title: DNase-seq from activated T-cell (ENCLB947XCO)

description:
https://www.encodeproject.org/experiments/ENCSR524XMS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR524XMS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB947XCO

value: ENCBS517XBS at ENCODE; https://www.encodeproject.org/ENCBS517XBS/


title: Flow-FISH CRISPR screen from K562 (ENCLB254YJR)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB254YJR
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS338YAF at ENCODE; https://www.encodeproject.org/ENCBS338YAF/


title: Flow-FISH CRISPR screen from K562 (ENCLB747UYC)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB747UYC
size range: 200-210

value: ENCBS883IDU at ENCODE; https://www.encodeproject.org/ENCBS883IDU/


title: PRO-cap from left common carotid artery plus branches (ENCLB546UYL)

description:
https://www.encodeproject.org/experiments/ENCSR296MTV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left carotid artery.
experiment encode accession: ENCSR296MTV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB546UYL

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens left common carotid artery plus branches tissue

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS514PPF at ENCODE; https://www.encodeproject.org/ENCBS514PPF/


title: PRO-cap from left common carotid artery plus branches (ENCLB278COG)

description:
https://www.encodeproject.org/experiments/ENCSR296MTV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left carotid artery.
experiment encode accession: ENCSR296MTV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB278COG


title: PRO-cap from left ventricle myocardium (ENCLB276BHY)

description:
https://www.encodeproject.org/experiments/ENCSR294JPW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle myocardium inferior of heart.
experiment encode accession: ENCSR294JPW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB276BHY

source_name: Homo sapiens male adult (37 years) left ventricle myocardium tissue

value: left ventricle myocardium

value: male

value: 37 year

value: Michael Snyder

value: ENCBS600RQY at ENCODE; https://www.encodeproject.org/ENCBS600RQY/


title: PRO-cap from HEK293 (ENCLB170TKK)

description:
https://www.encodeproject.org/experiments/ENCSR520PUD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Embryonic kidney cell line.
experiment encode accession: ENCSR520PUD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB170TKK

source_name: Homo sapiens HEK293 cell line

value: cell line

value: female

value: embryonic

value: ENCBS581ZSV at ENCODE; https://www.encodeproject.org/ENCBS581ZSV/


title: PRO-cap from psoas muscle (ENCLB999OHM)

description:
https://www.encodeproject.org/experiments/ENCSR521BLL/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Psoas muscle.
experiment encode accession: ENCSR521BLL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB999OHM

source_name: Homo sapiens female adult (61 years) psoas muscle tissue

value: psoas muscle

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: ENCBS693ROW at ENCODE; https://www.encodeproject.org/ENCBS693ROW/


title: PRO-cap from HEK293 (ENCLB662BPO)

description:
https://www.encodeproject.org/experiments/ENCSR520PUD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Embryonic kidney cell line.
experiment encode accession: ENCSR520PUD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB662BPO

value: unknown

value: Haiyuan Yu, Cornell

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB195RGQ)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB195RGQ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS338YAF at ENCODE; https://www.encodeproject.org/ENCBS338YAF/


title: PRO-cap from left ventricle myocardium (ENCLB213SBO)

description:
https://www.encodeproject.org/experiments/ENCSR294JPW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle myocardium inferior of heart.
experiment encode accession: ENCSR294JPW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB213SBO

value: left ventricle myocardium

value: tissue

value: male

value: 37 year

value: Michael Snyder

value: ENCBS600RQY at ENCODE; https://www.encodeproject.org/ENCBS600RQY/


title: PRO-cap from heart left ventricle (ENCLB743PPC)

description:
https://www.encodeproject.org/experiments/ENCSR290MPW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR290MPW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB743PPC

source_name: Homo sapiens female adult (41 years) heart left ventricle tissue

value: heart left ventricle

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: ENCBS386LNK at ENCODE; https://www.encodeproject.org/ENCBS386LNK/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB373ZRY)

description:
https://www.encodeproject.org/experiments/ENCSR629CES/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR629CES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB373ZRY

