title: DNase-seq from HUDEP-2 (ENCLB592GBO)

description:
https://www.encodeproject.org/experiments/ENCSR822YCA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR822YCA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB592GBO

source_name: Homo sapiens HUDEP-2 cell line

value: cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS200LTU at ENCODE; https://www.encodeproject.org/ENCBS200LTU/


title: Flow-FISH CRISPR screen from K562 (ENCLB042THO)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR822DCN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR822DCN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB042THO
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS026WVY at ENCODE; https://www.encodeproject.org/ENCBS026WVY/


title: Flow-FISH CRISPR screen from K562 (ENCLB569NMQ)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB569NMQ
size range: 200-210

value: ENCBS941AHY at ENCODE; https://www.encodeproject.org/ENCBS941AHY/


title: Flow-FISH CRISPR screen from K562 (ENCLB920SRG)

description:
https://www.encodeproject.org/experiments/ENCSR822DCN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR822DCN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB920SRG
size range: 200-210


title: DNase-seq from inflammatory macrophage (ENCLB039FNO)

description:
https://www.encodeproject.org/experiments/ENCSR229PJJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR229PJJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB039FNO

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 1 hour

value: inflammatory macrophage

value: primary cell

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

tag: treatments

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:1; duration_units:hour;

value: ENCBS296XBW at ENCODE; https://www.encodeproject.org/ENCBS296XBW/


title: Flow-FISH CRISPR screen from K562 (ENCLB634MMT)

description:
https://www.encodeproject.org/experiments/ENCSR822DCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR822DCN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB634MMT
size range: 200-210

value: cell line


title: DNase-seq from MCF-7 (ENCLB265UPC)

description:
https://www.encodeproject.org/experiments/ENCSR245HBD/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR245HBD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB265UPC
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens MCF-7 cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS715GZC at ENCODE; https://www.encodeproject.org/ENCBS715GZC/


title: DNase-seq from suppressor macrophage (ENCLB678IGF)

description:
https://www.encodeproject.org/experiments/ENCSR240YST/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR240YST
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB678IGF
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 24 hours

value: suppressor macrophage

value: adult

value: 40 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:24; duration_units:hour;

value: ENCBS527CMF at ENCODE; https://www.encodeproject.org/ENCBS527CMF/


title: DNase-seq from CD14-positive monocyte (ENCLB609IZV)

description:
https://www.encodeproject.org/experiments/ENCSR223HHH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR223HHH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB609IZV
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 21 year

value: ENCBS872KZV at ENCODE; https://www.encodeproject.org/ENCBS872KZV/


title: DNase-seq from K562 (ENCLB135IXK)

description:
https://www.encodeproject.org/experiments/ENCSR222XVJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR222XVJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB135IXK
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS812QSG at ENCODE; https://www.encodeproject.org/ENCBS812QSG/


title: Flow-FISH CRISPR screen from K562 (ENCLB200USI)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB200USI
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: ENCBS367KDT at ENCODE; https://www.encodeproject.org/ENCBS367KDT/


title: DNase-seq from T47D (ENCLB671FJV)

description:
https://www.encodeproject.org/experiments/ENCSR426GYH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR426GYH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB671FJV
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 1 uM bisphenol a for 2 hours

value: mammary ductal carcinoma

value: adult

value: 54 year

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS701YOQ at ENCODE; https://www.encodeproject.org/ENCBS701YOQ/


title: DNase-seq from T47D (ENCLB283CZG)

description:
https://www.encodeproject.org/experiments/ENCSR215FXP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR215FXP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB283CZG
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 50 nM bisphenol a for 120 hours

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS498NWR at ENCODE; https://www.encodeproject.org/ENCBS498NWR/


title: Flow-FISH CRISPR screen from K562 (ENCLB678GGN)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB678GGN
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB500UZR)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB500UZR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB762OHN)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB762OHN
size range: 200-210

value: ENCBS780FKM at ENCODE; https://www.encodeproject.org/ENCBS780FKM/


title: DNase-seq from NCI-H128 (ENCLB442BQG)

description:
https://www.encodeproject.org/experiments/ENCSR444ZYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR444ZYN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB442BQG
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens NCI-H128 cell line

value: male

value: 60 year

value: ENCBS094MMN at ENCODE; https://www.encodeproject.org/ENCBS094MMN/


title: Flow-FISH CRISPR screen from K562 (ENCLB366PAP)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB366PAP
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS941AHY at ENCODE; https://www.encodeproject.org/ENCBS941AHY/


title: Flow-FISH CRISPR screen from K562 (ENCLB100CZM)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB100CZM
size range: 200-210

value: cell line

value: female

value: Jesse Engreitz, Stanford

value: ENCBS771WUK at ENCODE; https://www.encodeproject.org/ENCBS771WUK/


title: DNase-seq from NCI-H226 (ENCLB119XDS)

description:
https://www.encodeproject.org/experiments/ENCSR433PEV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR433PEV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB119XDS

source_name: Homo sapiens NCI-H226 cell line

value: squamous cell carcinoma; mesothelioma

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS305JID at ENCODE; https://www.encodeproject.org/ENCBS305JID/


title: DNase-seq from NCI-H446 (ENCLB433WKP)

description:
https://www.encodeproject.org/experiments/ENCSR403VFN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR403VFN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB433WKP

source_name: Homo sapiens NCI-H446 cell line

value: 61 year

value: ENCBS311HDM at ENCODE; https://www.encodeproject.org/ENCBS311HDM/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB023DPN)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB023DPN
size range: 200-210

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: ENCBS507VRG at ENCODE; https://www.encodeproject.org/ENCBS507VRG/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB021ITV)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB021ITV
size range: 200-210

value: ENCBS810HZN at ENCODE; https://www.encodeproject.org/ENCBS810HZN/


title: Flow-FISH CRISPR screen from K562 (ENCLB664LTV)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB664LTV
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB108DCL)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB108DCL
size range: 200-210

value: 53 year

value: ENCBS367KDT at ENCODE; https://www.encodeproject.org/ENCBS367KDT/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB800PAX)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB800PAX
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB329CUZ)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB329CUZ
size range: 200-210

value: cell line

value: ENCBS780FKM at ENCODE; https://www.encodeproject.org/ENCBS780FKM/


title: Flow-FISH CRISPR screen from K562 (ENCLB111DSP)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB111DSP
size range: 200-210

value: female

value: Jesse Engreitz, Stanford

value: ENCBS941AHY at ENCODE; https://www.encodeproject.org/ENCBS941AHY/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB555HEB)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB555HEB
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB510DZX)

description:
https://www.encodeproject.org/experiments/ENCSR821VOB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR821VOB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB510DZX
size range: 200-210

value: ENCBS771WUK at ENCODE; https://www.encodeproject.org/ENCBS771WUK/


title: DNase-seq from NCI-H1694 (ENCLB690DNW)

description:
https://www.encodeproject.org/experiments/ENCSR208GRN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208GRN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB690DNW

source_name: Homo sapiens NCI-H1694 cell line

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS754DJR at ENCODE; https://www.encodeproject.org/ENCBS754DJR/


title: DNase-seq from NCI-H526 (ENCLB848XLB)

description:
https://www.encodeproject.org/experiments/ENCSR209QRA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR209QRA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB848XLB

source_name: Homo sapiens NCI-H526 cell line

value: 55 year

value: ENCBS642HSZ at ENCODE; https://www.encodeproject.org/ENCBS642HSZ/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB979YWA)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB979YWA
size range: 200-210

value: unknown

value: ENCBS810HZN at ENCODE; https://www.encodeproject.org/ENCBS810HZN/


title: DNase-seq from SW 1271 (ENCLB578HTE)

description:
https://www.encodeproject.org/experiments/ENCSR987UVP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR987UVP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB578HTE

source_name: Homo sapiens SW 1271 cell line

value: 69 year

value: ENCBS852ZDD at ENCODE; https://www.encodeproject.org/ENCBS852ZDD/


title: DNase-seq from NCI-H446 (ENCLB617LIV)

description:
https://www.encodeproject.org/experiments/ENCSR403VFN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR403VFN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB617LIV

value: 61 year

value: ATCC

value: ENCBS311HDM at ENCODE; https://www.encodeproject.org/ENCBS311HDM/


title: DNase-seq from NCI-H1694 (ENCLB517UXD)

description:
https://www.encodeproject.org/experiments/ENCSR208GRN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR208GRN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB517UXD
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: cell line

value: ENCBS516NZB at ENCODE; https://www.encodeproject.org/ENCBS516NZB/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB854JHP)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB854JHP
size range: 200-210

value: female

value: Jesse Engreitz, Stanford

value: ENCBS507VRG at ENCODE; https://www.encodeproject.org/ENCBS507VRG/


title: DNase-seq from inflammatory macrophage (ENCLB977RLO)

description:
https://www.encodeproject.org/experiments/ENCSR429YWF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR429YWF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB977RLO

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: male

value: adult

value: 24 year

value: Shelly Heimfeld

value: ENCBS557MVY at ENCODE; https://www.encodeproject.org/ENCBS557MVY/


title: DNase-seq from NCI-H446 (ENCLB315QWM)

description:
https://www.encodeproject.org/experiments/ENCSR403VFN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR403VFN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB315QWM

value: John Stamatoyannopoulos, UW

value: ENCBS042LJC at ENCODE; https://www.encodeproject.org/ENCBS042LJC/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB069ADW)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB069ADW
size range: 200-210

value: unknown


title: DNase-seq from CD14-positive monocyte (ENCLB850LIX)

description:
https://www.encodeproject.org/experiments/ENCSR974QPL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR974QPL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB850LIX

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 40 year

value: ENCBS566KAT at ENCODE; https://www.encodeproject.org/ENCBS566KAT/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB415VOW)

description:
https://www.encodeproject.org/experiments/ENCSR820ANU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR820ANU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB415VOW
size range: 200-210

value: cell line

value: ATCC

value: ENCBS810HZN at ENCODE; https://www.encodeproject.org/ENCBS810HZN/


title: DNase-seq from NCI-H446 (ENCLB320ZSY)

description:
https://www.encodeproject.org/experiments/ENCSR403VFN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR403VFN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB320ZSY

value: 61 year


title: DNase-seq from SW 1271 (ENCLB130ZJH)

description:
https://www.encodeproject.org/experiments/ENCSR987UVP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR987UVP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB130ZJH

value: 69 year

value: ENCBS719GCG at ENCODE; https://www.encodeproject.org/ENCBS719GCG/


title: DNase-seq from T47D (ENCLB290SFG)

description:
https://www.encodeproject.org/experiments/ENCSR958TJC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR958TJC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB290SFG
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 100 nM genistein for 504 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS239RJQ at ENCODE; https://www.encodeproject.org/ENCBS239RJQ/


title: DNase-seq from spleen (ENCLB010XSA)

description:
https://www.encodeproject.org/experiments/ENCSR820ICM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR820ICM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB010XSA

source_name: Homo sapiens female adult (41 years) spleen tissue

value: spleen

value: tissue

value: DM:no; HTN:no; CAD:no

value: adult

value: 41 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS750YNT at ENCODE; https://www.encodeproject.org/ENCBS750YNT/


title: DNase-seq from inflammatory macrophage (ENCLB032HMZ)

description:
https://www.encodeproject.org/experiments/ENCSR970HKH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR970HKH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB032HMZ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: inflammatory macrophage

value: primary cell

value: male

value: 24 year

value: Shelly Heimfeld

value: ENCBS306SYX at ENCODE; https://www.encodeproject.org/ENCBS306SYX/


title: Flow-FISH CRISPR screen from K562 (ENCLB677RSB)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB677RSB
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS241WGO at ENCODE; https://www.encodeproject.org/ENCBS241WGO/


title: Control CRISPR screen from K562 (ENCLB319EJC)

description:
https://www.encodeproject.org/experiments/ENCSR819UNC/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR819UNC
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB319EJC
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: adult

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS231CYL at ENCODE; https://www.encodeproject.org/ENCBS231CYL/


title: DNase-seq from inflammatory macrophage (ENCLB164DLG)

description:
https://www.encodeproject.org/experiments/ENCSR989RNC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR989RNC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB164DLG
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

value: inflammatory macrophage

value: John Stamatoyannopoulos, UW

value: ENCBS191UDR at ENCODE; https://www.encodeproject.org/ENCBS191UDR/


title: Flow-FISH CRISPR screen from K562 (ENCLB787RDD)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB787RDD
size range: 200-210

value: ENCBS816RPV at ENCODE; https://www.encodeproject.org/ENCBS816RPV/


title: DNase-seq from SHP77 (ENCLB507NYD)

description:
https://www.encodeproject.org/experiments/ENCSR942TYR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR942TYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB507NYD

source_name: Homo sapiens SHP77 cell line

value: male

value: 54 year

value: ENCBS809ATJ at ENCODE; https://www.encodeproject.org/ENCBS809ATJ/


title: Control CRISPR screen from K562 (ENCLB895WMG)

description:
https://www.encodeproject.org/experiments/ENCSR819UNC/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR819UNC
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB895WMG
size range: 710-720

value: cell line

value: female

value: ENCBS098ECK at ENCODE; https://www.encodeproject.org/ENCBS098ECK/


title: DNase-seq from T47D (ENCLB434DCZ)

description:
https://www.encodeproject.org/experiments/ENCSR937PIT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR937PIT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-01
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB434DCZ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 10 nM 17 beta estradiol for 2 hours

value: mammary ductal carcinoma

value: treatment_term_id:CHEBI:16469; treatment_term_name:17 beta estradiol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS993VJC at ENCODE; https://www.encodeproject.org/ENCBS993VJC/


title: DNase-seq from CD14-positive monocyte (ENCLB493GDC)

description:
https://www.encodeproject.org/experiments/ENCSR916HXX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR916HXX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB493GDC

value: CD14-positive monocyte

value: primary cell

value: adult

value: 40 year

value: Shelly Heimfeld

value: ENCBS469KGS at ENCODE; https://www.encodeproject.org/ENCBS469KGS/


title: Flow-FISH CRISPR screen from K562 (ENCLB323MUA)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB323MUA
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS241WGO at ENCODE; https://www.encodeproject.org/ENCBS241WGO/


title: DNase-seq from T47D (ENCLB796PPR)

description:
https://www.encodeproject.org/experiments/ENCSR952MLE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR952MLE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB796PPR
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 4 nM bisphenol a for 2 hours

value: cell line

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS706HSN at ENCODE; https://www.encodeproject.org/ENCBS706HSN/


title: Flow-FISH CRISPR screen from K562 (ENCLB011FVQ)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB011FVQ
size range: 200-210

value: female

value: ENCBS427DBB at ENCODE; https://www.encodeproject.org/ENCBS427DBB/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB063ZCI)

description:
https://www.encodeproject.org/experiments/ENCSR818QNO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR818QNO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB063ZCI

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: ENCBS887KKR at ENCODE; https://www.encodeproject.org/ENCBS887KKR/


title: DNase-seq from K562 (ENCLB691LKS)

description:
https://www.encodeproject.org/experiments/ENCSR952FRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR952FRY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB691LKS

source_name: Homo sapiens K562 cell line

value: adult

value: ENCBS162HQI at ENCODE; https://www.encodeproject.org/ENCBS162HQI/


title: Flow-FISH CRISPR screen from K562 (ENCLB023XLN)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB023XLN
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS913GVO at ENCODE; https://www.encodeproject.org/ENCBS913GVO/


title: DNase-seq from SHP77 (ENCLB167WJI)

description:
https://www.encodeproject.org/experiments/ENCSR942TYR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR942TYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB167WJI

value: male

value: ATCC

value: ENCBS746ONV at ENCODE; https://www.encodeproject.org/ENCBS746ONV/


title: DNase-seq from T47D (ENCLB811RUT)

description:
https://www.encodeproject.org/experiments/ENCSR900NYS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR900NYS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB811RUT
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 50 nM bisphenol a for 2 hours

value: cell line

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: ENCBS155WQC at ENCODE; https://www.encodeproject.org/ENCBS155WQC/


title: Flow-FISH CRISPR screen from K562 (ENCLB485NUY)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB485NUY
size range: 200-210

value: female

value: Jesse Engreitz, Stanford


title: DNase-seq from CD14-positive monocyte (ENCLB333UEO)

description:
https://www.encodeproject.org/experiments/ENCSR943WGU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943WGU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB333UEO

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: ENCBS448SGV at ENCODE; https://www.encodeproject.org/ENCBS448SGV/


title: Flow-FISH CRISPR screen from K562 (ENCLB145DSS)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB145DSS
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS816RPV at ENCODE; https://www.encodeproject.org/ENCBS816RPV/


title: DNase-seq from NCI-H889 (ENCLB474WNX)

description:
https://www.encodeproject.org/experiments/ENCSR912JQY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR912JQY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB474WNX
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H889 cell line

value: 69 year

value: ATCC

value: ENCBS278XXY at ENCODE; https://www.encodeproject.org/ENCBS278XXY/


title: Flow-FISH CRISPR screen from K562 (ENCLB347HAF)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB347HAF
size range: 200-210

value: cell line

value: ENCBS913GVO at ENCODE; https://www.encodeproject.org/ENCBS913GVO/


title: Flow-FISH CRISPR screen from K562 (ENCLB982JLQ)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB982JLQ
size range: 200-210

value: ENCBS427DBB at ENCODE; https://www.encodeproject.org/ENCBS427DBB/


title: DNase-seq from K562 (ENCLB445RRB)

description:
https://www.encodeproject.org/experiments/ENCSR880PSE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR880PSE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB445RRB

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS022OSI at ENCODE; https://www.encodeproject.org/ENCBS022OSI/


title: Flow-FISH CRISPR screen from K562 (ENCLB766OSC)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB766OSC
size range: 200-210

value: Jesse Engreitz, Stanford


title: DNase-seq from suppressor macrophage (ENCLB294BJZ)

description:
https://www.encodeproject.org/experiments/ENCSR888CYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR888CYN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB294BJZ

source_name: Homo sapiens female adult (56 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 56 year

value: ENCBS280XXU at ENCODE; https://www.encodeproject.org/ENCBS280XXU/


title: Flow-FISH CRISPR screen from K562 (ENCLB469KRL)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB469KRL
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: DNase-seq from T47D (ENCLB922PMH)

description:
https://www.encodeproject.org/experiments/ENCSR865FBO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR865FBO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB922PMH
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 10 nM 17 beta estradiol for 120 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:16469; treatment_term_name:17 beta estradiol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS887TWK at ENCODE; https://www.encodeproject.org/ENCBS887TWK/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB913PON)

description:
https://www.encodeproject.org/experiments/ENCSR817DXI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR817DXI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB913PON

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS867QTJ at ENCODE; https://www.encodeproject.org/ENCBS867QTJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB481HFO)

description:
https://www.encodeproject.org/experiments/ENCSR818BYM/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR818BYM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB481HFO
size range: 200-210

value: cell line

value: female

value: 53 year

value: ATCC

value: ENCBS427DBB at ENCODE; https://www.encodeproject.org/ENCBS427DBB/


title: DNase-seq from DMS153 (ENCLB339VIJ)

description:
https://www.encodeproject.org/experiments/ENCSR856KIP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR856KIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB339VIJ

source_name: Homo sapiens DMS153 cell line

value: 44 year

value: John Stamatoyannopoulos, UW

value: ENCBS653FZE at ENCODE; https://www.encodeproject.org/ENCBS653FZE/


title: proliferation CRISPR screen from K562 (ENCLB283RQQ)

description:
https://www.encodeproject.org/experiments/ENCSR816GWF/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR816GWF
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB283RQQ

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR dCas (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: chronic myelogenous leukemia (CML)

value: adult

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS010RKU at ENCODE; https://www.encodeproject.org/ENCBS010RKU/


title: DNase-seq from NCI-H2141 (ENCLB116BYV)

description:
https://www.encodeproject.org/experiments/ENCSR863REG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR863REG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB116BYV
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2141 cell line

value: male

value: 58 year

value: ENCBS817WLV at ENCODE; https://www.encodeproject.org/ENCBS817WLV/


title: DNase-seq from pancreas (ENCLB632BCN)

description:
https://www.encodeproject.org/experiments/ENCSR816IUS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR816IUS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB632BCN

source_name: Homo sapiens male adult (26 years) pancreas tissue, preserved by flash-freezing

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no

value: 26 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS028WAL at ENCODE; https://www.encodeproject.org/ENCBS028WAL/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: DNase-seq from DMS79 (ENCLB582ORE)

description:
https://www.encodeproject.org/experiments/ENCSR813RYR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR813RYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB582ORE

source_name: Homo sapiens DMS79 cell line

value: cell line

value: 65 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS687AAD at ENCODE; https://www.encodeproject.org/ENCBS687AAD/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB745SPB)

description:
https://www.encodeproject.org/experiments/ENCSR817DXI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR817DXI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB745SPB

value: primary cell

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS332FWZ at ENCODE; https://www.encodeproject.org/ENCBS332FWZ/


title: proliferation CRISPR screen from K562 (ENCLB078YVF)

description:
https://www.encodeproject.org/experiments/ENCSR816GWF/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR816GWF
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB078YVF

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS214TWR at ENCODE; https://www.encodeproject.org/ENCBS214TWR/


title: DNase-seq from DMS153 (ENCLB737XVI)

description:
https://www.encodeproject.org/experiments/ENCSR856KIP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR856KIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB737XVI

value: cell line

value: male

value: 44 year

value: ENCBS467YYC at ENCODE; https://www.encodeproject.org/ENCBS467YYC/


title: DNase-seq from DMS153 (ENCLB483YXA)

description:
https://www.encodeproject.org/experiments/ENCSR856KIP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR856KIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB483YXA
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS754AMT at ENCODE; https://www.encodeproject.org/ENCBS754AMT/


title: DNase-seq from DMS79 (ENCLB856YGU)

description:
https://www.encodeproject.org/experiments/ENCSR813RYR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR813RYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB856YGU

value: adult

value: 65 year

value: ENCBS940RWU at ENCODE; https://www.encodeproject.org/ENCBS940RWU/


title: DNase-seq from K562 (ENCLB123JUY)

description:
https://www.encodeproject.org/experiments/ENCSR828ZUY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR828ZUY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123JUY
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

value: female

value: ENCBS483RLE at ENCODE; https://www.encodeproject.org/ENCBS483RLE/


title: DNase-seq from K562 (ENCLB242FTA)

description:
https://www.encodeproject.org/experiments/ENCSR892UMF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR892UMF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB242FTA
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS527TPC at ENCODE; https://www.encodeproject.org/ENCBS527TPC/


title: DNase-seq from pancreas (ENCLB429HTM)

description:
https://www.encodeproject.org/experiments/ENCSR816IUS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR816IUS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB429HTM

value: pancreas

value: tissue

value: DM:no; HTN:no; CAD:no

value: 26 year

value: Michael Snyder, Stanford

value: Yiing Lin, MD, PhD

value: ENCBS028WAL at ENCODE; https://www.encodeproject.org/ENCBS028WAL/

value: Derived from ENCODE donor ENCDO221IPH; https://www.encodeproject.org/ENCDO221IPH/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB083JGL)

description:
https://www.encodeproject.org/experiments/ENCSR811DXO/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR811DXO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083JGL

source_name: Homo sapiens female adult (33 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS064YOS at ENCODE; https://www.encodeproject.org/ENCBS064YOS/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB597YRX)

description:
https://www.encodeproject.org/experiments/ENCSR814VJU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR814VJU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB597YRX

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: adult

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS890OHR at ENCODE; https://www.encodeproject.org/ENCBS890OHR/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB076VEK)

description:
https://www.encodeproject.org/experiments/ENCSR814VJU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR814VJU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB076VEK

value: ENCBS985PEM at ENCODE; https://www.encodeproject.org/ENCBS985PEM/


title: DNase-seq from DMS79 (ENCLB102ORB)

description:
https://www.encodeproject.org/experiments/ENCSR813RYR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR813RYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB102ORB

value: cell line

value: 65 year

value: ATCC

value: ENCBS794EOK at ENCODE; https://www.encodeproject.org/ENCBS794EOK/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB047DBX)

description:
https://www.encodeproject.org/experiments/ENCSR811DXO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR811DXO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB047DBX

value: female

value: ENCBS196NQF at ENCODE; https://www.encodeproject.org/ENCBS196NQF/


title: DNase-seq from muscle of leg (ENCLB131WTV)

description:
https://www.encodeproject.org/experiments/ENCSR760OPF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR760OPF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB131WTV

source_name: Homo sapiens embryo (101 days) muscle of leg tissue

value: muscle of leg

value: tissue

value: not collected

value: embryonic

value: 101 day

value: Ian Glass

value: ENCBS632SOA at ENCODE; https://www.encodeproject.org/ENCBS632SOA/


title: DNase-seq from K562 (ENCLB518BRN)

description:
https://www.encodeproject.org/experiments/ENCSR845BLM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR845BLM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB518BRN
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: John Stamatoyannopoulos, UW

value: ENCBS934EPV at ENCODE; https://www.encodeproject.org/ENCBS934EPV/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB603OLN)

description:
https://www.encodeproject.org/experiments/ENCSR811DXO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR811DXO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB603OLN

value: CD8-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: AllCells

value: ENCBS105WEN at ENCODE; https://www.encodeproject.org/ENCBS105WEN/


title: DNase-seq from DMS79 (ENCLB419DBB)

description:
https://www.encodeproject.org/experiments/ENCSR813RYR/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR813RYR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB419DBB
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: male

value: 65 year

value: ATCC

value: ENCBS884YET at ENCODE; https://www.encodeproject.org/ENCBS884YET/


title: DNase-seq from suppressor macrophage (ENCLB279ACS)

description:
https://www.encodeproject.org/experiments/ENCSR756KBW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR756KBW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB279ACS

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell

value: suppressor macrophage

value: 24 year

value: Shelly Heimfeld

value: ENCBS484ZJJ at ENCODE; https://www.encodeproject.org/ENCBS484ZJJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB140ADB)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB140ADB
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS632EIN at ENCODE; https://www.encodeproject.org/ENCBS632EIN/


title: DNase-seq from NCI-H209 (ENCLB686VKI)

description:
https://www.encodeproject.org/experiments/ENCSR777DJH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR777DJH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB686VKI
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H209 cell line

value: 55 year

value: John Stamatoyannopoulos, UW

value: ENCBS316VCC at ENCODE; https://www.encodeproject.org/ENCBS316VCC/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB552YAI)

description:
https://www.encodeproject.org/experiments/ENCSR811BXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR811BXU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB552YAI

