title: DNase-seq from suppressor macrophage (ENCLB434ZQY)

description:
https://www.encodeproject.org/experiments/ENCSR983UJS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR983UJS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB434ZQY

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: male

value: 24 year

value: ENCBS763VYZ at ENCODE; https://www.encodeproject.org/ENCBS763VYZ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB065FGW)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR983DPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR983DPK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB065FGW

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: dev stage

value: adult

tag: age

value: 33 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: AllCells

tag: link

value: ENCBS919CVE at ENCODE; https://www.encodeproject.org/ENCBS919CVE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB522TZJ)

description:
https://www.encodeproject.org/experiments/ENCSR982BNM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982BNM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB522TZJ

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: 42 year

value: ENCBS622PLS at ENCODE; https://www.encodeproject.org/ENCBS622PLS/


title: Flow-FISH CRISPR screen from K562 (ENCLB101KYE)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB101KYE
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS623YBV at ENCODE; https://www.encodeproject.org/ENCBS623YBV/


title: Flow-FISH CRISPR screen from K562 (ENCLB329FGL)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB329FGL
size range: 200-210

value: ENCBS932NTA at ENCODE; https://www.encodeproject.org/ENCBS932NTA/


title: Flow-FISH CRISPR screen from K562 (ENCLB929GTT)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB929GTT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB800VRV)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB800VRV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB370IQF)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB370IQF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB362FKU)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB362FKU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB292YAN)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB292YAN
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB896WVQ)

description:
https://www.encodeproject.org/experiments/ENCSR978KAK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR978KAK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB896WVQ

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: primary cell

value: male

value: 38 year

value: ENCBS930NWO at ENCODE; https://www.encodeproject.org/ENCBS930NWO/


title: STARR-seq from SH-SY5Y (ENCLB521NBT)

description:
https://www.encodeproject.org/experiments/ENCSR983SZZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR983SZZ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR316NSE
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB521NBT
fragmentation methods: shearing (generic)
size range: 200-600

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens SH-SY5Y cell line genetically modified (episome) using transient transfection

value: female

value: Metastatic neuroblastoma from bone marrow

value: child

value: 4 year

tag: passage number

value: Kevin White, UChicago

value: ENCBS255THM at ENCODE; https://www.encodeproject.org/ENCBS255THM/


title: Flow-FISH CRISPR screen from K562 (ENCLB001SON)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB001SON
size range: 200-210

value: cell line

value: adult

value: ENCBS572NSH at ENCODE; https://www.encodeproject.org/ENCBS572NSH/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB407MHC)

description:
https://www.encodeproject.org/experiments/ENCSR978KAK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR978KAK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB407MHC

value: CD4-positive, alpha-beta T cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS638IGY at ENCODE; https://www.encodeproject.org/ENCBS638IGY/


title: DNase-seq from T-cell (ENCLB858JBT)

description:
https://www.encodeproject.org/experiments/ENCSR977NYS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR977NYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB858JBT

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: ENCBS564LGQ at ENCODE; https://www.encodeproject.org/ENCBS564LGQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB345VXD)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB345VXD
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB056KMI)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB056KMI
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB846KQZ)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB846KQZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB838LGE)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB838LGE
size range: 200-210

value: ENCBS392TQT at ENCODE; https://www.encodeproject.org/ENCBS392TQT/


title: Flow-FISH CRISPR screen from K562 (ENCLB221PVI)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB221PVI
size range: 200-210


title: DNase-seq from T-cell (ENCLB483MSZ)

description:
https://www.encodeproject.org/experiments/ENCSR977NYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR977NYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB483MSZ

value: male

value: 38 year

value: ENCBS677JYV at ENCODE; https://www.encodeproject.org/ENCBS677JYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB472ZVH)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB472ZVH
size range: 200-210

value: cell line

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB480KLG)

description:
https://www.encodeproject.org/experiments/ENCSR980RCS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR980RCS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB480KLG
size range: 200-210

