title: Tcf21KO 16wk 3 tdt RNA

description: Library name: Tcf21_16wk_tdt3

value: Tcf21f/f, Tdt+/+, ApoE-/-,Myh11Cre


title: Control 16wk 5 tdt RNA

status: Public on Feb 27 2026

type: SRA

city: Stanford

first: Thomas

last: Quertermous

state: CA

address: 300 Pasteur Drive

department: Medicine Cardiology

country: USA

institute: Stanford University

description: Library name: 16wk_tdt5

library_source: transcriptomic single cell

data_processing:
RNA fastq files were processed using Cellranger v7.0.1 (10x Genomics) to obtain transcript count matrices and aligned to mouse transcriptome mm10-2020-A-2.0.0 (10x Genomics) with custom addition of lineage tracing tdTomato transcript. Samples at each timepoint were aggregated and analyzed with R package with Seurat (v4.3)68. Low-quality cells and mitochondrial-rich cells were filtered with parameters mitochondrial percentage < 6%, ribosomal percentage < 25%, and nFeature_RNA > 1250 and < 8000. Gene expression count matrices underwent log-transformation and library-specific scaling. Importantly, no additional batch correction for visualization was required in the pre-processing steps given the uniform processing of mice samples. Principal component analysis was used for dimensionality reduction followed by clustering using the Louvain algorithm. For the full timecourse dataset, aligned scRNA files from Control and Tcf21-KO data were merged and processed with identical QC parameters as above. Clustering was then performed on this merged dataset in order to ensure comparable differential gene analysis and pseudotime comparisons. The processed dataset is then split into Control and Tcf21-KO objects for independent analysis. We further applied logistic regression to determine the optimal tdTomato expression cutoff and subset on SMC-derived lineage cells exclusive to tdTomato fluorescence-activated cell sorting (FACS). For force directed layouts, we followed methods as described in Schiebinger et al. 50 dimensional diffusion components are calculated with SCANPY (1.9.3) with default parameters. For each cell, its 20 nearest neighbors was used to produce a nearest neighbor map. Then we applied leiden clustering at a resolution of 0.36 and generated cluster connectivities via PAGA and visualized the force-directed layout on the k-NN graph using ForceAtlas2. scATAC Raw fastq files were uniformly processed using Cellranger-atac-2.1.0 (10x Genomics) and aligned to cellranger-arc-mm10-2020-A-2.0.0 reference genome (10x Genomics). The data were processed to remove low-quality cells and reads with low mapping quality with parameters peak_region_fragments > 2500, peak_region_fragments < 100000, pct_reads_in_peaks > 30, nucleosome_signal <= 4, TSS.enrichment > 2. The remaining reads were then used to construct a sparse binary matrix, representing chromatin accessibility states across individual cells and genomic regions. A unified set of peaks from all samples (Control and Tcf21-KO) were merged using overlapping and adjacent peaks using CellRanger-ATAC aggr protocol. This unified peak set was re-quantified by term frequency-inverse document frequency (TF-IDF) using Signac69 (1.10) RunTFIDF. To preprocess scRNA and scATAC data for integration, gene activities are first calculated from chromatin accessibility data using GeneActivity() function from Signac with default parameters and log normalization. Datasets were integrated using canonical correlation analysis (CCA) with the Seurat RunCCA() function upon 2000 features using the SelectIntegrationFeatures() in Seurat. We then use the integrated dataset to perform pseudotime ordering using Slingshot70 (2.6) and split the dataset into 30 pseudotime bins for uniform downstream analyses.
Assembly: mm10
Supplementary files format and content: rds file, aggregated scRNA file, aggregated scATAC file

molecule: polyA RNA

organism: Mus musculus

source_name: mouse aortic root and proximal ascending

extract_protocol:
Samples from mouse aorta were dissociated into single cells for RNA and ATAC sequencing using the 10x Genomics Chromium platform. Euthanized mice are perfused with phosphate buffered saline and dissected to obtain the aortic root up to the level of the brachiocephalic artery. The tissue is washed with PBS and incubated in an enzymatic dissociation cocktail containing Liberase (5401127001; Sigma-Aldrich) and Elastase (LS002279; Worthington) in Hank’s Balanced Salt Solution with calcium (HBSS+ Ca2+) for 30 minutes. Mechanical dissociation is performed for 5 minutes followed by visualization under the microscope to ensure single cell suspension. This suspension is strained through a 35µm nylon mesh snap cap into falcon test tubes (352235 BD) followed by FACS sorting (Sony SH800) for tdTomato positive and negative cells in parallel. For single cell ATAC, nuclei was isolated per 10X recommended protocol and captured on the 10X scATAC platform. For both scRNA and scATAC runs, samples at some intermediate time points were processed as pooled samples with tdTomato and non-tdTomato loaded at 1:1 ratio after FACS and listed in Supplementary Data 1.
Each individually sorted cell suspension was loaded onto 10x GEM G or H chips with remainder per 10x protocols (Chromium Single Cell 3’ RNA V3.1, Chromium Single Cell ATAC V2). Single-cell libraries were constructed according to manufacturer’s instructions with index labeling using the Dual Index Kit TT set A for scRNA-seq and Single Index kit NT for scATAC-seq. This allows for library pooling into one lane for sequencing on the Illumina NovaSeq6000 platform with a targeted depth of 40-50,000 reads per cell for RNA and 75,000 reads/cell for ATAC.

tag: tissue

tag: genotype

value: Tdt+/+, ApoE-/-,Myh11Cre


title: Control 16wk 1 nontdt RNA

description: Library name: 16wk_nontdt1

value: mouse aortic root and proximal ascending


title: Tcf21KO 5wk 1 tdt RNA

description: Library name: Tcf21_5wk_tdt


title: Control 16wk 1 tdt RNA

description: Library name: 16wk_tdt1


title: Control 12wk 1 non-tdt RNA

description: Library name: 12wk_nontdt1


title: Tcf21KO 12wk 1 tdt RNA

description: Library name: Tcf21_12wk_tdt


title: Control 5wk 2 tdt ATAC

description: Library name: 5wk_ATAC_tdt2

library_source: genomic single cell

molecule: genomic DNA


title: Control 9wk 2 mixed RNA

description: Library name: 9wk_2


title: Control 7wk 2 mixed RNA

description: Library name: 7wk_2


title: Control 12wk 1 tdt RNA

description: Library name: 12wk_tdt1


title: Control 16wk 2 nontdt RNA

description: Library name: 16wk_nontdt2


title: Control 16wk 3 tdt RNA

description: Library name: 16wk_tdt3


title: Control 16wk 4 tdt RNA

description: Library name: 16wk_tdt4


title: Control 16wk 3 nontdt RNA

description: Library name: 16wk_nontdt3


title: Control 5wk 3 tdt RNA

description: Library name: 5wk_3_tdt


title: Control 3wk 2 mixed RNA

description: Library name: 3wk_2


title: Control 5wk 3 nontdt RNA

description: Library name: 5wk_3_nontdt


title: Control 16wk 2 tdt RNA

description: Library name: 16wk_tdt2


title: Control 3wk 1 mixed RNA

description: Library name: 3wk_1


title: Control 5wk 1 mixed RNA

description: Library name: 5wk_1


title: Tcf21KO 5wk 1 nontdt RNA

description: Library name: Tcf21_5wk_nontdt


title: Control 0wk 1 mixed RNA

description: Library name: 0wk_1


title: Control 0wk 2 mixed RNA

description: Library name: 0wk_2


title: Control 5wk 2 mixed RNA

description: Library name: 5wk_2


title: Spherule, Exosome, RiboMarker, 2

status: Public on Feb 26 2026

city: Santa Cruz

first: Deanna

last: Fedash

address: 2125 Delaware Ave

institute: RealSeq Biosciences

description: Library name: Spherule_Exosome_RiboMarker_2

library_source: transcriptomic

data_processing:
Sequencing reads were trimmed of adapter sequence using cutadapt version 4.6 [--nextseq-trim=15 -u 1 -a TGGAATTCTCGGGTGCCAAGG -m 15] (31). Reads were then aligned to ncRNA transcripts identified using RFAM, with the addition of the high-confidence set of tRNA isodecoders containing -CCA tails identified using tRNAScan-SE (32),  and then to theC. posadasii strain Silveira (GCA_000170175.2) genome. ShortStack v4.1.0 (33) with the parameters [-pad 3 –mincov 0.5rpm] was used to identify potential novel sRNA transcripts. Reads overlapping with known annotations were summed and the corresponding read counts were used for downstream differential analysis.
Assembly: GCA_000170175.2 (Silveria 2011)
Supplementary files format and content: csv files contain raw read counts for each sample

