title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB213MXC)

description:
https://www.encodeproject.org/experiments/ENCSR071CAW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR071CAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB213MXC

source_name: Homo sapiens male adult (30 years) CD8-positive, alpha-beta memory T primary cell

value: CD8-positive, alpha-beta memory T cell

value: male

value: adult

value: 30 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS494GOF at ENCODE; https://www.encodeproject.org/ENCBS494GOF/


title: Flow-FISH CRISPR screen from K562 (ENCLB780FYR)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB780FYR
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS732PMF at ENCODE; https://www.encodeproject.org/ENCBS732PMF/


title: DNase-seq from K562 (ENCLB352BDT)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB352BDT

source_name: Homo sapiens K562 cell line

value: ENCBS975GFU at ENCODE; https://www.encodeproject.org/ENCBS975GFU/


title: Flow-FISH CRISPR screen from K562 (ENCLB804DFO)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB804DFO
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB493WGQ)

description:
https://www.encodeproject.org/experiments/ENCSR071CAW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR071CAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB493WGQ

value: primary cell

value: ENCBS328KKQ at ENCODE; https://www.encodeproject.org/ENCBS328KKQ/


title: PRO-cap from cytotoxic T cell (ENCLB454VZC)

description:
https://www.encodeproject.org/experiments/ENCSR069DQH/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cytotoxic T cells.
experiment encode accession: ENCSR069DQH
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB454VZC

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens cytotoxic T primary cell

value: cytotoxic T cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS901WDC at ENCODE; https://www.encodeproject.org/ENCBS901WDC/


title: Flow-FISH CRISPR screen from K562 (ENCLB589HQN)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB589HQN
size range: 200-210

value: adult

value: ENCBS503ZUJ at ENCODE; https://www.encodeproject.org/ENCBS503ZUJ/


title: DNase-seq from CD8-positive, alpha-beta memory T cell (ENCLB279JUO)

description:
https://www.encodeproject.org/experiments/ENCSR071CAW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR071CAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB279JUO

value: CD8-positive, alpha-beta memory T cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS758IRB at ENCODE; https://www.encodeproject.org/ENCBS758IRB/


title: DNase-seq from K562 (ENCLB111SSL)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 7
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB111SSL

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: long read scRNA-seq from adrenal gland (ENCLB604JNG)

description:
https://www.encodeproject.org/experiments/ENCSR423FFY/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P36 female normal 2k
experiment encode accession: ENCSR423FFY
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB604JNG
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

organism: Mus musculus

source_name: Mus musculus strain B6CASTF1/J female postnatal (36 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

tag: description

value: B6/Cast F1 adrenal P36 female 2

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

tag: subcellular fraction term name

value: nucleus

value: The Jackson Laboratory

value: ENCBS231UDN at ENCODE; https://www.encodeproject.org/ENCBS231UDN/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from layer of hippocampus (ENCLB274PAK)

description:
https://www.encodeproject.org/experiments/ENCSR232UUS/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P25 female normal 2k
experiment encode accession: ENCSR232UUS
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB274PAK
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (25 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: B6/Cast F1 hippocampus P25 female 1

value: 25 day

value: ENCBS998IGC at ENCODE; https://www.encodeproject.org/ENCBS998IGC/


title: long read scRNA-seq from adrenal gland (ENCLB031FLB)

description:
https://www.encodeproject.org/experiments/ENCSR239HYJ/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P4 female normal 2k
experiment encode accession: ENCSR239HYJ
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB031FLB
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (4 days) adrenal gland tissue nuclear fraction

value: B6/Cast F1 adrenal P4 female 1

value: female

value: 4 day

value: ENCBS326PIL at ENCODE; https://www.encodeproject.org/ENCBS326PIL/


title: DNase-seq from K562 (ENCLB289JNK)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 10
technical replicate number: 7
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB289JNK

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS831YDU at ENCODE; https://www.encodeproject.org/ENCBS831YDU/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB251EOG)

description:
https://www.encodeproject.org/experiments/ENCSR067MLO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR067MLO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB251EOG

source_name: Homo sapiens female adult (51 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: 51 year

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS530KDM at ENCODE; https://www.encodeproject.org/ENCBS530KDM/


title: Flow-FISH CRISPR screen from K562 (ENCLB622LKC)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB622LKC
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS503ZUJ at ENCODE; https://www.encodeproject.org/ENCBS503ZUJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB860ZTT)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860ZTT
size range: 200-210

value: female

value: ENCBS732PMF at ENCODE; https://www.encodeproject.org/ENCBS732PMF/


title: DNase-seq from K562 (ENCLB957DCU)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 17
technical replicate number: 4
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB957DCU

value: ENCBS573VAK at ENCODE; https://www.encodeproject.org/ENCBS573VAK/


title: DNase-seq from K562 (ENCLB732UGL)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 20
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB732UGL

value: cell line

value: ENCBS308YKC at ENCODE; https://www.encodeproject.org/ENCBS308YKC/


title: DNase-seq from K562 (ENCLB999PJJ)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 41
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB999PJJ