value: ENCBS623YBV at ENCODE; https://www.encodeproject.org/ENCBS623YBV/


title: Flow-FISH CRISPR screen from K562 (ENCLB036PWP)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB036PWP
size range: 200-210

value: ENCBS815NBH at ENCODE; https://www.encodeproject.org/ENCBS815NBH/


title: Flow-FISH CRISPR screen from K562 (ENCLB509XZI)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB509XZI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB664CBG)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB664CBG
size range: 200-210

value: ENCBS336WVW at ENCODE; https://www.encodeproject.org/ENCBS336WVW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB813TDH)

description:
https://www.encodeproject.org/experiments/ENCSR979IWW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR979IWW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB813TDH

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: John Stamatoyannopoulos, UW

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS870GYR at ENCODE; https://www.encodeproject.org/ENCBS870GYR/


title: Flow-FISH CRISPR screen from K562 (ENCLB767SPI)

description:
https://www.encodeproject.org/experiments/ENCSR976NSO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR976NSO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB767SPI
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB629LYQ)

description:
https://www.encodeproject.org/experiments/ENCSR976CAP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR976CAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB629LYQ

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: ENCBS527KTD at ENCODE; https://www.encodeproject.org/ENCBS527KTD/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB377MAC)

description:
https://www.encodeproject.org/experiments/ENCSR972MPK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR972MPK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB377MAC

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: female

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS169LXJ at ENCODE; https://www.encodeproject.org/ENCBS169LXJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB750LXZ)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB750LXZ
size range: 200-210

value: cell line

value: adult

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB625HSS)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB625HSS
size range: 200-210

value: ENCBS815NBH at ENCODE; https://www.encodeproject.org/ENCBS815NBH/


title: Flow-FISH CRISPR screen from K562 (ENCLB342ZYZ)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB342ZYZ
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB182DAL)

description:
https://www.encodeproject.org/experiments/ENCSR977MYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR977MYO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB182DAL

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS930WNG at ENCODE; https://www.encodeproject.org/ENCBS930WNG/


title: Flow-FISH CRISPR screen from K562 (ENCLB552GRX)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB552GRX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS336WVW at ENCODE; https://www.encodeproject.org/ENCBS336WVW/


title: Flow-FISH CRISPR screen from K562 (ENCLB246QYQ)

description:
https://www.encodeproject.org/experiments/ENCSR972IXB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR972IXB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB246QYQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB852TFC)

description:
https://www.encodeproject.org/experiments/ENCSR969XPT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR969XPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB852TFC
size range: 200-210

value: ENCBS350GCY at ENCODE; https://www.encodeproject.org/ENCBS350GCY/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB233ZIV)

description:
https://www.encodeproject.org/experiments/ENCSR970HKQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR970HKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB233ZIV

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS566WFB at ENCODE; https://www.encodeproject.org/ENCBS566WFB/


title: Flow-FISH CRISPR screen from K562 (ENCLB889TRJ)

description:
https://www.encodeproject.org/experiments/ENCSR969XPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR969XPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB889TRJ
size range: 200-210

value: cell line

value: adult

value: Jesse Engreitz, Stanford


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB624BJW)

description:
https://www.encodeproject.org/experiments/ENCSR972MPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR972MPK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB624BJW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS693NYB at ENCODE; https://www.encodeproject.org/ENCBS693NYB/


title: Flow-FISH CRISPR screen from K562 (ENCLB726ZFV)

description:
https://www.encodeproject.org/experiments/ENCSR969XPT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR969XPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB726ZFV
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB254ALP)

description:
https://www.encodeproject.org/experiments/ENCSR969XPT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR969XPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB254ALP
size range: 200-210


title: DNase-seq from left lung (ENCLB145NFK)

description:
https://www.encodeproject.org/experiments/ENCSR964DJB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR964DJB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145NFK

source_name: Homo sapiens male adult (40 years) left lung tissue

value: left lung

value: tissue

value: male

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS040QBP at ENCODE; https://www.encodeproject.org/ENCBS040QBP/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB506BES)

description:
https://www.encodeproject.org/experiments/ENCSR968CBW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR968CBW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB506BES

