title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB388MIA)

description:
https://www.encodeproject.org/experiments/ENCSR266MTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR266MTD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB388MIA

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: 33 year

value: ENCBS539YJO at ENCODE; https://www.encodeproject.org/ENCBS539YJO/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB048CTE)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR266MPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR266MPT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB048CTE

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

tag: biosample encode accession

tag: encode accession

tag: Sex

value: male

tag: dev stage

value: adult

tag: age

value: 38 year

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

tag: link

value: ENCBS599FNC at ENCODE; https://www.encodeproject.org/ENCBS599FNC/


title: Flow-FISH CRISPR screen from K562 (ENCLB574YMS)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB574YMS
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS096VNS at ENCODE; https://www.encodeproject.org/ENCBS096VNS/


title: Flow-FISH CRISPR screen from K562 (ENCLB900KEZ)

description:
https://www.encodeproject.org/experiments/ENCSR497WYB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR497WYB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB900KEZ
size range: 200-210

value: ENCBS168RFE at ENCODE; https://www.encodeproject.org/ENCBS168RFE/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB872IZB)

description:
https://www.encodeproject.org/experiments/ENCSR496NUW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496NUW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB872IZB

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS106LTZ at ENCODE; https://www.encodeproject.org/ENCBS106LTZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB853MLN)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB853MLN
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB088OXH)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB088OXH
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB659LXW)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB659LXW
size range: 200-210

value: ENCBS711UUH at ENCODE; https://www.encodeproject.org/ENCBS711UUH/


title: Flow-FISH CRISPR screen from K562 (ENCLB004ZQD)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB004ZQD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB233YHZ)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB233YHZ
size range: 200-210


title: DNase-seq from NK-92 (ENCLB096KHB)

description:
https://www.encodeproject.org/experiments/ENCSR490KLB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR490KLB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB096KHB

source_name: Homo sapiens NK-92 cell line treated with 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours

value: male

value: 50 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS506BHA at ENCODE; https://www.encodeproject.org/ENCBS506BHA/


title: DNase-seq from bone marrow (ENCLB994JYT)

description:
https://www.encodeproject.org/experiments/ENCSR494NUO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR494NUO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB994JYT

source_name: Homo sapiens bone marrow tissue

value: bone marrow

value: tissue

value: not collected

value: unknown

value: Shelly Heimfeld

value: ENCBS178RRO at ENCODE; https://www.encodeproject.org/ENCBS178RRO/


title: Flow-FISH CRISPR screen from K562 (ENCLB619TIY)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB619TIY
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS096VNS at ENCODE; https://www.encodeproject.org/ENCBS096VNS/


title: DNase-seq from K562 (ENCLB869NBT)

description:
https://www.encodeproject.org/experiments/ENCSR263BDS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR263BDS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB869NBT

source_name: Homo sapiens K562 cell line

value: female

value: adult

value: ENCBS152KGF at ENCODE; https://www.encodeproject.org/ENCBS152KGF/


title: DNase-seq from HUDEP-2 (ENCLB775ZWV)

description:
https://www.encodeproject.org/experiments/ENCSR264YFF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR264YFF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB775ZWV

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS345BHV at ENCODE; https://www.encodeproject.org/ENCBS345BHV/


title: Flow-FISH CRISPR screen from K562 (ENCLB949ZWZ)

description:
https://www.encodeproject.org/experiments/ENCSR489UHA/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR489UHA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB949ZWZ
size range: 200-210

value: ENCBS951EVK at ENCODE; https://www.encodeproject.org/ENCBS951EVK/


title: Flow-FISH CRISPR screen from K562 (ENCLB764XCU)

description:
https://www.encodeproject.org/experiments/ENCSR265XMO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR265XMO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB764XCU
size range: 200-210

value: ENCBS711UUH at ENCODE; https://www.encodeproject.org/ENCBS711UUH/


title: Flow-FISH CRISPR screen from K562 (ENCLB112QXJ)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB112QXJ
size range: 200-210

value: ENCBS342SAC at ENCODE; https://www.encodeproject.org/ENCBS342SAC/


title: DNase-seq from NK-92 (ENCLB156HHX)

description:
https://www.encodeproject.org/experiments/ENCSR490KLB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR490KLB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB156HHX

