title: Flow-FISH CRISPR screen from Jurkat (ENCLB675NNN)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB675NNN
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS928LVZ at ENCODE; https://www.encodeproject.org/ENCBS928LVZ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB669GUH)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB669GUH
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: male

tag: health state

tag: dev stage

tag: age

tag: lab

tag: source

tag: link

value: ENCBS341LZS at ENCODE; https://www.encodeproject.org/ENCBS341LZS/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB965CDA)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB965CDA
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB054CYI)

description:
https://www.encodeproject.org/experiments/ENCSR518ZID/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518ZID
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB054CYI

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS425LXB at ENCODE; https://www.encodeproject.org/ENCBS425LXB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB108EQF)

description:
https://www.encodeproject.org/experiments/ENCSR290TTN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR290TTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB108EQF

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS157JDR at ENCODE; https://www.encodeproject.org/ENCBS157JDR/


title: Flow-FISH CRISPR screen from BJAB (ENCLB767AZZ)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB767AZZ
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS846ZQH at ENCODE; https://www.encodeproject.org/ENCBS846ZQH/


title: Flow-FISH CRISPR screen from BJAB (ENCLB488BJX)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB488BJX
size range: 200-210

value: cell line

value: ATCC


title: Flow-FISH CRISPR screen from BJAB (ENCLB430ZRX)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB430ZRX
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB661KQZ)

description:
https://www.encodeproject.org/experiments/ENCSR290TTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR290TTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB661KQZ

value: primary cell

value: adult

value: ENCBS041UKK at ENCODE; https://www.encodeproject.org/ENCBS041UKK/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB336OEO)

description:
https://www.encodeproject.org/experiments/ENCSR290PZQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR290PZQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB336OEO
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: 14 year

value: ENCBS341LZS at ENCODE; https://www.encodeproject.org/ENCBS341LZS/


title: DNase-seq from activated T-cell (ENCLB648IOU)

description:
https://www.encodeproject.org/experiments/ENCSR518DRJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR518DRJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB648IOU

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours

value: activated T-cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS435UTM at ENCODE; https://www.encodeproject.org/ENCBS435UTM/


title: Flow-FISH CRISPR screen from BJAB (ENCLB398NLH)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB398NLH
size range: 200-210

value: BJAB

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS219BVG at ENCODE; https://www.encodeproject.org/ENCBS219BVG/


title: Flow-FISH CRISPR screen from BJAB (ENCLB403QFZ)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB403QFZ
size range: 200-210

value: cell line

value: ATCC


title: DNase-seq from activated T-cell (ENCLB744KWA)

description:
https://www.encodeproject.org/experiments/ENCSR518DRJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518DRJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB744KWA

value: primary cell

value: male

value: adult

value: ENCBS113GON at ENCODE; https://www.encodeproject.org/ENCBS113GON/


title: Flow-FISH CRISPR screen from BJAB (ENCLB450EIU)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB450EIU
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB709WTN)

description:
https://www.encodeproject.org/experiments/ENCSR287XTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR287XTD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB709WTN

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS547IXZ at ENCODE; https://www.encodeproject.org/ENCBS547IXZ/


title: proliferation CRISPR screen from NCI-H460 (ENCLB569QVT)

description:
https://www.encodeproject.org/experiments/ENCSR515OUJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR515OUJ
assay title: proliferation CRISPR screen
possible controls: ENCSR513PAU
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB569QVT
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens NCI-H460 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: carcinoma; large cell lung cancer

value: unknown

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS933GQA at ENCODE; https://www.encodeproject.org/ENCBS933GQA/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB398EHD)

description:
https://www.encodeproject.org/experiments/ENCSR287XKF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR287XKF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB398EHD