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS412JXF at ENCODE; https://www.encodeproject.org/ENCBS412JXF/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB222YVR)

description:
https://www.encodeproject.org/experiments/ENCSR629CES/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR629CES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB222YVR

value: ENCBS533GCG at ENCODE; https://www.encodeproject.org/ENCBS533GCG/


title: Flow-FISH CRISPR screen from K562 (ENCLB925RTD)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB925RTD
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS883IDU at ENCODE; https://www.encodeproject.org/ENCBS883IDU/


title: PRO-cap from adrenal gland (ENCLB844GAD)

description:
https://www.encodeproject.org/experiments/ENCSR516YGD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR516YGD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB844GAD

source_name: Homo sapiens female adult (41 years) adrenal gland tissue

value: adrenal gland

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS885VYD at ENCODE; https://www.encodeproject.org/ENCBS885VYD/


title: PRO-cap from astrocyte (ENCLB647QCA)

description:
https://www.encodeproject.org/experiments/ENCSR516KII/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived astrocytes.
experiment encode accession: ENCSR516KII
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB647QCA

source_name: Homo sapiens male adult (53 years) astrocyte in vitro differentiated cells

value: astrocyte

value: in vitro differentiated cells

value: male

value: adult

value: Bradley Bernstein

value: ENCBS217MHK at ENCODE; https://www.encodeproject.org/ENCBS217MHK/


title: Control CRISPR screen from glutamatergic neuron (ENCLB484PTP)

description:
https://www.encodeproject.org/experiments/ENCSR284PQK/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR284PQK
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB484PTP

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using...

value: glutamatergic neuron

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS306RMO at ENCODE; https://www.encodeproject.org/ENCBS306RMO/


title: Control CRISPR screen from glutamatergic neuron (ENCLB327FIE)

description:
https://www.encodeproject.org/experiments/ENCSR284PQK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR284PQK
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB327FIE

value: ENCBS888BSL at ENCODE; https://www.encodeproject.org/ENCBS888BSL/


title: Flow-FISH CRISPR screen from K562 (ENCLB814HKO)

description:
https://www.encodeproject.org/experiments/ENCSR629LGG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR629LGG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB814HKO
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS883IDU at ENCODE; https://www.encodeproject.org/ENCBS883IDU/


title: proliferation CRISPR screen from A549 (ENCLB024HDD)

description:
https://www.encodeproject.org/experiments/ENCSR621FIC/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR621FIC
assay title: proliferation CRISPR screen
possible controls: ENCSR330GSS
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB024HDD
size range: 710-720

source_name: Homo sapiens A549 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: 58 year

value: Bing Ren, UCSD

tag: treatments

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS549MFH at ENCODE; https://www.encodeproject.org/ENCBS549MFH/


title: PRO-cap from astrocyte (ENCLB821SYF)

description:
https://www.encodeproject.org/experiments/ENCSR516KII/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PGP-1 derived astrocytes.
experiment encode accession: ENCSR516KII
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB821SYF

value: astrocyte

value: in vitro differentiated cells

value: adult

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS559GZV at ENCODE; https://www.encodeproject.org/ENCBS559GZV/


title: PRO-cap from neutrophil (ENCLB162RCJ)

description:
https://www.encodeproject.org/experiments/ENCSR282IJP/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neutrophils.
experiment encode accession: ENCSR282IJP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB162RCJ

source_name: Homo sapiens neutrophil primary cell

value: neutrophil

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS017TTY at ENCODE; https://www.encodeproject.org/ENCBS017TTY/


title: PRO-cap from adrenal gland (ENCLB862CUF)

description:
https://www.encodeproject.org/experiments/ENCSR516YGD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Adrenal gland.
experiment encode accession: ENCSR516YGD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB862CUF

value: adrenal gland

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS885VYD at ENCODE; https://www.encodeproject.org/ENCBS885VYD/


title: proliferation CRISPR screen from A549 (ENCLB546GDK)

description:
https://www.encodeproject.org/experiments/ENCSR621FIC/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR621FIC
assay title: proliferation CRISPR screen
possible controls: ENCSR330GSS
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB546GDK
size range: 710-720

value: cell line

value: male

value: adult

value: 58 year

value: Bing Ren, UCSD

value: ATCC

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS629DTH at ENCODE; https://www.encodeproject.org/ENCBS629DTH/


title: STARR-seq from A549 (ENCLB946CUB)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB946CUB
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM AZD2906 (agonist) for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: Tim Reddy, Duke

value: treatment_term_name:AZD2906; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS594XEH at ENCODE; https://www.encodeproject.org/ENCBS594XEH/


title: STARR-seq from A549 (ENCLB352JIW)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB352JIW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS239XHU at ENCODE; https://www.encodeproject.org/ENCBS239XHU/


title: DNase-seq from K562 (ENCLB470WMO)

description:
https://www.encodeproject.org/experiments/ENCSR621ZDQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR621ZDQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB470WMO
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens K562 cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS395HRY at ENCODE; https://www.encodeproject.org/ENCBS395HRY/


title: PRO-cap from heart left ventricle (ENCLB836LOB)

description:
https://www.encodeproject.org/experiments/ENCSR290MPW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR290MPW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB836LOB

