title: Con1_D3

description:
Library name: Sample1
read_count_Con1_D3

value: periodontal healing tissue

value: Mixed cells

value: WT

value: peridontal bone defect

value: Day 3


title: DNase-seq from T47D (ENCLB378IZB)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR377MBS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR377MBS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB378IZB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens T47D cell line treated with 1 uM methoxychlor for 504 hours

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: mammary ductal carcinoma

tag: dev stage

value: adult

tag: age

value: 54 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:504; duration_units:hour;

tag: link

value: ENCBS853ZME at ENCODE; https://www.encodeproject.org/ENCBS853ZME/


title: DNase-seq from T47D (ENCLB787SYL)

description:
https://www.encodeproject.org/experiments/ENCSR378PVK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR378PVK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB787SYL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS137NJS at ENCODE; https://www.encodeproject.org/ENCBS137NJS/


title: DNase-seq from inflammatory macrophage (ENCLB524BOJ)

description:
https://www.encodeproject.org/experiments/ENCSR372AMW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR372AMW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB524BOJ

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 24 hours

value: inflammatory macrophage

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS410KBM at ENCODE; https://www.encodeproject.org/ENCBS410KBM/


title: DNase-seq from MCF-7 (ENCLB702XUS)

description:
https://www.encodeproject.org/experiments/ENCSR378FRD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR378FRD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB702XUS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 504 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS120FVW at ENCODE; https://www.encodeproject.org/ENCBS120FVW/


title: DNase-seq from MCF-7 (ENCLB975OHT)

description:
https://www.encodeproject.org/experiments/ENCSR376GDE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376GDE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB975OHT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 2 hours

value: female

value: adult

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS462ICY at ENCODE; https://www.encodeproject.org/ENCBS462ICY/


title: DNase-seq from T47D (ENCLB464KVB)

description:
https://www.encodeproject.org/experiments/ENCSR589FJB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR589FJB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB464KVB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM diethylstilbestrol for 504 hours

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS082KBI at ENCODE; https://www.encodeproject.org/ENCBS082KBI/


title: DNase-seq from T47D (ENCLB631NII)

description:
https://www.encodeproject.org/experiments/ENCSR581GVV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581GVV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB631NII
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 120 hours

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS413JJF at ENCODE; https://www.encodeproject.org/ENCBS413JJF/


title: DNase-seq from MCF-7 (ENCLB026KQU)

description:
https://www.encodeproject.org/experiments/ENCSR376GDE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR376GDE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB026KQU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS579YSP at ENCODE; https://www.encodeproject.org/ENCBS579YSP/


title: DNase-seq from OCI-M1 (ENCLB705SWZ)

description:
https://www.encodeproject.org/experiments/ENCSR370KGA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR370KGA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB705SWZ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens OCI-M1 cell line

value: cell line

value: not collected

value: 62 year

value: DSMZ

value: ENCBS909QUM at ENCODE; https://www.encodeproject.org/ENCBS909QUM/


title: DNase-seq from MCF-7 (ENCLB651SSA)

description:
https://www.encodeproject.org/experiments/ENCSR361BGH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR361BGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB651SSA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 2 hours

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS441HMV at ENCODE; https://www.encodeproject.org/ENCBS441HMV/


title: Con1_D7

status: Public on Mar 01 2026

city: Gold coast

first: Jiaying

last: Liu

address: G40, parkland drive

country: Australia

institute: Griffith university

description:
Library name: Sample2
read_count_Con1_D7

library_source: transcriptomic

data_processing:
SOAPnuke
The raw data contains reads of low quality, reads with adaptor sequences and reads with high levels of N base. Those reads need to be filtered before the data analysis for reliability analysis results.
HISAT was used to align the clean reads to the reference genome
Bowtie2 was used to align the clean reads to the reference genes
Assembly: GCF_015227675.2_mRatBN7.2
Supplementary files format and content: csv files include count values for each sample

molecule: total RNA

organism: Rattus norvegicus

source_name: periodontal healing tissue

growth_protocol: Samples were collected from experimental animals at different time points.

extract_protocol:
RNA was harvest with PureLink RNA extraction kit (Thermofisher). A total of 55μl at concentration above 10ng/μl RNA for each sample was used for the construction of sequencing libraries.
Library construction was performed by BGI using the DNBSEQ platform. Sequencing libraries were generated using the BGI mRNA-seq Library Prep Kit following the manufacturer’s protocol.

tag: tissue

value: periodontal healing tissue

tag: cell type

value: Mixed cells

tag: genotype

value: WT

tag: treatment

value: peridontal bone defect

tag: time

value: Day 7


title: DNase-seq from TF-1.CN5a.1 (ENCLB786HWH)

description:
https://www.encodeproject.org/experiments/ENCSR355NOR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR355NOR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB786HWH
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens TF-1.CN5a.1 cell line

value: male

value: 35 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS902THR at ENCODE; https://www.encodeproject.org/ENCBS902THR/


title: DNase-seq from K562 (ENCLB065RBV)

description:
https://www.encodeproject.org/experiments/ENCSR578GHZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR578GHZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB065RBV

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS344HZB at ENCODE; https://www.encodeproject.org/ENCBS344HZB/


title: DNase-seq from OCI-M1 (ENCLB003QCB)

description:
https://www.encodeproject.org/experiments/ENCSR370KGA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR370KGA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB003QCB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: not collected

value: adult

value: 62 year

value: DSMZ

value: ENCBS096CRV at ENCODE; https://www.encodeproject.org/ENCBS096CRV/


title: DNase-seq from K562 (ENCLB242HLS)

description:
https://www.encodeproject.org/experiments/ENCSR574BOG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR574BOG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB242HLS

value: female

value: ENCBS284PNJ at ENCODE; https://www.encodeproject.org/ENCBS284PNJ/


title: DNase-seq from NCI-H510A (ENCLB693QVU)

description:
https://www.encodeproject.org/experiments/ENCSR573PUI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR573PUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB693QVU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H510A cell line

value: 56 year

value: ENCBS990JLU at ENCODE; https://www.encodeproject.org/ENCBS990JLU/


title: DNase-seq from NCI-H510A (ENCLB935MVH)

description:
https://www.encodeproject.org/experiments/ENCSR573PUI/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR573PUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB935MVH
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: ENCBS511YOJ at ENCODE; https://www.encodeproject.org/ENCBS511YOJ/


title: DNase-seq from NCI-H510A (ENCLB650IWG)

description:
https://www.encodeproject.org/experiments/ENCSR573PUI/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR573PUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB650IWG