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour

value: female

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS058UJZ at ENCODE; https://www.encodeproject.org/ENCBS058UJZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB964ZMX)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB964ZMX
size range: 200-210

value: BJAB

value: cell line

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS219BVG at ENCODE; https://www.encodeproject.org/ENCBS219BVG/


title: Flow-FISH CRISPR screen from BJAB (ENCLB827OBM)

description:
https://www.encodeproject.org/experiments/ENCSR516ZEM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR516ZEM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB827OBM
size range: 200-210

value: ENCBS846ZQH at ENCODE; https://www.encodeproject.org/ENCBS846ZQH/


title: DNase-seq from HUDEP-2 (ENCLB597CAL)

description:
https://www.encodeproject.org/experiments/ENCSR287CXQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR287CXQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB597CAL

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS671GIB at ENCODE; https://www.encodeproject.org/ENCBS671GIB/


title: Flow-FISH CRISPR screen from K562 (ENCLB046FMN)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB046FMN
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS002JTM at ENCODE; https://www.encodeproject.org/ENCBS002JTM/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB033LYM)

description:
https://www.encodeproject.org/experiments/ENCSR514OPX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR514OPX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB033LYM

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS261FKP at ENCODE; https://www.encodeproject.org/ENCBS261FKP/


title: DNase-seq from activated T-cell (ENCLB760IIK)

description:
https://www.encodeproject.org/experiments/ENCSR284RSH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR284RSH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB760IIK

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: activated T-cell

value: 33 year

value: ENCBS711ZHT at ENCODE; https://www.encodeproject.org/ENCBS711ZHT/


title: DNase-seq from immature natural killer cell (ENCLB761QYP)

description:
https://www.encodeproject.org/experiments/ENCSR283JAS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR283JAS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB761QYP

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: male

value: adult

value: 30 year

value: Shelly Heimfeld

value: ENCBS240JGF at ENCODE; https://www.encodeproject.org/ENCBS240JGF/


title: Flow-FISH CRISPR screen from K562 (ENCLB041PBA)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB041PBA
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS734CCQ at ENCODE; https://www.encodeproject.org/ENCBS734CCQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB236XFQ)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB236XFQ
size range: 200-210

value: ENCBS002JTM at ENCODE; https://www.encodeproject.org/ENCBS002JTM/


title: Control CRISPR screen from NCI-H460 (ENCLB018FLG)

description:
https://www.encodeproject.org/experiments/ENCSR513PAU/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR513PAU
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB018FLG
size range: 710-720

source_name: Homo sapiens NCI-H460 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: carcinoma; large cell lung cancer

value: unknown

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS924RCU at ENCODE; https://www.encodeproject.org/ENCBS924RCU/


title: Control CRISPR screen from NCI-H460 (ENCLB446JTZ)

description:
https://www.encodeproject.org/experiments/ENCSR513PAU/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR513PAU
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB446JTZ
size range: 710-720

value: male

value: ENCBS000WES at ENCODE; https://www.encodeproject.org/ENCBS000WES/


title: Flow-FISH CRISPR screen from K562 (ENCLB225IYW)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB225IYW
size range: 200-210

value: adult


title: proliferation CRISPR screen from NCI-H460 (ENCLB444KQB)

description:
https://www.encodeproject.org/experiments/ENCSR515OUJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR515OUJ
assay title: proliferation CRISPR screen
possible controls: ENCSR513PAU
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB444KQB
size range: 710-720

value: ENCBS175XJF at ENCODE; https://www.encodeproject.org/ENCBS175XJF/


title: Flow-FISH CRISPR screen from K562 (ENCLB259XGL)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB259XGL
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB200TCF)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB200TCF
size range: 200-210

value: female


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB618VHY)

description:
https://www.encodeproject.org/experiments/ENCSR511ZQB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR511ZQB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB618VHY

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-4 for 1 hour

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS687QEM at ENCODE; https://www.encodeproject.org/ENCBS687QEM/


title: Flow-FISH CRISPR screen from K562 (ENCLB443QRY)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB443QRY
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS766THI at ENCODE; https://www.encodeproject.org/ENCBS766THI/


title: proliferation CRISPR screen from PC-3 (ENCLB611IWL)

description:
https://www.encodeproject.org/experiments/ENCSR282ELB/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR282ELB
assay title: proliferation CRISPR screen
possible controls: ENCSR325SWE
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB611IWL
size range: 710-720

source_name: Homo sapiens PC-3 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: grade IV, adenocarcinoma

value: 62 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS741ECU at ENCODE; https://www.encodeproject.org/ENCBS741ECU/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB608UZS)

description:
https://www.encodeproject.org/experiments/ENCSR513LOX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR513LOX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB608UZS