value: heart left ventricle

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS386LNK at ENCODE; https://www.encodeproject.org/ENCBS386LNK/


title: PRO-cap from psoas muscle (ENCLB276JPO)

description:
https://www.encodeproject.org/experiments/ENCSR521BLL/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Psoas muscle.
experiment encode accession: ENCSR521BLL
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB276JPO

value: psoas muscle

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: ENCBS693ROW at ENCODE; https://www.encodeproject.org/ENCBS693ROW/


title: PRO-cap from neutrophil (ENCLB987GAU)

description:
https://www.encodeproject.org/experiments/ENCSR282IJP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neutrophils.
experiment encode accession: ENCSR282IJP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB987GAU

value: neutrophil

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS017TTY at ENCODE; https://www.encodeproject.org/ENCBS017TTY/


title: DNase-seq from HUDEP-2 (ENCLB516BRG)

description:
https://www.encodeproject.org/experiments/ENCSR620HHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR620HHG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB516BRG

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS864YAH at ENCODE; https://www.encodeproject.org/ENCBS864YAH/


title: STARR-seq from A549 (ENCLB527ZEF)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB527ZEF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:AZD2906; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS684YXH at ENCODE; https://www.encodeproject.org/ENCBS684YXH/


title: STARR-seq from A549 (ENCLB391DAG)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB391DAG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: ENCBS594XEH at ENCODE; https://www.encodeproject.org/ENCBS594XEH/


title: DNase-seq from T-cell (ENCLB168VOL)

description:
https://www.encodeproject.org/experiments/ENCSR619JBY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR619JBY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB168VOL

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: female

value: 33 year

value: AllCells

value: ENCBS361IED at ENCODE; https://www.encodeproject.org/ENCBS361IED/


title: STARR-seq from A549 (ENCLB936FKG)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB936FKG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: ENCBS239XHU at ENCODE; https://www.encodeproject.org/ENCBS239XHU/


title: STARR-seq from A549 (ENCLB082GQR)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB082GQR
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB659YNS)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB659YNS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS732LQK at ENCODE; https://www.encodeproject.org/ENCBS732LQK/


title: Flow-FISH CRISPR screen from K562 (ENCLB475WFC)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB475WFC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS108OXE at ENCODE; https://www.encodeproject.org/ENCBS108OXE/


title: Flow-FISH CRISPR screen from K562 (ENCLB278EEV)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB278EEV
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB090MRC)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB090MRC
size range: 200-210

value: adult

value: ENCBS275ZGF at ENCODE; https://www.encodeproject.org/ENCBS275ZGF/


title: STARR-seq from A549 (ENCLB159BQW)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB159BQW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:AZD2906; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS684YXH at ENCODE; https://www.encodeproject.org/ENCBS684YXH/


title: STARR-seq from A549 (ENCLB943OUD)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB943OUD
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB218DXA)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB218DXA
size range: 200-210

value: female


title: STARR-seq from A549 (ENCLB893RUO)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB893RUO
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB358WYQ)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB358WYQ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB127DQE)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB127DQE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB965TDG)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB965TDG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB451CAZ)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB451CAZ
size range: 200-210


title: STARR-seq from A549 (ENCLB120SWF)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB120SWF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: DNase-seq from HCT116 (ENCLB938UAL)

description:
https://www.encodeproject.org/experiments/ENCSR510GDB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR510GDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB938UAL

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS948XJQ at ENCODE; https://www.encodeproject.org/ENCBS948XJQ/


title: STARR-seq from A549 (ENCLB411FKX)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB411FKX
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: ENCBS594XEH at ENCODE; https://www.encodeproject.org/ENCBS594XEH/


title: DNase-seq from HCT116 (ENCLB982WQD)

description:
https://www.encodeproject.org/experiments/ENCSR510GDB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR510GDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB982WQD

value: ENCBS880TXW at ENCODE; https://www.encodeproject.org/ENCBS880TXW/


title: PRO-cap from gallbladder (ENCLB532XQA)

description:
https://www.encodeproject.org/experiments/ENCSR282COG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gallbladder.
experiment encode accession: ENCSR282COG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB532XQA

source_name: Homo sapiens male adult (40 years) gallbladder tissue

value: gallbladder

value: tissue

value: 40 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS796YDM at ENCODE; https://www.encodeproject.org/ENCBS796YDM/


title: Flow-FISH CRISPR screen from K562 (ENCLB160DTE)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB160DTE
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS108OXE at ENCODE; https://www.encodeproject.org/ENCBS108OXE/


title: PRO-cap from vagina (ENCLB270BQA)