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: female

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS331USU at ENCODE; https://www.encodeproject.org/ENCBS331USU/


title: DNase-seq from ovary (ENCLB818EXA)

description:
https://www.encodeproject.org/experiments/ENCSR966LKR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966LKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB818EXA

source_name: Homo sapiens female adult (46 years) ovary tissue, preserved by flash-freezing

value: ovary

value: DM:no; HTN:no; CAD:no

value: adult

value: 46 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS598ITE at ENCODE; https://www.encodeproject.org/ENCBS598ITE/

value: Derived from ENCODE donor ENCDO411EVD; https://www.encodeproject.org/ENCDO411EVD/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB606KHF)

description:
https://www.encodeproject.org/experiments/ENCSR962BSK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR962BSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB606KHF

value: CD4-positive, alpha-beta T cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: ENCBS071VVE at ENCODE; https://www.encodeproject.org/ENCBS071VVE/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB319THF)

description:
https://www.encodeproject.org/experiments/ENCSR976CAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR976CAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB319THF

value: primary cell

value: female

value: 33 year

value: ENCBS862TOS at ENCODE; https://www.encodeproject.org/ENCBS862TOS/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB959RCX)

description:
https://www.encodeproject.org/experiments/ENCSR966NJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966NJV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB959RCX

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS207OYQ at ENCODE; https://www.encodeproject.org/ENCBS207OYQ/


title: DNase-seq from left lung (ENCLB614OSU)

description:
https://www.encodeproject.org/experiments/ENCSR964DJB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR964DJB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB614OSU

value: left lung

value: tissue

value: DM:no; HTN:yes; CAD:no

value: adult

value: 40 year

value: Shin Lin

value: ENCBS394AER at ENCODE; https://www.encodeproject.org/ENCBS394AER/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB289EAZ)

description:
https://www.encodeproject.org/experiments/ENCSR957ATV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR957ATV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB289EAZ

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: ENCBS436BIV at ENCODE; https://www.encodeproject.org/ENCBS436BIV/


title: Flow-FISH CRISPR screen from BJAB (ENCLB069LNL)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB069LNL
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: BJAB

value: cell line

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS129PKC at ENCODE; https://www.encodeproject.org/ENCBS129PKC/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB992SJH)

description:
https://www.encodeproject.org/experiments/ENCSR956PYO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR956PYO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB992SJH

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS572DCW at ENCODE; https://www.encodeproject.org/ENCBS572DCW/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB913TCH)

description:
https://www.encodeproject.org/experiments/ENCSR956PYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR956PYO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB913TCH

value: adult

value: ENCBS492LCX at ENCODE; https://www.encodeproject.org/ENCBS492LCX/


title: Flow-FISH CRISPR screen from BJAB (ENCLB397MIX)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB397MIX
size range: 200-210

value: BJAB

value: female


title: Flow-FISH CRISPR screen from BJAB (ENCLB080ETI)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB080ETI
size range: 200-210

value: cell line

value: child

value: ENCBS127VON at ENCODE; https://www.encodeproject.org/ENCBS127VON/


title: Flow-FISH CRISPR screen from BJAB (ENCLB681QRB)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB681QRB
size range: 200-210

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB903PQS)

description:
https://www.encodeproject.org/experiments/ENCSR956DYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR956DYM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB903PQS