molecule: total RNA

organism: Coccidioides posadasii

source_name: exosomes

growth_protocol: C. posadasii (strain Δcts2/Δard1/Δcts3, NR-166; BEI Resources) arthroconidia were harvested from 6-week-old plates as previously described (29). The spores were inoculated at 1 × 106 arthroconidia into a 250 mL baffled Erlenmeyer flask containing 100 mL of 2xGYE at 150 rpm at 30 °C for 48 hours. Conditioned medium was harvested by collecting conditioned media with cells into centrifuge tubes and spun at 12,000 × g for 8 min to pellet the cells. The supernatant was pooled and filtered with a 0.22-µm syringe filter before being stored at −80°C.  To generate samples for the time course, in which arthroconidia transition to mycelia, 1 × 106 of harvested arthroconidia were incubated in 250 mL flat-bottom Erlenmeyer flasks (Corning, Corning, NY, USA) in 100 mL of 2x GYE media at 150 rpm at 30 °C. After 48 hours, the conditioned medium with cells was placed in into centrifuge tubes and spun at 12,000 × g for 8 min to pellet the cells. Half of the filtered fungal cells were kept for RNA isolation, while the condition media was spun down and supernatant was removed for extracellular RNA isolation. The remaining cells were reinoculated in fresh 2X GYE for 48 hours at 150 rpm at 30 °C. At 72 hrs post-media change, the fungal cells were separated from the growth media by filtering with a sterile 40 µm nylon mesh cell strainer.  Half of the filtered fungal cells were kept for RNA isolation, while the condition media was filtered with a 0.22-µm syringe filter before being stored at −80°C for extracellular RNA isolation. The remaining half of the filtered fungal cells were reintroduced again into fresh 2X GYE for 24 hours at 150 rpm at 30 °C.  This sample processing was performed again at 96 hrs for a total of 3 replicates of fungal cell samples and filtered conditioned media. C. posadasii spherules were propagated and harvested from 6-week-old plates as previously described (29). For spherule samples, 50 mL of Converse medium (30) was inoculated to a final concentration of 106 arthroconidia/mL. Cultures are then incubated at 39°C in a 10% CO2 shaking incubator at 150 rpm for ~ 3 days. Spherules are harvested by filtering culture through a nested filter into a 50 mL conical tube and then centrifuged at 9000 x g for 8 mins to pellet. Pellets were washed with 1x PBS twice, pelleted, then snap frozen for storage at -80°C until use.

extract_protocol:
C. posadasii mycelium, arthroconidia, and young (no endosporulation) spherule samples were stored in RNA Shield (Zymo Research) at −80°C until processing using the Quick-RNA™ Fungal
For small RNA-seq, libraries were prepared from total RNA using the RealSeq®-Biofluids library preparation kit (RealSeq Biosciences) according to the manufacturer’s instructions. Libraries for each ecotype, as well as cell-free and exosome samples, were generated separately and then pooled for the analysis. In some cases, triplicate libraries for each sample type and condition were not met, and thus, only duplicates were used in downstream analyses to avoid batch effects in the data. Finally, prepared libraries were pooled and subjected to single-end 75 cycles of sequencing using the F3 50 cycle sequencing kit (Note: reagents for 50 additional cycles above what is represented were included to account for index sequencing needs) on the Singular G4 system according to the manufacturer’s instructions (Singular Genomics).

treatment_protocol: For treatment of RNA with the Ribomarker® platform, 10 uL of RNA sample was incubated in a 15 μl reaction mixture containing 1.5 μl Ribomarker® Buffer 1, 1.5 uL of Ribomarker® Enzyme 1, and 2 uL of RNase-Free H2O at 37 °C for 10 min, followed by 80 °C for 2 min. Then, to this mixture was added 2 uL of Ribomarker® Buffer 2 and 2 uL of Ribomarker® Enzyme 2, which was then incubated at 37 °C for 60 min. Finally, 1 uL of Buffer 3 was added to the reaction and incubated at 37 °C for 60 min. The treated RNA was then isolated using an RNA Clean and Concentrator-5 kit for downstream use in library preparation.

