproject.org/ENCBS355VZL/


title: Flow-FISH CRISPR screen from K562 (ENCLB753MRP)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB753MRP
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS199ZHJ at ENCODE; https://www.encodeproject.org/ENCBS199ZHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB284AGH)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB284AGH
size range: 200-210

value: ENCBS127JMT at ENCODE; https://www.encodeproject.org/ENCBS127JMT/


title: Flow-FISH CRISPR screen from K562 (ENCLB783UCR)

description:
https://www.encodeproject.org/experiments/ENCSR989UTR/
***************
biological replicate number: 2
technical replicate number: 1
description: FEN1
experiment encode accession: ENCSR989UTR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB783UCR

value: ENCBS016QAG at ENCODE; https://www.encodeproject.org/ENCBS016QAG/


title: Flow-FISH CRISPR screen from K562 (ENCLB967LLZ)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB967LLZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB935GUB)

description:
https://www.encodeproject.org/experiments/ENCSR989UTR/
***************
biological replicate number: 1
technical replicate number: 1
description: FEN1
experiment encode accession: ENCSR989UTR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB935GUB

value: ENCBS833GOB at ENCODE; https://www.encodeproject.org/ENCBS833GOB/


title: Control CRISPR screen from K562 (ENCLB416PSU)

description:
https://www.encodeproject.org/experiments/ENCSR925GGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR925GGJ
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB416PSU

value: cell line

value: ENCBS444KIW at ENCODE; https://www.encodeproject.org/ENCBS444KIW/


title: Flow-FISH CRISPR screen from K562 (ENCLB064RVE)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB064RVE
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB625DTT)

description:
https://www.encodeproject.org/experiments/ENCSR951RMF/
***************
biological replicate number: 2
technical replicate number: 1
description: PVT1
experiment encode accession: ENCSR951RMF
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB625DTT

value: adult

value: 53 year

value: ENCBS610KAT at ENCODE; https://www.encodeproject.org/ENCBS610KAT/


title: Flow-FISH CRISPR screen from K562 (ENCLB645MMC)

description:
https://www.encodeproject.org/experiments/ENCSR913DHP/
***************
biological replicate number: 2
technical replicate number: 1
description: PVT1
experiment encode accession: ENCSR913DHP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB645MMC

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;


title: Control CRISPR screen from K562 (ENCLB444UWS)

description:
https://www.encodeproject.org/experiments/ENCSR925GGJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR925GGJ
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB444UWS

value: Pardis Sabeti, Broad

value: ENCBS140ZOP at ENCODE; https://www.encodeproject.org/ENCBS140ZOP/


title: Flow-FISH CRISPR screen from K562 (ENCLB862MDM)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB862MDM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB666NDL)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB666NDL
size range: 200-210


title: STARR-seq from pancreas (ENCLB560ALH)

description:
https://www.encodeproject.org/experiments/ENCSR874TTC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR874TTC
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR256MBM
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB560ALH
fragmentation methods: shearing (generic)
size range: 200-600

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: 78 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS968SMW at ENCODE; https://www.encodeproject.org/ENCBS968SMW/


title: Flow-FISH CRISPR screen from K562 (ENCLB696MKB)

description:
https://www.encodeproject.org/experiments/ENCSR808JNJ/
***************
biological replicate number: 2
technical replicate number: 1
description: HDAC6
experiment encode accession: ENCSR808JNJ
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB696MKB

value: cell line

value: ENCBS791CQO at ENCODE; https://www.encodeproject.org/ENCBS791CQO/


title: STARR-seq from pancreas (ENCLB820FJQ)

description:
https://www.encodeproject.org/experiments/ENCSR874TTC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR874TTC
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR256MBM
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB820FJQ
fragmentation methods: shearing (generic)
size range: 200-600

value: female

value: ENCBS866TFA at ENCODE; https://www.encodeproject.org/ENCBS866TFA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB012YLH)

description:
https://www.encodeproject.org/experiments/ENCSR647XBL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR647XBL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB012YLH

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS498JOY at ENCODE; https://www.encodeproject.org/ENCBS498JOY/