value: 50 year

value: treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29460; treatment_term_name:Interleukin-12 subunit beta; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS760TLK at ENCODE; https://www.encodeproject.org/ENCBS760TLK/


title: Flow-FISH CRISPR screen from K562 (ENCLB482MTX)

description:
https://www.encodeproject.org/experiments/ENCSR489UHA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR489UHA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB482MTX
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB035MFW)

description:
https://www.encodeproject.org/experiments/ENCSR489UHA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR489UHA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB035MFW
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from NK-92 (ENCLB483JHG)

description:
https://www.encodeproject.org/experiments/ENCSR490KLB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR490KLB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB483JHG

value: adult

value: ENCBS671EYU at ENCODE; https://www.encodeproject.org/ENCBS671EYU/


title: Flow-FISH CRISPR screen from K562 (ENCLB914VYY)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB914VYY
size range: 200-210

value: female


title: DNase-seq from T-cell (ENCLB694MQS)

description:
https://www.encodeproject.org/experiments/ENCSR262WQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR262WQN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB694MQS

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS458CNA at ENCODE; https://www.encodeproject.org/ENCBS458CNA/


title: Flow-FISH CRISPR screen from K562 (ENCLB180LZE)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB180LZE
size range: 200-210

value: ENCBS394KGT at ENCODE; https://www.encodeproject.org/ENCBS394KGT/


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB771BWL)

description:
https://www.encodeproject.org/experiments/ENCSR262CJS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR262CJS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB771BWL

source_name: Homo sapiens male adult (56 years) effector memory CD4-positive, alpha-beta T primary cell

value: male

value: 56 year

value: ENCBS519OBB at ENCODE; https://www.encodeproject.org/ENCBS519OBB/


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB259POY)

description:
https://www.encodeproject.org/experiments/ENCSR262CJS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR262CJS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB259POY

value: ENCBS748DIT at ENCODE; https://www.encodeproject.org/ENCBS748DIT/


title: Flow-FISH CRISPR screen from K562 (ENCLB398QMY)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB398QMY
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS342SAC at ENCODE; https://www.encodeproject.org/ENCBS342SAC/


title: Flow-FISH CRISPR screen from K562 (ENCLB828YNJ)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB828YNJ
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB013FVU)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB013FVU
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB568KCE)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB568KCE
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB942JWC)

description:
https://www.encodeproject.org/experiments/ENCSR261HXP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR261HXP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB942JWC

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: ENCBS165BAX at ENCODE; https://www.encodeproject.org/ENCBS165BAX/


title: Flow-FISH CRISPR screen from K562 (ENCLB966VBA)

description:
https://www.encodeproject.org/experiments/ENCSR489UHA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR489UHA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB966VBA
size range: 200-210

value: ENCBS951EVK at ENCODE; https://www.encodeproject.org/ENCBS951EVK/


title: Flow-FISH CRISPR screen from K562 (ENCLB128FFP)

description:
https://www.encodeproject.org/experiments/ENCSR260DBV/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR260DBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB128FFP
size range: 200-210

value: ENCBS065XYX at ENCODE; https://www.encodeproject.org/ENCBS065XYX/


title: DNase-seq from activated gamma-delta T cell (ENCLB069DCA)

description:
https://www.encodeproject.org/experiments/ENCSR260SDO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR260SDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB069DCA

source_name: Homo sapiens female adult (25 years) activated gamma-delta T primary cell

value: activated gamma-delta T cell

value: 25 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS462WXG at ENCODE; https://www.encodeproject.org/ENCBS462WXG/


title: Flow-FISH CRISPR screen from K562 (ENCLB512SKF)

description:
https://www.encodeproject.org/experiments/ENCSR261MNB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR261MNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB512SKF
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS394KGT at ENCODE; https://www.encodeproject.org/ENCBS394KGT/


title: Flow-FISH CRISPR screen from K562 (ENCLB721TMJ)

description:
https://www.encodeproject.org/experiments/ENCSR260DBV/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR260DBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB721TMJ
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB625VQK)

description:
https://www.encodeproject.org/experiments/ENCSR260DBV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR260DBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB625VQK
size range: 200-210

value: female


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB544DNH)

description:
https://www.encodeproject.org/experiments/ENCSR259YKO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR259YKO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB544DNH