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS878EFH at ENCODE; https://www.encodeproject.org/ENCBS878EFH/


title: long read scRNA-seq from layer of hippocampus (ENCLB014VGC)

description:
https://www.encodeproject.org/experiments/ENCSR917FMK/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P25 male normal 2k
experiment encode accession: ENCSR917FMK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB014VGC
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (25 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P25 male 1

value: male

value: postnatal

value: 25 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS747PJX at ENCODE; https://www.encodeproject.org/ENCBS747PJX/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: PRO-cap from left lobe of liver (ENCLB459FIU)

description:
https://www.encodeproject.org/experiments/ENCSR065QHA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left lobe of liver.
experiment encode accession: ENCSR065QHA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB459FIU

source_name: Homo sapiens male adult (45 years) left lobe of liver tissue

value: left lobe of liver

value: DM:no; HTN:yes; CAD:no

value: 45 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS089LIV at ENCODE; https://www.encodeproject.org/ENCBS089LIV/


title: long read scRNA-seq from layer of hippocampus (ENCLB662WCC)

description:
https://www.encodeproject.org/experiments/ENCSR917FMK/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P25 male normal 2k
experiment encode accession: ENCSR917FMK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB662WCC
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: layer of hippocampus

value: B6/Cast F1 hippocampus P25 male 2

value: ENCBS929ZLW at ENCODE; https://www.encodeproject.org/ENCBS929ZLW/


title: DNase-seq from K562 (ENCLB591PIR)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 45
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB591PIR

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS664YJR at ENCODE; https://www.encodeproject.org/ENCBS664YJR/


title: Flow-FISH CRISPR screen from K562 (ENCLB948PKI)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB948PKI
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS576UYR at ENCODE; https://www.encodeproject.org/ENCBS576UYR/


title: Flow-FISH CRISPR screen from K562 (ENCLB959QAL)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB959QAL
size range: 200-210

value: ENCBS732PMF at ENCODE; https://www.encodeproject.org/ENCBS732PMF/


title: PRO-cap from left lobe of liver (ENCLB992UBW)

description:
https://www.encodeproject.org/experiments/ENCSR065QHA/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left lobe of liver.
experiment encode accession: ENCSR065QHA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB992UBW

value: left lobe of liver

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no

value: 45 year

value: Haiyuan Yu, Cornell


title: PRO-cap from T-cell (ENCLB546FHF)

description:
https://www.encodeproject.org/experiments/ENCSR065NDB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in T cells from T1D donor.
experiment encode accession: ENCSR065NDB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB546FHF

source_name: Homo sapiens female adult (22 years) with type 1 diabetes mellitus; T-cell primary cell

value: T-cell

value: primary cell

value: 22 year

value: Dieter Egli

value: ENCBS373SRI at ENCODE; https://www.encodeproject.org/ENCBS373SRI/


title: Flow-FISH CRISPR screen from K562 (ENCLB320BTW)

description:
https://www.encodeproject.org/experiments/ENCSR048WSZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR048WSZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB320BTW
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS503ZUJ at ENCODE; https://www.encodeproject.org/ENCBS503ZUJ/


title: PRO-cap from cerebellum (ENCLB325FXV)

description:
https://www.encodeproject.org/experiments/ENCSR062QYF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.
experiment encode accession: ENCSR062QYF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB325FXV

source_name: Homo sapiens female adult (43 years) cerebellum tissue

value: cerebellum

value: 43 year

value: CHTN

value: ENCBS943RRD at ENCODE; https://www.encodeproject.org/ENCBS943RRD/


title: long read scRNA-seq from adrenal gland (ENCLB942YOE)

description:
https://www.encodeproject.org/experiments/ENCSR899YHN/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P36 male normal 2k
experiment encode accession: ENCSR899YHN
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB942YOE
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (36 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P36 male 2

value: male

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS815NZI at ENCODE; https://www.encodeproject.org/ENCBS815NZI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from adrenal gland (ENCLB783MHQ)

description:
https://www.encodeproject.org/experiments/ENCSR899YHN/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P36 male normal 2k
experiment encode accession: ENCSR899YHN
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB783MHQ
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: B6/Cast F1 adrenal P36 male 1

value: ENCBS254HFK at ENCODE; https://www.encodeproject.org/ENCBS254HFK/


title: PRO-cap from cerebellum (ENCLB096IRX)

description:
https://www.encodeproject.org/experiments/ENCSR062QYF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.
experiment encode accession: ENCSR062QYF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB096IRX

value: cerebellum

value: female

value: adult

value: Haiyuan Yu, Cornell


title: DNase-seq from K562 (ENCLB112ENP)

description:
https://www.encodeproject.org/experiments/ENCSR047PMJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR047PMJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB112ENP

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS604HHY at ENCODE; https://www.encodeproject.org/ENCBS604HHY/


title: long read scRNA-seq from adrenal gland (ENCLB976CBB)

description:
https://www.encodeproject.org/experiments/ENCSR423FFY/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P36 female normal 2k
experiment encode accession: ENCSR423FFY
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB976CBB
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P36 female 1

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

value: ENCBS291QIZ at ENCODE; https://www.encodeproject.org/ENCBS291QIZ/


title: DNase-seq from K562 (ENCLB443AQR)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 3
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB443AQR