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS857GPG at ENCODE; https://www.encodeproject.org/ENCBS857GPG/


title: DNase-seq from NCI-H510A (ENCLB751NCL)

description:
https://www.encodeproject.org/experiments/ENCSR573PUI/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR573PUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB751NCL
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: cell line

value: ENCBS033RWM at ENCODE; https://www.encodeproject.org/ENCBS033RWM/


title: DNase-seq from K562 (ENCLB052VXM)

description:
https://www.encodeproject.org/experiments/ENCSR359UQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR359UQN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB052VXM
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS820SPW at ENCODE; https://www.encodeproject.org/ENCBS820SPW/


title: DNase-seq from suppressor macrophage (ENCLB910ZHV)

description:
https://www.encodeproject.org/experiments/ENCSR348JIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR348JIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB910ZHV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: adult

value: 21 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS163RZN at ENCODE; https://www.encodeproject.org/ENCBS163RZN/


title: DNase-seq from MCF-7 (ENCLB798VVC)

description:
https://www.encodeproject.org/experiments/ENCSR361BGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR361BGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB798VVC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS501UDE at ENCODE; https://www.encodeproject.org/ENCBS501UDE/


title: DNase-seq from inflammatory macrophage (ENCLB545IOT)

description:
https://www.encodeproject.org/experiments/ENCSR570VVF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR570VVF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB545IOT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: male

value: 40 year

value: John Stamatoyannopoulos, UW

value: ENCBS988DZM at ENCODE; https://www.encodeproject.org/ENCBS988DZM/


title: DNase-seq from MCF-7 (ENCLB989YXG)

description:
https://www.encodeproject.org/experiments/ENCSR567BOA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR567BOA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB989YXG

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 120 hours

value: cell line

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS365QCH at ENCODE; https://www.encodeproject.org/ENCBS365QCH/


title: DNase-seq from MCF-7 (ENCLB376ONW)

description:
https://www.encodeproject.org/experiments/ENCSR335KNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR335KNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB376ONW

source_name: Homo sapiens MCF-7 cell line treated with 1 nM genistein for 120 hours

value: adult

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS524AGY at ENCODE; https://www.encodeproject.org/ENCBS524AGY/


title: DNase-seq from SHP77 (ENCLB128QJT)

description:
https://www.encodeproject.org/experiments/ENCSR563NIX/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR563NIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB128QJT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens SHP77 cell line

value: 54 year

value: ENCBS581GRL at ENCODE; https://www.encodeproject.org/ENCBS581GRL/


title: DNase-seq from MCF-7 (ENCLB176QNH)

description:
https://www.encodeproject.org/experiments/ENCSR348RBN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR348RBN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB176QNH

source_name: Homo sapiens MCF-7 cell line treated with 1 nM diethylstilbestrol for 504 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS265NPB at ENCODE; https://www.encodeproject.org/ENCBS265NPB/


title: DNase-seq from SHP77 (ENCLB864ILK)

description:
https://www.encodeproject.org/experiments/ENCSR563NIX/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR563NIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB864ILK
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: ENCBS041JSH at ENCODE; https://www.encodeproject.org/ENCBS041JSH/


title: DNase-seq from MCF-7 (ENCLB275EYF)

description:
https://www.encodeproject.org/experiments/ENCSR335KNZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR335KNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB275EYF

source_name: Homo sapiens MCF-7 cell line

value: John Stamatoyannopoulos, UW

value: ENCBS201LGQ at ENCODE; https://www.encodeproject.org/ENCBS201LGQ/


title: DNase-seq from MCF-7 (ENCLB649LVB)

description:
https://www.encodeproject.org/experiments/ENCSR349HVV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR349HVV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB649LVB

source_name: Homo sapiens MCF-7 cell line treated with 10 uM methoxychlor for 2 hours

value: cell line

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS249NFX at ENCODE; https://www.encodeproject.org/ENCBS249NFX/


title: DNase-seq from T47D (ENCLB346CCA)

description:
https://www.encodeproject.org/experiments/ENCSR553FMA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR553FMA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB346CCA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line

value: mammary ductal carcinoma

value: adult

value: ENCBS426BWU at ENCODE; https://www.encodeproject.org/ENCBS426BWU/


title: DNase-seq from MCF-7 (ENCLB422UEE)

description:
https://www.encodeproject.org/experiments/ENCSR349HVV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR349HVV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB422UEE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS990MUJ at ENCODE; https://www.encodeproject.org/ENCBS990MUJ/


title: DNase-seq from SKNO-1 (ENCLB412HQF)

description:
https://www.encodeproject.org/experiments/ENCSR334ZQD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR334ZQD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB412HQF

source_name: Homo sapiens SKNO-1 cell line

value: 22 year

value: DSMZ

value: ENCBS266MLV at ENCODE; https://www.encodeproject.org/ENCBS266MLV/


title: DNase-seq from NCI-H2141 (ENCLB222HNV)

description:
https://www.encodeproject.org/experiments/ENCSR329BVR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR329BVR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB222HNV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2141 cell line treated with 0.1% DMSO for 48 hours

value: 58 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS408SVO at ENCODE; https://www.encodeproject.org/ENCBS408SVO/


title: DNase-seq from MCF-7 (ENCLB066ITA)

description:
https://www.encodeproject.org/experiments/ENCSR324KKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR324KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB066ITA

source_name: Homo sapiens MCF-7 cell line treated with 10 nM diethylstilbestrol for 2 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS071QIW at ENCODE; https://www.encodeproject.org/ENCBS071QIW/


title: DNase-seq from MV-4-11 (ENCLB068ZVS)

description:
https://www.encodeproject.org/experiments/ENCSR320VYP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR320VYP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB068ZVS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MV-4-11 cell line