tag: cell type

value: exosomes


title: Mycelia, Exosome, RiboMarker, 1

description: Library name: Mycelia_Exosome_RiboMarker_1


title: Mycelia, Exosome, RiboMarker, 3

description: Library name: Mycelia_Exosome_RiboMarker_3


title: Spherule, Exosome, RiboMarker, 3

description: Library name: Spherule_Exosome_RiboMarker_3


title: Arthrocelia, Exosome, RiboMarker, 2

description: Library name: Arthrocelia_Exosome_RiboMarker_2


title: Arthrocelia, Exosome, RiboMarker, 1

description: Library name: Arthrocelia_Exosome_RiboMarker_1


title: Control 9wk 1 mixed RNA

description: Library name: 9wk_1


title: Arthroconidia, Exosome, RiboMarker, 3

description: Library name: Arthroconidia_Exosome_RiboMarker_3


title: Control 7wk 1 mixed RNA

description: Library name: 7wk_1


title: Spherule, CellFree, RiboMarker, 3

description: Library name: Spherule_CellFree_RiboMarker_3

source_name: cell-free media

value: cell-free media


title: Arthrocelia, Exosome, RiboMarker, 3

description: Library name: Arthrocelia_Exosome_RiboMarker_3


title: Spherule, CellFree, RiboMarker, 2

description: Library name: Spherule_CellFree_RiboMarker_2


title: Spherule, CellFree, RiboMarker, 1

description: Library name: Spherule_CellFree_RiboMarker_1


title: Arthroconidia, Exosome, RiboMarker, 1

description: Library name: Arthroconidia_Exosome_RiboMarker_1


title: Arthroconidia, Exosome, RiboMarker, 2

description: Library name: Arthroconidia_Exosome_RiboMarker_2


title: Mycelia, CellFree, RiboMarker, 3

description: Library name: Mycelia_CellFree_RiboMarker_3


title: Arthrocelia, CellFree, RiboMarker, 1

description: Library name: Arthrocelia_CellFree_RiboMarker_1


title: Arthrocelia, CellFree, RiboMarker, 2

description: Library name: Arthrocelia_CellFree_RiboMarker_2


title: Mycelia, CellFree, RiboMarker, 2

description: Library name: Mycelia_CellFree_RiboMarker_2


title: Arthroconidia, CellFree, RiboMarker, 3

description: Library name: Arthroconidia_CellFree_RiboMarker_3


title: Arthrocelia, CellFree, RiboMarker, 3

description: Library name: Arthrocelia_CellFree_RiboMarker_3


title: Mycelia, CellFree, RiboMarker, 1

description: Library name: Mycelia_CellFree_RiboMarker_1


title: Arthroconidia, CellFree, RiboMarker, 1

description: Library name: Arthroconidia_CellFree_RiboMarker_1


title: Spherule, RiboMarker, 2

description: Library name: Spherule_RiboMarker_2

source_name: culture

value: culture


title: Arthrocelia, RiboMarker, 2

description: Library name: Arthrocelia_RiboMarker_2


title: Arthroconidia, RiboMarker, 3

description: Library name: Arthroconidia_RiboMarker_3


title: Mycelia, RiboMarker, 3

description: Library name: Mycelia_RiboMarker_3


title: Spherule, RiboMarker, 3

description: Library name: Spherule_RiboMarker_3


title: Arthrocelia, RiboMarker, 3

description: Library name: Arthrocelia_RiboMarker_3


title: Spherule, RiboMarker, 1

description: Library name: Spherule_RiboMarker_1


title: Spherule, Exosome, 1

description: Library name: Spherule_Exosome_1


title: Spherule, Exosome, 2

description: Library name: Spherule_Exosome_2


title: Arthrocelia, Exosome, 2

description: Library name: Arthrocelia_Exosome_2


title: Mycelia, Exosome, 2

description: Library name: Mycelia_Exosome_2


title: Arthroconidia, CellFree, RiboMarker, 2

description: Library name: Arthroconidia_CellFree_RiboMarker_2


title: Mycelia, Exosome, 3

description: Library name: Mycelia_Exosome_3


title: Mycelia, Exosome, 1

description: Library name: Mycelia_Exosome_1


title: Spherule, Exosome, 3

description: Library name: Spherule_Exosome_3


title: Arthrocelia, Exosome, 3

description: Library name: Arthrocelia_Exosome_3


title: Arthrocelia, Exosome, 1

description: Library name: Arthrocelia_Exosome_1


title: Arthroconidia, RiboMarker, 1

description: Library name: Arthroconidia_RiboMarker_1


title: Arthrocelia, RiboMarker, 1

description: Library name: Arthrocelia_RiboMarker_1


title: Arthroconidia, Exosome, 3

description: Library name: Arthroconidia_Exosome_3


title: Spherule, CellFree, 1

description: Library name: Spherule_CellFree_1


title: Arthroconidia, Exosome, 1

description: Library name: Arthroconidia_Exosome_1


title: Spherule, CellFree, 3

description: Library name: Spherule_CellFree_3


title: Spherule, CellFree, 2

description: Library name: Spherule_CellFree_2


title: Mycelia, RiboMarker, 1

description: Library name: Mycelia_RiboMarker_1


title: Arthroconidia, RiboMarker, 2

description: Library name: Arthroconidia_RiboMarker_2


title: Mycelia, CellFree, 2

description: Library name: Mycelia_CellFree_2


title: Arthroconidia, Exosome, 2

description: Library name: Arthroconidia_Exosome_2


title: Arthrocelia, CellFree, 3

description: Library name: Arthrocelia_CellFree_3


title: Mycelia, CellFree, 3

description: Library name: Mycelia_CellFree_3


title: Arthrocelia, CellFree, 2

description: Library name: Arthrocelia_CellFree_2


title: Arthroconidia, CellFree, 1

description: Library name: Arthroconidia_CellFree_1


title: Arthroconidia, CellFree, 2

description: Library name: Arthroconidia_CellFree_2


title: Arthrocelia, CellFree, 1

description: Library name: Arthrocelia_CellFree_1


title: Mycelia, 3

description: Library name: Mycelia_3


title: Spherule, 1

description: Library name: Spherule_1


title: Mycelia, 2

description: Library name: Mycelia_2


title: Arthroconidia, 3

description: Library name: Arthroconidia_3


title: Control, Arthrocelia, CellFree, RiboMarker

description: Library name: Control_Arthrocelia_CellFree_RiboMarker

organism: unidentified


title: Mycelia, 1

description: Library name: Mycelia_1


title: Arthroconidia, 2

description: Library name: Arthroconidia_2


title: Arthrocelia, 1

description: Library name: Arthrocelia_1


title: Arthrocelia, 2

description: Library name: Arthrocelia_2


title: Mycelia, CellFree, 1

description: Library name: Mycelia_CellFree_1


title: Arthrocelia, 3

description: Library name: Arthrocelia_3


title: Control, Spherule, CellFree, RiboMarker

description: Library name: Control_Spherule_CellFree_RiboMarker


title: Control, Mycelia, CellFree

description: Library name: Control_Mycelia_CellFree


title: Control, Spherule, CellFree

description: Library name: Control_Spherule_CellFree


title: Control, Mycelia, CellFree, RiboMarker

description: Library name: Control_Mycelia_CellFree_RiboMarker


title: Control, Arthroconidia, CellFree, RiboMarker

description: Library name: Control_Arthroconidia_CellFree_RiboMarker


title: Control, Spherule, Exosome, RiboMarker

description: Library name: Control_Spherule_Exosome_RiboMarker


title: Arthroconidia, 1

description: Library name: Arthroconidia_1


title: Control, Arthrocelia, CellFree

description: Library name: Control_Arthrocelia_CellFree


title: Control, Mycelia, Exosome, RiboMarker

description: Library name: Control_Mycelia_Exosome_RiboMarker


title: Spherule, 2

description: Library name: Spherule_2


title: Control, Arthroconidia, CellFree

description: Library name: Control_Arthroconidia_CellFree


title: Control, Mycelia, Exosome

description: Library name: Control_Mycelia_Exosome


title: Control, Arthroconidia, Exosome, RiboMarker

description: Library name: Control_Arthroconidia_Exosome_RiboMarker


title: Control, Spherule, Exosome

description: Library name: Control_Spherule_Exosome


title: Control, Arthrocelia, Exosome

description: Library name: Control_Arthrocelia_Exosome


title: Control, Arhtrocelia, Exosome, RiboMarker

description: Library name: Control_Arhtrocelia_Exosome_RiboMarker


title: TSq6

status: Public on Feb 25 2026

city: Voutes

first: Eliza

last: Tsitoura

state: Crete

address: Voutes 70013, Heraklion, Greece

department: Medical School

country: Greece

institute: University of Crete

description: Library name: Sample 20

data_processing:
Base calling was performed using bcl2fastq software.
Fastq files were mapped to the Genome Reference Consortium Human Build 38 (GRCh38), using a two-step alignment process. Firstly, reads were mapped with hisat2, using default parameters. Next, the unmapped reads were mapped with bowtie2 using the --local and --very-sensitive parameters.
Counting the reads on the 3’ UTRs was performed with metaseqR2  and were normalized with DESEQ. For the differential expression analysis, we employed the PANDORA algorithm within the metaseqR2 package by integrating the DESEQ, DESEQ2, edgeR, limma, NBPSeq, and NOISeq algorithms. Differentially expressed genes were identified based on a meta p-value threshold of < 0.05 and an absolute log2 fold change > 0.58.
Assembly: hg38
Supplementary files format and content: Tab-delimited files containing DESeq normalized counts for each Ensembl gene for Quant-Seq data.

organism: Homo sapiens

source_name: Bronchoalveolar Lavage fluid cells

extract_protocol:
Total RNA was isolated using the mirVanaTM miRNA iolation kit (Ambion) with minor modifications. 350μl of TriReagent was used for cell lysis and storage of samples, followed by addition of 350μl of mirVana cell lysis solution and 35μl of mirVana miRNA additive. All further steps for the isolation of total RNA were performed as recommended by the manufacturer. Quality and quantity of isolated RNA was assessed by agarose gel electrophoresis and spectrophotometry (Nanodrop) respectively.
For library preparation, the QuantSeq 3’ mRNA-Seq V2 Library Prep Kit FWD with UDI (Lexogen) was used according to manufacturer’s instructions. Briefly, 150-400 ng of RNA from each sample were used for 1 st strand synthesis, followed by RNA template removal. 2 nd strand synthesis was initiated by random primers containing compatible linker sequences at their 5’ end. In-line barcodes were introduced during second-strand synthesis, followed by magnetic bead-based purification. The resulting products were amplified for up to 15 cycles and re-purified. Library quality was assessed using the Agilent Tapestation 4150 and the High Sensitivity D1000 assay kit, while quantity was assessed using the Invitrogen Qubit 4 Fluorometer and the Invitrogen Qubit dsDNA HS Assay. The quantified libraries were pooled equimolarly, and a total of 25ng were used for Adapter Conversion PCR Amplification using the Universal Library Conversion Kit (App-A), Version: V1.0 (MGI Tech Co., Ltd.), following the Universal Library Conversion Kit (App-A) User Manual (Version: A3).