description:
https://www.encodeproject.org/experiments/ENCSR280NVT/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Vagina.
experiment encode accession: ENCSR280NVT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB270BQA

source_name: Homo sapiens female adult (53 years) vagina tissue

value: vagina

value: female

value: GTEx

value: ENCBS904BDJ at ENCODE; https://www.encodeproject.org/ENCBS904BDJ/


title: STARR-seq from A549 (ENCLB410OLU)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB410OLU
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:AZD2906; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS594XEH at ENCODE; https://www.encodeproject.org/ENCBS594XEH/


title: DNase-seq from HCT116 (ENCLB373BLU)

description:
https://www.encodeproject.org/experiments/ENCSR510GDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR510GDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB373BLU

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS787RPA at ENCODE; https://www.encodeproject.org/ENCBS787RPA/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB392DYU)

description:
https://www.encodeproject.org/experiments/ENCSR160AWN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR160AWN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB392DYU

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: adult

value: 38 year

value: AllCells

value: ENCBS784EAN at ENCODE; https://www.encodeproject.org/ENCBS784EAN/


title: PRO-cap from vagina (ENCLB715FYU)

description:
https://www.encodeproject.org/experiments/ENCSR280NVT/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Vagina.
experiment encode accession: ENCSR280NVT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB715FYU

value: vagina

value: tissue

value: female

value: 53 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS904BDJ at ENCODE; https://www.encodeproject.org/ENCBS904BDJ/


title: STARR-seq from A549 (ENCLB253MBT)

description:
https://www.encodeproject.org/experiments/ENCSR282GET/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR282GET
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB253MBT
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:AZD2906; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS239XHU at ENCODE; https://www.encodeproject.org/ENCBS239XHU/


title: Control CRISPR screen from K562 (ENCLB339TRC)

description:
https://www.encodeproject.org/experiments/ENCSR501FEU/
***************
biological replicate number: 4
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR501FEU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB339TRC

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS301PKY at ENCODE; https://www.encodeproject.org/ENCBS301PKY/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB623CXO)

description:
https://www.encodeproject.org/experiments/ENCSR160AWN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR160AWN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB623CXO

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS956FTK at ENCODE; https://www.encodeproject.org/ENCBS956FTK/


title: Control CRISPR screen from K562 (ENCLB076DDH)

description:
https://www.encodeproject.org/experiments/ENCSR501FEU/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR501FEU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB076DDH

value: female

value: 53 year

value: ENCBS974GZB at ENCODE; https://www.encodeproject.org/ENCBS974GZB/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB980CQU)

description:
https://www.encodeproject.org/experiments/ENCSR160AWN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR160AWN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB980CQU

value: male

value: ENCBS099GUD at ENCODE; https://www.encodeproject.org/ENCBS099GUD/


title: Control CRISPR screen from K562 (ENCLB675LBI)

description:
https://www.encodeproject.org/experiments/ENCSR501FEU/
***************
biological replicate number: 3
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR501FEU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB675LBI

value: cell line

value: Tim Reddy, Duke

value: ATCC

value: ENCBS105LLM at ENCODE; https://www.encodeproject.org/ENCBS105LLM/


title: Flow-FISH CRISPR screen from K562 (ENCLB371CCJ)

description:
https://www.encodeproject.org/experiments/ENCSR618JKY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR618JKY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB371CCJ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS275ZGF at ENCODE; https://www.encodeproject.org/ENCBS275ZGF/


title: PRO-cap from left cardiac atrium (ENCLB233MWZ)

description:
https://www.encodeproject.org/experiments/ENCSR270EGA/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left atrium of heart.
experiment encode accession: ENCSR270EGA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB233MWZ

source_name: Homo sapiens male adult (37 years) left cardiac atrium tissue

value: left cardiac atrium

value: tissue

value: 37 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS905CRV at ENCODE; https://www.encodeproject.org/ENCBS905CRV/


title: Control CRISPR screen from K562 (ENCLB296LMO)

description:
https://www.encodeproject.org/experiments/ENCSR501FEU/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in K562 leukemia cells
experiment encode accession: ENCSR501FEU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB296LMO

value: female

value: 53 year

value: ENCBS152SVK at ENCODE; https://www.encodeproject.org/ENCBS152SVK/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB023MXI)

description:
https://www.encodeproject.org/experiments/ENCSR160AWN/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR160AWN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB023MXI

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS186JBR at ENCODE; https://www.encodeproject.org/ENCBS186JBR/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB485HZC)

description:
https://www.encodeproject.org/experiments/ENCSR616BQA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR616BQA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB485HZC