value: cell line

value: male

value: 10 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS957GAK at ENCODE; https://www.encodeproject.org/ENCBS957GAK/


title: DNase-seq from T47D (ENCLB346GEF)

description:
https://www.encodeproject.org/experiments/ENCSR553FMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR553FMA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB346GEF

value: mammary ductal carcinoma

value: adult

value: 54 year

value: ENCBS929SPU at ENCODE; https://www.encodeproject.org/ENCBS929SPU/


title: DNase-seq from MCF-7 (ENCLB536VMG)

description:
https://www.encodeproject.org/experiments/ENCSR324KKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR324KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB536VMG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS309KWK at ENCODE; https://www.encodeproject.org/ENCBS309KWK/


title: DNase-seq from MV-4-11 (ENCLB162ATJ)

description:
https://www.encodeproject.org/experiments/ENCSR320VYP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR320VYP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB162ATJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

value: ENCBS529VLU at ENCODE; https://www.encodeproject.org/ENCBS529VLU/


title: DNase-seq from SHP77 (ENCLB321ACH)

description:
https://www.encodeproject.org/experiments/ENCSR319KKN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR319KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB321ACH

value: ENCBS804PMN at ENCODE; https://www.encodeproject.org/ENCBS804PMN/


title: DNase-seq from MCF-7 (ENCLB841QRE)

description:
https://www.encodeproject.org/experiments/ENCSR567BOA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR567BOA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB841QRE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: breast cancer (adenocarcinoma)

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS915WCM at ENCODE; https://www.encodeproject.org/ENCBS915WCM/


title: DNase-seq from SHP77 (ENCLB758WBL)

description:
https://www.encodeproject.org/experiments/ENCSR563NIX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR563NIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB758WBL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens SHP77 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS543RJP at ENCODE; https://www.encodeproject.org/ENCBS543RJP/


title: DNase-seq from SHP77 (ENCLB916MEY)

description:
https://www.encodeproject.org/experiments/ENCSR563NIX/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR563NIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB916MEY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS061KAK at ENCODE; https://www.encodeproject.org/ENCBS061KAK/


title: DNase-seq from MOLM-13 (ENCLB753YUA)

description:
https://www.encodeproject.org/experiments/ENCSR562UWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562UWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753YUA
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens MOLM-13 cell line

value: 20 year

value: DSMZ

value: ENCBS436BAI at ENCODE; https://www.encodeproject.org/ENCBS436BAI/


title: DNase-seq from MCF-7 (ENCLB022TXT)

description:
https://www.encodeproject.org/experiments/ENCSR541KYJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541KYJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB022TXT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 504 hours

value: adult

value: 69 year

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS042CAU at ENCODE; https://www.encodeproject.org/ENCBS042CAU/


title: DNase-seq from CD14-positive monocyte (ENCLB358YIY)

description:
https://www.encodeproject.org/experiments/ENCSR539ZYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR539ZYY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB358YIY

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: ENCBS256WGB at ENCODE; https://www.encodeproject.org/ENCBS256WGB/


title: DNase-seq from T47D (ENCLB246OKN)

description:
https://www.encodeproject.org/experiments/ENCSR312KEH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR312KEH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB246OKN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM genistein for 504 hours

value: cell line

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS050FMG at ENCODE; https://www.encodeproject.org/ENCBS050FMG/


title: DNase-seq from NCI-H2227 (ENCLB584FBS)

description:
https://www.encodeproject.org/experiments/ENCSR307PHD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR307PHD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB584FBS

source_name: Homo sapiens NCI-H2227 cell line treated with 0.1% DMSO for 48 hours

value: male

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS564FJS at ENCODE; https://www.encodeproject.org/ENCBS564FJS/


title: DNase-seq from NCI-H187 (ENCLB517MAD)

description:
https://www.encodeproject.org/experiments/ENCSR534BJZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR534BJZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB517MAD

source_name: Homo sapiens NCI-H187 cell line

value: adult

value: 47 year

value: ATCC

value: ENCBS001WKS at ENCODE; https://www.encodeproject.org/ENCBS001WKS/


title: DNase-seq from NCI-H187 (ENCLB872QXR)

description:
https://www.encodeproject.org/experiments/ENCSR534BJZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR534BJZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB872QXR

source_name: Homo sapiens NCI-H187 cell line treated with 0.1% DMSO for 48 hours

value: ENCBS709EFH at ENCODE; https://www.encodeproject.org/ENCBS709EFH/


title: DNase-seq from DMS 273 (ENCLB585OSE)

description:
https://www.encodeproject.org/experiments/ENCSR319ZGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR319ZGQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB585OSE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens DMS 273 cell line

value: DMS 273

value: 50 year

value: ECACC

value: ENCBS140SIR at ENCODE; https://www.encodeproject.org/ENCBS140SIR/


title: DNase-seq from SHP77 (ENCLB847XSV)

description:
https://www.encodeproject.org/experiments/ENCSR319KKN/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR319KKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847XSV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens SHP77 cell line

value: cell line

value: ENCBS458VXI at ENCODE; https://www.encodeproject.org/ENCBS458VXI/


title: DNase-seq from globus pallidus (ENCLB816KFV)

description:
https://www.encodeproject.org/experiments/ENCSR527SDF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527SDF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB816KFV
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens female adult (90 or above years) globus pallidus tissue

value: globus pallidus

value: tissue

value: female

value: 90 or above year

value: Thomas Montine

value: ENCBS717SKR at ENCODE; https://www.encodeproject.org/ENCBS717SKR/


title: DNase-seq from brain (ENCLB469RST)

description:
https://www.encodeproject.org/experiments/ENCSR328XHS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR328XHS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB469RST
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens female adult (90 or above years) brain tissue

value: brain

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS356VHV at ENCODE; https://www.encodeproject.org/ENCBS356VHV/


title: DNase-seq from hippocampal formation (ENCLB614HAE)

description:
https://www.encodeproject.org/experiments/ENCSR302MJR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR302MJR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB614HAE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens female adult (90 or above years) hippocampal formation tissue

value: hippocampal formation

value: ENCBS790OBL at ENCODE; https://www.encodeproject.org/ENCBS790OBL/


title: DNase-seq from NCI-H187 (ENCLB966AUW)

description:
https://www.encodeproject.org/experiments/ENCSR534BJZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR534BJZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB966AUW
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: 47 year

value: ATCC

value: ENCBS680VNY at ENCODE; https://www.encodeproject.org/ENCBS680VNY/


title: DNase-seq from T47D (ENCLB028TFF)

description:
https://www.encodeproject.org/experiments/ENCSR523WVG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR523WVG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB028TFF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM genistein for 2 hours

value: cell line

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS767GOJ at ENCODE; https://www.encodeproject.org/ENCBS767GOJ/


title: DNase-seq from MCF-7 (ENCLB500VDI)

description:
https://www.encodeproject.org/experiments/ENCSR295EGN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR295EGN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB500VDI

source_name: Homo sapiens MCF-7 cell line treated with 10 nM genistein for 504 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS056APF at ENCODE; https://www.encodeproject.org/ENCBS056APF/


title: DNase-seq from MCF-7 (ENCLB247CET)

description:
https://www.encodeproject.org/experiments/ENCSR521YSA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR521YSA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB247CET
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 1 uM methoxychlor for 2 hours

value: adult

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS059SGN at ENCODE; https://www.encodeproject.org/ENCBS059SGN/


title: DNase-seq from MCF-7 (ENCLB881XMC)

description:
https://www.encodeproject.org/experiments/ENCSR521YSA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR521YSA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB881XMC

value: ENCBS269VYL at ENCODE; https://www.encodeproject.org/ENCBS269VYL/


title: DNase-seq from MCF-7 (ENCLB845UYD)

description:
https://www.encodeproject.org/experiments/ENCSR295EGN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR295EGN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845UYD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ATCC

value: ENCBS011AAZ at ENCODE; https://www.encodeproject.org/ENCBS011AAZ/


title: DNase-seq from MCF-7 (ENCLB902OBT)

description:
https://www.encodeproject.org/experiments/ENCSR289STI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR289STI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB902OBT

source_name: Homo sapiens MCF-7 cell line treated with 4 nM bisphenol a for 2 hours

value: cell line

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS494HNX at ENCODE; https://www.encodeproject.org/ENCBS494HNX/


title: DNase-seq from T47D (ENCLB279RKY)

description:
https://www.encodeproject.org/experiments/ENCSR518PDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518PDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB279RKY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM diethylstilbestrol for 504 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS564UJG at ENCODE; https://www.encodeproject.org/ENCBS564UJG/


title: DNase-seq from brain (ENCLB975HGY)

description:
https://www.encodeproject.org/experiments/ENCSR291STT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR291STT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB975HGY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: brain

value: tissue

value: female

value: 90 or above year

value: Thomas Montine

value: ENCBS715QBX at ENCODE; https://www.encodeproject.org/ENCBS715QBX/


title: DNase-seq from MCF-7 (ENCLB141RFX)

description:
https://www.encodeproject.org/experiments/ENCSR289STI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR289STI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB141RFX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: John Stamatoyannopoulos, UW

value: ENCBS401GUD at ENCODE; https://www.encodeproject.org/ENCBS401GUD/


title: DNase-seq from MCF-7 (ENCLB428FXQ)

description:
https://www.encodeproject.org/experiments/ENCSR545JUV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR545JUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB428FXQ

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 2 hours

value: cell line

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS210FFX at ENCODE; https://www.encodeproject.org/ENCBS210FFX/


title: DNase-seq from CD14-positive monocyte (ENCLB258MMY)

description:
https://www.encodeproject.org/experiments/ENCSR288RCG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR288RCG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB258MMY

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS773YBD at ENCODE; https://www.encodeproject.org/ENCBS773YBD/


title: DNase-seq from brain (ENCLB371DOK)

description:
https://www.encodeproject.org/experiments/ENCSR269ODA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR269ODA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB371DOK

value: brain

value: tissue

value: female

value: 90 or above year

value: Thomas Montine

value: ENCBS708XWM at ENCODE; https://www.encodeproject.org/ENCBS708XWM/


title: DNase-seq from U-87 MG (ENCLB936AXA)

description:
https://www.encodeproject.org/experiments/ENCSR296NTM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR296NTM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB936AXA

source_name: Homo sapiens U-87 MG cell line

value: U-87 MG

value: unknown

value: adult

value: 44 year

value: John Stamatoyannopoulos, UW

value: ENCBS582IBY at ENCODE; https://www.encodeproject.org/ENCBS582IBY/


title: DNase-seq from CD14-positive monocyte (ENCLB873ZLE)

description:
https://www.encodeproject.org/experiments/ENCSR514NZF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR514NZF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB873ZLE

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: ENCBS862ZWL at ENCODE; https://www.encodeproject.org/ENCBS862ZWL/


title: DNase-seq from NCI-H526 (ENCLB952CTP)

description:
https://www.encodeproject.org/experiments/ENCSR268WIC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR268WIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB952CTP
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H526 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: male

value: 55 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS549BEO at ENCODE; https://www.encodeproject.org/ENCBS549BEO/


title: DNase-seq from OCI-AML2 (ENCLB981HOZ)

description:
https://www.encodeproject.org/experiments/ENCSR515BQK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515BQK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB981HOZ

source_name: Homo sapiens OCI-AML2 cell line

value: 65 year

value: DSMZ

value: ENCBS561YLA at ENCODE; https://www.encodeproject.org/ENCBS561YLA/


title: DNase-seq from NCI-H146 (ENCLB232XBE)

description:
https://www.encodeproject.org/experiments/ENCSR509GUF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR509GUF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB232XBE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H146 cell line treated with 0.1% DMSO for 48 hours

value: 59 year

value: ENCBS214TJP at ENCODE; https://www.encodeproject.org/ENCBS214TJP/


title: DNase-seq from NCI-H2196 (ENCLB007DHD)

description:
https://www.encodeproject.org/experiments/ENCSR278EKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR278EKI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007DHD
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2196 cell line

value: adult

value: 67 year

value: ENCBS281WYI at ENCODE; https://www.encodeproject.org/ENCBS281WYI/


title: DNase-seq from NCI-H526 (ENCLB635TSC)

description:
https://www.encodeproject.org/experiments/ENCSR268WIC/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR268WIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB635TSC

source_name: Homo sapiens NCI-H526 cell line

value: John Stamatoyannopoulos, UW

value: ENCBS005FMQ at ENCODE; https://www.encodeproject.org/ENCBS005FMQ/


title: DNase-seq from NOMO-1 (ENCLB274BRL)

description:
https://www.encodeproject.org/experiments/ENCSR499OMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR499OMA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB274BRL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NOMO-1 cell line

value: female

value: 31 year

value: ENCBS052IVU at ENCODE; https://www.encodeproject.org/ENCBS052IVU/


title: DNase-seq from NCI-H526 (ENCLB378TIO)

description:
https://www.encodeproject.org/experiments/ENCSR268WIC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR268WIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB378TIO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: male

value: 55 year

value: ENCBS537QDQ at ENCODE; https://www.encodeproject.org/ENCBS537QDQ/


title: DNase-seq from NCI-H526 (ENCLB485BTG)

description:
https://www.encodeproject.org/experiments/ENCSR268WIC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR268WIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB485BTG

value: ATCC

value: ENCBS449BKY at ENCODE; https://www.encodeproject.org/ENCBS449BKY/


title: DNase-seq from CD14-positive monocyte (ENCLB429IHV)

description:
https://www.encodeproject.org/experiments/ENCSR491DPW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR491DPW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB429IHV

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 40 year

value: Shelly Heimfeld

value: ENCBS566KAT at ENCODE; https://www.encodeproject.org/ENCBS566KAT/


title: DNase-seq from MCF-7 (ENCLB096GIS)

description:
https://www.encodeproject.org/experiments/ENCSR488KHZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR488KHZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB096GIS
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 120 hours

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS696YJD at ENCODE; https://www.encodeproject.org/ENCBS696YJD/


title: DNase-seq from NCI-H524 (ENCLB043XBU)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 6
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043XBU

source_name: Homo sapiens NCI-H524 cell line

value: 63 year

value: John Stamatoyannopoulos, UW

value: ENCBS172PMM at ENCODE; https://www.encodeproject.org/ENCBS172PMM/


title: DNase-seq from NCI-H524 (ENCLB089CAJ)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB089CAJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H524 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: male

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS206UQB at ENCODE; https://www.encodeproject.org/ENCBS206UQB/


title: DNase-seq from NCI-H524 (ENCLB490ETI)

description:
https://www.encodeproject.org/experiments/ENCSR487MIC/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR487MIC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB490ETI
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ATCC

value: ENCBS434HAC at ENCODE; https://www.encodeproject.org/ENCBS434HAC/


title: DNase-seq from suppressor macrophage (ENCLB079RIW)

description:
https://www.encodeproject.org/experiments/ENCSR485ZRK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR485ZRK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB079RIW
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 0.5 hours

value: suppressor macrophage

value: primary cell

value: 40 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:0.5; duration_units:hour;

value: ENCBS106MSS at ENCODE; https://www.encodeproject.org/ENCBS106MSS/


title: DNase-seq from T47D (ENCLB706SLC)

description:
https://www.encodeproject.org/experiments/ENCSR478BMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR478BMM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB706SLC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM genistein for 504 hours

value: female

value: mammary ductal carcinoma

value: adult

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS806DXS at ENCODE; https://www.encodeproject.org/ENCBS806DXS/


title: DNase-seq from inflammatory macrophage (ENCLB064UDB)

description:
https://www.encodeproject.org/experiments/ENCSR255JWJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR255JWJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB064UDB

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS228GJB at ENCODE; https://www.encodeproject.org/ENCBS228GJB/


title: DNase-seq from Kasumi-1 (ENCLB482UQQ)

description:
https://www.encodeproject.org/experiments/ENCSR255BHB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR255BHB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB482UQQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens Kasumi-1 cell line

value: cell line

value: male

value: child

value: 7 week

value: ATCC

value: ENCBS471XAC at ENCODE; https://www.encodeproject.org/ENCBS471XAC/


title: DNase-seq from Kasumi-1 (ENCLB627PXB)

description:
https://www.encodeproject.org/experiments/ENCSR255BHB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR255BHB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB627PXB

value: ENCBS120MNQ at ENCODE; https://www.encodeproject.org/ENCBS120MNQ/


title: DNase-seq from MCF-7 (ENCLB321HND)

description:
https://www.encodeproject.org/experiments/ENCSR476UXZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR476UXZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB321HND

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 120 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS873HRQ at ENCODE; https://www.encodeproject.org/ENCBS873HRQ/


title: DNase-seq from T47D (ENCLB608NEL)

description:
https://www.encodeproject.org/experiments/ENCSR477WEE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR477WEE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB608NEL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM diethylstilbestrol for 120 hours

value: mammary ductal carcinoma

value: adult

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS637SMH at ENCODE; https://www.encodeproject.org/ENCBS637SMH/


title: DNase-seq from NCI-H82 (ENCLB245NQM)

description:
https://www.encodeproject.org/experiments/ENCSR471BIZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR471BIZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB245NQM

source_name: Homo sapiens NCI-H82 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: 40 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS644SJC at ENCODE; https://www.encodeproject.org/ENCBS644SJC/


title: DNase-seq from inflammatory macrophage (ENCLB189LKC)

description:
https://www.encodeproject.org/experiments/ENCSR254QMG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR254QMG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB189LKC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: male

value: 21 year

value: Shelly Heimfeld

value: ENCBS272TND at ENCODE; https://www.encodeproject.org/ENCBS272TND/


title: DNase-seq from MCF-7 (ENCLB779IZG)

description:
https://www.encodeproject.org/experiments/ENCSR249AOU/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR249AOU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB779IZG

source_name: Homo sapiens MCF-7 cell line treated with 1 nM genistein for 120 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS604SPB at ENCODE; https://www.encodeproject.org/ENCBS604SPB/


title: DNase-seq from suppressor macrophage (ENCLB017NXD)

description:
https://www.encodeproject.org/experiments/ENCSR485ZRK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR485ZRK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB017NXD

value: suppressor macrophage

value: adult

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:0.5; duration_units:hour;

value: ENCBS016UMZ at ENCODE; https://www.encodeproject.org/ENCBS016UMZ/


title: DNase-seq from MCF-7 (ENCLB170YHG)

description:
https://www.encodeproject.org/experiments/ENCSR245HBD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR245HBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB170YHG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line

value: cell line

value: John Stamatoyannopoulos, UW

value: ENCBS707KOJ at ENCODE; https://www.encodeproject.org/ENCBS707KOJ/


title: DNase-seq from T47D (ENCLB257YBX)

description:
https://www.encodeproject.org/experiments/ENCSR250PTL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR250PTL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB257YBX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM diethylstilbestrol for 120 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS865PFW at ENCODE; https://www.encodeproject.org/ENCBS865PFW/


title: DNase-seq from NCI-H187 (ENCLB487UHO)

description:
https://www.encodeproject.org/experiments/ENCSR459LSB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR459LSB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB487UHO
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H187 cell line

value: male

value: 47 year

value: ENCBS575ZJM at ENCODE; https://www.encodeproject.org/ENCBS575ZJM/


title: DNase-seq from MCF-7 (ENCLB905MLQ)

description:
https://www.encodeproject.org/experiments/ENCSR243RKQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR243RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB905MLQ

source_name: Homo sapiens MCF-7 cell line treated with 100 nM genistein for 120 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: ENCBS203XMB at ENCODE; https://www.encodeproject.org/ENCBS203XMB/


title: DNase-seq from NCI-H187 (ENCLB400JGX)

description:
https://www.encodeproject.org/experiments/ENCSR459LSB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR459LSB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB400JGX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: adult

value: ENCBS754OAQ at ENCODE; https://www.encodeproject.org/ENCBS754OAQ/


title: DNase-seq from NCI-H446 (ENCLB271QJH)

description:
https://www.encodeproject.org/experiments/ENCSR247UDP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR247UDP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB271QJH
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H446 cell line

value: cell line

value: 61 year

value: ENCBS734MPT at ENCODE; https://www.encodeproject.org/ENCBS734MPT/


title: DNase-seq from MCF-7 (ENCLB967VRK)

description:
https://www.encodeproject.org/experiments/ENCSR243RKQ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR243RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB967VRK
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 1 nM genistein for 504 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS847NWR at ENCODE; https://www.encodeproject.org/ENCBS847NWR/


title: DNase-seq from NCI-H1105 (ENCLB055QRN)

description:
https://www.encodeproject.org/experiments/ENCSR244BJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR244BJV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB055QRN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H1105 cell line treated with 0.1% DMSO for 48 hours

value: 73 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS634SHW at ENCODE; https://www.encodeproject.org/ENCBS634SHW/


title: DNase-seq from MCF-7 (ENCLB453XUD)

description:
https://www.encodeproject.org/experiments/ENCSR249AOU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR249AOU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB453XUD

source_name: Homo sapiens MCF-7 cell line treated with 0.1% dmso for 504 hours

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS023KFN at ENCODE; https://www.encodeproject.org/ENCBS023KFN/


title: DNase-seq from T47D (ENCLB404BOY)

description:
https://www.encodeproject.org/experiments/ENCSR458MAQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR458MAQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB404BOY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM diethylstilbestrol for 120 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS555TVK at ENCODE; https://www.encodeproject.org/ENCBS555TVK/


title: DNase-seq from NCI-H1105 (ENCLB486GFL)

description:
https://www.encodeproject.org/experiments/ENCSR244BJV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR244BJV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB486GFL
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

value: male

value: adult

value: ATCC

value: ENCBS941IXA at ENCODE; https://www.encodeproject.org/ENCBS941IXA/


title: DNase-seq from MCF-7 (ENCLB136EOB)

description:
https://www.encodeproject.org/experiments/ENCSR245HBD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR245HBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB136EOB

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: John Stamatoyannopoulos, UW

value: ENCBS035YXS at ENCODE; https://www.encodeproject.org/ENCBS035YXS/


title: DNase-seq from inflammatory macrophage (ENCLB476PKM)

description:
https://www.encodeproject.org/experiments/ENCSR452KBX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR452KBX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476PKM

value: inflammatory macrophage

value: primary cell

value: 21 year

value: Shelly Heimfeld

value: ENCBS149AEB at ENCODE; https://www.encodeproject.org/ENCBS149AEB/


title: DNase-seq from MCF-7 (ENCLB581DBN)

description:
https://www.encodeproject.org/experiments/ENCSR243RKQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR243RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB581DBN
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS245JTP at ENCODE; https://www.encodeproject.org/ENCBS245JTP/


title: DNase-seq from OCI-AML2 (ENCLB035EXT)

description:
https://www.encodeproject.org/experiments/ENCSR457MWX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR457MWX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB035EXT

source_name: Homo sapiens OCI-AML2 cell line

value: male

value: 65 year

value: DSMZ

value: ENCBS023XNK at ENCODE; https://www.encodeproject.org/ENCBS023XNK/


title: DNase-seq from MCF-7 (ENCLB753PUS)

description:
https://www.encodeproject.org/experiments/ENCSR451GBR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR451GBR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753PUS

value: cell line

value: adult

value: ATCC

value: ENCBS384CJR at ENCODE; https://www.encodeproject.org/ENCBS384CJR/


title: DNase-seq from K562 (ENCLB161PXR)

description:
https://www.encodeproject.org/experiments/ENCSR451YGS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR451YGS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161PXR

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS844WLS at ENCODE; https://www.encodeproject.org/ENCBS844WLS/


title: DNase-seq from CD14-positive monocyte (ENCLB290PRQ)

description:
https://www.encodeproject.org/experiments/ENCSR476KXY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR476KXY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB290PRQ

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: ENCBS446NMR at ENCODE; https://www.encodeproject.org/ENCBS446NMR/


title: DNase-seq from CD14-positive monocyte (ENCLB911GYJ)

description:
https://www.encodeproject.org/experiments/ENCSR451UAB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR451UAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB911GYJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: ENCBS304JSP at ENCODE; https://www.encodeproject.org/ENCBS304JSP/


title: DNase-seq from MCF-7 (ENCLB406OFL)

description:
https://www.encodeproject.org/experiments/ENCSR238UGH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR238UGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB406OFL

source_name: Homo sapiens MCF-7 cell line treated with 1 nM genistein for 2 hours

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS345LLO at ENCODE; https://www.encodeproject.org/ENCBS345LLO/


title: DNase-seq from MCF-7 (ENCLB973MMP)

description:
https://www.encodeproject.org/experiments/ENCSR238UGH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR238UGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB973MMP

value: cell line

value: adult

value: ATCC

value: ENCBS730YPE at ENCODE; https://www.encodeproject.org/ENCBS730YPE/


title: DNase-seq from MCF-7 (ENCLB300OML)

description:
https://www.encodeproject.org/experiments/ENCSR238UGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR238UGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB300OML

value: John Stamatoyannopoulos, UW

value: ENCBS929SDH at ENCODE; https://www.encodeproject.org/ENCBS929SDH/


title: DNase-seq from hippocampal formation (ENCLB092ZIX)

description:
https://www.encodeproject.org/experiments/ENCSR447LUI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR447LUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB092ZIX
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (82 years) hippocampal formation tissue

value: hippocampal formation

value: tissue

value: 82 year

value: Thomas Montine

value: ENCBS334BSC at ENCODE; https://www.encodeproject.org/ENCBS334BSC/


title: DNase-seq from CD14-positive monocyte (ENCLB327SUD)

description:
https://www.encodeproject.org/experiments/ENCSR229QWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR229QWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB327SUD

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS916WRN at ENCODE; https://www.encodeproject.org/ENCBS916WRN/


title: DNase-seq from MOLM-13 (ENCLB589ZUG)

description:
https://www.encodeproject.org/experiments/ENCSR446NCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR446NCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB589ZUG

source_name: Homo sapiens MOLM-13 cell line treated with 0.1% dmso for 144 hours

value: cell line

value: 20 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:144; duration_units:hour;

value: ENCBS634VNZ at ENCODE; https://www.encodeproject.org/ENCBS634VNZ/


title: DNase-seq from NCI-H2029 (ENCLB725MWC)

description:
https://www.encodeproject.org/experiments/ENCSR228WZM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR228WZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB725MWC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2029 cell line

value: female

value: adult

value: 69 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS959JZA at ENCODE; https://www.encodeproject.org/ENCBS959JZA/


title: DNase-seq from NCI-H2029 (ENCLB840YLE)

description:
https://www.encodeproject.org/experiments/ENCSR228WZM/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR228WZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB840YLE
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: ENCBS852MEG at ENCODE; https://www.encodeproject.org/ENCBS852MEG/


title: DNase-seq from NCI-H2029 (ENCLB145VAY)

description:
https://www.encodeproject.org/experiments/ENCSR228WZM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR228WZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145VAY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2029 cell line treated with 0.1% DMSO for 48 hours

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS767EFF at ENCODE; https://www.encodeproject.org/ENCBS767EFF/


title: DNase-seq from MCF-7 (ENCLB286NZF)

description:
https://www.encodeproject.org/experiments/ENCSR228KNZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR228KNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB286NZF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM genistein for 504 hours

value: breast cancer (adenocarcinoma)

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS386YKF at ENCODE; https://www.encodeproject.org/ENCBS386YKF/


title: DNase-seq from T47D (ENCLB007FXG)

description:
https://www.encodeproject.org/experiments/ENCSR212NFV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR212NFV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007FXG

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 2 hours

value: cell line

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS637QDG at ENCODE; https://www.encodeproject.org/ENCBS637QDG/


title: DNase-seq from NCI-H2029 (ENCLB393RZU)

description:
https://www.encodeproject.org/experiments/ENCSR228WZM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR228WZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB393RZU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: ENCBS787ZWQ at ENCODE; https://www.encodeproject.org/ENCBS787ZWQ/


title: DNase-seq from UCSD-AML1 (ENCLB070IUH)

description:
https://www.encodeproject.org/experiments/ENCSR437MOQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR437MOQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB070IUH
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens UCSD-AML1 cell line

value: adult

value: 73 year

value: DSMZ

value: ENCBS302QSQ at ENCODE; https://www.encodeproject.org/ENCBS302QSQ/


title: DNase-seq from K562 (ENCLB933GZR)

description:
https://www.encodeproject.org/experiments/ENCSR416PRI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR416PRI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB933GZR

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS654LTR at ENCODE; https://www.encodeproject.org/ENCBS654LTR/


title: DNase-seq from MCF-7 (ENCLB157MVJ)

description:
https://www.encodeproject.org/experiments/ENCSR228KNZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR228KNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB157MVJ

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS408ZDF at ENCODE; https://www.encodeproject.org/ENCBS408ZDF/


title: DNase-seq from MCF-7 (ENCLB336LTF)

description:
https://www.encodeproject.org/experiments/ENCSR228KNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR228KNZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB336LTF
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: ENCBS089DKG at ENCODE; https://www.encodeproject.org/ENCBS089DKG/


title: DNase-seq from brain (ENCLB613PEC)

description:
https://www.encodeproject.org/experiments/ENCSR447BIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR447BIL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB613PEC

source_name: Homo sapiens male adult (82 years) brain tissue

value: brain

value: tissue

value: male

value: 82 year

value: Thomas Montine

value: ENCBS147NVB at ENCODE; https://www.encodeproject.org/ENCBS147NVB/


title: DNase-seq from HL-60 (ENCLB211NOO)

description:
https://www.encodeproject.org/experiments/ENCSR420HTC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420HTC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB211NOO
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens HL-60 cell line

value: female

value: acute promyelocytic leukemia

value: adult

value: 36 year

value: ENCBS049OSA at ENCODE; https://www.encodeproject.org/ENCBS049OSA/


title: DNase-seq from pancreas (ENCLB639AGF)