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: DNase-seq from K562 (ENCLB569KWS)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 19
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB569KWS

value: female

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: long read scRNA-seq from adrenal gland (ENCLB978QNT)

description:
https://www.encodeproject.org/experiments/ENCSR766SVW/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P18-20mo male normal 2k
experiment encode accession: ENCSR766SVW
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB978QNT
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male adult (18-20 months) adrenal gland tissue nuclear fraction

value: B6/Cast F1 adrenal P18-20mo male 2

value: male

value: adult

value: 18-20 month

value: nucleus

value: The Jackson Laboratory

value: ENCBS997ZIT at ENCODE; https://www.encodeproject.org/ENCBS997ZIT/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB470UBH)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 9
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB470UBH

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB914CTS)

description:
https://www.encodeproject.org/experiments/ENCSR047OET/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR047OET
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914CTS

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 37 year

value: Shelly Heimfeld

value: ENCBS976OFG at ENCODE; https://www.encodeproject.org/ENCBS976OFG/


title: long read scRNA-seq from adrenal gland (ENCLB862VQJ)

description:
https://www.encodeproject.org/experiments/ENCSR766SVW/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P18-20mo male normal 2k
experiment encode accession: ENCSR766SVW
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB862VQJ
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P18-20mo male 1

value: male

value: Ali Mortazavi, UCI

value: ENCBS621RNE at ENCODE; https://www.encodeproject.org/ENCBS621RNE/


title: DNase-seq from K562 (ENCLB749PRT)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 8
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB749PRT

value: female

value: adult

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: long read scRNA-seq from adrenal gland (ENCLB658RKY)

description:
https://www.encodeproject.org/experiments/ENCSR741JGK/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P25 female normal 2k
experiment encode accession: ENCSR741JGK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB658RKY
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (25 days) adrenal gland tissue nuclear fraction

value: B6/Cast F1 adrenal P25 female 1

value: postnatal

value: 25 day

value: nucleus

value: The Jackson Laboratory

value: ENCBS321JYG at ENCODE; https://www.encodeproject.org/ENCBS321JYG/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from globus pallidus (ENCLB240RPC)

description:
https://www.encodeproject.org/experiments/ENCSR047NWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR047NWZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB240RPC

source_name: Homo sapiens male adult (87 years) globus pallidus tissue

value: globus pallidus

value: 87 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS711PVQ at ENCODE; https://www.encodeproject.org/ENCBS711PVQ/


title: PRO-cap from cerebellum (ENCLB308JTD)

description:
https://www.encodeproject.org/experiments/ENCSR053UMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cerebellum.
experiment encode accession: ENCSR053UMZ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB308JTD

source_name: Homo sapiens cerebellum tissue

value: cerebellum

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS520EZA at ENCODE; https://www.encodeproject.org/ENCBS520EZA/


title: DNase-seq from K562 (ENCLB272HAQ)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 10
technical replicate number: 11
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB272HAQ

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS831YDU at ENCODE; https://www.encodeproject.org/ENCBS831YDU/


title: Control CRISPR screen from K562 (ENCLB889FPR)

description:
https://www.encodeproject.org/experiments/ENCSR048GGL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR048GGL
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB889FPR

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 0 days after the sample was treated with Puromycin

tag: passage number

value: Yin Shen, UCSF

value: ENCBS490LVP at ENCODE; https://www.encodeproject.org/ENCBS490LVP/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB421ZAR)

description:
https://www.encodeproject.org/experiments/ENCSR056UNT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR056UNT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB421ZAR

source_name: Homo sapiens female adult (54 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: 54 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS504HUR at ENCODE; https://www.encodeproject.org/ENCBS504HUR/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB416OFN)

description:
https://www.encodeproject.org/experiments/ENCSR046CHZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR046CHZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB416OFN

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS957EVH at ENCODE; https://www.encodeproject.org/ENCBS957EVH/


title: long read scRNA-seq from adrenal gland (ENCLB030TMP)

description:
https://www.encodeproject.org/experiments/ENCSR741JGK/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P25 female normal 2k
experiment encode accession: ENCSR741JGK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB030TMP
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P25 female 2

value: female

value: postnatal

value: 25 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS711QUR at ENCODE; https://www.encodeproject.org/ENCBS711QUR/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB270FPD)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 9
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB270FPD

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: Control CRISPR screen from K562 (ENCLB556RJH)

description:
https://www.encodeproject.org/experiments/ENCSR048GGL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control for CRISPR screen targeting candidate CREs
experiment encode accession: ENCSR048GGL
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB556RJH

value: Yin Shen, UCSF

value: ENCBS037ZGT at ENCODE; https://www.encodeproject.org/ENCBS037ZGT/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB541KAH)

description:
https://www.encodeproject.org/experiments/ENCSR045NQF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR045NQF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB541KAH

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: AllCells

value: ENCBS061RNE at ENCODE; https://www.encodeproject.org/ENCBS061RNE/


title: long read scRNA-seq from layer of hippocampus (ENCLB482IWH)

description:
https://www.encodeproject.org/experiments/ENCSR683IIF/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P2mo female normal 2k
experiment encode accession: ENCSR683IIF
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB482IWH
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female adult (2 months) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P2mo female 2

value: female

value: 2 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS772CYI at ENCODE; https://www.encodeproject.org/ENCBS772CYI/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB255FPW)

description:
https://www.encodeproject.org/experiments/ENCSR045NQF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR045NQF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB255FPW