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: primary cell

value: male

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS891UPR at ENCODE; https://www.encodeproject.org/ENCBS891UPR/


title: Flow-FISH CRISPR screen from K562 (ENCLB725URH)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB725URH
size range: 200-210

value: cell line

value: ATCC


title: DNase-seq from inflammatory macrophage (ENCLB394XHH)

description:
https://www.encodeproject.org/experiments/ENCSR756ZVZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR756ZVZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB394XHH
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: 40 year

value: Shelly Heimfeld

value: ENCBS642ZIL at ENCODE; https://www.encodeproject.org/ENCBS642ZIL/


title: Flow-FISH CRISPR screen from K562 (ENCLB571GWB)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB571GWB
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS836IVU at ENCODE; https://www.encodeproject.org/ENCBS836IVU/


title: DNase-seq from NCI-H1436 (ENCLB397NDW)

description:
https://www.encodeproject.org/experiments/ENCSR750RKQ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR750RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB397NDW
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H1436 cell line

value: male

value: 39 year

value: John Stamatoyannopoulos, UW

value: ENCBS691DPA at ENCODE; https://www.encodeproject.org/ENCBS691DPA/


title: Flow-FISH CRISPR screen from K562 (ENCLB872YTJ)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB872YTJ
size range: 200-210


title: DNase-seq from NCI-H1436 (ENCLB083ZQI)

description:
https://www.encodeproject.org/experiments/ENCSR750RKQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR750RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083ZQI

value: ENCBS363URJ at ENCODE; https://www.encodeproject.org/ENCBS363URJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB348RUK)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB348RUK
size range: 200-210

value: cell line

value: ENCBS632EIN at ENCODE; https://www.encodeproject.org/ENCBS632EIN/


title: DNase-seq from NCI-H1930 (ENCLB062XVE)

description:
https://www.encodeproject.org/experiments/ENCSR736SEF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR736SEF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB062XVE

source_name: Homo sapiens NCI-H1930 cell line

value: 41 year

value: ATCC

value: ENCBS043AEJ at ENCODE; https://www.encodeproject.org/ENCBS043AEJ/


title: DNase-seq from inflammatory macrophage (ENCLB728DTL)

description:
https://www.encodeproject.org/experiments/ENCSR735SMO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR735SMO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB728DTL

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: primary cell

value: 24 year

value: Shelly Heimfeld

value: ENCBS663WZF at ENCODE; https://www.encodeproject.org/ENCBS663WZF/


title: Flow-FISH CRISPR screen from K562 (ENCLB933UDK)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB933UDK
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB343YFQ)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB343YFQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB953ZUI)

description:
https://www.encodeproject.org/experiments/ENCSR804IMB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR804IMB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB953ZUI
size range: 200-210

value: ENCBS153MBP at ENCODE; https://www.encodeproject.org/ENCBS153MBP/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB821FGX)

description:
https://www.encodeproject.org/experiments/ENCSR804YMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR804YMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB821FGX

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS943DHK at ENCODE; https://www.encodeproject.org/ENCBS943DHK/


title: DNase-seq from muscle of leg (ENCLB144HYZ)

description:
https://www.encodeproject.org/experiments/ENCSR721NHV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR721NHV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB144HYZ

source_name: Homo sapiens male embryo (113 days) muscle of leg tissue

value: muscle of leg

value: tissue

value: embryonic

value: 113 day

value: Ian Glass

value: ENCBS469OWI at ENCODE; https://www.encodeproject.org/ENCBS469OWI/


title: DNase-seq from common myeloid progenitor, CD34-positive (ENCLB177VMT)

description:
https://www.encodeproject.org/experiments/ENCSR727QHM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR727QHM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB177VMT

source_name: Homo sapiens male adult (25 years) common myeloid progenitor, CD34-positive primary cell

value: primary cell

value: 25 year

value: Shelly Heimfeld

value: ENCBS455UQJ at ENCODE; https://www.encodeproject.org/ENCBS455UQJ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB534TVD)

description:
https://www.encodeproject.org/experiments/ENCSR809QZB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR809QZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB534TVD

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours

value: female

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS572XNL at ENCODE; https://www.encodeproject.org/ENCBS572XNL/


title: DNase-seq from inflammatory macrophage (ENCLB887LGM)

description:
https://www.encodeproject.org/experiments/ENCSR735HHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR735HHO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887LGM

value: inflammatory macrophage

value: male

value: 24 year

value: John Stamatoyannopoulos, UW

value: ENCBS958MZM at ENCODE; https://www.encodeproject.org/ENCBS958MZM/


title: DNase-seq from MCF-7 (ENCLB051SIM)

description:
https://www.encodeproject.org/experiments/ENCSR719NFU/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR719NFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB051SIM
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens MCF-7 cell line

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: ENCBS388KSJ at ENCODE; https://www.encodeproject.org/ENCBS388KSJ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB314OAZ)

description:
https://www.encodeproject.org/experiments/ENCSR809QZB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR809QZB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB314OAZ

value: primary cell

value: AllCells

value: ENCBS383JOZ at ENCODE; https://www.encodeproject.org/ENCBS383JOZ/


title: DNase-seq from NCI-H1930 (ENCLB416DAU)

description:
https://www.encodeproject.org/experiments/ENCSR736SEF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736SEF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB416DAU

value: adult

value: 41 year

value: ENCBS926SMU at ENCODE; https://www.encodeproject.org/ENCBS926SMU/


title: DNase-seq from inflammatory macrophage (ENCLB358UGE)

description:
https://www.encodeproject.org/experiments/ENCSR714TXO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR714TXO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB358UGE

value: 40 year

value: Shelly Heimfeld

value: ENCBS181NWM at ENCODE; https://www.encodeproject.org/ENCBS181NWM/


title: Flow-FISH CRISPR screen from K562 (ENCLB772YNN)

description:
https://www.encodeproject.org/experiments/ENCSR804IMB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR804IMB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB772YNN
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS153MBP at ENCODE; https://www.encodeproject.org/ENCBS153MBP/


title: DNase-seq from NCI-H1436 (ENCLB292BGT)

description:
https://www.encodeproject.org/experiments/ENCSR750RKQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR750RKQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB292BGT

value: cell line

value: male

value: 39 year

value: John Stamatoyannopoulos, UW

value: ENCBS941JEK at ENCODE; https://www.encodeproject.org/ENCBS941JEK/


title: DNase-seq from NCI-H1930 (ENCLB494CFX)

description:
https://www.encodeproject.org/experiments/ENCSR736SEF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR736SEF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB494CFX

value: ATCC

value: ENCBS711LDK at ENCODE; https://www.encodeproject.org/ENCBS711LDK/


title: Flow-FISH CRISPR screen from K562 (ENCLB812ZHZ)

description:
https://www.encodeproject.org/experiments/ENCSR804IMB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR804IMB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB812ZHZ
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB553YNS)

description:
https://www.encodeproject.org/experiments/ENCSR810UNL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR810UNL
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB553YNS
size range: 200-210

value: ENCBS836IVU at ENCODE; https://www.encodeproject.org/ENCBS836IVU/


title: DNase-seq from CD14-positive monocyte (ENCLB077WDO)

description:
https://www.encodeproject.org/experiments/ENCSR700VUT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR700VUT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB077WDO

source_name: Homo sapiens male adult (40 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 40 year

value: ENCBS635XUO at ENCODE; https://www.encodeproject.org/ENCBS635XUO/


title: Flow-FISH CRISPR screen from K562 (ENCLB308SZJ)

description:
https://www.encodeproject.org/experiments/ENCSR804IMB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR804IMB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB308SZJ
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from BJAB (ENCLB056PMX)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB056PMX
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS574AWL at ENCODE; https://www.encodeproject.org/ENCBS574AWL/


title: Flow-FISH CRISPR screen from BJAB (ENCLB734ROI)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB734ROI
size range: 200-210

value: cell line


title: DNase-seq from T47D (ENCLB420NOI)

description:
https://www.encodeproject.org/experiments/ENCSR174YEX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR174YEX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB420NOI
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 1 nM genistein for 504 hours

value: mammary ductal carcinoma

value: 54 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:CHEBI:28088; treatment_term_name:genistein; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS353YKK at ENCODE; https://www.encodeproject.org/ENCBS353YKK/


title: Flow-FISH CRISPR screen from BJAB (ENCLB776EAN)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB776EAN
size range: 200-210

value: ATCC


title: DNase-seq from activated T-cell (ENCLB671EKN)

description:
https://www.encodeproject.org/experiments/ENCSR799RTU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR799RTU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB671EKN

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours

value: activated T-cell

value: primary cell

value: adult

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS680FHI at ENCODE; https://www.encodeproject.org/ENCBS680FHI/


title: Flow-FISH CRISPR screen from BJAB (ENCLB729GUO)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB729GUO
size range: 200-210

value: BJAB

value: female

value: child

value: 5 year


title: DNase-seq from DMS53 (ENCLB214IHL)

description:
https://www.encodeproject.org/experiments/ENCSR185JSG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR185JSG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB214IHL
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens DMS53 cell line

value: cell line

value: male

value: ENCBS494QXJ at ENCODE; https://www.encodeproject.org/ENCBS494QXJ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB639EWC)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB639EWC
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS604WAU at ENCODE; https://www.encodeproject.org/ENCBS604WAU/


title: Flow-FISH CRISPR screen from BJAB (ENCLB349BTX)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB349BTX
size range: 200-210

value: ATCC


title: DNase-seq from CD14-positive monocyte (ENCLB829LHG)

description:
https://www.encodeproject.org/experiments/ENCSR601HWV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR601HWV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB829LHG

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS388IEZ at ENCODE; https://www.encodeproject.org/ENCBS388IEZ/


title: DNase-seq from DMS53 (ENCLB407HTO)

description:
https://www.encodeproject.org/experiments/ENCSR185JSG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR185JSG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB407HTO

value: adult

value: 54 year

value: ENCBS778FIA at ENCODE; https://www.encodeproject.org/ENCBS778FIA/


title: DNase-seq from T47D (ENCLB548JPZ)

description:
https://www.encodeproject.org/experiments/ENCSR681OAY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR681OAY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB548JPZ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 uM bisphenol a for 120 hours

value: female

value: mammary ductal carcinoma

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS389CAD at ENCODE; https://www.encodeproject.org/ENCBS389CAD/


title: DNase-seq from MCF-7 (ENCLB040DBQ)

description:
https://www.encodeproject.org/experiments/ENCSR150OSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR150OSO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040DBQ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS371GJR at ENCODE; https://www.encodeproject.org/ENCBS371GJR/


title: Flow-FISH CRISPR screen from BJAB (ENCLB213CPF)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB213CPF
size range: 200-210

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS604WAU at ENCODE; https://www.encodeproject.org/ENCBS604WAU/


title: DNase-seq from NCI-H2227 (ENCLB740QMR)

description:
https://www.encodeproject.org/experiments/ENCSR113NAA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR113NAA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB740QMR
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens NCI-H2227 cell line

value: male

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS430JED at ENCODE; https://www.encodeproject.org/ENCBS430JED/


title: DNase-seq from CD14-positive monocyte (ENCLB694IQZ)

description:
https://www.encodeproject.org/experiments/ENCSR700VUT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR700VUT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB694IQZ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: CD14-positive monocyte

value: primary cell

value: 40 year

value: Shelly Heimfeld

value: ENCBS768XXR at ENCODE; https://www.encodeproject.org/ENCBS768XXR/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB518NGK)

description:
https://www.encodeproject.org/experiments/ENCSR794YNM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR794YNM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB518NGK

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS764NQQ at ENCODE; https://www.encodeproject.org/ENCBS764NQQ/


title: DNase-seq from COLO668 (ENCLB252CFR)

description:
https://www.encodeproject.org/experiments/ENCSR660IDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR660IDG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB252CFR
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens COLO668 cell line

value: cell line

value: female

value: 47 year

value: ECACC

value: ENCBS668STX at ENCODE; https://www.encodeproject.org/ENCBS668STX/


title: DNase-seq from DMS53 (ENCLB025LAY)

description:
https://www.encodeproject.org/experiments/ENCSR185JSG/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR185JSG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB025LAY

value: male

value: adult

value: 54 year

value: ATCC

value: ENCBS911CHR at ENCODE; https://www.encodeproject.org/ENCBS911CHR/


title: DNase-seq from CD14-positive monocyte (ENCLB688MIK)

description:
https://www.encodeproject.org/experiments/ENCSR103ZWK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR103ZWK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB688MIK

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: John Stamatoyannopoulos, UW

value: ENCBS100PBM at ENCODE; https://www.encodeproject.org/ENCBS100PBM/


title: DNase-seq from T47D (ENCLB163KYF)

description:
https://www.encodeproject.org/experiments/ENCSR118GIG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR118GIG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB163KYF
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 2 hours

value: mammary ductal carcinoma

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS076PYS at ENCODE; https://www.encodeproject.org/ENCBS076PYS/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB036ZUP)

description:
https://www.encodeproject.org/experiments/ENCSR795FXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR795FXU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB036ZUP

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS243MUQ at ENCODE; https://www.encodeproject.org/ENCBS243MUQ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB835EFS)

description:
https://www.encodeproject.org/experiments/ENCSR799KTT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR799KTT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB835EFS
size range: 200-210

value: BJAB

value: cell line

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: ENCBS604WAU at ENCODE; https://www.encodeproject.org/ENCBS604WAU/


title: DNase-seq from T-helper 17 cell (ENCLB779RDN)

description:
https://www.encodeproject.org/experiments/ENCSR793UEF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR793UEF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB779RDN

source_name: Homo sapiens male adult (24 years) T-helper 17 primary cell

value: T-helper 17 cell

value: primary cell

value: male

value: adult

value: 24 year

value: ENCBS995ULX at ENCODE; https://www.encodeproject.org/ENCBS995ULX/


title: DNase-seq from suppressor macrophage (ENCLB930WFU)

description:
https://www.encodeproject.org/experiments/ENCSR679BYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR679BYA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB930WFU
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell

value: suppressor macrophage

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS323HUL at ENCODE; https://www.encodeproject.org/ENCBS323HUL/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB905HUL)

description:
https://www.encodeproject.org/experiments/ENCSR792NKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR792NKI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB905HUL

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 34 year

value: AllCells

value: ENCBS608JBE at ENCODE; https://www.encodeproject.org/ENCBS608JBE/


title: DNase-seq from suppressor macrophage (ENCLB500JGL)

description:
https://www.encodeproject.org/experiments/ENCSR791JIS/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR791JIS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB500JGL
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 0.1% dmso for 4.5 hours

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS808BHC at ENCODE; https://www.encodeproject.org/ENCBS808BHC/


title: DNase-seq from inflammatory macrophage (ENCLB505ZMK)

description:
https://www.encodeproject.org/experiments/ENCSR111MLU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR111MLU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB505ZMK

source_name: Homo sapiens male adult (24 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: ENCBS978BGT at ENCODE; https://www.encodeproject.org/ENCBS978BGT/


title: DNase-seq from NCI-H146 (ENCLB159ZPP)

description:
https://www.encodeproject.org/experiments/ENCSR092COI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR092COI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB159ZPP

source_name: Homo sapiens NCI-H146 cell line

value: cell line

value: male

value: 59 year

value: ATCC

value: ENCBS375GHX at ENCODE; https://www.encodeproject.org/ENCBS375GHX/


title: DNase-seq from CD14-positive monocyte (ENCLB459MJS)

description:
https://www.encodeproject.org/experiments/ENCSR101KYT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR101KYT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459MJS

value: CD14-positive monocyte

value: primary cell

value: adult

value: 24 year

value: ENCBS100XFT at ENCODE; https://www.encodeproject.org/ENCBS100XFT/


title: DNase-seq from suppressor macrophage (ENCLB523LND)

description:
https://www.encodeproject.org/experiments/ENCSR791JIS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR791JIS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB523LND

value: suppressor macrophage

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS786KVI at ENCODE; https://www.encodeproject.org/ENCBS786KVI/