treatment_protocol: No treatment

value: Bronchoalveolar Lavage fluid cells

tag: disease state

value: resolved post-COVID-19 ILD


title: Control, Arthroconidia, Exosome

description: Library name: Control_Arthroconidia_Exosome


title: TSq7

description: Library name: Sample 21

value: IPF post COVID-19


title: TSq26

description: Library name: Sample 16

value: persistent post-COVID-19 ILD


title: TSq23

description: Library name: Sample 13

value: CPFE post-COVID-19


title: TSq4

description: Library name: Sample 18


title: TSq3

description: Library name: Sample 17


title: TSq19

description: Library name: Sample 9

value: SSC-ILD post-COVID-19


title: TSq22

description: Library name: Sample 12


title: TSq15

description: Library name: Sample 6


title: TSq2

description: Library name: Sample 10


title: TSq13

description: Library name: Sample 4


title: TSq1

description: Library name: Sample 1


title: TSq25

description: Library name: Sample 15


title: TSq11

description: Library name: Sample 3


title: TSq21

description: Library name: Sample 11


title: TSq16

description: Library name: Sample 7


title: TSq17

description: Library name: Sample 8


title: Hyalomma asiaticum whole body transcriptome, EC treatment, biol rep 1

status: Public on Feb 18 2026

city: Xinjiang

first: 马祯

last: 祯

state: Xinjiang Uygur  Autonomous Region

address: nongda east road 311

department: College of Veterinary Medicine

country: China

institute: Xinjiang Agricultural University

description: Library name: EC1

data_processing:
Raw sequencing data was first filtered by fastp (version 0.23.4), low-quality reads were discarded and the reads contaminated with adaptor sequences were trimmed. Clean Reads were further treated with in-house scripts to eliminate duplication bias introduced in library preparation and sequencing. In brief, clean reads were first clustered according to the UMI sequences, in which reads with the same UMI sequence were grouped into the same cluster. Reads in the same cluster were compared to each other by pairwise alignment, and then reads with sequence identity over 95% were extracted to a new sub-cluster. After all sub-clusters were generated, multiple sequence alignment was performed to get one consensus sequence for each sub-clusters. After these steps, any errors and biases introduced by PCR amplification or sequencing were eliminated. Then clean and deduplicated data were de novo assembled by Trinity (version 2.15.1) with default parameters (20). Sequencing reads were aligned back to the assembled transcripts for assessing the quality of the transcriptome assembly by using Bowtie2 (21). The longest transcripts of the same genes were screened as unigenes. For functional annotations of the unigenes, protein databases Nr, Uniprot, Pfam, eggNog, GO and KEGG were used. Unigenes differentially expressed between groups (S. aureus、E. coli and PBS) were identified using the edgeR package (version 3.12.1). A p-value cutoff of 0.05 and Fold-change cutoff of 2 were used to judge the statistical significance of gene expression differences. GO analysis and KEGG enrichment analysis for differentially expressed genes were both implemented by KOBAS software (version 2.1.1) with a p-value cutoff of 0.05 to judge statistically significant enrichment.
Assembly: Not applicable; de novo transcriptome assembly was performed.
Supplementary files format and content: Annotation.xlsx；gene_expression.xlsx；Trinity.fasta；Unigene.fasta

organism: Hyalomma asiaticum

source_name: Ticks as a whole

growth_protocol: Unfed female ticks of similar body weight, from the same artificially reared batch at two weeks post-molting, were selected as the target samples for bacterial stress experiments. To minimize the impact of environmental microorganisms on the tick samples, their body surfaces were cleaned thoroughly. Briefly, Each tick was immersed in sterilized PBS and subjected to shaking for 15 seconds, followed by transfer to a 75% ethanol solution for an additional 15 seconds with agitation. Subsequently, the ticks were rinsed three times with ddH2O with agitation applied during each rinse. Finally, the cleaned ticks were placed on sterilized absorbent paper for surface drying. Injections of S. aureus and E. coli into unfed female ticks of Amblyomma americanum are described previously . Briefly, unfed female ticks were injected using a precision microsyringe (Hamilton Bonaduz, Switzerland) with a 10⁷ CFU/ml dilution of S. aureus or E. coli on the right side, between the fourth coxal segments, at a volume of 0.5 µl per tick. Immediately after completing the injection procedure, the injection site was sealed with a minimal amount of sterile Vaseline to prevent hemolymph leakage. After 24 h post-injection, ten individuals were randomly selected from each group to be pooled. The PBS-injected group was designated as the negative control to establish baseline gene expression profiles for comparative analysis. Each treatment group, including the negative control group, comprised 10 unfed female adult ticks. Three biological replicates were included for each group. Ticks were immediately transferred to freezing tubes and immersed in liquid nitrogen for snap-freezing to preserve RNA integrity prior to RNA-Seq.

extract_protocol:
Total RNA was extracted from tick samples using TRIzol Reagent (Invitrogen, California, USA) according to the manufacturer's instructions. Following RNA extraction, DNA digestion was performed using DNase I (Thermo Fisher Scientific, Waltham, MA, USA) to eliminate any residual genomic DNA. The quality of the extracted RNAs was assessed by measuring the A260/A280 ratio with a NanodropTM OneC spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA). Additionally, RNA integrity was verified using either a Qsep 100 (BIOptic, New Taipei City, Taiwan, China) or an Agilent 2100 (Agilent Technologies, Santa Clara, CA, USA) instrument, ensuring the high-quality and integrity of the RNA samples for downstream applications.
For the preparation of stranded RNA sequencing libraries, 1 μg of total RNAs was utilized following the manufacturer's instructions for the KC-DigitalTM Stranded mRNA Library Prep Kit for Illumina® (Wuhan Seqhealth, China). This kit incorporates a unique molecular identifier (UMI) consisting of 8 random bases to label pre-amplified cDNA molecules, effectively eliminating duplication bias during the PCR and sequencing steps. Library products within the size range of 200-500 bps were enriched, accurately quantified, and subsequently sequenced on a NovaSeq 6000 (Illumina, San Diego, CA, USA) in PE150 mode, ensuring high-throughput and accurate sequencing results.

value: Ticks as a whole

tag: Sex

value: female


title: Hyalomma asiaticum whole body transcriptome, EC treatment, biol rep 2

description: Library name: EC2


title: TSq14

description: Library name: Sample 5


title: Hyalomma asiaticum whole body transcriptome, EC treatment, biol rep 3

description: Library name: EC3


title: TSq5

description: Library name: Sample 19


title: TSq10

description: Library name: Sample 2


title: Hyalomma asiaticum whole body transcriptome, PBS control, biol rep 3

description: Library name: PBS3


title: Hyalomma asiaticum whole body transcriptome, SA treatment, biol rep 1

description: Library name: SA1


title: TSq24

description: Library name: Sample 14


title: ss3_23_058s_P16_accepted_hits_sorted_deduplicated.bam

status: Public on Feb 16 2026

city: Huddinge

first: Lars

last: Muhl

address: Blickagången 6

department: MedH

country: Sweden

institute: Karolinska Institutet

description:
Library name: Single cell sample 522
Smart-seq3

data_processing:
Samples were de-multiplexed yielding single-cell fastq files that were quality-trimmed using Trim Galore and UMI were extracted using the UMI-tools package.
Reads were then mapped to the danio rerio reference genome GRCz11 using STAR and duplicates were removed using UMI-tools dedup based on identified UMI’s
Per cell and gene raw-count expression matrices were prepared using the featureCounts package
Counts data was processed and analyzed using Seurat and pagoda2 packages in R-software
Assembly: GRCz11
Supplementary files format and content: tab-deliminated txt file as expression matrix including non-normalized counts of all samples

organism: Danio rerio

source_name: meninges

extract_protocol:
3 brains per group were dissected and put in a buffer containing 0.5% Trypsin, 1mM EDTA, and 10U DNaseI (Promega) for 10 min at 30°C and shaken at 600rpm every 3 minutes until the BLECs were detached from the brain. Brains were removed, and the cells were centrifuged at 2000 rpm for 5 min. The pellet was washed and resuspended in PBS containing 3 % FCS and then filtered through a 40 µm nylon cell strainer. Cells were FACS-sorted into 384-well plates containing lysis buffer.
RNA libraries were prepared using the Smart-Seq3 protocol at SICOF Huddinge, Sweden.

value: meninges

value: Immune

tag: group

value: treated

tag: batch


title: ss3_23_058s_P17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 523
Smart-seq3


title: Hyalomma asiaticum whole body transcriptome, PBS control, biol rep 2

description: Library name: PBS2


title: Hyalomma asiaticum whole body transcriptome, PBS control, biol rep 1

description: Library name: PBS1


title: ss3_23_058s_P22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 525
Smart-seq3


title: Hyalomma asiaticum whole body transcriptome, SA treatment, biol rep 3

description: Library name: SA3


title: Hyalomma asiaticum whole body transcriptome, SA treatment, biol rep 2

description: Library name: SA2


title: ss3_23_058s_P14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 520
Smart-seq3


title: ss3_23_058s_P20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 524
Smart-seq3

value: Fibroblast


title: ss3_23_058s_O23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 512
Smart-seq3

value: Neuronal/Glia


title: ss3_23_058s_P13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 519
Smart-seq3


title: ss3_23_058s_P10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 516
Smart-seq3


title: ss3_23_058s_P09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 515
Smart-seq3


title: ss3_23_058s_P07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 513
Smart-seq3

value: Network


title: ss3_23_058s_P11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 517
Smart-seq3


title: ss3_23_058s_O18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 508
Smart-seq3


title: ss3_23_058s_P08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 514
Smart-seq3


title: ss3_23_058s_O20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 509
Smart-seq3


title: ss3_23_058s_O22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 511
Smart-seq3


title: ss3_23_058s_P12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 518
Smart-seq3


title: ss3_23_058s_O15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 505
Smart-seq3


title: ss3_23_058s_O16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 506
Smart-seq3


title: ss3_23_058s_O21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 510
Smart-seq3


title: ss3_23_058s_P15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 521
Smart-seq3


title: ss3_23_058s_O17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 507
Smart-seq3


title: ss3_23_058s_O11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 502
Smart-seq3


title: ss3_23_058s_O13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 503
Smart-seq3


title: ss3_23_058s_O14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 504
Smart-seq3


title: ss3_23_058s_O08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 499
Smart-seq3


title: ss3_23_058s_O10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 501
Smart-seq3


title: ss3_23_058s_O06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 498
Smart-seq3


title: ss3_23_058s_N21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 494
Smart-seq3


title: ss3_23_058s_N20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 493
Smart-seq3


title: ss3_23_058s_O03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 495
Smart-seq3


title: ss3_23_058s_O04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 496
Smart-seq3


title: ss3_23_058s_N18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 491
Smart-seq3


title: ss3_23_058s_O05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 497
Smart-seq3


title: ss3_23_058s_N17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 490
Smart-seq3


title: ss3_23_058s_N19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 492
Smart-seq3


title: ss3_23_058s_N15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 489
Smart-seq3


title: ss3_23_058s_N12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 486
Smart-seq3


title: ss3_23_058s_N14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 488
Smart-seq3


title: ss3_23_058s_O09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 500
Smart-seq3


title: ss3_23_058s_N13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 487
Smart-seq3


title: ss3_23_058s_N06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 482
Smart-seq3


title: ss3_23_058s_N08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 484
Smart-seq3


title: ss3_23_058s_M23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 480
Smart-seq3


title: ss3_23_058s_N05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 481
Smart-seq3


title: ss3_23_058s_N10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 485
Smart-seq3


title: ss3_23_058s_M20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 477
Smart-seq3


title: ss3_23_058s_M21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 478
Smart-seq3


title: ss3_23_058s_M17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 475
Smart-seq3


title: ss3_23_058s_N07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 483
Smart-seq3


title: ss3_23_058s_M18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 476
Smart-seq3


title: ss3_23_058s_M12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 472
Smart-seq3


title: ss3_23_058s_M15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 474
Smart-seq3


title: ss3_23_058s_M11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 471
Smart-seq3


title: ss3_23_058s_M13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 473
Smart-seq3


title: ss3_23_058s_M10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 470
Smart-seq3


title: ss3_23_058s_M09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 469
Smart-seq3


title: ss3_23_058s_M08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 468
Smart-seq3


title: ss3_23_058s_M03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 464
Smart-seq3


title: ss3_23_058s_L24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 463
Smart-seq3


title: ss3_23_058s_M07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 467
Smart-seq3


title: ss3_23_058s_M04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 465
Smart-seq3


title: ss3_23_058s_M06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 466
Smart-seq3


title: ss3_23_058s_L19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 460
Smart-seq3


title: ss3_23_058s_L18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 459
Smart-seq3


title: ss3_23_058s_L15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 456
Smart-seq3


title: ss3_23_058s_L21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 461
Smart-seq3


title: ss3_23_058s_L17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 458
Smart-seq3


title: ss3_23_058s_L14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 455
Smart-seq3


title: ss3_23_058s_L13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 454
Smart-seq3


title: ss3_23_058s_L11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 452
Smart-seq3


title: ss3_23_058s_L12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 453
Smart-seq3


title: ss3_23_058s_L09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 450
Smart-seq3


title: ss3_23_058s_L22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 462
Smart-seq3


title: ss3_23_058s_L10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 451
Smart-seq3


title: ss3_23_058s_L06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 447
Smart-seq3


title: ss3_23_058s_L16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 457
Smart-seq3


title: ss3_23_058s_M22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 479
Smart-seq3


title: ss3_23_058s_L03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 445
Smart-seq3


title: ss3_23_058s_K23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 442
Smart-seq3


title: ss3_23_058s_L02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 444
Smart-seq3


title: ss3_23_058s_K24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 443
Smart-seq3


title: ss3_23_058s_L07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 448
Smart-seq3


title: ss3_23_058s_L04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 446
Smart-seq3


title: ss3_23_058s_K19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 439
Smart-seq3


title: ss3_23_058s_L08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 449
Smart-seq3


title: ss3_23_058s_K20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 440
Smart-seq3


title: ss3_23_058s_K18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 438
Smart-seq3


title: ss3_23_058s_K13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 433
Smart-seq3


title: ss3_23_058s_K22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 441
Smart-seq3


title: ss3_23_058s_K16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 436
Smart-seq3


title: ss3_23_058s_K17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 437
Smart-seq3


title: ss3_23_058s_K14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 434
Smart-seq3


title: ss3_23_058s_K12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 432
Smart-seq3


title: ss3_23_058s_K09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 430
Smart-seq3


title: ss3_23_058s_K15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 435
Smart-seq3


title: ss3_23_058s_K11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 431
Smart-seq3


title: ss3_23_058s_K05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 426
Smart-seq3


title: ss3_23_058s_K06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 427
Smart-seq3


title: ss3_23_058s_J23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 422
Smart-seq3


title: ss3_23_058s_K02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 424
Smart-seq3


title: ss3_23_058s_K04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 425
Smart-seq3


title: ss3_23_058s_J19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 420
Smart-seq3


title: ss3_23_058s_K08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 429
Smart-seq3


title: ss3_23_058s_K07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 428
Smart-seq3


title: ss3_23_058s_J20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 421
Smart-seq3


title: ss3_23_058s_J18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 419
Smart-seq3


title: ss3_23_058s_J16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 417
Smart-seq3


title: ss3_23_058s_J15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 416
Smart-seq3


title: ss3_23_058s_J08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 410
Smart-seq3


title: ss3_23_058s_J12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 413
Smart-seq3


title: ss3_23_058s_J24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 423
Smart-seq3


title: ss3_23_058s_J14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 415
Smart-seq3


title: ss3_23_058s_J06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 408
Smart-seq3


title: ss3_23_058s_J07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 409
Smart-seq3


title: ss3_23_058s_J03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 406
Smart-seq3


title: ss3_23_058s_J04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 407
Smart-seq3


title: ss3_23_058s_J09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 411
Smart-seq3


title: ss3_23_058s_J02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 405
Smart-seq3


title: ss3_23_058s_I24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 404
Smart-seq3


title: ss3_23_058s_J13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 414
Smart-seq3


title: ss3_23_058s_J17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 418
Smart-seq3


title: ss3_23_058s_J10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 412
Smart-seq3


title: ss3_23_058s_I22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 403
Smart-seq3


title: ss3_23_058s_I16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 398
Smart-seq3


title: ss3_23_058s_I17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 399
Smart-seq3


title: ss3_23_058s_I21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 402
Smart-seq3


title: ss3_23_058s_I20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 401
Smart-seq3


title: ss3_23_058s_I19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 400
Smart-seq3


title: ss3_23_058s_I13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 395
Smart-seq3


title: ss3_23_058s_I14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 396
Smart-seq3


title: ss3_23_058s_I15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 397
Smart-seq3


title: ss3_23_058s_I10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 393
Smart-seq3


title: ss3_23_058s_I12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 394
Smart-seq3


title: ss3_23_058s_I08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 391
Smart-seq3


title: ss3_23_058s_I04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 389
Smart-seq3


title: ss3_23_058s_I05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 390
Smart-seq3


title: ss3_23_058s_I02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 387
Smart-seq3


title: ss3_23_058s_I03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 388
Smart-seq3


title: ss3_23_058s_H20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 382
Smart-seq3


title: ss3_23_058s_H21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 383
Smart-seq3


title: ss3_23_058s_H17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 379
Smart-seq3


title: ss3_23_058s_I09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 392
Smart-seq3


title: ss3_23_058s_H19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 381
Smart-seq3


title: ss3_23_058s_H22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 384
Smart-seq3


title: ss3_23_058s_H14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 376
Smart-seq3


title: ss3_23_058s_H15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 377
Smart-seq3


title: ss3_23_058s_H12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 374
Smart-seq3


title: ss3_23_058s_H06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 368
Smart-seq3


title: ss3_23_058s_H23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 385
Smart-seq3


title: ss3_23_058s_H11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 373
Smart-seq3


title: ss3_23_058s_H24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 386
Smart-seq3


title: ss3_23_058s_H10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 372
Smart-seq3


title: ss3_23_058s_H07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 369
Smart-seq3


title: ss3_23_058s_H05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 367
Smart-seq3


title: ss3_23_058s_G24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 364
Smart-seq3


title: ss3_23_058s_G23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 363
Smart-seq3


title: ss3_23_058s_H08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 370
Smart-seq3


title: ss3_23_058s_H02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 365
Smart-seq3


title: ss3_23_058s_G22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 362
Smart-seq3


title: ss3_23_058s_H04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 366
Smart-seq3


title: ss3_23_058s_H18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 380
Smart-seq3


title: ss3_23_058s_G19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 360
Smart-seq3


title: ss3_23_058s_G18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 359
Smart-seq3


title: ss3_23_058s_H16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 378
Smart-seq3


title: ss3_23_058s_H09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 371
Smart-seq3


title: ss3_23_058s_G21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 361
Smart-seq3


title: ss3_23_058s_G16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 357
Smart-seq3


title: ss3_23_058s_G17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 358
Smart-seq3


title: ss3_23_058s_G15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 356
Smart-seq3


title: ss3_23_058s_G13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 354
Smart-seq3


title: ss3_23_058s_H13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 375
Smart-seq3


title: ss3_23_058s_G12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 353
Smart-seq3


title: ss3_23_058s_G10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 351
Smart-seq3


title: ss3_23_058s_G14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 355
Smart-seq3


title: ss3_23_058s_G09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 350
Smart-seq3


title: ss3_23_058s_G11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 352
Smart-seq3


title: ss3_23_058s_G05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 348
Smart-seq3


title: ss3_23_058s_F21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 345
Smart-seq3


title: ss3_23_058s_F22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 346
Smart-seq3


title: ss3_23_058s_F20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 344
Smart-seq3


title: ss3_23_058s_F19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 343
Smart-seq3


title: ss3_23_058s_F15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 339
Smart-seq3


title: ss3_23_058s_F04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 330
Smart-seq3


title: ss3_23_058s_F16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 340
Smart-seq3


title: ss3_23_058s_F07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 333
Smart-seq3


title: ss3_23_058s_F17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 341
Smart-seq3


title: ss3_23_058s_F08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 334
Smart-seq3


title: ss3_23_058s_G07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 349
Smart-seq3


title: ss3_23_058s_F09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 335
Smart-seq3


title: ss3_23_058s_F24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 347
Smart-seq3


title: ss3_23_058s_F13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 338
Smart-seq3


title: ss3_23_058s_F03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 329
Smart-seq3


title: ss3_23_058s_F18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 342
Smart-seq3


title: ss3_23_058s_F10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 336
Smart-seq3


title: ss3_23_058s_F11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 337
Smart-seq3


title: ss3_23_058s_E21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 325
Smart-seq3


title: ss3_23_058s_E19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 323
Smart-seq3


title: ss3_23_058s_F06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 332
Smart-seq3


title: ss3_23_058s_F05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 331
Smart-seq3


title: ss3_23_058s_E23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 326
Smart-seq3


title: ss3_23_058s_E24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 327
Smart-seq3


title: ss3_23_058s_F02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 328
Smart-seq3


title: ss3_23_058s_E17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 321
Smart-seq3


title: ss3_23_058s_E18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 322
Smart-seq3


title: ss3_23_058s_E16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 320
Smart-seq3


title: ss3_23_058s_E13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 317
Smart-seq3


title: ss3_23_058s_E14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 318
Smart-seq3


title: ss3_23_058s_E11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 315
Smart-seq3


title: ss3_23_058s_E12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 316
Smart-seq3


title: ss3_23_058s_E09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 313
Smart-seq3


title: ss3_23_058s_E07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 311
Smart-seq3


title: ss3_23_058s_E10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 314
Smart-seq3


title: ss3_23_058s_D19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 306
Smart-seq3


title: ss3_23_058s_E06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 310
Smart-seq3


title: ss3_23_058s_E20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 324
Smart-seq3


title: ss3_23_058s_D22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 308
Smart-seq3


title: ss3_23_058s_E15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 319
Smart-seq3


title: ss3_23_058s_E08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 312
Smart-seq3


title: ss3_23_058s_D17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 304
Smart-seq3


title: ss3_23_058s_D20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 307
Smart-seq3


title: ss3_23_058s_D16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 303
Smart-seq3


title: ss3_23_058s_D14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 301
Smart-seq3


title: ss3_23_058s_D08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 296
Smart-seq3


title: ss3_23_058s_D15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 302
Smart-seq3


title: ss3_23_058s_D13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 300
Smart-seq3


title: ss3_23_058s_D07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 295
Smart-seq3


title: ss3_23_058s_D23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 309
Smart-seq3


title: ss3_23_058s_D11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 298
Smart-seq3


title: ss3_23_058s_D12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 299
Smart-seq3


title: ss3_23_058s_D09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 297
Smart-seq3


title: ss3_23_058s_C23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 291
Smart-seq3


title: ss3_23_058s_C21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 290
Smart-seq3


title: ss3_23_058s_D06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 294
Smart-seq3


title: ss3_23_058s_C18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 288
Smart-seq3


title: ss3_23_058s_C19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 289
Smart-seq3


title: ss3_23_058s_C17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 287
Smart-seq3


title: ss3_23_058s_C14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 284
Smart-seq3


title: ss3_23_058s_C12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 282
Smart-seq3


title: ss3_23_058s_C15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 285
Smart-seq3


title: ss3_23_058s_C11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 281
Smart-seq3


title: ss3_23_058s_C13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 283
Smart-seq3


title: ss3_23_058s_C09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 279
Smart-seq3


title: ss3_23_058s_C07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 277
Smart-seq3


title: ss3_23_058s_C08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 278
Smart-seq3


title: ss3_23_058s_B20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 271
Smart-seq3


title: ss3_23_058s_C24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 292
Smart-seq3


title: ss3_23_058s_B23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 274
Smart-seq3


title: ss3_23_058s_C16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 286
Smart-seq3


title: ss3_23_058s_B21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 272
Smart-seq3


title: ss3_23_058s_B22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 273
Smart-seq3


title: ss3_23_058s_D02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 293
Smart-seq3


title: ss3_23_058s_C04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 275
Smart-seq3


title: ss3_23_058s_D18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 305
Smart-seq3


title: ss3_23_058s_B15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 266
Smart-seq3


title: ss3_23_058s_B14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 265
Smart-seq3


title: ss3_23_058s_B16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 267
Smart-seq3


title: ss3_23_058s_C10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 280
Smart-seq3


title: ss3_23_058s_B17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 268
Smart-seq3


title: ss3_23_058s_B11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 262
Smart-seq3


title: ss3_23_058s_C05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 276
Smart-seq3


title: ss3_23_058s_B09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 260
Smart-seq3


title: ss3_23_058s_B10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 261
Smart-seq3


title: ss3_23_058s_B07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 258
Smart-seq3


title: ss3_23_058s_A24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 256
Smart-seq3


title: ss3_23_058s_B12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 263
Smart-seq3


title: ss3_23_058s_B08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 259
Smart-seq3


title: ss3_23_058s_B05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 257
Smart-seq3


title: ss3_23_058s_B18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 269
Smart-seq3


title: ss3_23_058s_A23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 255
Smart-seq3


title: ss3_23_058s_B13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 264
Smart-seq3


title: ss3_23_058s_B19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 270
Smart-seq3


title: ss3_23_058s_A16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 251
Smart-seq3


title: ss3_23_058s_A21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 253
Smart-seq3


title: ss3_23_058s_A13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 248
Smart-seq3


title: ss3_23_058s_A15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 250
Smart-seq3


title: ss3_23_058s_A18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 252
Smart-seq3


title: ss3_23_058s_A22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 254
Smart-seq3


title: ss3_23_058s_A11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 246
Smart-seq3


title: ss3_23_058s_A10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 245
Smart-seq3


title: ss3_23_058s_A12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 247
Smart-seq3


title: ss3_23_056s_P20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 243
Smart-seq3

value: control


title: ss3_23_056s_P22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 244
Smart-seq3


title: ss3_23_058s_A14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 249
Smart-seq3


title: ss3_23_056s_P15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 239
Smart-seq3


title: ss3_23_056s_P19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 242
Smart-seq3


title: ss3_23_056s_P17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 241
Smart-seq3


title: ss3_23_056s_P16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 240
Smart-seq3


title: ss3_23_056s_P08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 237
Smart-seq3


title: ss3_23_056s_P04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 236
Smart-seq3


title: ss3_23_056s_P14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 238
Smart-seq3


title: ss3_23_056s_O23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 232
Smart-seq3


title: ss3_23_056s_P03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 235
Smart-seq3


title: ss3_23_056s_P02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 234
Smart-seq3


title: ss3_23_056s_O22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 231
Smart-seq3


title: ss3_23_056s_O17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 229
Smart-seq3


title: ss3_23_056s_O12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 225
Smart-seq3

value: BLEC


title: ss3_23_056s_N22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 220
Smart-seq3


title: ss3_23_056s_O03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 223
Smart-seq3


title: ss3_23_056s_O15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 227
Smart-seq3


title: ss3_23_056s_O16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 228
Smart-seq3


title: ss3_23_056s_N23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 221
Smart-seq3


title: ss3_23_056s_N19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 217
Smart-seq3


title: ss3_23_056s_N14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 212
Smart-seq3


title: ss3_23_056s_N21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 219
Smart-seq3


title: ss3_23_056s_O04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 224
Smart-seq3


title: ss3_23_056s_N20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 218
Smart-seq3


title: ss3_23_056s_O21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 230
Smart-seq3


title: ss3_23_056s_N16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 214
Smart-seq3


title: ss3_23_056s_P01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 233
Smart-seq3


title: ss3_23_056s_N03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 207
Smart-seq3


title: ss3_23_056s_N12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 211
Smart-seq3


title: ss3_23_056s_N15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 213
Smart-seq3


title: ss3_23_056s_M23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 204
Smart-seq3


title: ss3_23_056s_N01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 206
Smart-seq3


title: ss3_23_056s_N09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 210
Smart-seq3


title: ss3_23_056s_N05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 209
Smart-seq3


title: ss3_23_056s_N17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 215
Smart-seq3


title: ss3_23_056s_O14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 226
Smart-seq3


title: ss3_23_056s_N04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 208
Smart-seq3


title: ss3_23_056s_M22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 203
Smart-seq3


title: ss3_23_056s_M24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 205
Smart-seq3


title: ss3_23_056s_M19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 201
Smart-seq3


title: ss3_23_056s_M18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 200
Smart-seq3


title: ss3_23_056s_M16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 198
Smart-seq3


title: ss3_23_056s_M17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 199
Smart-seq3


title: ss3_23_056s_N18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 216
Smart-seq3


title: ss3_23_056s_M20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 202
Smart-seq3


title: ss3_23_056s_M14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 196
Smart-seq3


title: ss3_23_056s_M15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 197
Smart-seq3


title: ss3_23_056s_M12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 195
Smart-seq3


title: ss3_23_056s_L24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 188
Smart-seq3


title: ss3_23_056s_M10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 194
Smart-seq3


title: ss3_23_056s_M01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 189
Smart-seq3


title: ss3_23_056s_M09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 193
Smart-seq3


title: ss3_23_056s_L22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 186
Smart-seq3


title: ss3_23_056s_M02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 190
Smart-seq3


title: ss3_23_056s_L21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 185
Smart-seq3


title: ss3_23_056s_L19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 183
Smart-seq3


title: ss3_23_056s_L20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 184
Smart-seq3


title: ss3_23_056s_M03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 191
Smart-seq3


title: ss3_23_056s_M04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 192
Smart-seq3


title: ss3_23_056s_L16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 182
Smart-seq3


title: ss3_23_056s_O01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 222
Smart-seq3


title: ss3_23_056s_L15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 181
Smart-seq3


title: ss3_23_056s_L02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 174
Smart-seq3


title: ss3_23_056s_L14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 180
Smart-seq3


title: ss3_23_056s_L08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 178
Smart-seq3


title: ss3_23_056s_L13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 179
Smart-seq3


title: ss3_23_056s_L04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 176
Smart-seq3


title: ss3_23_056s_L23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 187
Smart-seq3


title: ss3_23_056s_L03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 175
Smart-seq3


title: ss3_23_056s_L01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 173
Smart-seq3


title: ss3_23_056s_K22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 171
Smart-seq3


title: ss3_23_056s_K16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 168
Smart-seq3


title: ss3_23_056s_K17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 169
Smart-seq3


title: ss3_23_056s_K18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 170
Smart-seq3


title: ss3_23_056s_K23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 172
Smart-seq3


title: ss3_23_056s_K14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 166
Smart-seq3


title: ss3_23_056s_K15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 167
Smart-seq3


title: ss3_23_056s_K10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 164
Smart-seq3


title: ss3_23_056s_K07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 162
Smart-seq3


title: ss3_23_056s_L07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 177
Smart-seq3


title: ss3_23_056s_K06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 161
Smart-seq3


title: ss3_23_056s_K13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 165
Smart-seq3


title: ss3_23_056s_K04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 159
Smart-seq3


title: ss3_23_056s_J24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 156
Smart-seq3


title: ss3_23_056s_K05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 160
Smart-seq3


title: ss3_23_056s_K03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 158
Smart-seq3


title: ss3_23_056s_J20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 153
Smart-seq3


title: ss3_23_056s_J18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 152
Smart-seq3


title: ss3_23_056s_J22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 155
Smart-seq3


title: ss3_23_056s_J21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 154
Smart-seq3


title: ss3_23_056s_K01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 157
Smart-seq3


title: ss3_23_056s_J16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 150
Smart-seq3


title: ss3_23_056s_J15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 149
Smart-seq3


title: ss3_23_056s_J10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 147
Smart-seq3


title: ss3_23_056s_J05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 145
Smart-seq3


title: ss3_23_056s_K08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 163
Smart-seq3


title: ss3_23_056s_J14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 148
Smart-seq3


title: ss3_23_056s_J17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 151
Smart-seq3


title: ss3_23_056s_I22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 139
Smart-seq3


title: ss3_23_056s_J02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 142
Smart-seq3


title: ss3_23_056s_J04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 144
Smart-seq3


title: ss3_23_056s_I19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 136
Smart-seq3


title: ss3_23_056s_J01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 141
Smart-seq3


title: ss3_23_056s_I16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 134
Smart-seq3


title: ss3_23_056s_I24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 140
Smart-seq3


title: ss3_23_056s_I18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 135
Smart-seq3


title: ss3_23_056s_I21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 138
Smart-seq3


title: ss3_23_056s_J06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 146
Smart-seq3


title: ss3_23_056s_I20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 137
Smart-seq3


title: ss3_23_056s_J03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 143
Smart-seq3


title: ss3_23_056s_I11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 129
Smart-seq3


title: ss3_23_056s_I15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 133
Smart-seq3


title: ss3_23_056s_I13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 131
Smart-seq3


title: ss3_23_056s_I10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 128
Smart-seq3


title: ss3_23_056s_I01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 122
Smart-seq3


title: ss3_23_056s_I08_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 126
Smart-seq3


title: ss3_23_056s_I03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 124
Smart-seq3


title: ss3_23_056s_H23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 121
Smart-seq3


title: ss3_23_056s_I12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 130
Smart-seq3


title: ss3_23_056s_I02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 123
Smart-seq3


title: ss3_23_056s_H20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 118
Smart-seq3


title: ss3_23_056s_I09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 127
Smart-seq3


title: ss3_23_056s_I14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 132
Smart-seq3


title: ss3_23_056s_I04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 125
Smart-seq3


title: ss3_23_056s_H15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 114
Smart-seq3


title: ss3_23_056s_H22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 120
Smart-seq3


title: ss3_23_056s_H16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 115
Smart-seq3


title: ss3_23_056s_H11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 113
Smart-seq3


title: ss3_23_056s_H21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 119
Smart-seq3


title: ss3_23_056s_G22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 106
Smart-seq3


title: DNase-seq from K562 (ENCLB497AXT)

status: Public on Feb 28 2026

first: ENCODE

last: DCC

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 18
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB497AXT

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

source_name: Homo sapiens K562 cell line

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: link

value: ENCBS275QRX at ENCODE; https://www.encodeproject.org/ENCBS275QRX/


title: ss3_23_056s_H09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 111
Smart-seq3


title: ss3_23_056s_H10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 112
Smart-seq3


title: ss3_23_056s_H05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 110
Smart-seq3


title: ss3_23_056s_H01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 108
Smart-seq3


title: ss3_23_056s_G23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 107
Smart-seq3


title: ss3_23_056s_G20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 104
Smart-seq3


title: ss3_23_056s_G21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 105
Smart-seq3


title: ss3_23_056s_G18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 102
Smart-seq3


title: ss3_23_056s_G16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 100
Smart-seq3


title: ss3_23_056s_G15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 99
Smart-seq3


title: ss3_23_056s_G17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 101
Smart-seq3


title: ss3_23_056s_G19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 103
Smart-seq3


title: ss3_23_056s_H17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 116
Smart-seq3


title: ss3_23_056s_G05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 96
Smart-seq3


title: ss3_23_056s_H19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 117
Smart-seq3


title: ss3_23_056s_G14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 98
Smart-seq3


title: ss3_23_056s_G04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 95
Smart-seq3


title: ss3_23_056s_G01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 93
Smart-seq3


title: ss3_23_056s_F23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 92
Smart-seq3


title: ss3_23_056s_G06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 97
Smart-seq3


title: ss3_23_056s_G03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 94
Smart-seq3


title: ss3_23_056s_F19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 89
Smart-seq3


title: ss3_23_056s_F20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 90
Smart-seq3


title: ss3_23_056s_F21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 91
Smart-seq3


title: ss3_23_056s_F16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 87
Smart-seq3


title: ss3_23_056s_F17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 88
Smart-seq3


title: ss3_23_056s_F15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 86
Smart-seq3


title: ss3_23_056s_H04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 109
Smart-seq3


title: ss3_23_056s_F12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 84
Smart-seq3


title: ss3_23_056s_F14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 85
Smart-seq3


title: ss3_23_056s_F01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 79
Smart-seq3


title: ss3_23_056s_E17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 74
Smart-seq3


title: ss3_23_056s_F04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 81
Smart-seq3


title: ss3_23_056s_F06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 83
Smart-seq3


title: ss3_23_056s_F05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 82
Smart-seq3


title: ss3_23_056s_E21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 77
Smart-seq3


title: ss3_23_056s_E13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 71
Smart-seq3


title: ss3_23_056s_E20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 76
Smart-seq3


title: ss3_23_056s_E12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 70
Smart-seq3


title: ss3_23_056s_E18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 75
Smart-seq3


title: ss3_23_056s_E14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 72
Smart-seq3


title: ss3_23_056s_E09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 69
Smart-seq3


title: ss3_23_056s_E05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 66
Smart-seq3


title: ss3_23_056s_D24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 61
Smart-seq3


title: ss3_23_056s_E24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 78
Smart-seq3


title: ss3_23_056s_D22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 60
Smart-seq3


title: ss3_23_056s_E04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 65
Smart-seq3


title: ss3_23_056s_E02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 63
Smart-seq3


title: ss3_23_056s_E03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 64
Smart-seq3


title: ss3_23_056s_D15_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 54
Smart-seq3


title: ss3_23_056s_E06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 67
Smart-seq3


title: ss3_23_056s_D07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 50
Smart-seq3


title: ss3_23_056s_E16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 73
Smart-seq3


title: ss3_23_056s_D09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 51
Smart-seq3


title: ss3_23_056s_D04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 47
Smart-seq3


title: ss3_23_056s_E01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 62
Smart-seq3


title: ss3_23_056s_F02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 80
Smart-seq3


title: ss3_23_056s_D16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 55
Smart-seq3


title: ss3_23_056s_D12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 52
Smart-seq3


title: ss3_23_056s_D01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 44
Smart-seq3


title: ss3_23_056s_D19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 57
Smart-seq3


title: ss3_23_056s_D17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 56
Smart-seq3


title: ss3_23_056s_C24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 43
Smart-seq3


title: ss3_23_056s_D21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 59
Smart-seq3


title: ss3_23_056s_C22_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 41
Smart-seq3


title: ss3_23_056s_C23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 42
Smart-seq3


title: ss3_23_056s_E07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 68
Smart-seq3


title: ss3_23_056s_D13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 53
Smart-seq3


title: ss3_23_056s_D06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 49
Smart-seq3


title: ss3_23_056s_C17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 37
Smart-seq3


title: ss3_23_056s_C21_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 40
Smart-seq3


title: ss3_23_056s_C19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 38
Smart-seq3


title: ss3_23_056s_D03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 46
Smart-seq3


title: ss3_23_056s_B24_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 30
Smart-seq3


title: ss3_23_056s_C02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 32
Smart-seq3


title: ss3_23_056s_D02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 45
Smart-seq3


title: ss3_23_056s_C20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 39
Smart-seq3


title: ss3_23_056s_C10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 34
Smart-seq3


title: ss3_23_056s_D05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 48
Smart-seq3


title: ss3_23_056s_B23_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 29
Smart-seq3


title: ss3_23_056s_C01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 31
Smart-seq3


title: ss3_23_056s_B20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 28
Smart-seq3


title: ss3_23_056s_B12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 21
Smart-seq3


title: ss3_23_056s_B19_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 27
Smart-seq3


title: ss3_23_056s_B09_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 18
Smart-seq3


title: ss3_23_056s_B07_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 17
Smart-seq3


title: ss3_23_056s_B18_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 26
Smart-seq3


title: ss3_23_056s_B16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 24
Smart-seq3


title: ss3_23_056s_B04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 14
Smart-seq3


title: ss3_23_056s_B06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 16
Smart-seq3


title: ss3_23_056s_B17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 25
Smart-seq3


title: ss3_23_056s_B11_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 20
Smart-seq3


title: ss3_23_056s_C12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 35
Smart-seq3


title: ss3_23_056s_B14_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 23
Smart-seq3


title: ss3_23_056s_B13_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 22
Smart-seq3


title: ss3_23_056s_B02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 12
Smart-seq3


title: ss3_23_056s_B01_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 11
Smart-seq3


title: ss3_23_056s_B10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 19
Smart-seq3


title: ss3_23_056s_B05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 15
Smart-seq3


title: ss3_23_056s_C06_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 33
Smart-seq3


title: ss3_23_056s_A17_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 9
Smart-seq3


title: ss3_23_056s_A20_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 10
Smart-seq3


title: ss3_23_056s_B03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 13
Smart-seq3


title: ss3_23_056s_A12_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 7
Smart-seq3


title: ss3_23_056s_A16_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 8
Smart-seq3


title: ss3_23_056s_A05_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 5
Smart-seq3


title: ss3_23_056s_A10_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 6
Smart-seq3


title: ss3_23_056s_A04_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 4
Smart-seq3


title: ss3_23_056s_A03_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 3
Smart-seq3


title: ss3_23_056s_A02_accepted_hits_sorted_deduplicated.bam

description:
Library name: Single cell sample 2
Smart-seq3