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS123VIC at ENCODE; https://www.encodeproject.org/ENCBS123VIC/


title: long read scRNA-seq from layer of hippocampus (ENCLB760PUK)

description:
https://www.encodeproject.org/experiments/ENCSR683IIF/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P2mo female normal 2k
experiment encode accession: ENCSR683IIF
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB760PUK
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: B6/Cast F1 hippocampus P2mo female 1

value: ENCBS554AFJ at ENCODE; https://www.encodeproject.org/ENCBS554AFJ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: PRO-cap from urinary bladder (ENCLB122HRD)

description:
https://www.encodeproject.org/experiments/ENCSR045XAW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bladder.
experiment encode accession: ENCSR045XAW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB122HRD

source_name: Homo sapiens female adult (67 years) urinary bladder tissue

value: urinary bladder

value: 67 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS131AOJ at ENCODE; https://www.encodeproject.org/ENCBS131AOJ/


title: DNase-seq from immature natural killer cell (ENCLB914ZIZ)

description:
https://www.encodeproject.org/experiments/ENCSR044SGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR044SGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914ZIZ

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: male

value: 30 year

value: Shelly Heimfeld

value: ENCBS512FUU at ENCODE; https://www.encodeproject.org/ENCBS512FUU/


title: DNase-seq from K562 (ENCLB753TCW)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 7
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB753TCW

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: long read scRNA-seq from layer of hippocampus (ENCLB821KKV)

description:
https://www.encodeproject.org/experiments/ENCSR170VWE/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P36 male normal 2k
experiment encode accession: ENCSR170VWE
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB821KKV
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (36 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P36 male 1

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS894OAU at ENCODE; https://www.encodeproject.org/ENCBS894OAU/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB358KSR)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 18
technical replicate number: 7
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB358KSR

value: cell line

value: John Stamatoyannopoulos, UW

value: ENCBS275QRX at ENCODE; https://www.encodeproject.org/ENCBS275QRX/


title: DNase-seq from K562 (ENCLB409DGG)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 10
technical replicate number: 9
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB409DGG

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS831YDU at ENCODE; https://www.encodeproject.org/ENCBS831YDU/


title: PRO-cap from urinary bladder (ENCLB652TST)

description:
https://www.encodeproject.org/experiments/ENCSR045XAW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bladder.
experiment encode accession: ENCSR045XAW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB652TST

value: urinary bladder

value: 67 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS131AOJ at ENCODE; https://www.encodeproject.org/ENCBS131AOJ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB898YEK)

description:
https://www.encodeproject.org/experiments/ENCSR044QVE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR044QVE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB898YEK

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 26 year

value: Shelly Heimfeld

value: ENCBS886WCP at ENCODE; https://www.encodeproject.org/ENCBS886WCP/


title: DNase-seq from K562 (ENCLB582UNJ)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 13
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB582UNJ

value: cell line

value: 53 year

value: ATCC

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: DNase-seq from activated T-cell (ENCLB375YCE)

description:
https://www.encodeproject.org/experiments/ENCSR045TEW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR045TEW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB375YCE

source_name: Homo sapiens male adult (19 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: male

value: 19 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS672KZT at ENCODE; https://www.encodeproject.org/ENCBS672KZT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB608VKS)

description:
https://www.encodeproject.org/experiments/ENCSR043OPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR043OPR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB608VKS

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-2 for 1 hour

value: female

value: adult

value: 34 year

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS564LKY at ENCODE; https://www.encodeproject.org/ENCBS564LKY/


title: long read scRNA-seq from layer of hippocampus (ENCLB246LTH)

description:
https://www.encodeproject.org/experiments/ENCSR674HUF/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P2mo male normal 2k
experiment encode accession: ENCSR674HUF
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB246LTH
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male adult (2 months) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P2mo male 1

value: 2 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS246YKO at ENCODE; https://www.encodeproject.org/ENCBS246YKO/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from layer of hippocampus (ENCLB792HEL)

description:
https://www.encodeproject.org/experiments/ENCSR170VWE/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P36 male normal 2k
experiment encode accession: ENCSR170VWE
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB792HEL
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: B6/Cast F1 hippocampus P36 male 2

value: male

value: postnatal

value: 36 day

value: ENCBS373BVD at ENCODE; https://www.encodeproject.org/ENCBS373BVD/


title: DNase-seq from activated T-cell (ENCLB450NRV)

description:
https://www.encodeproject.org/experiments/ENCSR045TEW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR045TEW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB450NRV

value: activated T-cell

value: primary cell

value: adult

value: 19 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS515DDW at ENCODE; https://www.encodeproject.org/ENCBS515DDW/


title: long read scRNA-seq from layer of hippocampus (ENCLB633OZV)

description:
https://www.encodeproject.org/experiments/ENCSR674HUF/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P2mo male normal 2k
experiment encode accession: ENCSR674HUF
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB633OZV
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P2mo male 2

value: 2 month

value: Ali Mortazavi, UCI

value: nucleus

value: ENCBS066BIL at ENCODE; https://www.encodeproject.org/ENCBS066BIL/


title: DNase-seq from K562 (ENCLB842EWN)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 22
technical replicate number: 7
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB842EWN