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: adult

value: 37 year

value: Shelly Heimfeld

value: ENCBS802COS at ENCODE; https://www.encodeproject.org/ENCBS802COS/


title: Flow-FISH CRISPR screen from K562 (ENCLB978XOW)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB978XOW
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year


title: proliferation CRISPR screen from PC-3 (ENCLB310AJJ)

description:
https://www.encodeproject.org/experiments/ENCSR282ELB/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR282ELB
assay title: proliferation CRISPR screen
possible controls: ENCSR325SWE
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB310AJJ
size range: 710-720

value: ATCC

value: ENCBS380FEO at ENCODE; https://www.encodeproject.org/ENCBS380FEO/


title: Flow-FISH CRISPR screen from K562 (ENCLB975BAM)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB975BAM
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS391ZBW at ENCODE; https://www.encodeproject.org/ENCBS391ZBW/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB232GLX)

description:
https://www.encodeproject.org/experiments/ENCSR282DYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR282DYY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB232GLX

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: ENCBS099WCU at ENCODE; https://www.encodeproject.org/ENCBS099WCU/


title: Flow-FISH CRISPR screen from K562 (ENCLB107VCP)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB107VCP
size range: 200-210

value: ENCBS734CCQ at ENCODE; https://www.encodeproject.org/ENCBS734CCQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB842GEJ)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB842GEJ
size range: 200-210

value: ENCBS684NUP at ENCODE; https://www.encodeproject.org/ENCBS684NUP/


title: Flow-FISH CRISPR screen from K562 (ENCLB244MDQ)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB244MDQ
size range: 200-210

value: female

value: ENCBS061VRC at ENCODE; https://www.encodeproject.org/ENCBS061VRC/


title: Flow-FISH CRISPR screen from K562 (ENCLB128XXT)

description:
https://www.encodeproject.org/experiments/ENCSR513WSO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR513WSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB128XXT
size range: 200-210

value: adult

value: ENCBS002JTM at ENCODE; https://www.encodeproject.org/ENCBS002JTM/


title: Flow-FISH CRISPR screen from K562 (ENCLB602HDD)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB602HDD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB986NRC)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB986NRC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB519PNV)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB519PNV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB121HTZ)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB121HTZ
size range: 200-210

value: ENCBS766THI at ENCODE; https://www.encodeproject.org/ENCBS766THI/


title: Flow-FISH CRISPR screen from K562 (ENCLB420JES)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB420JES
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB249CJG)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB249CJG
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: DNase-seq from T-helper 9 cell (ENCLB121RRN)

description:
https://www.encodeproject.org/experiments/ENCSR278WQA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR278WQA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB121RRN

source_name: Homo sapiens female adult (25 years) T-helper 9 primary cell

value: T-helper 9 cell

value: primary cell

value: 25 year

value: AllCells

value: ENCBS517IMC at ENCODE; https://www.encodeproject.org/ENCBS517IMC/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB954CYA)

description:
https://www.encodeproject.org/experiments/ENCSR279NGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR279NGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB954CYA

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS611KNW at ENCODE; https://www.encodeproject.org/ENCBS611KNW/


title: DNase-seq from activated T-cell (ENCLB431PDR)

description:
https://www.encodeproject.org/experiments/ENCSR279VCL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR279VCL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB431PDR