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB506QWL)

description:
https://www.encodeproject.org/experiments/ENCSR650FUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR650FUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB506QWL

source_name: Homo sapiens female adult (33 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: 33 year

value: ENCBS990EWK at ENCODE; https://www.encodeproject.org/ENCBS990EWK/


title: STARR-seq from WTC11 (ENCLB068YXP)

description:
https://www.encodeproject.org/experiments/ENCSR749AQU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR749AQU
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB068YXP
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens WTC11 cell line genetically modified (episome) using transient transfection, genetically modified (insertion) using TALEN inserting M. musculus Neurog2

value: male

value: 30 year

value: Yin Shen

value: ENCBS195BTC at ENCODE; https://www.encodeproject.org/ENCBS195BTC/


title: Flow-FISH CRISPR screen from K562 (ENCLB898LFV)

description:
https://www.encodeproject.org/experiments/ENCSR713SMA/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS3
experiment encode accession: ENCSR713SMA
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB898LFV

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS457YJS at ENCODE; https://www.encodeproject.org/ENCBS457YJS/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB573DJL)

description:
https://www.encodeproject.org/experiments/ENCSR647HGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR647HGY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB573DJL

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-15 for 1 hour

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: adult

value: 39 year

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS367TRN at ENCODE; https://www.encodeproject.org/ENCBS367TRN/


title: Flow-FISH CRISPR screen from K562 (ENCLB872ILN)

description:
https://www.encodeproject.org/experiments/ENCSR713SMA/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS3
experiment encode accession: ENCSR713SMA
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB872ILN

value: ENCBS886LMR at ENCODE; https://www.encodeproject.org/ENCBS886LMR/


title: Flow-FISH CRISPR screen from K562 (ENCLB639YRA)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB639YRA
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS127JMT at ENCODE; https://www.encodeproject.org/ENCBS127JMT/


title: Flow-FISH CRISPR screen from K562 (ENCLB359ATF)

description:
https://www.encodeproject.org/experiments/ENCSR807ESI/
***************
biological replicate number: 2
technical replicate number: 1
description: FEN1
experiment encode accession: ENCSR807ESI
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB359ATF

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS016QAG at ENCODE; https://www.encodeproject.org/ENCBS016QAG/


title: Flow-FISH CRISPR screen from K562 (ENCLB919BYJ)

description:
https://www.encodeproject.org/experiments/ENCSR169ALP/
***************
biological replicate number: 2
technical replicate number: 1
description: HDAC6
experiment encode accession: ENCSR169ALP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB919BYJ

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: ENCBS791CQO at ENCODE; https://www.encodeproject.org/ENCBS791CQO/


title: Flow-FISH CRISPR screen from K562 (ENCLB475ZOV)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB475ZOV
size range: 200-210

value: ENCBS280TOU at ENCODE; https://www.encodeproject.org/ENCBS280TOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB570HYY)

description:
https://www.encodeproject.org/experiments/ENCSR169ALP/
***************
biological replicate number: 1
technical replicate number: 1
description: HDAC6
experiment encode accession: ENCSR169ALP
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB570HYY

value: female

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS066DCU at ENCODE; https://www.encodeproject.org/ENCBS066DCU/


title: STARR-seq from glutamatergic neuron (ENCLB336PGE)

description:
https://www.encodeproject.org/experiments/ENCSR433JKU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR433JKU
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB336PGE
fragmentation methods: shearing (generic)
size range: 200-600

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: adult

value: 30 year

value: Kevin White, UChicago

value: Yin Shen

value: ENCBS229NUR at ENCODE; https://www.encodeproject.org/ENCBS229NUR/


title: STARR-seq from WTC11 (ENCLB552WHA)

description:
https://www.encodeproject.org/experiments/ENCSR749AQU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR749AQU
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR111MBH
encode release date: 2023-03-09
lab: Kevin White, UChicago
library encode accession: ENCLB552WHA
fragmentation methods: shearing (generic)
size range: 200-600

value: cell line

value: ENCBS893PLW at ENCODE; https://www.encodeproject.org/ENCBS893PLW/


title: Flow-FISH CRISPR screen from K562 (ENCLB985WGQ)

description:
https://www.encodeproject.org/experiments/ENCSR808JNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: HDAC6
experiment encode accession: ENCSR808JNJ
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR925GGJ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB985WGQ