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS769NZR at ENCODE; https://www.encodeproject.org/ENCBS769NZR/


title: DNase-seq from T-helper 17 cell (ENCLB345LBA)

description:
https://www.encodeproject.org/experiments/ENCSR041OZM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR041OZM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB345LBA

source_name: Homo sapiens male adult (56 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: male

value: adult

value: 56 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS924PUO at ENCODE; https://www.encodeproject.org/ENCBS924PUO/


title: DNase-seq from K562 (ENCLB396HVF)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 100
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB396HVF

value: ENCBS858JKZ at ENCODE; https://www.encodeproject.org/ENCBS858JKZ/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB751PCS)

description:
https://www.encodeproject.org/experiments/ENCSR040VOK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR040VOK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB751PCS

source_name: Homo sapiens male adult (45 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: 45 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS993RBX at ENCODE; https://www.encodeproject.org/ENCBS993RBX/


title: long read scRNA-seq from adrenal gland (ENCLB141EBH)

description:
https://www.encodeproject.org/experiments/ENCSR673ZVY/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P18-20mo female normal 2k
experiment encode accession: ENCSR673ZVY
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB141EBH
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female adult (18-20 months) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P18-20mo female 1

value: female

value: 18-20 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS537RFX at ENCODE; https://www.encodeproject.org/ENCBS537RFX/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB725IEY)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 21
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB725IEY

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: DNase-seq from B cell (ENCLB980DSY)

description:
https://www.encodeproject.org/experiments/ENCSR040SOG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR040SOG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB980DSY

source_name: Homo sapiens male adult (22 years) B primary cell

value: B cell

value: primary cell

value: male

value: 22 year

value: AllCells

value: ENCBS541QWV at ENCODE; https://www.encodeproject.org/ENCBS541QWV/


title: DNase-seq from activated T-helper 1 cell (ENCLB297FPX)

description:
https://www.encodeproject.org/experiments/ENCSR040KQV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR040KQV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB297FPX

source_name: Homo sapiens female adult (33 years) activated T-helper 1 primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: activated T-helper 1 cell

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS925APP at ENCODE; https://www.encodeproject.org/ENCBS925APP/


title: DNase-seq from K562 (ENCLB643XRC)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 43
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB643XRC

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS735NUD at ENCODE; https://www.encodeproject.org/ENCBS735NUD/


title: DNase-seq from activated T-cell (ENCLB097QPD)

description:
https://www.encodeproject.org/experiments/ENCSR045TEW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR045TEW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB097QPD

value: activated T-cell

value: adult

value: 19 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS025NCL at ENCODE; https://www.encodeproject.org/ENCBS025NCL/


title: DNase-seq from K562 (ENCLB592WHQ)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 14
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB592WHQ

value: 53 year

value: ATCC

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: DNase-seq from activated T-cell (ENCLB295JOB)

description:
https://www.encodeproject.org/experiments/ENCSR031UKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR031UKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB295JOB

source_name: Homo sapiens male adult (45 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: male

value: 45 year

value: ENCBS137NOT at ENCODE; https://www.encodeproject.org/ENCBS137NOT/


title: PRO-cap from right common carotid artery plus branches (ENCLB673KVJ)

description:
https://www.encodeproject.org/experiments/ENCSR023NXW/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right carotid artery.
experiment encode accession: ENCSR023NXW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB673KVJ

source_name: Homo sapiens right common carotid artery plus branches tissue

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS241CLX at ENCODE; https://www.encodeproject.org/ENCBS241CLX/


title: long read scRNA-seq from adrenal gland (ENCLB459KXS)

description:
https://www.encodeproject.org/experiments/ENCSR641RYW/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P4 male normal 2k
experiment encode accession: ENCSR641RYW
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB459KXS
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (4 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: B6/Cast F1 adrenal P4 male 2

value: postnatal

value: 4 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS112ZTO at ENCODE; https://www.encodeproject.org/ENCBS112ZTO/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from activated T-cell (ENCLB465THJ)

description:
https://www.encodeproject.org/experiments/ENCSR031UKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR031UKN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB465THJ

value: activated T-cell

value: primary cell

value: male

value: adult

value: 45 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS227KMO at ENCODE; https://www.encodeproject.org/ENCBS227KMO/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB733NGG)

description:
https://www.encodeproject.org/experiments/ENCSR038NGR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR038NGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB733NGG

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours

value: female

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS161GEJ at ENCODE; https://www.encodeproject.org/ENCBS161GEJ/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB440QJJ)

description:
https://www.encodeproject.org/experiments/ENCSR038NGR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR038NGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440QJJ

value: ENCBS512WHP at ENCODE; https://www.encodeproject.org/ENCBS512WHP/


title: DNase-seq from K562 (ENCLB522XMH)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB522XMH

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS544ABY at ENCODE; https://www.encodeproject.org/ENCBS544ABY/


title: PRO-cap from right common carotid artery plus branches (ENCLB596JRJ)

description:
https://www.encodeproject.org/experiments/ENCSR023NXW/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right carotid artery.
experiment encode accession: ENCSR023NXW
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB596JRJ

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Ahmed Mohyeldin

value: ENCBS241CLX at ENCODE; https://www.encodeproject.org/ENCBS241CLX/


title: long read scRNA-seq from layer of hippocampus (ENCLB379LYX)

description:
https://www.encodeproject.org/experiments/ENCSR637ORL/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P14 female normal 2k
experiment encode accession: ENCSR637ORL
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB379LYX
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (14 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: B6/Cast F1 hippocampus P14 female 2

value: female

value: postnatal

value: 14 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS300KQE at ENCODE; https://www.encodeproject.org/ENCBS300KQE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB608WXI)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 5
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB608WXI