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: Shelly Heimfeld

value: ENCBS990JOK at ENCODE; https://www.encodeproject.org/ENCBS990JOK/


title: proliferation CRISPR screen from SW620 (ENCLB289XNG)

description:
https://www.encodeproject.org/experiments/ENCSR259XOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR259XOO
assay title: proliferation CRISPR screen
possible controls: ENCSR053SNW
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB289XNG
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens SW620 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: 50 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS977ZCJ at ENCODE; https://www.encodeproject.org/ENCBS977ZCJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB455XUG)

description:
https://www.encodeproject.org/experiments/ENCSR486EHB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR486EHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB455XUG
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS058XEU at ENCODE; https://www.encodeproject.org/ENCBS058XEU/


title: Flow-FISH CRISPR screen from K562 (ENCLB794NRK)

description:
https://www.encodeproject.org/experiments/ENCSR486EHB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR486EHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB794NRK
size range: 200-210

value: adult

value: 53 year


title: proliferation CRISPR screen from SW620 (ENCLB525XVX)

description:
https://www.encodeproject.org/experiments/ENCSR259XOO/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR259XOO
assay title: proliferation CRISPR screen
possible controls: ENCSR053SNW
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB525XVX
size range: 710-720

value: ATCC

value: ENCBS109UFG at ENCODE; https://www.encodeproject.org/ENCBS109UFG/


title: Flow-FISH CRISPR screen from K562 (ENCLB445WJW)

description:
https://www.encodeproject.org/experiments/ENCSR486EHB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR486EHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB445WJW
size range: 200-210

value: female

value: Jesse Engreitz, Stanford


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB414XXN)

description:
https://www.encodeproject.org/experiments/ENCSR485OYS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR485OYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB414XXN

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS088SSU at ENCODE; https://www.encodeproject.org/ENCBS088SSU/


title: Flow-FISH CRISPR screen from K562 (ENCLB152AQB)

description:
https://www.encodeproject.org/experiments/ENCSR486EHB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR486EHB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB152AQB
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB871SHR)

description:
https://www.encodeproject.org/experiments/ENCSR485OYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR485OYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB871SHR

value: male

value: ENCBS648QXX at ENCODE; https://www.encodeproject.org/ENCBS648QXX/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB743NRO)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB743NRO
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Lipopolysaccharide from Escherichia coli K12 for 4 hours

value: cell line

value: acute monocytic leukemia

value: child

value: 1 year

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS834QMN at ENCODE; https://www.encodeproject.org/ENCBS834QMN/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB521LGV)

description:
https://www.encodeproject.org/experiments/ENCSR258TNJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR258TNJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB521LGV

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS588EFP at ENCODE; https://www.encodeproject.org/ENCBS588EFP/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB442HPI)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB442HPI
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from THP-1 (ENCLB020DOD)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB020DOD
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB153TSA)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB153TSA
size range: 200-210

value: ENCBS219KUY at ENCODE; https://www.encodeproject.org/ENCBS219KUY/


title: DNase-seq from HUDEP-2 (ENCLB468LSX)

description:
https://www.encodeproject.org/experiments/ENCSR259QXF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR259QXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB468LSX

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS267LFT at ENCODE; https://www.encodeproject.org/ENCBS267LFT/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB756TIM)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB756TIM
size range: 200-210

value: male


title: DNase-seq from effector CD4-positive, alpha-beta T cell (ENCLB269WCS)

description:
https://www.encodeproject.org/experiments/ENCSR256URJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR256URJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB269WCS

source_name: Homo sapiens male adult (24 years) effector CD4-positive, alpha-beta T primary cell

value: primary cell

value: 24 year

value: AllCells

value: ENCBS301GXW at ENCODE; https://www.encodeproject.org/ENCBS301GXW/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB263ONU)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB263ONU
size range: 200-210

value: cell line

value: acute monocytic leukemia

value: child

value: 1 year

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from THP-1 (ENCLB127IYZ)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB127IYZ
size range: 200-210

value: Jesse Engreitz, Stanford


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB882ABF)

description:
https://www.encodeproject.org/experiments/ENCSR483FNY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR483FNY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB882ABF

value: CD4-positive, alpha-beta T cell

value: female

value: adult

value: 39 year

value: Shelly Heimfeld

value: ENCBS486SDZ at ENCODE; https://www.encodeproject.org/ENCBS486SDZ/


title: DNase-seq from HUDEP-2 (ENCLB525NLN)

description:
https://www.encodeproject.org/experiments/ENCSR482NEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR482NEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB525NLN