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: primary cell

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS275MIV at ENCODE; https://www.encodeproject.org/ENCBS275MIV/


title: DNase-seq from putamen (ENCLB384IDZ)

description:
https://www.encodeproject.org/experiments/ENCSR970HYV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR970HYV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB384IDZ

source_name: Homo sapiens male adult (87 years) putamen tissue

value: putamen

value: tissue

value: male

value: 87 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS894OKG at ENCODE; https://www.encodeproject.org/ENCBS894OKG/


title: Flow-FISH CRISPR screen from BJAB (ENCLB658SKM)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB658SKM
size range: 200-210

value: BJAB

value: cell line

value: female

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB685NPQ)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB685NPQ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS498SHJ at ENCODE; https://www.encodeproject.org/ENCBS498SHJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB286DFB)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB286DFB
size range: 200-210

value: ATCC

value: ENCBS456HYS at ENCODE; https://www.encodeproject.org/ENCBS456HYS/


title: Flow-FISH CRISPR screen from K562 (ENCLB743OIE)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB743OIE
size range: 200-210

value: ENCBS174DPQ at ENCODE; https://www.encodeproject.org/ENCBS174DPQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB323KGG)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB323KGG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB053TAS)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB053TAS
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB103TOM)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB103TOM
size range: 200-210

value: child

value: 5 year

value: ENCBS127VON at ENCODE; https://www.encodeproject.org/ENCBS127VON/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB754EVM)

description:
https://www.encodeproject.org/experiments/ENCSR962BSK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR962BSK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB754EVM

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS487VAK at ENCODE; https://www.encodeproject.org/ENCBS487VAK/


title: Flow-FISH CRISPR screen from K562 (ENCLB730GDO)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB730GDO
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB363LJZ)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB363LJZ
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB229YHT)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB229YHT
size range: 200-210

value: ENCBS784HWP at ENCODE; https://www.encodeproject.org/ENCBS784HWP/


title: Flow-FISH CRISPR screen from K562 (ENCLB805CBB)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB805CBB
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB121GHB)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB121GHB
size range: 200-210

value: BJAB

value: child

value: 5 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS129PKC at ENCODE; https://www.encodeproject.org/ENCBS129PKC/


title: Flow-FISH CRISPR screen from BJAB (ENCLB175MKA)

description:
https://www.encodeproject.org/experiments/ENCSR955XRR/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR955XRR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB175MKA
size range: 200-210

value: ENCBS127VON at ENCODE; https://www.encodeproject.org/ENCBS127VON/


title: Flow-FISH CRISPR screen from K562 (ENCLB011WMV)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB011WMV
size range: 200-210

value: ENCBS456HYS at ENCODE; https://www.encodeproject.org/ENCBS456HYS/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB083UFE)

description:
https://www.encodeproject.org/experiments/ENCSR961WRZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR961WRZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083UFE

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS103UAH at ENCODE; https://www.encodeproject.org/ENCBS103UAH/


title: Flow-FISH CRISPR screen from K562 (ENCLB603RIL)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB603RIL
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS174DPQ at ENCODE; https://www.encodeproject.org/ENCBS174DPQ/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB510DSI)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB510DSI
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: acute monocytic leukemia

value: child

value: 1 year

value: ATCC

value: ENCBS025FIC at ENCODE; https://www.encodeproject.org/ENCBS025FIC/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB612DSX)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB612DSX
size range: 200-210

value: male

value: ENCBS447RBH at ENCODE; https://www.encodeproject.org/ENCBS447RBH/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB404UDT)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB404UDT
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB785VWQ)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB785VWQ
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB351RXY)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB351RXY
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB831CKY)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB831CKY
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB958IYO)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB958IYO
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB924JNU)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB924JNU
size range: 200-210

value: ENCBS509RWE at ENCODE; https://www.encodeproject.org/ENCBS509RWE/


title: Flow-FISH CRISPR screen from K562 (ENCLB366XHV)

description:
https://www.encodeproject.org/experiments/ENCSR955LSF/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR955LSF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB366XHV
size range: 200-210

value: ENCBS456HYS at ENCODE; https://www.encodeproject.org/ENCBS456HYS/


title: Flow-FISH CRISPR screen from K562 (ENCLB757ISS)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB757ISS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB506EPG)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB506EPG
size range: 200-210