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-12 subunit beta for 1 hour

value: CD4-positive, alpha-beta T cell

value: adult

value: 26 year

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS933MFT at ENCODE; https://www.encodeproject.org/ENCBS933MFT/


title: PRO-cap from gallbladder (ENCLB720XLY)

description:
https://www.encodeproject.org/experiments/ENCSR282COG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Gallbladder.
experiment encode accession: ENCSR282COG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB720XLY

value: gallbladder

value: tissue

value: 40 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS796YDM at ENCODE; https://www.encodeproject.org/ENCBS796YDM/


title: PRO-cap from breast (ENCLB019STD)

description:
https://www.encodeproject.org/experiments/ENCSR500IHG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR500IHG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB019STD

source_name: Homo sapiens female adult (55 years) breast tissue

value: breast

value: female

value: 55 year

value: ENCBS207QLO at ENCODE; https://www.encodeproject.org/ENCBS207QLO/


title: PRO-cap from left cardiac atrium (ENCLB243OQI)

description:
https://www.encodeproject.org/experiments/ENCSR270EGA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left atrium of heart.
experiment encode accession: ENCSR270EGA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB243OQI

value: left cardiac atrium

value: male

value: 37 year

value: Michael Snyder

value: ENCBS905CRV at ENCODE; https://www.encodeproject.org/ENCBS905CRV/


title: PRO-cap from breast (ENCLB094HLD)

description:
https://www.encodeproject.org/experiments/ENCSR500IHG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Breast mammary.
experiment encode accession: ENCSR500IHG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB094HLD

value: adult


title: PRO-cap from liver (ENCLB955JRD)

description:
https://www.encodeproject.org/experiments/ENCSR269FMG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.
experiment encode accession: ENCSR269FMG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB955JRD

source_name: Homo sapiens female adult (53 years) liver tissue

value: liver

value: 53 year

value: ENCBS173OFM at ENCODE; https://www.encodeproject.org/ENCBS173OFM/


title: PRO-cap from liver (ENCLB031TQN)

description:
https://www.encodeproject.org/experiments/ENCSR269FMG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.
experiment encode accession: ENCSR269FMG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB031TQN

value: tissue


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB453AUH)

description:
https://www.encodeproject.org/experiments/ENCSR617VJH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR617VJH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB453AUH

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS250BYH at ENCODE; https://www.encodeproject.org/ENCBS250BYH/


title: PRO-cap from bronchial lymph node (ENCLB270THF)

description:
https://www.encodeproject.org/experiments/ENCSR266TET/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peribronchial lymph node.
experiment encode accession: ENCSR266TET
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB270THF

source_name: Homo sapiens female adult (63 years) bronchial lymph node tissue

value: bronchial lymph node

value: female

value: 63 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS588ODP at ENCODE; https://www.encodeproject.org/ENCBS588ODP/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB592QZV)

description:
https://www.encodeproject.org/experiments/ENCSR616AQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR616AQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB592QZV

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS907IDM at ENCODE; https://www.encodeproject.org/ENCBS907IDM/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB607TWR)

description:
https://www.encodeproject.org/experiments/ENCSR267DTS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR267DTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB607TWR

source_name: Homo sapiens male adult (26 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: male

value: 26 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS592XTB at ENCODE; https://www.encodeproject.org/ENCBS592XTB/


title: DNase-seq from immature natural killer cell (ENCLB187GCG)

description:
https://www.encodeproject.org/experiments/ENCSR615IPZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR615IPZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB187GCG

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell treated with 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS301WOW at ENCODE; https://www.encodeproject.org/ENCBS301WOW/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB207CNB)

description:
https://www.encodeproject.org/experiments/ENCSR267DTS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR267DTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB207CNB

source_name: Homo sapiens female adult (46 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: female

value: 46 year

value: ENCBS020FHU at ENCODE; https://www.encodeproject.org/ENCBS020FHU/


title: PRO-cap from bronchial lymph node (ENCLB435INX)

description:
https://www.encodeproject.org/experiments/ENCSR266TET/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peribronchial lymph node.
experiment encode accession: ENCSR266TET
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB435INX

value: bronchial lymph node

value: tissue

value: adult

value: 63 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS588ODP at ENCODE; https://www.encodeproject.org/ENCBS588ODP/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB799RQM)

description:
https://www.encodeproject.org/experiments/ENCSR267DTS/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR267DTS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB799RQM