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS227RQG at ENCODE; https://www.encodeproject.org/ENCBS227RQG/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB550DGQ)

description:
https://www.encodeproject.org/experiments/ENCSR485MBR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR485MBR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB550DGQ
size range: 200-210

value: cell line

value: ATCC

value: ENCBS219KUY at ENCODE; https://www.encodeproject.org/ENCBS219KUY/


title: DNase-seq from HUDEP-2 (ENCLB099DDO)

description:
https://www.encodeproject.org/experiments/ENCSR259LQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR259LQP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB099DDO

value: ENCBS394NEE at ENCODE; https://www.encodeproject.org/ENCBS394NEE/


title: Flow-FISH CRISPR screen from K562 (ENCLB961MPT)

description:
https://www.encodeproject.org/experiments/ENCSR260DBV/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR260DBV
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB961MPT
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS065XYX at ENCODE; https://www.encodeproject.org/ENCBS065XYX/


title: DNase-seq from right cardiac atrium (ENCLB054TMX)

description:
https://www.encodeproject.org/experiments/ENCSR256KBZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR256KBZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB054TMX

source_name: Homo sapiens male adult (40 years) right cardiac atrium tissue

value: right cardiac atrium

value: tissue

value: DM:no; HTN:yes; CAD:no

value: 40 year

value: Shin Lin

value: ENCBS596ZFN at ENCODE; https://www.encodeproject.org/ENCBS596ZFN/


title: proliferation CRISPR screen from HCT116 (ENCLB481JRA)

description:
https://www.encodeproject.org/experiments/ENCSR255SPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR255SPT
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB481JRA
size range: 710-720

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 0 days post-nucleic acid delivery time

value: male

value: colorectal carcinoma

value: adult

value: 48 year

value: Bing Ren, UCSD

value: ENCBS879CLL at ENCODE; https://www.encodeproject.org/ENCBS879CLL/


title: proliferation CRISPR screen from HCT116 (ENCLB903EYP)

description:
https://www.encodeproject.org/experiments/ENCSR255SPT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR255SPT
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB903EYP
size range: 710-720

value: cell line

value: ATCC

value: ENCBS127OYL at ENCODE; https://www.encodeproject.org/ENCBS127OYL/


title: DNase-seq from immature natural killer cell (ENCLB579PSK)

description:
https://www.encodeproject.org/experiments/ENCSR480NHU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR480NHU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB579PSK

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS888VWO at ENCODE; https://www.encodeproject.org/ENCBS888VWO/


title: Flow-FISH CRISPR screen from BJAB (ENCLB104KIE)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB104KIE
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: BJAB

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS360BDZ at ENCODE; https://www.encodeproject.org/ENCBS360BDZ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB428YJX)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428YJX
size range: 200-210


title: Flow-FISH CRISPR screen from BJAB (ENCLB108HOH)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB108HOH
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB249YRT)

description:
https://www.encodeproject.org/experiments/ENCSR477GGR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR477GGR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB249YRT

value: male

value: adult

value: ENCBS228PNF at ENCODE; https://www.encodeproject.org/ENCBS228PNF/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB689UWL)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB689UWL
size range: 200-210

value: cell line

value: acute monocytic leukemia

value: 1 year

value: ATCC

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS101MFP at ENCODE; https://www.encodeproject.org/ENCBS101MFP/


title: DNase-seq from T-helper 2 cell (ENCLB134DXX)

description:
https://www.encodeproject.org/experiments/ENCSR254SIB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR254SIB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB134DXX

source_name: Homo sapiens male adult (38 years) T-helper 2 primary cell

value: T-helper 2 cell

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS752BDP at ENCODE; https://www.encodeproject.org/ENCBS752BDP/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB781KTF)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB781KTF
size range: 200-210