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad


title: Flow-FISH CRISPR screen from K562 (ENCLB842CYN)

description:
https://www.encodeproject.org/experiments/ENCSR807ESI/
***************
biological replicate number: 1
technical replicate number: 1
description: FEN1
experiment encode accession: ENCSR807ESI
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB842CYN

value: ATCC

value: ENCBS833GOB at ENCODE; https://www.encodeproject.org/ENCBS833GOB/


title: Flow-FISH CRISPR screen from K562 (ENCLB222XRI)

description:
https://www.encodeproject.org/experiments/ENCSR130XPY/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS1
experiment encode accession: ENCSR130XPY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB222XRI

value: female

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS505MJU at ENCODE; https://www.encodeproject.org/ENCBS505MJU/


title: Control STARR-seq from K562 (ENCLB384HAA)

description:
https://www.encodeproject.org/experiments/ENCSR036YOP/
***************
biological replicate number: 3
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR036YOP
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB384HAA
fragmentation methods: none
size range: 250-650

value: Haiyuan Yu, Cornell

value: ENCBS575ATB at ENCODE; https://www.encodeproject.org/ENCBS575ATB/


title: Control STARR-seq from K562 (ENCLB726IWS)

description:
https://www.encodeproject.org/experiments/ENCSR036YOP/
***************
biological replicate number: 1
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR036YOP
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB726IWS
fragmentation methods: none
size range: 250-650

value: adult

value: ENCBS601BEQ at ENCODE; https://www.encodeproject.org/ENCBS601BEQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB113WYX)

description:
https://www.encodeproject.org/experiments/ENCSR650GUQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR650GUQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB113WYX
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS127JMT at ENCODE; https://www.encodeproject.org/ENCBS127JMT/


title: Flow-FISH CRISPR screen from K562 (ENCLB401RTW)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB401RTW
size range: 200-210

value: ENCBS280TOU at ENCODE; https://www.encodeproject.org/ENCBS280TOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB307CKN)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB307CKN
size range: 200-210

value: cell line

value: ENCBS175YYA at ENCODE; https://www.encodeproject.org/ENCBS175YYA/


title: Control STARR-seq from K562 (ENCLB237YPJ)

description:
https://www.encodeproject.org/experiments/ENCSR036YOP/
***************
biological replicate number: 2
technical replicate number: 1
description: Single human gDNA fragments and concatenated pairs of such fragments were tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR036YOP
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB237YPJ
fragmentation methods: none
size range: 250-650

value: chronic myelogenous leukemia (CML)

value: ENCBS623SPP at ENCODE; https://www.encodeproject.org/ENCBS623SPP/


title: Flow-FISH CRISPR screen from K562 (ENCLB497OXG)

description:
https://www.encodeproject.org/experiments/ENCSR009YJO/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS2
experiment encode accession: ENCSR009YJO
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB497OXG

value: 53 year

value: Pardis Sabeti, Broad

value: ENCBS504WRL at ENCODE; https://www.encodeproject.org/ENCBS504WRL/


title: Flow-FISH CRISPR screen from K562 (ENCLB986VQV)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB986VQV
size range: 200-210

value: female

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB561IXV)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB561IXV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB917XMO)

description:
https://www.encodeproject.org/experiments/ENCSR009YJO/
***************
biological replicate number: 1
technical replicate number: 1
description: FADS2
experiment encode accession: ENCSR009YJO
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB917XMO

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS355VZL at ENCODE; https://www.encodeproject.org/ENCBS355VZL/


title: STARR-seq from pancreas (ENCLB019ACG)

description:
https://www.encodeproject.org/experiments/ENCSR001HGB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR001HGB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR208QSB
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB019ACG
fragmentation methods: shearing (generic)
size range: 200-600

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: 78 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS677LUW at ENCODE; https://www.encodeproject.org/ENCBS677LUW/


title: Flow-FISH CRISPR screen from K562 (ENCLB282ODP)

description:
https://www.encodeproject.org/experiments/ENCSR130XPY/
***************
biological replicate number: 2
technical replicate number: 1
description: FADS1
experiment encode accession: ENCSR130XPY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR429DUU
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB282ODP

value: cell line

value: adult

value: ENCBS893ZPD at ENCODE; https://www.encodeproject.org/ENCBS893ZPD/


title: PRO-cap from subcutaneous adipose tissue (ENCLB082XOH)

description:
https://www.encodeproject.org/experiments/ENCSR386RDW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Subcutaneous adipose tissue.
experiment encode accession: ENCSR386RDW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB082XOH

source_name: Homo sapiens female adult (53 years) subcutaneous adipose tissue

value: subcutaneous adipose tissue

value: tissue

value: 53 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS145DYG at ENCODE; https://www.encodeproject.org/ENCBS145DYG/


title: CRISPR screen from K562 (ENCLB489ONO)

description:
https://www.encodeproject.org/experiments/ENCSR395WAX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR395WAX
assay title: CRISPR screen
assembly: GRCh38
encode release date: 2022-10-11
lab: Yin Shen, UCSF
library encode accession: ENCLB489ONO