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS388TWG at ENCODE; https://www.encodeproject.org/ENCBS388TWG/


title: DNase-seq from immature natural killer cell (ENCLB544SNU)

description:
https://www.encodeproject.org/experiments/ENCSR276SCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR276SCO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB544SNU

source_name: Homo sapiens immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: not collected

value: healthy

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS484SUW at ENCODE; https://www.encodeproject.org/ENCBS484SUW/


title: DNase-seq from activated B cell (ENCLB738DEO)

description:
https://www.encodeproject.org/experiments/ENCSR266PJC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR266PJC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB738DEO

source_name: Homo sapiens female adult (40 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: female

value: 40 year

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS896AMA at ENCODE; https://www.encodeproject.org/ENCBS896AMA/


title: DNase-seq from spleen (ENCLB506WCB)

description:
https://www.encodeproject.org/experiments/ENCSR157WNX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR157WNX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB506WCB

source_name: Homo sapiens female adult (61 years) spleen tissue

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: adult

value: 61 year

value: Shin Lin

value: ENCBS688ZPA at ENCODE; https://www.encodeproject.org/ENCBS688ZPA/


title: DNase-seq from activated B cell (ENCLB074CPM)

description:
https://www.encodeproject.org/experiments/ENCSR266PJC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR266PJC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB074CPM

value: primary cell

value: Stemcell Technologies

value: ENCBS865KLI at ENCODE; https://www.encodeproject.org/ENCBS865KLI/


title: PRO-cap from type B pancreatic cell (ENCLB938QMG)

description:
https://www.encodeproject.org/experiments/ENCSR262PWK/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived insulin producing beta-like cells.
experiment encode accession: ENCSR262PWK
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB938QMG

source_name: Homo sapiens female embryo (5 days) type B pancreatic in vitro differentiated cells

value: type B pancreatic cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS666XLD at ENCODE; https://www.encodeproject.org/ENCBS666XLD/


title: Flow-FISH CRISPR screen from K562 (ENCLB533FAH)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB533FAH
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS932LFF at ENCODE; https://www.encodeproject.org/ENCBS932LFF/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB238KGH)

description:
https://www.encodeproject.org/experiments/ENCSR616AQJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR616AQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB238KGH

value: primary cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS946GEH at ENCODE; https://www.encodeproject.org/ENCBS946GEH/


title: STARR-seq from A549 (ENCLB342GRX)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB342GRX
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM AZD9567 (agonist) for 4 hours

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:AZD9567; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS011DPI at ENCODE; https://www.encodeproject.org/ENCBS011DPI/


title: STARR-seq from A549 (ENCLB056FLZ)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB056FLZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ENCBS537VSR at ENCODE; https://www.encodeproject.org/ENCBS537VSR/


title: Flow-FISH CRISPR screen from K562 (ENCLB230FHY)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB230FHY
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford


title: PRO-cap from type B pancreatic cell (ENCLB948MBQ)

description:
https://www.encodeproject.org/experiments/ENCSR262PWK/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in H9 derived insulin producing beta-like cells.
experiment encode accession: ENCSR262PWK
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB948MBQ

value: type B pancreatic cell

value: in vitro differentiated cells

value: healthy

value: embryonic

value: 5 day

value: Haiyuan Yu, Cornell

value: Bradley Bernstein

value: ENCBS539PXA at ENCODE; https://www.encodeproject.org/ENCBS539PXA/


title: STARR-seq from A549 (ENCLB105BXY)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB105BXY
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC


title: STARR-seq from A549 (ENCLB815RPH)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB815RPH
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: treatment_term_name:AZD9567; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS011DPI at ENCODE; https://www.encodeproject.org/ENCBS011DPI/


title: STARR-seq from A549 (ENCLB114AVC)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB114AVC
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS214TYV at ENCODE; https://www.encodeproject.org/ENCBS214TYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB740POD)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB740POD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS785SOB at ENCODE; https://www.encodeproject.org/ENCBS785SOB/


title: STARR-seq from A549 (ENCLB947KKW)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB947KKW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS037TQT at ENCODE; https://www.encodeproject.org/ENCBS037TQT/


title: Flow-FISH CRISPR screen from K562 (ENCLB719LAD)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB719LAD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB229DIZ)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB229DIZ
size range: 200-210

value: ENCBS932LFF at ENCODE; https://www.encodeproject.org/ENCBS932LFF/


title: STARR-seq from A549 (ENCLB098LLL)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB098LLL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB685AFV)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB685AFV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB339MBK)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB339MBK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS537VSR at ENCODE; https://www.encodeproject.org/ENCBS537VSR/


title: STARR-seq from A549 (ENCLB658ZMP)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB658ZMP
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male


title: Flow-FISH CRISPR screen from K562 (ENCLB659RBQ)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB659RBQ
size range: 200-210