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: long read scRNA-seq from adrenal gland (ENCLB265QJN)

description:
https://www.encodeproject.org/experiments/ENCSR673ZVY/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P18-20mo female normal 2k
experiment encode accession: ENCSR673ZVY
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB265QJN
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P18-20mo female 2

value: 18-20 month

value: ENCBS336XYG at ENCODE; https://www.encodeproject.org/ENCBS336XYG/


title: Control CRISPR screen from WTC11 (ENCLB596TUB)

description:
https://www.encodeproject.org/experiments/ENCSR019PDV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR019PDV
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB596TUB

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS368VYT at ENCODE; https://www.encodeproject.org/ENCBS368VYT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB249IXB)

description:
https://www.encodeproject.org/experiments/ENCSR036ZBI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR036ZBI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB249IXB

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 42 year

value: AllCells

value: ENCBS697OND at ENCODE; https://www.encodeproject.org/ENCBS697OND/


title: DNase-seq from caudate nucleus (ENCLB805YIO)

description:
https://www.encodeproject.org/experiments/ENCSR038QGU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR038QGU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB805YIO

source_name: Homo sapiens male adult (82 years) caudate nucleus tissue

value: caudate nucleus

value: adult

value: 82 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS507IJZ at ENCODE; https://www.encodeproject.org/ENCBS507IJZ/


title: long read scRNA-seq from adrenal gland (ENCLB403AGG)

description:
https://www.encodeproject.org/experiments/ENCSR628CKI/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P10 female normal 2k
experiment encode accession: ENCSR628CKI
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB403AGG
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (10 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P10 female 1

value: female

value: postnatal

value: 10 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS789TOM at ENCODE; https://www.encodeproject.org/ENCBS789TOM/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from layer of hippocampus (ENCLB264VFZ)

description:
https://www.encodeproject.org/experiments/ENCSR637ORL/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P14 female normal 2k
experiment encode accession: ENCSR637ORL
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB264VFZ
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: layer of hippocampus

value: B6/Cast F1 hippocampus P14 female 1

value: 14 day

value: ENCBS454DBZ at ENCODE; https://www.encodeproject.org/ENCBS454DBZ/


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB572WWK)

description:
https://www.encodeproject.org/experiments/ENCSR036REG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR036REG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB572WWK

source_name: Homo sapiens female adult (33 years) CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS519SID at ENCODE; https://www.encodeproject.org/ENCBS519SID/


title: DNase-seq from K562 (ENCLB530XGX)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 10
technical replicate number: 18
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB530XGX

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS831YDU at ENCODE; https://www.encodeproject.org/ENCBS831YDU/


title: DNase-seq from K562 (ENCLB881KPM)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 9
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB881KPM

value: ENCBS152IHC at ENCODE; https://www.encodeproject.org/ENCBS152IHC/


title: DNase-seq from HCT116 (ENCLB070ZHZ)

description:
https://www.encodeproject.org/experiments/ENCSR017OUV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR017OUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB070ZHZ

source_name: Homo sapiens HCT116 cell line

value: male

value: colorectal carcinoma

value: 48 year

value: Erez Aiden

value: ENCBS184QBH at ENCODE; https://www.encodeproject.org/ENCBS184QBH/


title: Flow-FISH CRISPR screen from K562 (ENCLB711XFU)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB711XFU
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS733URR at ENCODE; https://www.encodeproject.org/ENCBS733URR/


title: long read scRNA-seq from adrenal gland (ENCLB844SVT)

description:
https://www.encodeproject.org/experiments/ENCSR641RYW/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P4 male normal 2k
experiment encode accession: ENCSR641RYW
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB844SVT
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P4 male 1

value: postnatal

value: 4 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS865NYD at ENCODE; https://www.encodeproject.org/ENCBS865NYD/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from adrenal gland (ENCLB873ARR)

description:
https://www.encodeproject.org/experiments/ENCSR628CKI/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P10 female normal 2k
experiment encode accession: ENCSR628CKI
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB873ARR
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: B6/Cast F1 adrenal P10 female 2

value: female

value: 10 day

value: ENCBS204TIR at ENCODE; https://www.encodeproject.org/ENCBS204TIR/


title: Flow-FISH CRISPR screen from K562 (ENCLB961OGK)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB961OGK
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ATCC

value: ENCBS464LHY at ENCODE; https://www.encodeproject.org/ENCBS464LHY/


title: DNase-seq from K562 (ENCLB317HMW)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB317HMW

value: John Stamatoyannopoulos, UW

value: ENCBS975GFU at ENCODE; https://www.encodeproject.org/ENCBS975GFU/


title: Flow-FISH CRISPR screen from K562 (ENCLB372LGK)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB372LGK
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS733URR at ENCODE; https://www.encodeproject.org/ENCBS733URR/


title: DNase-seq from HCT116 (ENCLB181FNI)

description:
https://www.encodeproject.org/experiments/ENCSR017OUV/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR017OUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB181FNI

value: male

value: colorectal carcinoma

value: 48 year

value: Erez Aiden

value: ENCBS818LOY at ENCODE; https://www.encodeproject.org/ENCBS818LOY/


title: long read scRNA-seq from adrenal gland (ENCLB019KWP)

description:
https://www.encodeproject.org/experiments/ENCSR604HPH/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P14 male normal 2k
experiment encode accession: ENCSR604HPH
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB019KWP
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (14 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P14 male 2

value: postnatal

value: 14 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS364VBE at ENCODE; https://www.encodeproject.org/ENCBS364VBE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from HCT116 (ENCLB669AXX)

description:
https://www.encodeproject.org/experiments/ENCSR017OUV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR017OUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB669AXX

value: cell line

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS908HEC at ENCODE; https://www.encodeproject.org/ENCBS908HEC/


title: Control CRISPR screen from WTC11 (ENCLB522VDO)

description:
https://www.encodeproject.org/experiments/ENCSR019PDV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR019PDV
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB522VDO

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS712ZCE at ENCODE; https://www.encodeproject.org/ENCBS712ZCE/


title: DNase-seq from K562 (ENCLB548PHX)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 17
technical replicate number: 3
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB548PHX

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS573VAK at ENCODE; https://www.encodeproject.org/ENCBS573VAK/


title: Flow-FISH CRISPR screen from K562 (ENCLB089WXS)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB089WXS
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS464LHY at ENCODE; https://www.encodeproject.org/ENCBS464LHY/


title: DNase-seq from K562 (ENCLB945RMJ)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 10
technical replicate number: 16
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB945RMJ

value: ENCBS831YDU at ENCODE; https://www.encodeproject.org/ENCBS831YDU/


title: long read scRNA-seq from adrenal gland (ENCLB955XHB)

description:
https://www.encodeproject.org/experiments/ENCSR604HPH/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P14 male normal 2k
experiment encode accession: ENCSR604HPH
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB955XHB
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P14 male 1

value: postnatal

value: 14 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS459ROD at ENCODE; https://www.encodeproject.org/ENCBS459ROD/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: Flow-FISH CRISPR screen from K562 (ENCLB776HDR)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB776HDR
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS733URR at ENCODE; https://www.encodeproject.org/ENCBS733URR/


title: DNase-seq from K562 (ENCLB663SRR)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 41
technical replicate number: 3
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB663SRR

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS878EFH at ENCODE; https://www.encodeproject.org/ENCBS878EFH/


title: PRO-cap from uterus (ENCLB673JOR)

description:
https://www.encodeproject.org/experiments/ENCSR015HKC/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR015HKC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB673JOR

source_name: Homo sapiens female adult (53 years) uterus tissue

value: uterus

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS564CNR at ENCODE; https://www.encodeproject.org/ENCBS564CNR/


title: long read scRNA-seq from layer of hippocampus (ENCLB543ISY)

description:
https://www.encodeproject.org/experiments/ENCSR604GLK/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P10 male normal 2k
experiment encode accession: ENCSR604GLK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB543ISY
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (10 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: B6/Cast F1 hippocampus P10 male 1

value: male

value: postnatal

value: 10 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS749DZM at ENCODE; https://www.encodeproject.org/ENCBS749DZM/


title: DNase-seq from K562 (ENCLB178EAM)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 103
technical replicate number: 17
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB178EAM

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS948AHK at ENCODE; https://www.encodeproject.org/ENCBS948AHK/


title: Flow-FISH CRISPR screen from K562 (ENCLB674EMM)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB674EMM
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS464LHY at ENCODE; https://www.encodeproject.org/ENCBS464LHY/


title: DNase-seq from K562 (ENCLB324MLD)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 47
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB324MLD

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB833PVC)

description:
https://www.encodeproject.org/experiments/ENCSR008TSD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR008TSD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB833PVC

source_name: Homo sapiens female adult (42 years) Metastatic Breast Carcinoma in the Brain tissue

value: tissue

value: 42 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS537UKE at ENCODE; https://www.encodeproject.org/ENCBS537UKE/


title: long read scRNA-seq from layer of hippocampus (ENCLB056SKE)

description:
https://www.encodeproject.org/experiments/ENCSR137PNB/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P36 female normal 2k
experiment encode accession: ENCSR137PNB
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB056SKE
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (36 days) layer of hippocampus tissue nuclear fraction

value: layer of hippocampus

value: B6/Cast F1 hippocampus P36 female 2

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS317KAV at ENCODE; https://www.encodeproject.org/ENCBS317KAV/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: PRO-cap from uterus (ENCLB117SFE)

description:
https://www.encodeproject.org/experiments/ENCSR015HKC/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR015HKC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB117SFE

value: uterus

value: female

value: adult

value: 53 year

value: GTEx

value: ENCBS564CNR at ENCODE; https://www.encodeproject.org/ENCBS564CNR/


title: long read scRNA-seq from layer of hippocampus (ENCLB764KGW)

description:
https://www.encodeproject.org/experiments/ENCSR604GLK/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P10 male normal 2k
experiment encode accession: ENCSR604GLK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB764KGW
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: tissue

value: B6/Cast F1 hippocampus P10 male 2

value: male

value: 10 day

value: ENCBS578PCE at ENCODE; https://www.encodeproject.org/ENCBS578PCE/


title: DNase-seq from K562 (ENCLB996JIS)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 102
technical replicate number: 1
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB996JIS

value: cell line

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS630PRO at ENCODE; https://www.encodeproject.org/ENCBS630PRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB835NYZ)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB835NYZ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS733URR at ENCODE; https://www.encodeproject.org/ENCBS733URR/