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 0 days after the sample was treated with Puromycin

value: female

value: chronic myelogenous leukemia (CML)

value: Yin Shen, UCSF

value: ATCC

value: ENCBS119DLG at ENCODE; https://www.encodeproject.org/ENCBS119DLG/


title: PRO-cap from uterus (ENCLB359CRR)

description:
https://www.encodeproject.org/experiments/ENCSR399LAD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR399LAD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB359CRR

source_name: Homo sapiens female adult (46 years) uterus tissue

value: uterus

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder

value: ENCBS098DQG at ENCODE; https://www.encodeproject.org/ENCBS098DQG/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB518WJK)

description:
https://www.encodeproject.org/experiments/ENCSR642FCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR642FCN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB518WJK

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS750SXH at ENCODE; https://www.encodeproject.org/ENCBS750SXH/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB872CSI)

description:
https://www.encodeproject.org/experiments/ENCSR386UFU/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR386UFU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB872CSI

source_name: Homo sapiens peripheral blood mononuclear primary cell

value: peripheral blood mononuclear cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS248HHY at ENCODE; https://www.encodeproject.org/ENCBS248HHY/


title: PRO-cap from ascending aorta (ENCLB028EJZ)

description:
https://www.encodeproject.org/experiments/ENCSR384HWB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ascending aorta.
experiment encode accession: ENCSR384HWB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB028EJZ

source_name: Homo sapiens female adult (53 years) ascending aorta tissue

value: ascending aorta

value: tissue

value: female

value: 53 year

value: GTEx

value: ENCBS774BZL at ENCODE; https://www.encodeproject.org/ENCBS774BZL/


title: Flow-FISH CRISPR screen from K562 (ENCLB232VFS)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB232VFS
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS280TOU at ENCODE; https://www.encodeproject.org/ENCBS280TOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB443BEF)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB443BEF
size range: 200-210

value: ENCBS175YYA at ENCODE; https://www.encodeproject.org/ENCBS175YYA/


title: PRO-cap from breast epithelium (ENCLB286CQM)

description:
https://www.encodeproject.org/experiments/ENCSR393PGX/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast epithelium.
experiment encode accession: ENCSR393PGX
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB286CQM

source_name: Homo sapiens female adult (53 years) breast epithelium tissue

value: breast epithelium

value: ENCBS604MBJ at ENCODE; https://www.encodeproject.org/ENCBS604MBJ/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB337HUD)

description:
https://www.encodeproject.org/experiments/ENCSR382HFH/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR382HFH
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB337HUD

value: peripheral blood mononuclear cell

value: primary cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS389KNX at ENCODE; https://www.encodeproject.org/ENCBS389KNX/


title: PRO-cap from uterus (ENCLB129HZM)

description:
https://www.encodeproject.org/experiments/ENCSR399LAD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR399LAD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB129HZM

value: uterus

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Michael Snyder

value: ENCBS098DQG at ENCODE; https://www.encodeproject.org/ENCBS098DQG/


title: PRO-cap from ascending aorta (ENCLB826HPI)

description:
https://www.encodeproject.org/experiments/ENCSR384HWB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ascending aorta.
experiment encode accession: ENCSR384HWB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB826HPI

value: ascending aorta

value: adult

value: 53 year

value: GTEx

value: ENCBS774BZL at ENCODE; https://www.encodeproject.org/ENCBS774BZL/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB396FVF)

description:
https://www.encodeproject.org/experiments/ENCSR382HFH/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR382HFH
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB396FVF

value: peripheral blood mononuclear cell

value: primary cell

value: not collected


title: PRO-cap from heart right ventricle (ENCLB409YDP)

description:
https://www.encodeproject.org/experiments/ENCSR380VKC/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle of heart.
experiment encode accession: ENCSR380VKC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB409YDP

source_name: Homo sapiens female adult (41 years) heart right ventricle tissue

value: heart right ventricle

value: 41 year

value: Haiyuan Yu, Cornell

value: ENCBS498MDO at ENCODE; https://www.encodeproject.org/ENCBS498MDO/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB120PQS)

description:
https://www.encodeproject.org/experiments/ENCSR639HIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR639HIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB120PQS