value: child

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from BJAB (ENCLB584FVY)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB584FVY
size range: 200-210

value: BJAB

value: female

value: 5 year

value: ENCBS793LMJ at ENCODE; https://www.encodeproject.org/ENCBS793LMJ/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB932SIL)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB932SIL
size range: 200-210

value: cell line

value: male

value: acute monocytic leukemia

value: ENCBS250KFF at ENCODE; https://www.encodeproject.org/ENCBS250KFF/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB103ZVS)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB103ZVS
size range: 200-210

value: 1 year

value: ATCC

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from BJAB (ENCLB293HAA)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB293HAA
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB849NGG)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB849NGG
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB505FZC)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB505FZC
size range: 200-210

value: ENCBS101MFP at ENCODE; https://www.encodeproject.org/ENCBS101MFP/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB872NHA)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB872NHA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB698JGQ)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB698JGQ
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS410KDX at ENCODE; https://www.encodeproject.org/ENCBS410KDX/


title: Flow-FISH CRISPR screen from BJAB (ENCLB087XDV)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB087XDV
size range: 200-210

value: child

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from BJAB (ENCLB859YGQ)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB859YGQ
size range: 200-210

value: BJAB

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB255CTC)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB255CTC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB841FEV)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB841FEV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB784BIQ)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB784BIQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB062NWV)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB062NWV
size range: 200-210

value: ENCBS332QWO at ENCODE; https://www.encodeproject.org/ENCBS332QWO/


title: Flow-FISH CRISPR screen from K562 (ENCLB860AOI)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860AOI
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB049AAH)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB049AAH
size range: 200-210


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB123GCM)

description:
https://www.encodeproject.org/experiments/ENCSR252WDE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR252WDE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123GCM

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS618RAP at ENCODE; https://www.encodeproject.org/ENCBS618RAP/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB578OOV)

description:
https://www.encodeproject.org/experiments/ENCSR473PCZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR473PCZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB578OOV
size range: 200-210

value: male

value: acute monocytic leukemia

value: 1 year

value: ATCC

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS250KFF at ENCODE; https://www.encodeproject.org/ENCBS250KFF/


title: Flow-FISH CRISPR screen from K562 (ENCLB457RXD)

description:
https://www.encodeproject.org/experiments/ENCSR473ERS/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR473ERS
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB457RXD
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB265BFZ)

description:
https://www.encodeproject.org/experiments/ENCSR472QAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR472QAJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB265BFZ

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: female

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS342YCP at ENCODE; https://www.encodeproject.org/ENCBS342YCP/


title: Flow-FISH CRISPR screen from BJAB (ENCLB345EIS)

description:
https://www.encodeproject.org/experiments/ENCSR480KTI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR480KTI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB345EIS
size range: 200-210

value: BJAB

value: cell line

value: child

value: 5 year

value: ENCBS360BDZ at ENCODE; https://www.encodeproject.org/ENCBS360BDZ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB148BIP)

description:
https://www.encodeproject.org/experiments/ENCSR252QDU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR252QDU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB148BIP

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS907MQR at ENCODE; https://www.encodeproject.org/ENCBS907MQR/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB936NXT)

description:
https://www.encodeproject.org/experiments/ENCSR471QHJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR471QHJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB936NXT

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: adult

value: 33 year

value: ENCBS544IAN at ENCODE; https://www.encodeproject.org/ENCBS544IAN/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB909PDR)

description:
https://www.encodeproject.org/experiments/ENCSR252HYG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR252HYG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB909PDR

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: 34 year

value: ENCBS825FTP at ENCODE; https://www.encodeproject.org/ENCBS825FTP/


title: DNase-seq from HUDEP-2 (ENCLB260XKT)

description:
https://www.encodeproject.org/experiments/ENCSR471LGH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR471LGH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB260XKT

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS677GMI at ENCODE; https://www.encodeproject.org/ENCBS677GMI/


title: Flow-FISH CRISPR screen from K562 (ENCLB257BIN)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB257BIN
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS578HHT at ENCODE; https://www.encodeproject.org/ENCBS578HHT/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB755RJF)

description:
https://www.encodeproject.org/experiments/ENCSR471QHJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR471QHJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB755RJF

value: CD8-positive, alpha-beta T cell

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS334OZW at ENCODE; https://www.encodeproject.org/ENCBS334OZW/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB986RHA)

description:
https://www.encodeproject.org/experiments/ENCSR469VWD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR469VWD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB986RHA