value: adult


title: STARR-seq from A549 (ENCLB043VMJ)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB043VMJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year


title: STARR-seq from A549 (ENCLB806ELJ)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB806ELJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke


title: DNase-seq from NK-92 (ENCLB881XMK)

description:
https://www.encodeproject.org/experiments/ENCSR612JUJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR612JUJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB881XMK

source_name: Homo sapiens NK-92 cell line

value: 50 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS076JWC at ENCODE; https://www.encodeproject.org/ENCBS076JWC/


title: STARR-seq from A549 (ENCLB761WZR)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB761WZR
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: treatment_term_name:AZD9567; treatment_type:chemical; duration:4; duration_units:hour;


title: STARR-seq from A549 (ENCLB133BLE)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB133BLE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS011DPI at ENCODE; https://www.encodeproject.org/ENCBS011DPI/


title: LUSC-IPF,Pt50,out,stroma_interface,DSP-1001660021451-G-D12

status: Public on Mar 02 2026

city: Okayama

first: Atsushi

last: Matsuoka

state: Okayama

address: 2-5-1 SHIKATA-CHO, KITAKU, OKAYAMA 700-8558 JAPAN

country: Japan

institute: Okayama University

description: Library name: DSP-1001660021451-G-D12

data_processing:
FASTQ files were converted into DCC files using GeoMx NGS Pipeline (v2.3.3.10).
Assembly: hg38
Supplementary files format and content: Hs_R_NGS_WTA_v1.0.pkc: PKC file
Library strategy: Spatial Transcriptomics

source_name: Lung squamous cell carcinoma associated with idiopathic pulmonary fibrosis

extract_protocol:
FFPE tissue sections were processed using the BOND RXm system (Leica Biosystems) for deparaffinization, antigen retrieval, and enzymatic digestion, following the GeoMx DSP Automated Slide Preparation User Manual (NanoString Technologies). ROIs were selected based on morphology markers, and slides were scanned using the GeoMx DSP to capture high-resolution images.
Hybridization was performed using the GeoMx Human Whole Transcriptome Atlas for Illumina Systems, targeting human protein-coding genes. UV light was applied to release oligonucleotide tags from selected ROIs, which were collected into 96-well plates. Libraries were constructed using the GeoMx Seq Code Pack: G & H Compatible with Illumina Systems (NanoString Technologies), amplified by PCR, purified with AMPure XP beads (Beckman Coulter), and quality-checked with TapeStation (Agilent Technologies). Sequencing was performed as 150 bp paired-end reads on an Illumina NovaSeq 6000, with depth proportional to total ROI area.

tag: tissue

tag: patientid

tag: smoker

value: yes

tag: uip in/out

value: out

value: Sq

tag: treatment

value: surgical resection

tag: slide name

tag: scan name

tag: panel

value: (v1.0) Human NGS Whole Transcriptome Atlas RNA

tag: segment

value: PanCK-

tag: aoi

tag: area

tag: nuclei


title: Flow-FISH CRISPR screen from K562 (ENCLB245VMS)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB245VMS
size range: 200-210

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

value: ENCBS932LFF at ENCODE; https://www.encodeproject.org/ENCBS932LFF/


title: STARR-seq from A549 (ENCLB380BWC)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB380BWC
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

tag: source

tag: treatments

tag: link

value: ENCBS037TQT at ENCODE; https://www.encodeproject.org/ENCBS037TQT/


title: proliferation CRISPR screen from K562 (ENCLB018ZKT)

description:
https://www.encodeproject.org/experiments/ENCSR157EQV/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR157EQV
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB018ZKT

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR dCas (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: cell line

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS390RGX at ENCODE; https://www.encodeproject.org/ENCBS390RGX/


title: PRO-cap from T-cell (ENCLB691BXB)

description:
https://www.encodeproject.org/experiments/ENCSR489FZB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.
experiment encode accession: ENCSR489FZB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB691BXB

source_name: Homo sapiens T-cell primary cell

value: T-cell

value: primary cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS041PZF at ENCODE; https://www.encodeproject.org/ENCBS041PZF/


title: PRO-cap from T-cell (ENCLB963HHI)

description:
https://www.encodeproject.org/experiments/ENCSR489FZB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.
experiment encode accession: ENCSR489FZB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB963HHI


title: proliferation CRISPR screen from K562 (ENCLB867XLZ)

description:
https://www.encodeproject.org/experiments/ENCSR157EQV/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR157EQV
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB867XLZ