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour

value: female

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS769TWO at ENCODE; https://www.encodeproject.org/ENCBS769TWO/


title: CRISPR screen from K562 (ENCLB639QWX)

description:
https://www.encodeproject.org/experiments/ENCSR395WAX/
***************
biological replicate number: 2
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR395WAX
assay title: CRISPR screen
assembly: GRCh38
encode release date: 2022-10-11
lab: Yin Shen, UCSF
library encode accession: ENCLB639QWX

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: Yin Shen, UCSF

value: ATCC

value: ENCBS229RRT at ENCODE; https://www.encodeproject.org/ENCBS229RRT/


title: STARR-seq from pancreas (ENCLB500JKH)

description:
https://www.encodeproject.org/experiments/ENCSR001HGB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR001HGB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR208QSB
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB500JKH
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens with pancreatic ductal adenocarcinoma; pancreas organoid genetically modified (episome) using transient transfection

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: 78 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS829NZA at ENCODE; https://www.encodeproject.org/ENCBS829NZA/


title: DNase-seq from immature natural killer cell (ENCLB843MDC)

description:
https://www.encodeproject.org/experiments/ENCSR641JOW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR641JOW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB843MDC

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS554HVC at ENCODE; https://www.encodeproject.org/ENCBS554HVC/


title: Flow-FISH CRISPR screen from K562 (ENCLB091VEW)

description:
https://www.encodeproject.org/experiments/ENCSR638HLU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR638HLU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091VEW
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS330KNS at ENCODE; https://www.encodeproject.org/ENCBS330KNS/


title: Flow-FISH CRISPR screen from K562 (ENCLB221DFJ)

description:
https://www.encodeproject.org/experiments/ENCSR642XRC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR642XRC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB221DFJ
size range: 200-210

value: ATCC

value: ENCBS175YYA at ENCODE; https://www.encodeproject.org/ENCBS175YYA/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB907JJS)

description:
https://www.encodeproject.org/experiments/ENCSR379LON/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR379LON
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB907JJS

source_name: Homo sapiens female adult (41 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: 41 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS264JRT at ENCODE; https://www.encodeproject.org/ENCBS264JRT/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB252GYK)

description:
https://www.encodeproject.org/experiments/ENCSR639HIL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR639HIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB252GYK

value: primary cell

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS166WFV at ENCODE; https://www.encodeproject.org/ENCBS166WFV/


title: PRO-cap from subcutaneous adipose tissue (ENCLB097CGJ)

description:
https://www.encodeproject.org/experiments/ENCSR386RDW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Subcutaneous adipose tissue.
experiment encode accession: ENCSR386RDW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB097CGJ

value: subcutaneous adipose tissue

value: tissue

value: female

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS145DYG at ENCODE; https://www.encodeproject.org/ENCBS145DYG/


title: PRO-cap from heart right ventricle (ENCLB433EBD)

description:
https://www.encodeproject.org/experiments/ENCSR380VKC/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right ventricle of heart.
experiment encode accession: ENCSR380VKC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB433EBD

value: heart right ventricle

value: DM:no; HTN:no; CAD:no

value: adult

value: Michael Snyder

value: ENCBS498MDO at ENCODE; https://www.encodeproject.org/ENCBS498MDO/


title: Flow-FISH CRISPR screen from K562 (ENCLB414COI)

description:
https://www.encodeproject.org/experiments/ENCSR638HLU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR638HLU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB414COI
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS330KNS at ENCODE; https://www.encodeproject.org/ENCBS330KNS/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB596NOF)

description:
https://www.encodeproject.org/experiments/ENCSR379LON/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR379LON
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB596NOF

value: primary cell

value: 41 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS379QGY at ENCODE; https://www.encodeproject.org/ENCBS379QGY/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB748ZXI)

description:
https://www.encodeproject.org/experiments/ENCSR386UFU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR386UFU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB748ZXI

value: peripheral blood mononuclear cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS248HHY at ENCODE; https://www.encodeproject.org/ENCBS248HHY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB067PYQ)

description:
https://www.encodeproject.org/experiments/ENCSR640KVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR640KVD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB067PYQ