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: activated T-cell

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS513YWN at ENCODE; https://www.encodeproject.org/ENCBS513YWN/


title: Flow-FISH CRISPR screen from K562 (ENCLB295VZS)

description:
https://www.encodeproject.org/experiments/ENCSR510SCL/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR510SCL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB295VZS
size range: 200-210

value: female

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS391ZBW at ENCODE; https://www.encodeproject.org/ENCBS391ZBW/


title: DNase-seq from T-helper 9 cell (ENCLB452BLX)

description:
https://www.encodeproject.org/experiments/ENCSR278WQA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR278WQA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB452BLX

value: T-helper 9 cell

value: primary cell

value: ENCBS640MNX at ENCODE; https://www.encodeproject.org/ENCBS640MNX/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB763EJQ)

description:
https://www.encodeproject.org/experiments/ENCSR510LEO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR510LEO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB763EJQ

source_name: Homo sapiens female adult (33 years) activated effector memory CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS805QYK at ENCODE; https://www.encodeproject.org/ENCBS805QYK/


title: Flow-FISH CRISPR screen from K562 (ENCLB189ELQ)

description:
https://www.encodeproject.org/experiments/ENCSR509XUH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR509XUH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB189ELQ
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS998CUR at ENCODE; https://www.encodeproject.org/ENCBS998CUR/


title: Flow-FISH CRISPR screen from K562 (ENCLB727QAQ)

description:
https://www.encodeproject.org/experiments/ENCSR509XUH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR509XUH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB727QAQ
size range: 200-210


title: DNase-seq from HUDEP-2 (ENCLB957FXC)

description:
https://www.encodeproject.org/experiments/ENCSR278FGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR278FGQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB957FXC

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS742JRE at ENCODE; https://www.encodeproject.org/ENCBS742JRE/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB454UJH)

description:
https://www.encodeproject.org/experiments/ENCSR279NGE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR279NGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB454UJH

value: female

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS716SWF at ENCODE; https://www.encodeproject.org/ENCBS716SWF/


title: Flow-FISH CRISPR screen from K562 (ENCLB046NWM)

description:
https://www.encodeproject.org/experiments/ENCSR509XUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR509XUH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB046NWM
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB085MUL)

description:
https://www.encodeproject.org/experiments/ENCSR509XUH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR509XUH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB085MUL
size range: 200-210


title: DNase-seq from suppressor macrophage (ENCLB036OJI)

description:
https://www.encodeproject.org/experiments/ENCSR508WDL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR508WDL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB036OJI

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS976CZA at ENCODE; https://www.encodeproject.org/ENCBS976CZA/


title: Flow-FISH CRISPR screen from K562 (ENCLB459YJJ)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB459YJJ
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS678RLM at ENCODE; https://www.encodeproject.org/ENCBS678RLM/


title: Flow-FISH CRISPR screen from K562 (ENCLB999OXC)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB999OXC
size range: 200-210

value: female

value: ENCBS031URN at ENCODE; https://www.encodeproject.org/ENCBS031URN/


title: Flow-FISH CRISPR screen from K562 (ENCLB947DBY)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB947DBY
size range: 200-210

value: adult


title: DNase-seq from suppressor macrophage (ENCLB396DHU)

description:
https://www.encodeproject.org/experiments/ENCSR508WDL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR508WDL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB396DHU

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS353WNJ at ENCODE; https://www.encodeproject.org/ENCBS353WNJ/


title: DNase-seq from T-helper 2 cell (ENCLB496YDV)

description:
https://www.encodeproject.org/experiments/ENCSR510QAB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR510QAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB496YDV

source_name: Homo sapiens female adult (25 years) T-helper 2 primary cell

value: T-helper 2 cell

value: 25 year

value: AllCells

value: ENCBS994UKN at ENCODE; https://www.encodeproject.org/ENCBS994UKN/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB228GRH)

description:
https://www.encodeproject.org/experiments/ENCSR508PBU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR508PBU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB228GRH