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS311HJC at ENCODE; https://www.encodeproject.org/ENCBS311HJC/


title: PRO-cap from pancreas (ENCLB915OUM)

description:
https://www.encodeproject.org/experiments/ENCSR489BCG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR489BCG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB915OUM

source_name: Homo sapiens pancreas organoid

value: pancreas

value: organoid

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder

value: ENCBS293NLV at ENCODE; https://www.encodeproject.org/ENCBS293NLV/


title: STARR-seq from A549 (ENCLB766WOU)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB766WOU
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM Hydrocortisone (agonist) for 4 hours

value: cell line

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:Hydrocortisone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS702UMG at ENCODE; https://www.encodeproject.org/ENCBS702UMG/


title: Flow-FISH CRISPR screen from K562 (ENCLB674IVK)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB674IVK
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS462WHN at ENCODE; https://www.encodeproject.org/ENCBS462WHN/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB937EMB)

description:
https://www.encodeproject.org/experiments/ENCSR156DZX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR156DZX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB937EMB

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS745WJC at ENCODE; https://www.encodeproject.org/ENCBS745WJC/


title: STARR-seq from A549 (ENCLB293ZFJ)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB293ZFJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: adult

value: ENCBS021QPJ at ENCODE; https://www.encodeproject.org/ENCBS021QPJ/


title: STARR-seq from A549 (ENCLB785FKN)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB785FKN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:Hydrocortisone; treatment_type:chemical; duration:4; duration_units:hour;


title: STARR-seq from A549 (ENCLB612HWB)

description:
https://www.encodeproject.org/experiments/ENCSR262PQN/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR262PQN
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB612HWB
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: treatment_term_name:AZD9567; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS214TYV at ENCODE; https://www.encodeproject.org/ENCBS214TYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB914RMS)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB914RMS
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS543NBG at ENCODE; https://www.encodeproject.org/ENCBS543NBG/


title: DNase-seq from immature natural killer cell (ENCLB763FVV)

description:
https://www.encodeproject.org/experiments/ENCSR611CGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR611CGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB763FVV

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS101HFE at ENCODE; https://www.encodeproject.org/ENCBS101HFE/


title: STARR-seq from A549 (ENCLB238COI)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB238COI
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: adult

value: 58 year

value: ENCBS916DKO at ENCODE; https://www.encodeproject.org/ENCBS916DKO/


title: STARR-seq from A549 (ENCLB338NDL)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB338NDL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:Hydrocortisone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS001CTK at ENCODE; https://www.encodeproject.org/ENCBS001CTK/


title: Flow-FISH CRISPR screen from K562 (ENCLB567YET)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB567YET
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB237SUC)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB237SUC
size range: 200-210

value: ENCBS194VHJ at ENCODE; https://www.encodeproject.org/ENCBS194VHJ/


title: STARR-seq from A549 (ENCLB980MQM)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB980MQM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS021QPJ at ENCODE; https://www.encodeproject.org/ENCBS021QPJ/


title: STARR-seq from A549 (ENCLB131LTV)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB131LTV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB933EXU)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB933EXU
size range: 200-210


title: STARR-seq from A549 (ENCLB766UWH)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB766UWH
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS702UMG at ENCODE; https://www.encodeproject.org/ENCBS702UMG/


title: STARR-seq from A549 (ENCLB692VUD)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB692VUD
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB327BQL)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB327BQL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB443NFL)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB443NFL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB737IQJ)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB737IQJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB328YBQ)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB328YBQ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB511AFF)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB511AFF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from K562 (ENCLB303JSA)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB303JSA
size range: 200-210

value: ENCBS462WHN at ENCODE; https://www.encodeproject.org/ENCBS462WHN/


title: STARR-seq from A549 (ENCLB461JZA)

description:
https://www.encodeproject.org/experiments/ENCSR261RMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR261RMM
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB461JZA
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line


title: DNase-seq from activated B cell (ENCLB798ACO)

description:
https://www.encodeproject.org/experiments/ENCSR484IKU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR484IKU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB798ACO

source_name: Homo sapiens female adult (54 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: 54 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS943GYE at ENCODE; https://www.encodeproject.org/ENCBS943GYE/


title: DNase-seq from activated B cell (ENCLB154JCL)

description:
https://www.encodeproject.org/experiments/ENCSR484IKU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR484IKU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB154JCL

value: adult

value: ENCBS308JDV at ENCODE; https://www.encodeproject.org/ENCBS308JDV/


title: Flow-FISH CRISPR screen from K562 (ENCLB394KAP)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB394KAP
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB454AID)

description:
https://www.encodeproject.org/experiments/ENCSR609RED/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR609RED
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB454AID
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford