title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB206VWH)

description:
https://www.encodeproject.org/experiments/ENCSR909JZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR909JZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB206VWH

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS647LKZ at ENCODE; https://www.encodeproject.org/ENCBS647LKZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB292OIJ)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB292OIJ
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: BJAB

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: dev stage

value: child

tag: age

value: 5 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS891TJI at ENCODE; https://www.encodeproject.org/ENCBS891TJI/


title: Flow-FISH CRISPR screen from BJAB (ENCLB736ISZ)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB736ISZ
size range: 200-210


title: Control CRISPR screen from WTC11 (ENCLB029XFA)

description:
https://www.encodeproject.org/experiments/ENCSR900LDE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR900LDE
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB029XFA

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens MECP2, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: adult

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS994MEQ at ENCODE; https://www.encodeproject.org/ENCBS994MEQ/


title: proliferation CRISPR screen from WTC11 (ENCLB152TUP)

description:
https://www.encodeproject.org/experiments/ENCSR900AXT/
***************
biological replicate number: 1
technical replicate number: 1
description: Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.
experiment encode accession: ENCSR900AXT
assay title: proliferation CRISPR screen
assembly: GRCh38
possible controls: ENCSR427OPP
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB152TUP

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 80 ng/mL tioguanine for 7 days

value: The Gladstone Stem Cell Core

tag: treatments

value: treatment_term_id:CHEBI:9555; treatment_term_name:tioguanine; treatment_type:chemical; duration:7; duration_units:day;

value: ENCBS176KJH at ENCODE; https://www.encodeproject.org/ENCBS176KJH/


title: PRO-cap from ovary (ENCLB548PLH)

description:
https://www.encodeproject.org/experiments/ENCSR889QVM/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR889QVM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB548PLH

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens female adult (53 years) ovary tissue

value: ovary

value: tissue

value: 53 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS367YRP at ENCODE; https://www.encodeproject.org/ENCBS367YRP/


title: Flow-FISH CRISPR screen from BJAB (ENCLB906AFE)

description:
https://www.encodeproject.org/experiments/ENCSR115WOS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR115WOS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB906AFE
size range: 200-210

value: BJAB

value: cell line

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS283WNX at ENCODE; https://www.encodeproject.org/ENCBS283WNX/


title: Flow-FISH CRISPR screen from K562 (ENCLB683PQJ)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB683PQJ
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: health state

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS531ARE at ENCODE; https://www.encodeproject.org/ENCBS531ARE/


title: DNase-seq from GM12878 (ENCLB495LSH)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 27
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB495LSH

source_name: Homo sapiens GM12878 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Coriell

value: ENCBS659UMC at ENCODE; https://www.encodeproject.org/ENCBS659UMC/


title: PRO-cap from right cardiac atrium (ENCLB502ULE)

description:
https://www.encodeproject.org/experiments/ENCSR883PPD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium of heart.
experiment encode accession: ENCSR883PPD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB502ULE

source_name: Homo sapiens female adult (46 years) right cardiac atrium tissue

value: right cardiac atrium

value: tissue

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS899ZGN at ENCODE; https://www.encodeproject.org/ENCBS899ZGN/


title: Flow-FISH CRISPR screen from K562 (ENCLB763MEQ)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB763MEQ
size range: 200-210

value: cell line

value: female

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS974TWM at ENCODE; https://www.encodeproject.org/ENCBS974TWM/


title: Flow-FISH CRISPR screen from K562 (ENCLB520KUX)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB520KUX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: ATCC

value: ENCBS531ARE at ENCODE; https://www.encodeproject.org/ENCBS531ARE/


title: PRO-cap from ovary (ENCLB098AYO)

description:
https://www.encodeproject.org/experiments/ENCSR889QVM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR889QVM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB098AYO

value: ovary

value: ENCBS367YRP at ENCODE; https://www.encodeproject.org/ENCBS367YRP/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB542XQN)

description:
https://www.encodeproject.org/experiments/ENCSR888DKJ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR888DKJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB542XQN

source_name: Homo sapiens female adult (67 years) Metastatic Breast Carcinoma in the Brain tissue

value: tissue

value: 67 year

value: CHTN

value: ENCBS005MKC at ENCODE; https://www.encodeproject.org/ENCBS005MKC/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB396VVI)

description:
https://www.encodeproject.org/experiments/ENCSR888DKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR888DKJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB396VVI

value: Haiyuan Yu, Cornell


title: PRO-cap from bile duct (ENCLB303PTH)

description:
https://www.encodeproject.org/experiments/ENCSR889PCF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bile duct.
experiment encode accession: ENCSR889PCF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB303PTH

source_name: Homo sapiens female adult (41 years) bile duct tissue

value: bile duct

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS886UTZ at ENCODE; https://www.encodeproject.org/ENCBS886UTZ/


title: PRO-cap from uterus (ENCLB142BBW)

description:
https://www.encodeproject.org/experiments/ENCSR883HAT/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR883HAT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB142BBW

source_name: Homo sapiens female adult (42 years) uterus tissue

value: uterus

value: female

value: 42 year

value: ENCBS364FET at ENCODE; https://www.encodeproject.org/ENCBS364FET/


title: PRO-cap from uterus (ENCLB891QEE)

description:
https://www.encodeproject.org/experiments/ENCSR883HAT/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Uterus.
experiment encode accession: ENCSR883HAT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB891QEE

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB961YMB)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB961YMB
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS531ARE at ENCODE; https://www.encodeproject.org/ENCBS531ARE/


title: PRO-cap from anterior vena cava (ENCLB238VTU)

description:
https://www.encodeproject.org/experiments/ENCSR881RXX/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Superior vena cava.
experiment encode accession: ENCSR881RXX
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB238VTU

source_name: Homo sapiens male adult (62 years) anterior vena cava tissue

value: anterior vena cava

value: tissue

value: male

value: 62 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS084ORZ at ENCODE; https://www.encodeproject.org/ENCBS084ORZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB021ZJB)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB021ZJB
size range: 200-210

value: female

value: ENCBS974TWM at ENCODE; https://www.encodeproject.org/ENCBS974TWM/


title: Flow-FISH CRISPR screen from K562 (ENCLB910EQR)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB910EQR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB667CMD)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB667CMD
size range: 200-210


title: PRO-cap from bile duct (ENCLB292KVA)

description:
https://www.encodeproject.org/experiments/ENCSR889PCF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Bile duct.
experiment encode accession: ENCSR889PCF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB292KVA

value: bile duct

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS886UTZ at ENCODE; https://www.encodeproject.org/ENCBS886UTZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB231NZC)

description:
https://www.encodeproject.org/experiments/ENCSR113BJT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR113BJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB231NZC
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford


title: PRO-cap from anterior vena cava (ENCLB201FOW)

description:
https://www.encodeproject.org/experiments/ENCSR881RXX/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Superior vena cava.
experiment encode accession: ENCSR881RXX
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB201FOW

value: anterior vena cava

value: tissue

value: male


title: DNase-seq from HCT116 (ENCLB449CED)

description:
https://www.encodeproject.org/experiments/ENCSR851VTF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR851VTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB449CED

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS169KKQ at ENCODE; https://www.encodeproject.org/ENCBS169KKQ/


title: PRO-cap from right cardiac atrium (ENCLB206BTP)

description:
https://www.encodeproject.org/experiments/ENCSR883PPD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right atrium of heart.
experiment encode accession: ENCSR883PPD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB206BTP

value: right cardiac atrium

value: female

value: DM:no; HTN:no; CAD:no

value: 46 year

value: Haiyuan Yu, Cornell

value: ENCBS899ZGN at ENCODE; https://www.encodeproject.org/ENCBS899ZGN/


title: PRO-cap from Metastatic Liver Carcinoma in the Adrenal Gland (ENCLB563BNJ)

description:
https://www.encodeproject.org/experiments/ENCSR876AEQ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic liver cancer to adrenal gland.
experiment encode accession: ENCSR876AEQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB563BNJ

source_name: Homo sapiens female adult (30 years) Metastatic Liver Carcinoma in the Adrenal Gland tissue

value: adult

value: 30 year

value: CHTN

value: ENCBS240MIF at ENCODE; https://www.encodeproject.org/ENCBS240MIF/


title: DNase-seq from HCT116 (ENCLB730LYG)

description:
https://www.encodeproject.org/experiments/ENCSR851VTF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR851VTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB730LYG

value: cell line

value: ENCBS208UUJ at ENCODE; https://www.encodeproject.org/ENCBS208UUJ/


title: DNase-seq from HCT116 (ENCLB078BPW)

description:
https://www.encodeproject.org/experiments/ENCSR851VTF/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR851VTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB078BPW

value: male

value: colorectal carcinoma

value: ENCBS759SIF at ENCODE; https://www.encodeproject.org/ENCBS759SIF/


title: DNase-seq from naive B cell (ENCLB918GAH)

description:
https://www.encodeproject.org/experiments/ENCSR871ZIX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR871ZIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB918GAH

source_name: Homo sapiens female adult (39 years) naive B primary cell treated with 1 ug/mL anti-CD40 for 72 hours, 10 ug/mL anti-IgM for 72 hours

value: naive B cell

value: primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: StemExpress

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius; treatment_term_name:anti-IgM; treatment_type:antibody; duration:72; duration_units:hour; temperature:37; temperature_units:Celsius;

value: ENCBS675CAB at ENCODE; https://www.encodeproject.org/ENCBS675CAB/


title: PRO-cap from prostate gland (ENCLB254SEB)

description:
https://www.encodeproject.org/experiments/ENCSR845TMF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Prostate gland.
experiment encode accession: ENCSR845TMF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB254SEB

source_name: Homo sapiens male adult (54 years) prostate gland tissue

value: prostate gland

value: tissue

value: 54 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS029PCI at ENCODE; https://www.encodeproject.org/ENCBS029PCI/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB326NZE)

description:
https://www.encodeproject.org/experiments/ENCSR110WYZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR110WYZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB326NZE

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-15 for 1 hour

value: CD4-positive, alpha-beta T cell

value: female

value: adult

value: 34 year

value: AllCells

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS152TOL at ENCODE; https://www.encodeproject.org/ENCBS152TOL/


title: Control CRISPR screen from WTC11 (ENCLB097EIE)

description:
https://www.encodeproject.org/experiments/ENCSR900LDE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR900LDE
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB097EIE

value: cell line

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS792PHI at ENCODE; https://www.encodeproject.org/ENCBS792PHI/


title: Flow-FISH CRISPR screen from K562 (ENCLB499CEY)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB499CEY
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS172FLS at ENCODE; https://www.encodeproject.org/ENCBS172FLS/


title: Flow-FISH CRISPR screen from K562 (ENCLB069LWQ)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB069LWQ
size range: 200-210