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: primary cell

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS793MZG at ENCODE; https://www.encodeproject.org/ENCBS793MZG/


title: Flow-FISH CRISPR screen from K562 (ENCLB871RBS)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB871RBS
size range: 200-210

value: cell line

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB914LTD)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB914LTD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS333MBD at ENCODE; https://www.encodeproject.org/ENCBS333MBD/


title: Flow-FISH CRISPR screen from K562 (ENCLB122ZTH)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB122ZTH
size range: 200-210

value: adult

value: ENCBS484RWJ at ENCODE; https://www.encodeproject.org/ENCBS484RWJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB509QAJ)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB509QAJ
size range: 200-210

value: ENCBS031URN at ENCODE; https://www.encodeproject.org/ENCBS031URN/


title: Flow-FISH CRISPR screen from K562 (ENCLB593QYI)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB593QYI
size range: 200-210

value: ENCBS678RLM at ENCODE; https://www.encodeproject.org/ENCBS678RLM/


title: Flow-FISH CRISPR screen from K562 (ENCLB193PNQ)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB193PNQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB775LCK)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB775LCK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB472JMQ)

description:
https://www.encodeproject.org/experiments/ENCSR507XPD/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR507XPD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB472JMQ
size range: 200-210


title: DNase-seq from T-helper 2 cell (ENCLB473JDF)

description:
https://www.encodeproject.org/experiments/ENCSR510QAB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR510QAB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB473JDF

value: T-helper 2 cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS128SJA at ENCODE; https://www.encodeproject.org/ENCBS128SJA/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB199TJY)

description:
https://www.encodeproject.org/experiments/ENCSR510LEO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR510LEO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB199TJY

value: primary cell

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:16; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS260RBV at ENCODE; https://www.encodeproject.org/ENCBS260RBV/


title: Flow-FISH CRISPR screen from K562 (ENCLB980AWX)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB980AWX
size range: 200-210

value: cell line

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB118WOT)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB118WOT
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB009YLW)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB009YLW
size range: 200-210

value: ENCBS333MBD at ENCODE; https://www.encodeproject.org/ENCBS333MBD/


title: Flow-FISH CRISPR screen from K562 (ENCLB659BQD)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB659BQD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB421OYX)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB421OYX
size range: 200-210

value: ENCBS044HDK at ENCODE; https://www.encodeproject.org/ENCBS044HDK/


title: Flow-FISH CRISPR screen from K562 (ENCLB701AQN)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB701AQN
size range: 200-210

value: ENCBS354XGE at ENCODE; https://www.encodeproject.org/ENCBS354XGE/


title: Flow-FISH CRISPR screen from K562 (ENCLB073TZF)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB073TZF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB478DMN)

description:
https://www.encodeproject.org/experiments/ENCSR506YOF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR506YOF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB478DMN
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB975UXQ)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB975UXQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB274AIZ)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB274AIZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB800GCE)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB800GCE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB844LXJ)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB844LXJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB091BTG)

description:
https://www.encodeproject.org/experiments/ENCSR506FTU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR506FTU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091BTG
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB394CBV)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB394CBV
size range: 200-210

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: unknown

value: ENCBS896YMC at ENCODE; https://www.encodeproject.org/ENCBS896YMC/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB843OYF)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB843OYF
size range: 200-210


title: DNase-seq from naive B cell (ENCLB914BCL)

description:
https://www.encodeproject.org/experiments/ENCSR505SCQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR505SCQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914BCL

source_name: Homo sapiens with multiple sclerosis; naive B primary cell, preserved by cryopreservation

value: naive B cell

tag: note

value: B naive CD3- CD14- CD19+ CD27- IgD+

value: not collected

value: multiple sclerosis

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS513AMF at ENCODE; https://www.encodeproject.org/ENCBS513AMF/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB812TAN)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB812TAN
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ENCBS301LMV at ENCODE; https://www.encodeproject.org/ENCBS301LMV/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB111MPJ)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB111MPJ
size range: 200-210

value: female

value: ATCC


title: Flow-FISH CRISPR screen from GM12878 (ENCLB299KLA)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB299KLA
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from GM12878 (ENCLB932EMC)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB932EMC
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB091DAI)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091DAI
size range: 200-210


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB357FMF)

description:
https://www.encodeproject.org/experiments/ENCSR276MBW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR276MBW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB357FMF

source_name: Homo sapiens male adult (38 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS927FGQ at ENCODE; https://www.encodeproject.org/ENCBS927FGQ/