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours

value: male

value: adult

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS542ARN at ENCODE; https://www.encodeproject.org/ENCBS542ARN/


title: DNase-seq from activated CD8-positive, alpha-beta T cell (ENCLB262LGG)

description:
https://www.encodeproject.org/experiments/ENCSR467EZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR467EZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB262LGG

source_name: Homo sapiens male adult (21 years) activated CD8-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads

value: 21 year

value: Yijun Ruan, JAX

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS566UMM at ENCODE; https://www.encodeproject.org/ENCBS566UMM/

value: Derived from ENCODE donor ENCDO781BMZ; https://www.encodeproject.org/ENCDO781BMZ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB337BBE)

description:
https://www.encodeproject.org/experiments/ENCSR469VWD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR469VWD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB337BBE

value: ENCBS497EZJ at ENCODE; https://www.encodeproject.org/ENCBS497EZJ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB804LWP)

description:
https://www.encodeproject.org/experiments/ENCSR469JAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR469JAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB804LWP

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: 37 year

value: Shelly Heimfeld

value: ENCBS394MST at ENCODE; https://www.encodeproject.org/ENCBS394MST/


title: Flow-FISH CRISPR screen from K562 (ENCLB324EOR)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB324EOR
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS665LLO at ENCODE; https://www.encodeproject.org/ENCBS665LLO/


title: Flow-FISH CRISPR screen from K562 (ENCLB541LXZ)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB541LXZ
size range: 200-210

value: adult

value: ENCBS578HHT at ENCODE; https://www.encodeproject.org/ENCBS578HHT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB449PVW)

description:
https://www.encodeproject.org/experiments/ENCSR466VMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR466VMM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB449PVW

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS267FRH at ENCODE; https://www.encodeproject.org/ENCBS267FRH/


title: Flow-FISH CRISPR screen from K562 (ENCLB120JCN)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB120JCN
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB808FRG)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB808FRG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB282RSE)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB282RSE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB515ZHC)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB515ZHC
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB597SKF)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB597SKF
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Lipopolysaccharide from Escherichia coli K12 for 4 hours

value: male

value: acute monocytic leukemia

value: child

value: 1 year

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS449DOO at ENCODE; https://www.encodeproject.org/ENCBS449DOO/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB085NES)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB085NES
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from THP-1 (ENCLB951MBJ)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB951MBJ
size range: 200-210

value: ATCC

value: ENCBS920APB at ENCODE; https://www.encodeproject.org/ENCBS920APB/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB727WNX)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB727WNX
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 5 ug/mL anti-CD3 for 4 hours, 100 ng/mL phorbol 12-myristate 13-acetate for 4 hours

value: Jurkat

value: acute T cell leukemia

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS017YHL at ENCODE; https://www.encodeproject.org/ENCBS017YHL/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB538QNB)

description:
https://www.encodeproject.org/experiments/ENCSR252QDU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR252QDU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB538QNB

value: primary cell

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS847XQJ at ENCODE; https://www.encodeproject.org/ENCBS847XQJ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB280AXB)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB280AXB
size range: 200-210

value: male

value: child

value: ENCBS886XGU at ENCODE; https://www.encodeproject.org/ENCBS886XGU/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB858FWV)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB858FWV
size range: 200-210

value: cell line

value: acute monocytic leukemia

value: 1 year

value: Jesse Engreitz, Stanford

value: ATCC

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from THP-1 (ENCLB975AVM)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB975AVM
size range: 200-210

value: ENCBS449DOO at ENCODE; https://www.encodeproject.org/ENCBS449DOO/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB587PXU)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB587PXU
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS017YHL at ENCODE; https://www.encodeproject.org/ENCBS017YHL/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB919OAZ)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB919OAZ
size range: 200-210

value: ENCBS920APB at ENCODE; https://www.encodeproject.org/ENCBS920APB/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB835DNY)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB835DNY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB190ACK)