title: STARR-seq from A549 (ENCLB544ADF)

description:
https://www.encodeproject.org/experiments/ENCSR005XEA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR005XEA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB544ADF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM DMSO for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:28264; treatment_term_name:DMSO; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS991WDO at ENCODE; https://www.encodeproject.org/ENCBS991WDO/


title: DNase-seq from K562 (ENCLB322IRX)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 45
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB322IRX

value: female

value: adult

value: 53 year

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: long read scRNA-seq from layer of hippocampus (ENCLB684NGU)

description:
https://www.encodeproject.org/experiments/ENCSR137PNB/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P36 female normal 2k
experiment encode accession: ENCSR137PNB
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB684NGU
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: layer of hippocampus

value: tissue

value: B6/Cast F1 hippocampus P36 female 1

value: postnatal

value: 36 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS462MCF at ENCODE; https://www.encodeproject.org/ENCBS462MCF/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: long read scRNA-seq from layer of hippocampus (ENCLB527WDW)

description:
https://www.encodeproject.org/experiments/ENCSR068XEK/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P18-20mo male normal 2k
experiment encode accession: ENCSR068XEK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB527WDW
nucleic acid starting quantity: 167
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male adult (18-20 months) layer of hippocampus tissue nuclear fraction

value: B6/Cast F1 hippocampus P18-20mo male 2

value: male

value: 18-20 month

value: ENCBS414FUV at ENCODE; https://www.encodeproject.org/ENCBS414FUV/


title: long read scRNA-seq from layer of hippocampus (ENCLB069ZRO)

description:
https://www.encodeproject.org/experiments/ENCSR068XEK/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 hippocampus P18-20mo male normal 2k
experiment encode accession: ENCSR068XEK
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB069ZRO
nucleic acid starting quantity: 167
nucleic acid starting quantity units: cells

value: B6/Cast F1 hippocampus P18-20mo male 1

value: adult

value: ENCBS448REP at ENCODE; https://www.encodeproject.org/ENCBS448REP/


title: DNase-seq from K562 (ENCLB363YWX)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 50
technical replicate number: 2
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB363YWX

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS983TWO at ENCODE; https://www.encodeproject.org/ENCBS983TWO/


title: STARR-seq from A549 (ENCLB693AOH)

description:
https://www.encodeproject.org/experiments/ENCSR005XEA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR005XEA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB693AOH
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:28264; treatment_term_name:DMSO; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS991WDO at ENCODE; https://www.encodeproject.org/ENCBS991WDO/


title: STARR-seq from A549 (ENCLB094XNG)

description:
https://www.encodeproject.org/experiments/ENCSR005XEA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR005XEA
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB094XNG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: ENCBS091FRV at ENCODE; https://www.encodeproject.org/ENCBS091FRV/


title: DNase-seq from lower lobe of left lung (ENCLB761OOW)

description:
https://www.encodeproject.org/experiments/ENCSR033FSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR033FSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB761OOW

source_name: Homo sapiens male adult (60 years) lower lobe of left lung tissue

value: lower lobe of left lung

value: tissue

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Shin Lin

value: ENCBS342ABJ at ENCODE; https://www.encodeproject.org/ENCBS342ABJ/


title: DNase-seq from HUDEP-2 (ENCLB393CQU)

description:
https://www.encodeproject.org/experiments/ENCSR032WWT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR032WWT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB393CQU

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS941HOK at ENCODE; https://www.encodeproject.org/ENCBS941HOK/


title: Flow-FISH CRISPR screen from K562 (ENCLB062HMU)

description:
https://www.encodeproject.org/experiments/ENCSR034NTW/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR034NTW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB062HMU
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS464LHY at ENCODE; https://www.encodeproject.org/ENCBS464LHY/


title: long read scRNA-seq from adrenal gland (ENCLB597CQE)

description:
https://www.encodeproject.org/experiments/ENCSR062QQH/
***************
biological replicate number: 1
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P10 male normal 2k
experiment encode accession: ENCSR062QQH
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB597CQE
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (10 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: B6/Cast F1 adrenal P10 male 1

value: male

value: postnatal

value: 10 day

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS498DPL at ENCODE; https://www.encodeproject.org/ENCBS498DPL/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from K562 (ENCLB790KKN)

description:
https://www.encodeproject.org/experiments/ENCSR160FPV/
***************
biological replicate number: 56
technical replicate number: 46
description:
experiment encode accession: ENCSR160FPV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB790KKN

source_name: Homo sapiens K562 cell line

value: cell line

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS252MDR at ENCODE; https://www.encodeproject.org/ENCBS252MDR/


title: long read scRNA-seq from adrenal gland (ENCLB843TQU)

description:
https://www.encodeproject.org/experiments/ENCSR062QQH/
***************
biological replicate number: 2
technical replicate number: 1
description: PacBio long-read B6/Cast F1 adrenal P10 male normal 2k
experiment encode accession: ENCSR062QQH
assay title: long read scRNA-seq
assembly: mm10
encode release date: 2023-02-09
lab: Ali Mortazavi, UCI
library encode accession: ENCLB843TQU
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: tissue

value: B6/Cast F1 adrenal P10 male 2

value: ENCBS007OHI at ENCODE; https://www.encodeproject.org/ENCBS007OHI/