value: ENCBS902UDV at ENCODE; https://www.encodeproject.org/ENCBS902UDV/


title: Flow-FISH CRISPR screen from K562 (ENCLB395IBW)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB395IBW
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from THP-1 (ENCLB133AWZ)

description:
https://www.encodeproject.org/experiments/ENCSR954RPE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR954RPE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB133AWZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB761CDM)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB761CDM
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB652IFI)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB652IFI
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: ENCBS082UQB at ENCODE; https://www.encodeproject.org/ENCBS082UQB/


title: Flow-FISH CRISPR screen from K562 (ENCLB229XHH)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB229XHH
size range: 200-210

value: adult

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB607DTE)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB607DTE
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB120ITA)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB120ITA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB002MEV)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB002MEV
size range: 200-210

value: ENCBS621RTG at ENCODE; https://www.encodeproject.org/ENCBS621RTG/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB146HBC)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB146HBC
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 5 ug/mL anti-CD3 for 4 hours, 100 ng/mL phorbol 12-myristate 13-acetate for 4 hours

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS521FMM at ENCODE; https://www.encodeproject.org/ENCBS521FMM/


title: Flow-FISH CRISPR screen from K562 (ENCLB164IWO)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB164IWO
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB014URE)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB014URE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB145UDU)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB145UDU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB193JWL)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB193JWL
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB937YEV)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB937YEV
size range: 200-210

value: male

value: ENCBS435ECX at ENCODE; https://www.encodeproject.org/ENCBS435ECX/


title: Flow-FISH CRISPR screen from K562 (ENCLB921BQX)

description:
https://www.encodeproject.org/experiments/ENCSR953JTQ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR953JTQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB921BQX
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from Jurkat (ENCLB925QXW)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB925QXW
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB593RZJ)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB593RZJ
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB405XXK)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB405XXK
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB199JGZ)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB199JGZ
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB334DCM)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB334DCM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB691ITN)

description:
https://www.encodeproject.org/experiments/ENCSR953OZA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR953OZA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB691ITN
size range: 200-210

value: female

value: ENCBS902UDV at ENCODE; https://www.encodeproject.org/ENCBS902UDV/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB173IKK)

description:
https://www.encodeproject.org/experiments/ENCSR952HII/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR952HII
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB173IKK
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB149QYX)

description:
https://www.encodeproject.org/experiments/ENCSR951TBX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR951TBX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB149QYX

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS870XOQ at ENCODE; https://www.encodeproject.org/ENCBS870XOQ/


title: DNase-seq from lower lobe of left lung (ENCLB171HIC)

description:
https://www.encodeproject.org/experiments/ENCSR948JPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR948JPR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB171HIC

source_name: Homo sapiens female adult (59 years) lower lobe of left lung tissue

value: lower lobe of left lung

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: adult

value: 59 year

value: Shin Lin

value: ENCBS266HYO at ENCODE; https://www.encodeproject.org/ENCBS266HYO/


title: DNase-seq from HUDEP-2 (ENCLB472YTE)

description:
https://www.encodeproject.org/experiments/ENCSR949QCD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR949QCD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB472YTE

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS947GSF at ENCODE; https://www.encodeproject.org/ENCBS947GSF/


title: DNase-seq from immature natural killer cell (ENCLB511XFD)

description:
https://www.encodeproject.org/experiments/ENCSR945FUE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR945FUE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB511XFD

value: immature natural killer cell

value: ENCBS041LXI at ENCODE; https://www.encodeproject.org/ENCBS041LXI/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB411XKP)

description:
https://www.encodeproject.org/experiments/ENCSR944FRU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR944FRU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB411XKP

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: female

value: 33 year

value: AllCells

value: ENCBS643CAS at ENCODE; https://www.encodeproject.org/ENCBS643CAS/


title: DNase-seq from CD14-positive monocyte (ENCLB583TBN)

description:
https://www.encodeproject.org/experiments/ENCSR943TGB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR943TGB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB583TBN