value: female

value: ENCBS678QDN at ENCODE; https://www.encodeproject.org/ENCBS678QDN/


title: DNase-seq from HCT116 (ENCLB593SJB)

description:
https://www.encodeproject.org/experiments/ENCSR851VTF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR851VTF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB593SJB

value: colorectal carcinoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS313GVO at ENCODE; https://www.encodeproject.org/ENCBS313GVO/


title: PRO-cap from prostate gland (ENCLB906CRF)

description:
https://www.encodeproject.org/experiments/ENCSR845TMF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Prostate gland.
experiment encode accession: ENCSR845TMF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB906CRF

value: prostate gland

value: tissue

value: male

value: 54 year

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS029PCI at ENCODE; https://www.encodeproject.org/ENCBS029PCI/


title: PRO-cap from right lobe of liver (ENCLB424VPZ)

description:
https://www.encodeproject.org/experiments/ENCSR845LKT/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR845LKT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB424VPZ

source_name: Homo sapiens female child (16 years) right lobe of liver tissue

value: right lobe of liver

value: DM:no; HTN:no; CAD:no

value: child

value: 16 year

value: Michael Snyder

value: ENCBS061QJV at ENCODE; https://www.encodeproject.org/ENCBS061QJV/


title: PRO-cap from monocyte (ENCLB708FJM)

description:
https://www.encodeproject.org/experiments/ENCSR841GXY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Monocytes.
experiment encode accession: ENCSR841GXY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB708FJM

source_name: Homo sapiens monocyte primary cell

value: monocyte

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS526SHG at ENCODE; https://www.encodeproject.org/ENCBS526SHG/


title: PRO-cap from rectum (ENCLB642MZK)

description:
https://www.encodeproject.org/experiments/ENCSR836XBB/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Rectum.
experiment encode accession: ENCSR836XBB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB642MZK

source_name: Homo sapiens rectum tissue

value: rectum

value: tissue

value: Ahmed Mohyeldin

value: ENCBS179BHV at ENCODE; https://www.encodeproject.org/ENCBS179BHV/


title: PRO-cap from right lobe of liver (ENCLB483VRK)

description:
https://www.encodeproject.org/experiments/ENCSR845LKT/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR845LKT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB483VRK

value: female

value: Haiyuan Yu, Cornell


title: Flow-FISH CRISPR screen from K562 (ENCLB358SFJ)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB358SFJ
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS678QDN at ENCODE; https://www.encodeproject.org/ENCBS678QDN/


title: PRO-cap from monocyte (ENCLB910MZW)

description:
https://www.encodeproject.org/experiments/ENCSR841GXY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Monocytes.
experiment encode accession: ENCSR841GXY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB910MZW

value: monocyte

value: primary cell

value: not collected


title: Flow-FISH CRISPR screen from K562 (ENCLB428OMR)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428OMR
size range: 200-210


title: PRO-cap from rectum (ENCLB040UMX)

description:
https://www.encodeproject.org/experiments/ENCSR836XBB/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Rectum.
experiment encode accession: ENCSR836XBB
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB040UMX

value: unknown


title: PRO-cap from peripheral blood mononuclear cell (ENCLB246YZW)

description:
https://www.encodeproject.org/experiments/ENCSR834OVY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR834OVY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB246YZW

source_name: Homo sapiens peripheral blood mononuclear primary cell

value: peripheral blood mononuclear cell

value: Remi J. Creusot

value: ENCBS187URZ at ENCODE; https://www.encodeproject.org/ENCBS187URZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB657YPX)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB657YPX
size range: 200-210

value: ENCBS172FLS at ENCODE; https://www.encodeproject.org/ENCBS172FLS/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB173BLU)

description:
https://www.encodeproject.org/experiments/ENCSR834OVY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR834OVY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB173BLU


title: FACS CRISPR screen from K562 (ENCLB812DBE)

description:
https://www.encodeproject.org/experiments/ENCSR831DXR/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following FACS low
experiment encode accession: ENCSR831DXR
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR048GGL
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB812DBE

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 10 days after the sample was treated with Puromycin

value: female

value: Yin Shen, UCSF

value: ENCBS497SIF at ENCODE; https://www.encodeproject.org/ENCBS497SIF/


title: FACS CRISPR screen from K562 (ENCLB375TRS)

description:
https://www.encodeproject.org/experiments/ENCSR831DXR/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following FACS low
experiment encode accession: ENCSR831DXR
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR048GGL
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB375TRS

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS973SVC at ENCODE; https://www.encodeproject.org/ENCBS973SVC/


title: Flow-FISH CRISPR screen from K562 (ENCLB382XSO)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB382XSO
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford


title: PRO-cap from natural killer cell (ENCLB444ULN)

description:
https://www.encodeproject.org/experiments/ENCSR829KWG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NK cells.
experiment encode accession: ENCSR829KWG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB444ULN

source_name: Homo sapiens natural killer primary cell

value: natural killer cell

value: Haiyuan Yu, Cornell

value: ENCBS568UEB at ENCODE; https://www.encodeproject.org/ENCBS568UEB/


title: PRO-cap from spleen (ENCLB029OOH)

description:
https://www.encodeproject.org/experiments/ENCSR821MIF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR821MIF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB029OOH

source_name: Homo sapiens female adult (59 years) spleen tissue

value: spleen

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Michael Snyder

value: ENCBS475SPP at ENCODE; https://www.encodeproject.org/ENCBS475SPP/


title: PRO-cap from spleen (ENCLB369PPZ)

description:
https://www.encodeproject.org/experiments/ENCSR821MIF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR821MIF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB369PPZ

value: female


title: PRO-cap from natural killer cell (ENCLB387QKF)

description:
https://www.encodeproject.org/experiments/ENCSR829KWG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NK cells.
experiment encode accession: ENCSR829KWG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB387QKF

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB258KQK)

description:
https://www.encodeproject.org/experiments/ENCSR813CRU/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR813CRU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB258KQK

source_name: Homo sapiens female adult (71 years) Metastatic Breast Carcinoma in the Brain tissue

value: adult

value: 71 year

value: CHTN

value: ENCBS446IML at ENCODE; https://www.encodeproject.org/ENCBS446IML/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB466HFS)

description:
https://www.encodeproject.org/experiments/ENCSR813CRU/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR813CRU
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB466HFS

value: Haiyuan Yu, Cornell


title: PRO-cap from heart left ventricle (ENCLB693HFZ)

description:
https://www.encodeproject.org/experiments/ENCSR812JCT/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR812JCT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB693HFZ

source_name: Homo sapiens female adult (46 years) heart left ventricle tissue

value: heart left ventricle

value: DM:no; HTN:no; CAD:no

value: 46 year

value: ENCBS569PVU at ENCODE; https://www.encodeproject.org/ENCBS569PVU/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB720MIW)

description:
https://www.encodeproject.org/experiments/ENCSR108LRW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR108LRW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB720MIW

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS907FQF at ENCODE; https://www.encodeproject.org/ENCBS907FQF/


title: PRO-cap from heart left ventricle (ENCLB208BBX)

description:
https://www.encodeproject.org/experiments/ENCSR812JCT/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Left ventricle of heart.
experiment encode accession: ENCSR812JCT
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB208BBX

value: tissue

value: female

value: Michael Snyder


title: PRO-cap from Metastatic Breast Carcinoma in the Ovary (ENCLB678ZBT)

description:
https://www.encodeproject.org/experiments/ENCSR810UBG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to ovary.
experiment encode accession: ENCSR810UBG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB678ZBT

source_name: Homo sapiens female adult (48 years) Metastatic Breast Carcinoma in the Ovary tissue

value: adult

value: 48 year

value: ENCBS116VNU at ENCODE; https://www.encodeproject.org/ENCBS116VNU/


title: DNase-seq from activated T-cell (ENCLB043GIE)

description:
https://www.encodeproject.org/experiments/ENCSR108TSN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR108TSN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB043GIE

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: activated T-cell

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS251AJP at ENCODE; https://www.encodeproject.org/ENCBS251AJP/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB522QEB)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB522QEB
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jurkat

value: cell line

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS071XFR at ENCODE; https://www.encodeproject.org/ENCBS071XFR/


title: STARR-seq from A549 (ENCLB757CTK)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB757CTK
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM ZK216348 (agonist) for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: male

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:ZK216348; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS452ONW at ENCODE; https://www.encodeproject.org/ENCBS452ONW/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB542SZL)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB542SZL
size range: 200-210

value: ENCBS509KCR at ENCODE; https://www.encodeproject.org/ENCBS509KCR/


title: STARR-seq from A549 (ENCLB982ZFZ)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB982ZFZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: ENCBS544WKC at ENCODE; https://www.encodeproject.org/ENCBS544WKC/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB932FBQ)

description:
https://www.encodeproject.org/experiments/ENCSR808LCB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR808LCB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB932FBQ

source_name: Homo sapiens stimulated activated naive CD4-positive, alpha-beta T primary cell

value: primary cell

value: not collected

value: healthy

value: unknown

value: John Stamatoyannopoulos, UW

value: David Hafler

value: ENCBS188HJZ at ENCODE; https://www.encodeproject.org/ENCBS188HJZ/


title: STARR-seq from A549 (ENCLB076VEY)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB076VEY
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ATCC


title: Flow-FISH CRISPR screen from Jurkat (ENCLB912NWW)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB912NWW
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB763ROD)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB763ROD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS678QDN at ENCODE; https://www.encodeproject.org/ENCBS678QDN/


title: STARR-seq from A549 (ENCLB894JGS)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB894JGS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:ZK216348; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS544WKC at ENCODE; https://www.encodeproject.org/ENCBS544WKC/


title: Flow-FISH CRISPR screen from K562 (ENCLB490UAB)

description:
https://www.encodeproject.org/experiments/ENCSR109YFI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR109YFI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB490UAB
size range: 200-210

value: cell line

value: ENCBS172FLS at ENCODE; https://www.encodeproject.org/ENCBS172FLS/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB047ZZB)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB047ZZB
size range: 200-210

value: Jurkat

value: ATCC

value: ENCBS509KCR at ENCODE; https://www.encodeproject.org/ENCBS509KCR/


title: STARR-seq from A549 (ENCLB692IQT)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB692IQT
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: ENCBS483RTQ at ENCODE; https://www.encodeproject.org/ENCBS483RTQ/


title: STARR-seq from A549 (ENCLB624EJP)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB624EJP
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from Jurkat (ENCLB203RJY)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB203RJY
size range: 200-210

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ENCBS071XFR at ENCODE; https://www.encodeproject.org/ENCBS071XFR/


title: STARR-seq from A549 (ENCLB295CFY)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB295CFY
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: adult

value: ENCBS452ONW at ENCODE; https://www.encodeproject.org/ENCBS452ONW/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB818KZV)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB818KZV
size range: 200-210


title: STARR-seq from A549 (ENCLB861LSD)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB861LSD
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year

value: Tim Reddy, Duke


title: STARR-seq from A549 (ENCLB845SCZ)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB845SCZ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: treatment_term_name:ZK216348; treatment_type:chemical; duration:4; duration_units:hour;


title: STARR-seq from A549 (ENCLB663XAM)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB663XAM
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ENCBS606XIB at ENCODE; https://www.encodeproject.org/ENCBS606XIB/


title: STARR-seq from A549 (ENCLB221VDG)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB221VDG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB455OWV)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB455OWV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: STARR-seq from A549 (ENCLB662ATS)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB662ATS
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg


title: Flow-FISH CRISPR screen from Jurkat (ENCLB975BFA)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB975BFA
size range: 200-210

value: Jurkat


title: Flow-FISH CRISPR screen from Jurkat (ENCLB007OEZ)

description:
https://www.encodeproject.org/experiments/ENCSR107RAC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR107RAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB007OEZ
size range: 200-210

value: ATCC


title: STARR-seq from A549 (ENCLB964XCJ)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB964XCJ
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS544WKC at ENCODE; https://www.encodeproject.org/ENCBS544WKC/


title: STARR-seq from A549 (ENCLB160AGL)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB160AGL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male


title: proliferation CRISPR screen from glutamatergic neuron (ENCLB131VDE)

description:
https://www.encodeproject.org/experiments/ENCSR800VEG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR800VEG
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB131VDE

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (CRISPRi) using CRISPR, genetically modified (insertion) using CRISPR, genetically modified (insertion) using TALEN inserting M. musculus Ne...

value: glutamatergic neuron

value: in vitro differentiated cells

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS385BKQ at ENCODE; https://www.encodeproject.org/ENCBS385BKQ/


title: proliferation CRISPR screen from glutamatergic neuron (ENCLB601NZY)

description:
https://www.encodeproject.org/experiments/ENCSR800VEG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR800VEG
assay title: proliferation CRISPR screen
encode release date: 2023-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB601NZY

value: adult

value: ENCBS085TGL at ENCODE; https://www.encodeproject.org/ENCBS085TGL/


title: STARR-seq from A549 (ENCLB774PNP)

description:
https://www.encodeproject.org/experiments/ENCSR802ODH/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR802ODH
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB774PNP
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: 58 year


title: DNase-seq from HCT116 (ENCLB172BLL)

description:
https://www.encodeproject.org/experiments/ENCSR798CAB/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR798CAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB172BLL

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS432TIN at ENCODE; https://www.encodeproject.org/ENCBS432TIN/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB263PPK)

description:
https://www.encodeproject.org/experiments/ENCSR102GSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR102GSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB263PPK

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: 37 year

value: Shelly Heimfeld

value: ENCBS537QSP at ENCODE; https://www.encodeproject.org/ENCBS537QSP/


title: DNase-seq from pancreas (ENCLB185IDU)

description:
https://www.encodeproject.org/experiments/ENCSR102GJU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR102GJU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB185IDU

source_name: Homo sapiens female adult (59 years) pancreas tissue

value: pancreas

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Shin Lin

value: ENCBS725QLD at ENCODE; https://www.encodeproject.org/ENCBS725QLD/


title: Flow-FISH CRISPR screen from K562 (ENCLB714KKA)

description:
https://www.encodeproject.org/experiments/ENCSR615FAF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR615FAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB714KKA
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS785SOB at ENCODE; https://www.encodeproject.org/ENCBS785SOB/


title: DNase-seq from HCT116 (ENCLB559MZO)

description:
https://www.encodeproject.org/experiments/ENCSR798CAB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR798CAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB559MZO

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS526BPM at ENCODE; https://www.encodeproject.org/ENCBS526BPM/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB333KEQ)

description:
https://www.encodeproject.org/experiments/ENCSR098YWP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR098YWP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB333KEQ

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: 39 year

value: Shelly Heimfeld

value: ENCBS731NUL at ENCODE; https://www.encodeproject.org/ENCBS731NUL/


title: PRO-cap from spleen (ENCLB162ANR)

description:
https://www.encodeproject.org/experiments/ENCSR797AOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR797AOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB162ANR

source_name: Homo sapiens female adult (41 years) spleen tissue

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS151FEK at ENCODE; https://www.encodeproject.org/ENCBS151FEK/


title: PRO-cap from spleen (ENCLB603FGB)

description:
https://www.encodeproject.org/experiments/ENCSR797AOQ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Spleen.
experiment encode accession: ENCSR797AOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB603FGB


title: Flow-FISH CRISPR screen from K562 (ENCLB395WRA)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB395WRA
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS347BQU at ENCODE; https://www.encodeproject.org/ENCBS347BQU/


title: DNase-seq from HCT116 (ENCLB970LSF)

description:
https://www.encodeproject.org/experiments/ENCSR798CAB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR798CAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB970LSF

value: male

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS296BDO at ENCODE; https://www.encodeproject.org/ENCBS296BDO/


title: Flow-FISH CRISPR screen from K562 (ENCLB890DKT)

description:
https://www.encodeproject.org/experiments/ENCSR592PMY/
***************
biological replicate number: 1
technical replicate number: 1
description: MEF2C
experiment encode accession: ENCSR592PMY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR865UTQ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB890DKT

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: female

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS486RIL at ENCODE; https://www.encodeproject.org/ENCBS486RIL/


title: PRO-cap from LUHMES (ENCLB266POK)

description:
https://www.encodeproject.org/experiments/ENCSR796JNK/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mesencephalic neuronal cell line.
experiment encode accession: ENCSR796JNK
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB266POK

source_name: Homo sapiens LUHMES cell line

value: LUHMES

value: cell line

value: fetal

value: 8 week

value: Haiyuan Yu, Cornell

value: ENCBS759ILQ at ENCODE; https://www.encodeproject.org/ENCBS759ILQ/


title: DNase-seq from K562 (ENCLB879AFT)

description:
https://www.encodeproject.org/experiments/ENCSR398UMD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR398UMD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB879AFT

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS269PEH at ENCODE; https://www.encodeproject.org/ENCBS269PEH/


title: PRO-cap from sciatic nerve (ENCLB603BWU)

description:
https://www.encodeproject.org/experiments/ENCSR794VAJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sciatic nerve.
experiment encode accession: ENCSR794VAJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB603BWU

source_name: Homo sapiens female adult (41 years) sciatic nerve tissue

value: sciatic nerve

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS437TRT at ENCODE; https://www.encodeproject.org/ENCBS437TRT/


title: DNase-seq from HCT116 (ENCLB058SJY)

description:
https://www.encodeproject.org/experiments/ENCSR798CAB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR798CAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB058SJY

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS406LMI at ENCODE; https://www.encodeproject.org/ENCBS406LMI/


title: Flow-FISH CRISPR screen from K562 (ENCLB590EIB)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB590EIB
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: Jesse Engreitz, Stanford

value: ENCBS676CSB at ENCODE; https://www.encodeproject.org/ENCBS676CSB/


title: Flow-FISH CRISPR screen from K562 (ENCLB762PHX)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB762PHX
size range: 200-210

value: 53 year

value: ATCC

value: ENCBS347BQU at ENCODE; https://www.encodeproject.org/ENCBS347BQU/


title: Flow-FISH CRISPR screen from K562 (ENCLB407HOL)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB407HOL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB022KBO)

description:
https://www.encodeproject.org/experiments/ENCSR592PMY/
***************
biological replicate number: 2
technical replicate number: 1
description: MEF2C
experiment encode accession: ENCSR592PMY
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR865UTQ
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB022KBO

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS244TZA at ENCODE; https://www.encodeproject.org/ENCBS244TZA/


title: DNase-seq from adrenal gland (ENCLB708EIH)

description:
https://www.encodeproject.org/experiments/ENCSR598YQI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR598YQI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB708EIH

source_name: Homo sapiens female adult (41 years) adrenal gland tissue, preserved by flash-freezing

value: adrenal gland

value: tissue

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS049DTW at ENCODE; https://www.encodeproject.org/ENCBS049DTW/

value: Derived from ENCODE donor ENCDO575WHY; https://www.encodeproject.org/ENCDO575WHY/


title: proliferation CRISPR screen from WTC11 (ENCLB185NPZ)

description:
https://www.encodeproject.org/experiments/ENCSR793DSE/
***************
biological replicate number: 2
technical replicate number: 1
description: Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.
experiment encode accession: ENCSR793DSE
assay title: proliferation CRISPR screen
assembly: GRCh38
possible controls: ENCSR427OPP
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB185NPZ

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 240 ng/mL tioguanine for 7 days

value: cell line

value: male

value: adult

value: 30 year

value: Yin Shen, UCSF

value: The Gladstone Stem Cell Core

value: treatment_term_id:CHEBI:9555; treatment_term_name:tioguanine; treatment_type:chemical; duration:7; duration_units:day;

value: ENCBS110YJD at ENCODE; https://www.encodeproject.org/ENCBS110YJD/


title: Control CRISPR screen from K562 (ENCLB121TRW)

description:
https://www.encodeproject.org/experiments/ENCSR591JER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR591JER
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB121TRW

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: ENCBS255GRX at ENCODE; https://www.encodeproject.org/ENCBS255GRX/


title: Flow-FISH CRISPR screen from K562 (ENCLB990HRY)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB990HRY
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS676CSB at ENCODE; https://www.encodeproject.org/ENCBS676CSB/


title: proliferation CRISPR screen from WTC11 (ENCLB750YQF)

description:
https://www.encodeproject.org/experiments/ENCSR793DSE/
***************
biological replicate number: 1
technical replicate number: 1
description: Cell survival-based CRISPR screen targeting genomic regions near MSH2, MSH6, MLH1, PMS2, PCNA and HPRT1 genes.
experiment encode accession: ENCSR793DSE
assay title: proliferation CRISPR screen
assembly: GRCh38
possible controls: ENCSR427OPP
encode release date: 2020-12-08
lab: Yin Shen, UCSF
library encode accession: ENCLB750YQF

value: ENCBS684KAR at ENCODE; https://www.encodeproject.org/ENCBS684KAR/


title: Control CRISPR screen from K562 (ENCLB346BOH)

description:
https://www.encodeproject.org/experiments/ENCSR591JER/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR591JER
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB346BOH

value: cell line

value: ENCBS592HFK at ENCODE; https://www.encodeproject.org/ENCBS592HFK/


title: PRO-cap from vermiform appendix (ENCLB940RSH)

description:
https://www.encodeproject.org/experiments/ENCSR784FKF/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Appendix.
experiment encode accession: ENCSR784FKF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB940RSH

source_name: Homo sapiens male adult (56 years) vermiform appendix tissue

value: vermiform appendix

value: tissue

value: male

value: adult

value: 56 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS890AUO at ENCODE; https://www.encodeproject.org/ENCBS890AUO/


title: PRO-cap from colonic mucosa (ENCLB817YSB)

description:
https://www.encodeproject.org/experiments/ENCSR784YIV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Colonic mucosa.
experiment encode accession: ENCSR784YIV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB817YSB

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue

value: colonic mucosa

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: Michael Snyder

value: ENCBS015EAO at ENCODE; https://www.encodeproject.org/ENCBS015EAO/


title: Flow-FISH CRISPR screen from K562 (ENCLB024XQK)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB024XQK
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS676CSB at ENCODE; https://www.encodeproject.org/ENCBS676CSB/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB434XCF)

description:
https://www.encodeproject.org/experiments/ENCSR795NHV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR795NHV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB434XCF

source_name: Homo sapiens peripheral blood mononuclear primary cell

value: peripheral blood mononuclear cell

value: primary cell

value: not collected

value: unknown

value: Ahmed Mohyeldin

value: ENCBS207UUU at ENCODE; https://www.encodeproject.org/ENCBS207UUU/


title: Flow-FISH CRISPR screen from K562 (ENCLB531BJY)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB531BJY
size range: 200-210

value: cell line

value: adult


title: DNase-seq from HUDEP-2 (ENCLB738FJQ)

description:
https://www.encodeproject.org/experiments/ENCSR583WHC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR583WHC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB738FJQ

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS624YQN at ENCODE; https://www.encodeproject.org/ENCBS624YQN/


title: PRO-cap from vermiform appendix (ENCLB737SYA)

description:
https://www.encodeproject.org/experiments/ENCSR784FKF/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Appendix.
experiment encode accession: ENCSR784FKF
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB737SYA

value: vermiform appendix

value: tissue

value: 56 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS890AUO at ENCODE; https://www.encodeproject.org/ENCBS890AUO/


title: Flow-FISH CRISPR screen from K562 (ENCLB119PHN)

description:
https://www.encodeproject.org/experiments/ENCSR097UHI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR097UHI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB119PHN
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS347BQU at ENCODE; https://www.encodeproject.org/ENCBS347BQU/


title: PRO-cap from LUHMES (ENCLB987LRJ)

description:
https://www.encodeproject.org/experiments/ENCSR796JNK/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Mesencephalic neuronal cell line.
experiment encode accession: ENCSR796JNK
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB987LRJ

value: LUHMES

value: cell line

value: fetal

value: 8 week

value: ENCBS533EME at ENCODE; https://www.encodeproject.org/ENCBS533EME/


title: PRO-cap from colonic mucosa (ENCLB765VJB)

description:
https://www.encodeproject.org/experiments/ENCSR784YIV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Colonic mucosa.
experiment encode accession: ENCSR784YIV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB765VJB

value: colonic mucosa

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: Michael Snyder

value: ENCBS015EAO at ENCODE; https://www.encodeproject.org/ENCBS015EAO/


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB426WBD)

description:
https://www.encodeproject.org/experiments/ENCSR783PRH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR783PRH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB426WBD

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell

value: CD4-positive, alpha-beta memory T cell

value: primary cell

value: not collected

value: multiple sclerosis

value: unknown

value: John Stamatoyannopoulos, UW

value: David Hafler

value: ENCBS105BUL at ENCODE; https://www.encodeproject.org/ENCBS105BUL/


title: PRO-cap from sciatic nerve (ENCLB928NQX)

description:
https://www.encodeproject.org/experiments/ENCSR794VAJ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Sciatic nerve.
experiment encode accession: ENCSR794VAJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB928NQX

value: sciatic nerve

value: tissue

value: female

value: Haiyuan Yu, Cornell

value: ENCBS437TRT at ENCODE; https://www.encodeproject.org/ENCBS437TRT/


title: Flow-FISH CRISPR screen from K562 (ENCLB496VLH)

description:
https://www.encodeproject.org/experiments/ENCSR592ONV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR592ONV
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB496VLH

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS815UTF at ENCODE; https://www.encodeproject.org/ENCBS815UTF/


title: DNase-seq from upper lobe of right lung (ENCLB185KAL)

description:
https://www.encodeproject.org/experiments/ENCSR097KCC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR097KCC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB185KAL

source_name: Homo sapiens male adult (60 years) upper lobe of right lung tissue

value: upper lobe of right lung

value: male

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: Shin Lin

value: ENCBS257MZZ at ENCODE; https://www.encodeproject.org/ENCBS257MZZ/


title: DNase-seq from HCT116 (ENCLB385CGL)

description:
https://www.encodeproject.org/experiments/ENCSR779EBR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR779EBR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB385CGL

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS331JJS at ENCODE; https://www.encodeproject.org/ENCBS331JJS/


title: DNase-seq from HCT116 (ENCLB106AZJ)

description:
https://www.encodeproject.org/experiments/ENCSR779EBR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR779EBR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB106AZJ

value: cell line

value: adult

value: ENCBS542XYN at ENCODE; https://www.encodeproject.org/ENCBS542XYN/


title: DNase-seq from K562 (ENCLB847QGQ)

description:
https://www.encodeproject.org/experiments/ENCSR581WTK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581WTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB847QGQ