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB117BIA)

description:
https://www.encodeproject.org/experiments/ENCSR505APK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR505APK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB117BIA

source_name: Homo sapiens male adult (30 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: 30 year

value: ENCBS904BFX at ENCODE; https://www.encodeproject.org/ENCBS904BFX/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB423BYJ)

description:
https://www.encodeproject.org/experiments/ENCSR505BCW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR505BCW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB423BYJ
size range: 200-210

value: unknown


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB247VXI)

description:
https://www.encodeproject.org/experiments/ENCSR505APK/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR505APK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB247VXI

value: ENCBS575CEP at ENCODE; https://www.encodeproject.org/ENCBS575CEP/


title: Flow-FISH CRISPR screen from K562 (ENCLB120NSA)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB120NSA
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS111YIG at ENCODE; https://www.encodeproject.org/ENCBS111YIG/


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB476NON)

description:
https://www.encodeproject.org/experiments/ENCSR505APK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR505APK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476NON

value: ENCBS794EVG at ENCODE; https://www.encodeproject.org/ENCBS794EVG/


title: Flow-FISH CRISPR screen from K562 (ENCLB834EKK)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB834EKK
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: ENCBS869DDU at ENCODE; https://www.encodeproject.org/ENCBS869DDU/


title: Flow-FISH CRISPR screen from K562 (ENCLB770GHG)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB770GHG
size range: 200-210

value: adult

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB349HGZ)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB349HGZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB499AUR)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB499AUR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB869OUF)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB869OUF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB624OEB)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB624OEB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB391KHC)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB391KHC
size range: 200-210

value: ENCBS583FCS at ENCODE; https://www.encodeproject.org/ENCBS583FCS/


title: Flow-FISH CRISPR screen from K562 (ENCLB284CUO)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB284CUO
size range: 200-210


title: DNase-seq from CD14-positive monocyte (ENCLB459VSP)

description:
https://www.encodeproject.org/experiments/ENCSR500ZQD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR500ZQD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459VSP

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS176ITE at ENCODE; https://www.encodeproject.org/ENCBS176ITE/


title: Flow-FISH CRISPR screen from K562 (ENCLB663WPC)

description:
https://www.encodeproject.org/experiments/ENCSR502XKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR502XKS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB663WPC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: DNase-seq from CD14-positive monocyte (ENCLB028KJH)

description:
https://www.encodeproject.org/experiments/ENCSR500ZQD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR500ZQD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB028KJH

value: ENCBS773RFK at ENCODE; https://www.encodeproject.org/ENCBS773RFK/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB237QFJ)

description:
https://www.encodeproject.org/experiments/ENCSR501QAE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR501QAE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB237QFJ

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS176LLY at ENCODE; https://www.encodeproject.org/ENCBS176LLY/


title: Flow-FISH CRISPR screen from K562 (ENCLB499TDG)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB499TDG
size range: 200-210

value: cell line

value: female

value: adult

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB930NEW)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB930NEW
size range: 200-210

value: ATCC

value: ENCBS373FKP at ENCODE; https://www.encodeproject.org/ENCBS373FKP/


title: Flow-FISH CRISPR screen from K562 (ENCLB883FTM)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB883FTM
size range: 200-210

value: ENCBS583FCS at ENCODE; https://www.encodeproject.org/ENCBS583FCS/


title: Flow-FISH CRISPR screen from K562 (ENCLB681DGS)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB681DGS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB407BVQ)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB407BVQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB372AZH)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB372AZH
size range: 200-210

value: ENCBS265ELY at ENCODE; https://www.encodeproject.org/ENCBS265ELY/


title: proliferation CRISPR screen from K562 (ENCLB091TRI)

description:
https://www.encodeproject.org/experiments/ENCSR501RAG/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR501RAG
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB091TRI

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRa (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS205QIH at ENCODE; https://www.encodeproject.org/ENCBS205QIH/


title: Flow-FISH CRISPR screen from K562 (ENCLB912OVA)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB912OVA
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS770DBX at ENCODE; https://www.encodeproject.org/ENCBS770DBX/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB747JRP)

description:
https://www.encodeproject.org/experiments/ENCSR274HUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274HUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB747JRP

source_name: Homo sapiens female adult (33 years) activated effector memory CD4-positive, alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS226YBU at ENCODE; https://www.encodeproject.org/ENCBS226YBU/


title: DNase-seq from K562 (ENCLB121AET)

description:
https://www.encodeproject.org/experiments/ENCSR500NAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR500NAJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB121AET
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: adult

value: ATCC

value: ENCBS498DKC at ENCODE; https://www.encodeproject.org/ENCBS498DKC/


title: Flow-FISH CRISPR screen from K562 (ENCLB630YVO)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB630YVO
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS265ELY at ENCODE; https://www.encodeproject.org/ENCBS265ELY/


title: DNase-seq from activated effector memory CD4-positive, alpha-beta T cell (ENCLB425ZQP)

description:
https://www.encodeproject.org/experiments/ENCSR274HUK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR274HUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB425ZQP

value: ENCBS556FRO at ENCODE; https://www.encodeproject.org/ENCBS556FRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB359SPT)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB359SPT
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB863JFV)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB863JFV
size range: 200-210

value: 53 year


title: proliferation CRISPR screen from K562 (ENCLB611LRF)

description:
https://www.encodeproject.org/experiments/ENCSR501RAG/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR501RAG
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB611LRF

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS841MWN at ENCODE; https://www.encodeproject.org/ENCBS841MWN/


title: Flow-FISH CRISPR screen from K562 (ENCLB880AMK)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB880AMK
size range: 200-210

value: ENCBS887LYX at ENCODE; https://www.encodeproject.org/ENCBS887LYX/


title: Flow-FISH CRISPR screen from K562 (ENCLB266GHF)

description:
https://www.encodeproject.org/experiments/ENCSR274JMZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR274JMZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB266GHF
size range: 200-210

value: ENCBS373FKP at ENCODE; https://www.encodeproject.org/ENCBS373FKP/


title: Flow-FISH CRISPR screen from K562 (ENCLB875KMZ)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB875KMZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB403JMB)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB403JMB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB302LNT)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB302LNT
size range: 200-210

value: ENCBS263SJG at ENCODE; https://www.encodeproject.org/ENCBS263SJG/


title: Flow-FISH CRISPR screen from K562 (ENCLB552IZJ)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB552IZJ
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB954WZR)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB954WZR
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB077UCA)

description:
https://www.encodeproject.org/experiments/ENCSR269OIJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR269OIJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB077UCA
size range: 200-210

value: adult

value: ENCBS847UFN at ENCODE; https://www.encodeproject.org/ENCBS847UFN/


title: Flow-FISH CRISPR screen from K562 (ENCLB633CWQ)

description:
https://www.encodeproject.org/experiments/ENCSR269OIJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR269OIJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB633CWQ
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB582EZF)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB582EZF
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS770DBX at ENCODE; https://www.encodeproject.org/ENCBS770DBX/


title: Flow-FISH CRISPR screen from K562 (ENCLB712XLW)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB712XLW
size range: 200-210


title: DNase-seq from T follicular helper cell (ENCLB476IPB)

description:
https://www.encodeproject.org/experiments/ENCSR271HYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR271HYO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476IPB

source_name: Homo sapiens female adult (25 years) T follicular helper primary cell

value: T follicular helper cell

value: primary cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS207URP at ENCODE; https://www.encodeproject.org/ENCBS207URP/


title: Flow-FISH CRISPR screen from K562 (ENCLB051GOC)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB051GOC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB137CUL)

description:
https://www.encodeproject.org/experiments/ENCSR269OIJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR269OIJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB137CUL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB324HMX)

description:
https://www.encodeproject.org/experiments/ENCSR269OIJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR269OIJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB324HMX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB937ERU)

description:
https://www.encodeproject.org/experiments/ENCSR274EPF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR274EPF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB937ERU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB004KHR)

description:
https://www.encodeproject.org/experiments/ENCSR273AQT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR273AQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB004KHR
size range: 200-210