description:
https://www.encodeproject.org/experiments/ENCSR465RNZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR465RNZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB190ACK
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS578HHT at ENCODE; https://www.encodeproject.org/ENCBS578HHT/


title: DNase-seq from spleen (ENCLB208AXN)

description:
https://www.encodeproject.org/experiments/ENCSR247OMJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR247OMJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB208AXN

source_name: Homo sapiens female adult (59 years) spleen tissue

value: spleen

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS790ATP at ENCODE; https://www.encodeproject.org/ENCBS790ATP/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB864ZWP)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB864ZWP
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jurkat

value: cell line

value: male

value: acute T cell leukemia

value: child

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS317YLV at ENCODE; https://www.encodeproject.org/ENCBS317YLV/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB825IXJ)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB825IXJ
size range: 200-210

value: 14 year


title: Flow-FISH CRISPR screen from Jurkat (ENCLB280PBF)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB280PBF
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB006KZH)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB006KZH
size range: 200-210

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS886XGU at ENCODE; https://www.encodeproject.org/ENCBS886XGU/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB096EZC)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB096EZC
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB095FUL)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB095FUL
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB946GQI)

description:
https://www.encodeproject.org/experiments/ENCSR463WYO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR463WYO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-10
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB946GQI
size range: 200-210

value: acute monocytic leukemia

value: 1 year

value: treatment_term_name:Lipopolysaccharide from Escherichia coli K12; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS920APB at ENCODE; https://www.encodeproject.org/ENCBS920APB/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB528DLJ)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB528DLJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB515HSS)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB515HSS
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS888AXE at ENCODE; https://www.encodeproject.org/ENCBS888AXE/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB255NMD)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB255NMD
size range: 200-210

value: Jurkat

value: cell line

value: male

value: acute T cell leukemia

value: ENCBS017YHL at ENCODE; https://www.encodeproject.org/ENCBS017YHL/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB243DMJ)

description:
https://www.encodeproject.org/experiments/ENCSR246ZMP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR246ZMP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB243DMJ
size range: 200-210

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from Jurkat (ENCLB545GMT)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB545GMT
size range: 200-210

value: ENCBS146BOI at ENCODE; https://www.encodeproject.org/ENCBS146BOI/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB215CYO)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB215CYO
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB196KPX)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB196KPX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB478ISS)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB478ISS
size range: 200-210

value: ENCBS700TLT at ENCODE; https://www.encodeproject.org/ENCBS700TLT/


title: Flow-FISH CRISPR screen from K562 (ENCLB080YEM)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB080YEM
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB457OHR)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB457OHR
size range: 200-210


title: DNase-seq from suppressor macrophage (ENCLB613SAO)

description:
https://www.encodeproject.org/experiments/ENCSR458QPA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR458QPA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB613SAO

source_name: Homo sapiens female adult (56 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 56 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS193VWA at ENCODE; https://www.encodeproject.org/ENCBS193VWA/


title: Flow-FISH CRISPR screen from K562 (ENCLB195RPG)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB195RPG
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS888AXE at ENCODE; https://www.encodeproject.org/ENCBS888AXE/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB006GMP)

description:
https://www.encodeproject.org/experiments/ENCSR245TFD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR245TFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB006GMP
size range: 200-210

value: Jurkat

value: cell line

value: male

value: acute T cell leukemia

value: child


title: Flow-FISH CRISPR screen from K562 (ENCLB949LEK)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB949LEK
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS700TLT at ENCODE; https://www.encodeproject.org/ENCBS700TLT/


title: Flow-FISH CRISPR screen from K562 (ENCLB554WLY)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB554WLY
size range: 200-210

value: ENCBS554YFL at ENCODE; https://www.encodeproject.org/ENCBS554YFL/


title: Flow-FISH CRISPR screen from K562 (ENCLB845JGS)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB845JGS
size range: 200-210

value: ENCBS558ZOE at ENCODE; https://www.encodeproject.org/ENCBS558ZOE/


title: proliferation CRISPR screen from K562 (ENCLB495CYG)

description:
https://www.encodeproject.org/experiments/ENCSR453GEJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR453GEJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB495CYG