description:
https://www.encodeproject.org/experiments/ENCSR423PMZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR423PMZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB639AGF

source_name: Homo sapiens male adult (37 years) pancreas tissue

value: pancreas

value: 37 year

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS331DTF at ENCODE; https://www.encodeproject.org/ENCBS331DTF/


title: DNase-seq from inflammatory macrophage (ENCLB217NXY)

description:
https://www.encodeproject.org/experiments/ENCSR280URP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR280URP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB217NXY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (21 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: 21 year

value: Shelly Heimfeld

value: ENCBS732AVI at ENCODE; https://www.encodeproject.org/ENCBS732AVI/


title: DNase-seq from inflammatory macrophage (ENCLB262PWH)

description:
https://www.encodeproject.org/experiments/ENCSR998XKB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR998XKB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB262PWH
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

value: male

value: ENCBS955IYV at ENCODE; https://www.encodeproject.org/ENCBS955IYV/


title: DNase-seq from T47D (ENCLB942TRA)

description:
https://www.encodeproject.org/experiments/ENCSR994VNR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR994VNR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB942TRA
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 uM methoxychlor for 504 hours

value: cell line

value: female

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS930YZH at ENCODE; https://www.encodeproject.org/ENCBS930YZH/


title: DNase-seq from NCI-H526 (ENCLB891QEQ)

description:
https://www.encodeproject.org/experiments/ENCSR209QRA/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR209QRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB891QEQ

source_name: Homo sapiens NCI-H526 cell line

value: adult

value: 55 year

value: John Stamatoyannopoulos, UW

value: ENCBS604BNP at ENCODE; https://www.encodeproject.org/ENCBS604BNP/


title: DNase-seq from OCI-AML2 (ENCLB797FUU)

description:
https://www.encodeproject.org/experiments/ENCSR409DBT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR409DBT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB797FUU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens OCI-AML2 cell line treated with 0.1% DMSO for 48 hours

value: 65 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS186IYE at ENCODE; https://www.encodeproject.org/ENCBS186IYE/


title: DNase-seq from NCI-H526 (ENCLB136WZU)

description:
https://www.encodeproject.org/experiments/ENCSR209QRA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR209QRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB136WZU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: male

value: ENCBS953EHJ at ENCODE; https://www.encodeproject.org/ENCBS953EHJ/


title: DNase-seq from MCF-7 (ENCLB830YAB)

description:
https://www.encodeproject.org/experiments/ENCSR996CIQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR996CIQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB830YAB

source_name: Homo sapiens MCF-7 cell line treated with 4 uM bisphenol a for 504 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS417VJZ at ENCODE; https://www.encodeproject.org/ENCBS417VJZ/


title: DNase-seq from T47D (ENCLB790KCB)

description:
https://www.encodeproject.org/experiments/ENCSR212NFV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR212NFV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB790KCB
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS628MEI at ENCODE; https://www.encodeproject.org/ENCBS628MEI/


title: DNase-seq from CD14-positive monocyte (ENCLB223RDK)

description:
https://www.encodeproject.org/experiments/ENCSR201XLV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR201XLV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB223RDK
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: CD14-positive monocyte

value: primary cell

value: adult

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS501PNT at ENCODE; https://www.encodeproject.org/ENCBS501PNT/


title: DNase-seq from T47D (ENCLB499SOG)

description:
https://www.encodeproject.org/experiments/ENCSR435ICG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR435ICG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB499SOG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM genistein for 2 hours

value: cell line

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS016PIQ at ENCODE; https://www.encodeproject.org/ENCBS016PIQ/


title: DNase-seq from NCI-H526 (ENCLB967UQC)

description:
https://www.encodeproject.org/experiments/ENCSR209QRA/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR209QRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB967UQC

value: male

value: 55 year

value: ENCBS596EVV at ENCODE; https://www.encodeproject.org/ENCBS596EVV/


title: DNase-seq from T47D (ENCLB226TAA)

description:
https://www.encodeproject.org/experiments/ENCSR974OOY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR974OOY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB226TAA

source_name: Homo sapiens T47D cell line treated with 100 nM methoxychlor for 2 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS865CPW at ENCODE; https://www.encodeproject.org/ENCBS865CPW/


title: DNase-seq from NCI-H526 (ENCLB297KLP)

description:
https://www.encodeproject.org/experiments/ENCSR209QRA/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR209QRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB297KLP

value: adult

value: ENCBS699PHL at ENCODE; https://www.encodeproject.org/ENCBS699PHL/


title: DNase-seq from T47D (ENCLB484YKU)

description:
https://www.encodeproject.org/experiments/ENCSR970IJN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR970IJN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB484YKU
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 120 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS330UTG at ENCODE; https://www.encodeproject.org/ENCBS330UTG/


title: DNase-seq from MCF-7 (ENCLB267NKV)

description:
https://www.encodeproject.org/experiments/ENCSR978MRT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR978MRT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB267NKV

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 120 hours

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS079UVW at ENCODE; https://www.encodeproject.org/ENCBS079UVW/


title: DNase-seq from MCF-7 (ENCLB031XFF)

description:
https://www.encodeproject.org/experiments/ENCSR967BTM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR967BTM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB031XFF

source_name: Homo sapiens MCF-7 cell line treated with 10 nM genistein for 120 hours

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS651EMA at ENCODE; https://www.encodeproject.org/ENCBS651EMA/


title: DNase-seq from putamen (ENCLB858GOU)

description:
https://www.encodeproject.org/experiments/ENCSR970HYV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR970HYV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB858GOU

source_name: Homo sapiens male adult (87 years) putamen tissue

value: putamen

value: tissue

value: male

value: 87 year

value: Thomas Montine

value: ENCBS894OKG at ENCODE; https://www.encodeproject.org/ENCBS894OKG/


title: DNase-seq from MCF-7 (ENCLB647VJL)

description:
https://www.encodeproject.org/experiments/ENCSR961EUI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR961EUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB647VJL

source_name: Homo sapiens MCF-7 cell line treated with 50 nM bisphenol a for 2 hours

value: female

value: adult

value: ATCC

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS241YOR at ENCODE; https://www.encodeproject.org/ENCBS241YOR/