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: adult

value: 42 year

value: AllCells

value: ENCBS801BMN at ENCODE; https://www.encodeproject.org/ENCBS801BMN/


title: PRO-cap from cytotoxic T cell (ENCLB756EEP)

description:
https://www.encodeproject.org/experiments/ENCSR594WJV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cytotoxic T cells.
experiment encode accession: ENCSR594WJV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB756EEP

source_name: Homo sapiens cytotoxic T primary cell

value: cytotoxic T cell

value: primary cell

value: ENCBS203PZU at ENCODE; https://www.encodeproject.org/ENCBS203PZU/


title: Flow-FISH CRISPR screen from K562 (ENCLB420XGB)

description:
https://www.encodeproject.org/experiments/ENCSR638HLU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR638HLU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB420XGB
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS330KNS at ENCODE; https://www.encodeproject.org/ENCBS330KNS/


title: PRO-cap from breast (ENCLB553FTQ)

description:
https://www.encodeproject.org/experiments/ENCSR374RDU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR374RDU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB553FTQ

source_name: Homo sapiens female adult (52 years) breast tissue

value: breast

value: tissue

value: 52 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS848NCH at ENCODE; https://www.encodeproject.org/ENCBS848NCH/


title: DNase-seq from A673 (ENCLB447XHP)

description:
https://www.encodeproject.org/experiments/ENCSR598EYT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR598EYT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB447XHP

source_name: Homo sapiens A673 cell line

value: child

value: 15 year

value: John Stamatoyannopoulos, UW

value: ENCBS987ABJ at ENCODE; https://www.encodeproject.org/ENCBS987ABJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB254PAB)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB254PAB
size range: 200-210

value: cell line

value: adult

value: ENCBS388ITS at ENCODE; https://www.encodeproject.org/ENCBS388ITS/


title: Flow-FISH CRISPR screen from K562 (ENCLB400ZMP)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB400ZMP
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS981HLT at ENCODE; https://www.encodeproject.org/ENCBS981HLT/


title: Flow-FISH CRISPR screen from K562 (ENCLB988FMM)

description:
https://www.encodeproject.org/experiments/ENCSR638HLU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR638HLU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB988FMM
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS330KNS at ENCODE; https://www.encodeproject.org/ENCBS330KNS/


title: PRO-cap from cytotoxic T cell (ENCLB391OFR)

description:
https://www.encodeproject.org/experiments/ENCSR594WJV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cytotoxic T cells.
experiment encode accession: ENCSR594WJV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB391OFR

value: cytotoxic T cell

value: primary cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS203PZU at ENCODE; https://www.encodeproject.org/ENCBS203PZU/


title: DNase-seq from HCT116 (ENCLB073ZMT)

description:
https://www.encodeproject.org/experiments/ENCSR374TMP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR374TMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB073ZMT

source_name: Homo sapiens HCT116 cell line

value: cell line

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS449RYZ at ENCODE; https://www.encodeproject.org/ENCBS449RYZ/


title: PRO-cap from pulmonary artery (ENCLB362AJL)

description:
https://www.encodeproject.org/experiments/ENCSR368ARY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pulmonary artery.
experiment encode accession: ENCSR368ARY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB362AJL

source_name: Homo sapiens male adult (62 years) pulmonary artery tissue

value: pulmonary artery

value: tissue

value: adult

value: 62 year

value: CHTN

value: ENCBS094JHH at ENCODE; https://www.encodeproject.org/ENCBS094JHH/


title: Flow-FISH CRISPR screen from K562 (ENCLB730KLU)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB730KLU
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS981HLT at ENCODE; https://www.encodeproject.org/ENCBS981HLT/


title: DNase-seq from HCT116 (ENCLB018CBN)

description:
https://www.encodeproject.org/experiments/ENCSR374TMP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR374TMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB018CBN

value: cell line

value: male

value: colorectal carcinoma

value: ENCBS894WKH at ENCODE; https://www.encodeproject.org/ENCBS894WKH/


title: PRO-cap from pancreas (ENCLB503TFP)

description:
https://www.encodeproject.org/experiments/ENCSR374OGG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR374OGG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB503TFP

source_name: Homo sapiens pancreas organoid

value: pancreas

value: organoid

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS829OTC at ENCODE; https://www.encodeproject.org/ENCBS829OTC/


title: DNase-seq from HCT116 (ENCLB747LCX)

description:
https://www.encodeproject.org/experiments/ENCSR364TYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR364TYN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB747LCX

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS884YJL at ENCODE; https://www.encodeproject.org/ENCBS884YJL/


title: PRO-cap from pulmonary artery (ENCLB323BQP)

description:
https://www.encodeproject.org/experiments/ENCSR368ARY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pulmonary artery.
experiment encode accession: ENCSR368ARY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB323BQP

value: pulmonary artery

value: tissue

value: 62 year

value: CHTN

value: ENCBS094JHH at ENCODE; https://www.encodeproject.org/ENCBS094JHH/


title: Control CRISPR screen from glutamatergic neuron (ENCLB288QIX)

description:
https://www.encodeproject.org/experiments/ENCSR364KFC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR364KFC
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB288QIX

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using C...

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS457ZRQ at ENCODE; https://www.encodeproject.org/ENCBS457ZRQ/


title: Control CRISPR screen from glutamatergic neuron (ENCLB518XKZ)

description:
https://www.encodeproject.org/experiments/ENCSR364KFC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR364KFC
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB518XKZ

value: adult

value: ENCBS004VDI at ENCODE; https://www.encodeproject.org/ENCBS004VDI/


title: PRO-cap from pancreas (ENCLB867HDS)

description:
https://www.encodeproject.org/experiments/ENCSR374OGG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR374OGG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB867HDS

value: pancreas

value: organoid

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS829OTC at ENCODE; https://www.encodeproject.org/ENCBS829OTC/


title: DNase-seq from activated T-cell (ENCLB254VDT)

description:
https://www.encodeproject.org/experiments/ENCSR364KAX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR364KAX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB254VDT

source_name: Homo sapiens female adult (40 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: 40 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS565RVF at ENCODE; https://www.encodeproject.org/ENCBS565RVF/


title: DNase-seq from activated T-cell (ENCLB983GKB)

description:
https://www.encodeproject.org/experiments/ENCSR364KAX/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR364KAX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB983GKB

value: adult

value: ENCBS072RUI at ENCODE; https://www.encodeproject.org/ENCBS072RUI/


title: DNase-seq from activated T-cell (ENCLB505DMD)

description:
https://www.encodeproject.org/experiments/ENCSR364KAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR364KAX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB505DMD

value: ENCBS315HFX at ENCODE; https://www.encodeproject.org/ENCBS315HFX/


title: Flow-FISH CRISPR screen from K562 (ENCLB564FYG)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB564FYG
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS388ITS at ENCODE; https://www.encodeproject.org/ENCBS388ITS/


title: Flow-FISH CRISPR screen from K562 (ENCLB460ITG)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB460ITG
size range: 200-210

value: female

value: ENCBS981HLT at ENCODE; https://www.encodeproject.org/ENCBS981HLT/


title: Flow-FISH CRISPR screen from K562 (ENCLB590ZON)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB590ZON
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB855JJY)

description:
https://www.encodeproject.org/experiments/ENCSR638GOI/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR638GOI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB855JJY
size range: 200-210


title: PRO-cap from H9 (ENCLB235KMH)

description:
https://www.encodeproject.org/experiments/ENCSR359PWL/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 ESCs.
experiment encode accession: ENCSR359PWL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB235KMH

source_name: Homo sapiens H9 cell line

value: healthy

value: embryonic

value: 5 day

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS319XNA at ENCODE; https://www.encodeproject.org/ENCBS319XNA/


title: PRO-cap from H9 (ENCLB800WOU)

description:
https://www.encodeproject.org/experiments/ENCSR359PWL/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 ESCs.
experiment encode accession: ENCSR359PWL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB800WOU

value: ENCBS799NXG at ENCODE; https://www.encodeproject.org/ENCBS799NXG/


title: PRO-cap from breast (ENCLB021PDK)

description:
https://www.encodeproject.org/experiments/ENCSR374RDU/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR374RDU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB021PDK

value: breast

value: tissue

value: adult

value: 52 year

value: CHTN

value: ENCBS848NCH at ENCODE; https://www.encodeproject.org/ENCBS848NCH/


title: PRO-cap from ovary (ENCLB593LYH)

description:
https://www.encodeproject.org/experiments/ENCSR357VUN/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR357VUN
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB593LYH

source_name: Homo sapiens female adult (45 years) ovary tissue

value: ovary

value: 45 year

value: ENCBS177BYG at ENCODE; https://www.encodeproject.org/ENCBS177BYG/