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell treated with 0.1% dmso for 4.5 hours

value: CD14-positive monocyte

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS010KCO at ENCODE; https://www.encodeproject.org/ENCBS010KCO/


title: DNase-seq from CD14-positive monocyte (ENCLB370BOM)

description:
https://www.encodeproject.org/experiments/ENCSR943TGB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR943TGB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB370BOM

value: male

value: adult

value: ENCBS210HMR at ENCODE; https://www.encodeproject.org/ENCBS210HMR/


title: DNase-seq from AG09319 (ENCLB845AOU)

description:
https://www.encodeproject.org/experiments/ENCSR943TDK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943TDK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845AOU

source_name: Homo sapiens AG09319 cell line

value: cell line

value: unknown

value: Coriell

value: ENCBS664UZD at ENCODE; https://www.encodeproject.org/ENCBS664UZD/


title: Flow-FISH CRISPR screen from K562 (ENCLB719HOO)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB719HOO
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS832DXH at ENCODE; https://www.encodeproject.org/ENCBS832DXH/


title: Flow-FISH CRISPR screen from K562 (ENCLB478NDA)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB478NDA
size range: 200-210

value: ENCBS913OAB at ENCODE; https://www.encodeproject.org/ENCBS913OAB/


title: DNase-seq from brain (ENCLB559NVS)

description:
https://www.encodeproject.org/experiments/ENCSR941URS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR941URS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB559NVS

source_name: Homo sapiens male adult (82 years) brain tissue

value: brain

value: tissue

value: 82 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS167SDN at ENCODE; https://www.encodeproject.org/ENCBS167SDN/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB490YEG)

description:
https://www.encodeproject.org/experiments/ENCSR940WCM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR940WCM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB490YEG

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 34 year

value: AllCells

value: ENCBS876OZB at ENCODE; https://www.encodeproject.org/ENCBS876OZB/


title: DNase-seq from CD14-positive monocyte (ENCLB370XHK)

description:
https://www.encodeproject.org/experiments/ENCSR943TGB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943TGB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB370XHK

value: CD14-positive monocyte

value: male

value: 24 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS040PMV at ENCODE; https://www.encodeproject.org/ENCBS040PMV/


title: DNase-seq from heart left ventricle (ENCLB630NTW)

description:
https://www.encodeproject.org/experiments/ENCSR938ZIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR938ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB630NTW

source_name: Homo sapiens male adult (66 years) heart left ventricle tissue

value: heart left ventricle

value: tissue

value: ischemic (EF 29% LVEDD 5.4; RV normal size, mild dysfunction)

value: 66 year

value: Michael Snyder, Stanford

value: Shin Lin

value: ENCBS016KBT at ENCODE; https://www.encodeproject.org/ENCBS016KBT/


title: Flow-FISH CRISPR screen from K562 (ENCLB949PVR)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB949PVR
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS832DXH at ENCODE; https://www.encodeproject.org/ENCBS832DXH/


title: Flow-FISH CRISPR screen from K562 (ENCLB686HOV)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB686HOV
size range: 200-210

value: ENCBS913OAB at ENCODE; https://www.encodeproject.org/ENCBS913OAB/


title: Flow-FISH CRISPR screen from K562 (ENCLB283NSA)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB283NSA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB884AFY)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB884AFY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB044EIG)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB044EIG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB112TYS)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB112TYS
size range: 200-210

value: ENCBS207OTZ at ENCODE; https://www.encodeproject.org/ENCBS207OTZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB619ZAM)

description:
https://www.encodeproject.org/experiments/ENCSR938WAX/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR938WAX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB619ZAM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB583ITK)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB583ITK
size range: 200-210

value: ENCBS415BOV at ENCODE; https://www.encodeproject.org/ENCBS415BOV/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB712LUB)

description:
https://www.encodeproject.org/experiments/ENCSR938ILX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR938ILX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB712LUB

value: CD4-positive, alpha-beta T cell

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS925YAT at ENCODE; https://www.encodeproject.org/ENCBS925YAT/


title: Flow-FISH CRISPR screen from K562 (ENCLB792QXE)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB792QXE
size range: 200-210

value: cell line

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB637ODM)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB637ODM
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB656TVG)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB656TVG
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS594QJC at ENCODE; https://www.encodeproject.org/ENCBS594QJC/


title: Flow-FISH CRISPR screen from K562 (ENCLB112HAU)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB112HAU
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB240EJE)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB240EJE
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB083IWB)

description:
https://www.encodeproject.org/experiments/ENCSR938ILX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR938ILX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083IWB

value: ENCBS462GNE at ENCODE; https://www.encodeproject.org/ENCBS462GNE/


title: Flow-FISH CRISPR screen from K562 (ENCLB626TDU)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB626TDU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB773ONV)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB773ONV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB960TFH)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB960TFH
size range: 200-210

value: ENCBS415BOV at ENCODE; https://www.encodeproject.org/ENCBS415BOV/


title: Flow-FISH CRISPR screen from K562 (ENCLB507YPI)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB507YPI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB727XHO)

description:
https://www.encodeproject.org/experiments/ENCSR938FTD/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR938FTD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB727XHO
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB214LGP)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB214LGP
size range: 200-210

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS939HVW at ENCODE; https://www.encodeproject.org/ENCBS939HVW/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB003CKG)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB003CKG
size range: 200-210

value: male

value: ENCBS846WAX at ENCODE; https://www.encodeproject.org/ENCBS846WAX/


title: DNase-seq from left lung (ENCLB612DOV)

description:
https://www.encodeproject.org/experiments/ENCSR934FJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR934FJL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB612DOV

source_name: Homo sapiens female child (16 years) left lung tissue

value: left lung

value: tissue

value: DM:no; HTN:no; CAD:no

value: 16 year

value: John Stamatoyannopoulos, UW

value: Yiing Lin, MD, PhD

value: ENCBS224ZDG at ENCODE; https://www.encodeproject.org/ENCBS224ZDG/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB625EDE)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB625EDE
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from THP-1 (ENCLB946PGM)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB946PGM
size range: 200-210

value: ATCC


title: DNase-seq from activated T-cell (ENCLB911CMQ)

description:
https://www.encodeproject.org/experiments/ENCSR929DML/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR929DML
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB911CMQ

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: activated T-cell

value: primary cell

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS951RSN at ENCODE; https://www.encodeproject.org/ENCBS951RSN/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB850FSH)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB850FSH
size range: 200-210

value: male

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS846WAX at ENCODE; https://www.encodeproject.org/ENCBS846WAX/


title: Flow-FISH CRISPR screen from K562 (ENCLB709ZXV)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB709ZXV
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS467GZL at ENCODE; https://www.encodeproject.org/ENCBS467GZL/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB034HCR)

description:
https://www.encodeproject.org/experiments/ENCSR926VLE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR926VLE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB034HCR

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS779IES at ENCODE; https://www.encodeproject.org/ENCBS779IES/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB724LJY)

description:
https://www.encodeproject.org/experiments/ENCSR926QVW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR926QVW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB724LJY

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: primary cell

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS161THC at ENCODE; https://www.encodeproject.org/ENCBS161THC/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB937RWC)

description:
https://www.encodeproject.org/experiments/ENCSR931GDW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR931GDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB937RWC

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS588RAA at ENCODE; https://www.encodeproject.org/ENCBS588RAA/


title: Flow-FISH CRISPR screen from K562 (ENCLB870PCV)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB870PCV
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from T-helper 17 cell (ENCLB924QHD)

description:
https://www.encodeproject.org/experiments/ENCSR929BII/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR929BII
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB924QHD

source_name: Homo sapiens male adult (30 years) T-helper 17 primary cell

value: T-helper 17 cell

value: male

value: 30 year

value: ENCBS326NGJ at ENCODE; https://www.encodeproject.org/ENCBS326NGJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB328OEA)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB328OEA
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS647OQS at ENCODE; https://www.encodeproject.org/ENCBS647OQS/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB145DWZ)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB145DWZ
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS939HVW at ENCODE; https://www.encodeproject.org/ENCBS939HVW/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB984YEF)

description:
https://www.encodeproject.org/experiments/ENCSR931GDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR931GDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB984YEF

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS686JUX at ENCODE; https://www.encodeproject.org/ENCBS686JUX/


title: Flow-FISH CRISPR screen from K562 (ENCLB742XGC)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB742XGC
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB778GUH)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB778GUH
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS467GZL at ENCODE; https://www.encodeproject.org/ENCBS467GZL/


title: Flow-FISH CRISPR screen from K562 (ENCLB841IFU)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB841IFU
size range: 200-210

value: 53 year

value: ENCBS647OQS at ENCODE; https://www.encodeproject.org/ENCBS647OQS/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB261MXO)

description:
https://www.encodeproject.org/experiments/ENCSR922ZKR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922ZKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB261MXO

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours

value: male

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS146QXZ at ENCODE; https://www.encodeproject.org/ENCBS146QXZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB021KQK)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB021KQK
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB472YKJ)

description:
https://www.encodeproject.org/experiments/ENCSR925SNA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR925SNA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB472YKJ
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB191OFV)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB191OFV
size range: 200-210

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS939HVW at ENCODE; https://www.encodeproject.org/ENCBS939HVW/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB911JTN)

description:
https://www.encodeproject.org/experiments/ENCSR922ZKR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR922ZKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB911JTN

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS522VUO at ENCODE; https://www.encodeproject.org/ENCBS522VUO/


title: DNase-seq from HUDEP-2 (ENCLB841VPN)

description:
https://www.encodeproject.org/experiments/ENCSR912OBS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR912OBS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB841VPN

value: cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS611BPC at ENCODE; https://www.encodeproject.org/ENCBS611BPC/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB993QUV)

description:
https://www.encodeproject.org/experiments/ENCSR936ITA/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR936ITA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB993QUV
size range: 200-210

value: male

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS846WAX at ENCODE; https://www.encodeproject.org/ENCBS846WAX/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB061PUM)

description:
https://www.encodeproject.org/experiments/ENCSR914WLK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR914WLK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB061PUM

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours

value: female

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS049HZB at ENCODE; https://www.encodeproject.org/ENCBS049HZB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB408FBT)

description:
https://www.encodeproject.org/experiments/ENCSR922GGG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922GGG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB408FBT

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours

value: primary cell

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS758AJO at ENCODE; https://www.encodeproject.org/ENCBS758AJO/


title: DNase-seq from GM12878 (ENCLB879PFJ)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB879PFJ

source_name: Homo sapiens GM12878 cell line

value: cell line

value: John Stamatoyannopoulos, UW

value: Coriell

value: ENCBS525SDQ at ENCODE; https://www.encodeproject.org/ENCBS525SDQ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB352VMX)

description:
https://www.encodeproject.org/experiments/ENCSR921CMS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR921CMS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB352VMX

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours

value: male

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS384XXA at ENCODE; https://www.encodeproject.org/ENCBS384XXA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB736DHY)

description:
https://www.encodeproject.org/experiments/ENCSR918XFE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR918XFE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB736DHY

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: adult

value: 37 year

value: Shelly Heimfeld

value: ENCBS149VWR at ENCODE; https://www.encodeproject.org/ENCBS149VWR/


title: DNase-seq from GM12878 (ENCLB844ZIN)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB844ZIN

value: unknown

value: ENCBS320EPM at ENCODE; https://www.encodeproject.org/ENCBS320EPM/