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRa (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS624RWT at ENCODE; https://www.encodeproject.org/ENCBS624RWT/


title: Flow-FISH CRISPR screen from K562 (ENCLB597JLP)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB597JLP
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB073XMW)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB073XMW
size range: 200-210

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB772ZJK)

description:
https://www.encodeproject.org/experiments/ENCSR244LQC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR244LQC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB772ZJK
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB298GUP)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB298GUP
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB370PRR)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB370PRR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB871ZZM)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB871ZZM
size range: 200-210

value: ENCBS056VXF at ENCODE; https://www.encodeproject.org/ENCBS056VXF/


title: proliferation CRISPR screen from K562 (ENCLB240UBQ)

description:
https://www.encodeproject.org/experiments/ENCSR453GEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR453GEJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB240UBQ

value: ENCBS094YWO at ENCODE; https://www.encodeproject.org/ENCBS094YWO/


title: Flow-FISH CRISPR screen from K562 (ENCLB840SUI)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB840SUI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB388XHQ)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB388XHQ
size range: 200-210

value: ENCBS110XMN at ENCODE; https://www.encodeproject.org/ENCBS110XMN/


title: Flow-FISH CRISPR screen from K562 (ENCLB258HHC)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB258HHC
size range: 200-210

value: Jesse Engreitz, Stanford


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB340MDJ)

description:
https://www.encodeproject.org/experiments/ENCSR455ERT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR455ERT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB340MDJ

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS261HWA at ENCODE; https://www.encodeproject.org/ENCBS261HWA/


title: Flow-FISH CRISPR screen from K562 (ENCLB617MMQ)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB617MMQ
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB751LEJ)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB751LEJ
size range: 200-210

value: ENCBS554YFL at ENCODE; https://www.encodeproject.org/ENCBS554YFL/


title: Flow-FISH CRISPR screen from K562 (ENCLB391NVS)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB391NVS
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB278KFR)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB278KFR
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB158TZX)

description:
https://www.encodeproject.org/experiments/ENCSR455XYP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR455XYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB158TZX
size range: 200-210

value: adult

value: ENCBS558ZOE at ENCODE; https://www.encodeproject.org/ENCBS558ZOE/


title: Flow-FISH CRISPR screen from K562 (ENCLB392OEY)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB392OEY
size range: 200-210

value: cell line

value: 53 year


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB447HRG)

description:
https://www.encodeproject.org/experiments/ENCSR239DGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR239DGJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB447HRG

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: ENCBS899KGC at ENCODE; https://www.encodeproject.org/ENCBS899KGC/


title: Flow-FISH CRISPR screen from K562 (ENCLB465EMD)

description:
https://www.encodeproject.org/experiments/ENCSR239YFD/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR239YFD
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB465EMD
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ENCBS110XMN at ENCODE; https://www.encodeproject.org/ENCBS110XMN/


title: Flow-FISH CRISPR screen from K562 (ENCLB987QUF)

description:
https://www.encodeproject.org/experiments/ENCSR238DCF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR238DCF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB987QUF
size range: 200-210

value: ENCBS172PPI at ENCODE; https://www.encodeproject.org/ENCBS172PPI/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB367VKO)

description:
https://www.encodeproject.org/experiments/ENCSR239DGJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR239DGJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB367VKO

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS794JTA at ENCODE; https://www.encodeproject.org/ENCBS794JTA/


title: DNase-seq from HUDEP-2 (ENCLB090UOM)

description:
https://www.encodeproject.org/experiments/ENCSR238WNT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR238WNT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB090UOM

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS752WBJ at ENCODE; https://www.encodeproject.org/ENCBS752WBJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB907BNL)

description:
https://www.encodeproject.org/experiments/ENCSR238DCF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR238DCF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB907BNL
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ATCC


title: DNase-seq from naive thymus-derived CD8-positive, alpha-beta T cell (ENCLB501MUN)

description:
https://www.encodeproject.org/experiments/ENCSR450JEN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR450JEN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB501MUN

source_name: Homo sapiens male adult (24 years) naive thymus-derived CD8-positive, alpha-beta T primary cell

value: male

value: 24 year

value: ENCBS421GRA at ENCODE; https://www.encodeproject.org/ENCBS421GRA/