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS663WHC at ENCODE; https://www.encodeproject.org/ENCBS663WHC/


title: DNase-seq from K562 (ENCLB972VHQ)

description:
https://www.encodeproject.org/experiments/ENCSR581WTK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR581WTK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB972VHQ


title: DNase-seq from activated T-cell (ENCLB292TXM)

description:
https://www.encodeproject.org/experiments/ENCSR776JYF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR776JYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB292TXM

source_name: Homo sapiens male adult (32 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: male

value: 32 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS931LHV at ENCODE; https://www.encodeproject.org/ENCBS931LHV/


title: DNase-seq from upper lobe of right lung (ENCLB729ZGT)

description:
https://www.encodeproject.org/experiments/ENCSR097KCC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR097KCC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB729ZGT

value: upper lobe of right lung

value: tissue

value: DM:no; HTN:yes; CAD:no; lungs with severe emphysema

value: 60 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS333YMX at ENCODE; https://www.encodeproject.org/ENCBS333YMX/


title: Flow-FISH CRISPR screen from K562 (ENCLB382FBP)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB382FBP
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS321XPS at ENCODE; https://www.encodeproject.org/ENCBS321XPS/


title: Control CRISPR screen from OCI-AML2 (ENCLB212YDG)

description:
https://www.encodeproject.org/experiments/ENCSR770ENU/
***************
biological replicate number: 3
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR770ENU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB212YDG

source_name: Homo sapiens OCI-AML2 cell line genetically modified (insertion) using transduction

value: male

value: acute myeloid leukemia

value: 65 year

value: Tim Reddy, Duke

value: Anthony Letai

value: ENCBS865EGS at ENCODE; https://www.encodeproject.org/ENCBS865EGS/


title: Flow-FISH CRISPR screen from K562 (ENCLB023NRJ)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB023NRJ
size range: 200-210

value: ATCC


title: Control CRISPR screen from OCI-AML2 (ENCLB637NTI)

description:
https://www.encodeproject.org/experiments/ENCSR770ENU/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR770ENU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB637NTI

value: ENCBS460CKD at ENCODE; https://www.encodeproject.org/ENCBS460CKD/


title: PRO-cap from transverse colon (ENCLB590KFY)

description:
https://www.encodeproject.org/experiments/ENCSR769SLJ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Transverse colon.
experiment encode accession: ENCSR769SLJ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB590KFY

source_name: Homo sapiens female adult (53 years) transverse colon tissue

value: transverse colon

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS854ITC at ENCODE; https://www.encodeproject.org/ENCBS854ITC/


title: Flow-FISH CRISPR screen from K562 (ENCLB566TNQ)

description:
https://www.encodeproject.org/experiments/ENCSR580ZYW/
***************
biological replicate number: 2
technical replicate number: 1
description: MYC
experiment encode accession: ENCSR580ZYW
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB566TNQ

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS449DDD at ENCODE; https://www.encodeproject.org/ENCBS449DDD/


title: Control CRISPR screen from OCI-AML2 (ENCLB390TKS)

description:
https://www.encodeproject.org/experiments/ENCSR770ENU/
***************
biological replicate number: 4
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR770ENU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB390TKS

value: male

value: acute myeloid leukemia

value: 65 year

value: Tim Reddy, Duke

value: ENCBS026SNI at ENCODE; https://www.encodeproject.org/ENCBS026SNI/


title: Flow-FISH CRISPR screen from K562 (ENCLB197DMI)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB197DMI
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS249MMJ at ENCODE; https://www.encodeproject.org/ENCBS249MMJ/


title: DNase-seq from activated T-cell (ENCLB050YOK)

description:
https://www.encodeproject.org/experiments/ENCSR768BZY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR768BZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB050YOK

source_name: Homo sapiens female adult (40 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: 40 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS235YIX at ENCODE; https://www.encodeproject.org/ENCBS235YIX/


title: DNase-seq from CD14-positive monocyte (ENCLB426FRA)

description:
https://www.encodeproject.org/experiments/ENCSR364YDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR364YDG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB426FRA

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: adult

value: 24 year

value: Shelly Heimfeld

value: ENCBS204VRD at ENCODE; https://www.encodeproject.org/ENCBS204VRD/


title: Flow-FISH CRISPR screen from K562 (ENCLB792UGL)

description:
https://www.encodeproject.org/experiments/ENCSR580ZYW/
***************
biological replicate number: 1
technical replicate number: 1
description: MYC
experiment encode accession: ENCSR580ZYW
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR311XHA
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB792UGL

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS161HTN at ENCODE; https://www.encodeproject.org/ENCBS161HTN/


title: Control CRISPR screen from OCI-AML2 (ENCLB855ANU)

description:
https://www.encodeproject.org/experiments/ENCSR770ENU/
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biological replicate number: 1
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR770ENU
assay title: Control CRISPR screen
assembly: GRCh38, hg19
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB855ANU

value: male

value: acute myeloid leukemia

value: 65 year

value: Tim Reddy, Duke

value: Anthony Letai

value: ENCBS680UAA at ENCODE; https://www.encodeproject.org/ENCBS680UAA/


title: Flow-FISH CRISPR screen from K562 (ENCLB768UQH)

description:
https://www.encodeproject.org/experiments/ENCSR346PHE/
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biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR346PHE
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB768UQH

value: 53 year

value: ATCC

value: ENCBS815UTF at ENCODE; https://www.encodeproject.org/ENCBS815UTF/


title: DNase-seq from activated T-cell (ENCLB750IBP)

description:
https://www.encodeproject.org/experiments/ENCSR768BZY/
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biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR768BZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB750IBP

value: activated T-cell

value: primary cell

value: adult

value: 40 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS709YWB at ENCODE; https://www.encodeproject.org/ENCBS709YWB/