value: ENCBS887LYX at ENCODE; https://www.encodeproject.org/ENCBS887LYX/


title: Flow-FISH CRISPR screen from K562 (ENCLB835CFV)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB835CFV
size range: 200-210

value: ENCBS518WZK at ENCODE; https://www.encodeproject.org/ENCBS518WZK/


title: DNase-seq from esophagus squamous epithelium (ENCLB823HEQ)

description:
https://www.encodeproject.org/experiments/ENCSR499JWR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR499JWR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB823HEQ

source_name: Homo sapiens female adult (47 years) esophagus squamous epithelium tissue

value: esophagus squamous epithelium

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: Shin Lin

value: ENCBS947MUV at ENCODE; https://www.encodeproject.org/ENCBS947MUV/


title: Flow-FISH CRISPR screen from K562 (ENCLB528NMH)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB528NMH
size range: 200-210

value: cell line

value: female

value: adult

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB711UKX)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB711UKX
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB113BFV)

description:
https://www.encodeproject.org/experiments/ENCSR500LKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR500LKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB113BFV

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS822ZKE at ENCODE; https://www.encodeproject.org/ENCBS822ZKE/


title: Flow-FISH CRISPR screen from K562 (ENCLB858WDA)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB858WDA
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS022YBX at ENCODE; https://www.encodeproject.org/ENCBS022YBX/


title: Flow-FISH CRISPR screen from K562 (ENCLB041NVZ)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB041NVZ
size range: 200-210

value: ENCBS263SZD at ENCODE; https://www.encodeproject.org/ENCBS263SZD/


title: Flow-FISH CRISPR screen from K562 (ENCLB865EBF)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB865EBF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB536YCW)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB536YCW
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB581UTV)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB581UTV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB313KAZ)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB313KAZ
size range: 200-210

value: ENCBS168RFE at ENCODE; https://www.encodeproject.org/ENCBS168RFE/


title: Flow-FISH CRISPR screen from K562 (ENCLB341AQA)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB341AQA
size range: 200-210

value: cell line

value: ENCBS518WZK at ENCODE; https://www.encodeproject.org/ENCBS518WZK/


title: Flow-FISH CRISPR screen from K562 (ENCLB192ICS)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB192ICS
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB859EKV)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB859EKV
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB389HNV)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB389HNV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB258SMO)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB258SMO
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB369WDK)

description:
https://www.encodeproject.org/experiments/ENCSR498DPH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR498DPH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB369WDK
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB417CQB)

description:
https://www.encodeproject.org/experiments/ENCSR496NUW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR496NUW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB417CQB

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS243JEO at ENCODE; https://www.encodeproject.org/ENCBS243JEO/


title: DNase-seq from bone marrow (ENCLB524RRZ)

description:
https://www.encodeproject.org/experiments/ENCSR494NUO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR494NUO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB524RRZ

source_name: Homo sapiens bone marrow tissue

value: bone marrow

value: tissue

value: not collected

value: unknown

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS907RUD at ENCODE; https://www.encodeproject.org/ENCBS907RUD/


title: DNase-seq from bone marrow (ENCLB726EBU)

description:
https://www.encodeproject.org/experiments/ENCSR494NUO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR494NUO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB726EBU


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB592NRJ)

description:
https://www.encodeproject.org/experiments/ENCSR266IUC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR266IUC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB592NRJ

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: AllCells

value: ENCBS376BHL at ENCODE; https://www.encodeproject.org/ENCBS376BHL/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB658EXV)

description:
https://www.encodeproject.org/experiments/ENCSR266IUC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR266IUC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB658EXV

value: adult

value: ENCBS068CJD at ENCODE; https://www.encodeproject.org/ENCBS068CJD/


title: DNase-seq from HUDEP-2 (ENCLB870BSO)

description:
https://www.encodeproject.org/experiments/ENCSR492ATF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR492ATF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB870BSO

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: Riken BioResource Cell Bank

value: ENCBS564DNV at ENCODE; https://www.encodeproject.org/ENCBS564DNV/