title: Flow-FISH CRISPR screen from K562 (ENCLB501ABA)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB501ABA
size range: 200-210

value: ENCBS337ETM at ENCODE; https://www.encodeproject.org/ENCBS337ETM/


title: Flow-FISH CRISPR screen from K562 (ENCLB516UVS)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB516UVS
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS460PEB at ENCODE; https://www.encodeproject.org/ENCBS460PEB/


title: Flow-FISH CRISPR screen from K562 (ENCLB383HPN)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB383HPN
size range: 200-210

value: ENCBS876TWK at ENCODE; https://www.encodeproject.org/ENCBS876TWK/


title: Flow-FISH CRISPR screen from K562 (ENCLB783NBJ)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB783NBJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB161WJV)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB161WJV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB122XWY)

description:
https://www.encodeproject.org/experiments/ENCSR721QHU/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR721QHU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB122XWY
size range: 200-210

value: ENCBS148VYA at ENCODE; https://www.encodeproject.org/ENCBS148VYA/


title: Flow-FISH CRISPR screen from K562 (ENCLB648QQJ)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB648QQJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB725PAD)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB725PAD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB786GCD)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB786GCD
size range: 200-210

value: ENCBS629CTP at ENCODE; https://www.encodeproject.org/ENCBS629CTP/


title: Flow-FISH CRISPR screen from K562 (ENCLB368GIH)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB368GIH
size range: 200-210

value: ENCBS999POJ at ENCODE; https://www.encodeproject.org/ENCBS999POJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB924KUX)

description:
https://www.encodeproject.org/experiments/ENCSR719TQI/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR719TQI
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB924KUX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB091DLM)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB091DLM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB216RIT)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB216RIT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB494GPP)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB494GPP
size range: 200-210

value: ENCBS524EPG at ENCODE; https://www.encodeproject.org/ENCBS524EPG/


title: Flow-FISH CRISPR screen from K562 (ENCLB466XUG)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB466XUG
size range: 200-210


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB927EYP)

description:
https://www.encodeproject.org/experiments/ENCSR718UUG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR718UUG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB927EYP

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS223VPP at ENCODE; https://www.encodeproject.org/ENCBS223VPP/


title: Flow-FISH CRISPR screen from K562 (ENCLB932LBN)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB932LBN
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB788BBB)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB788BBB
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB754AMP)

description:
https://www.encodeproject.org/experiments/ENCSR718ZYP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR718ZYP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB754AMP
size range: 200-210

value: ENCBS629CTP at ENCODE; https://www.encodeproject.org/ENCBS629CTP/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB390NJG)

description:
https://www.encodeproject.org/experiments/ENCSR718UUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718UUG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB390NJG

value: ENCBS282EVB at ENCODE; https://www.encodeproject.org/ENCBS282EVB/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB412RZU)

description:
https://www.encodeproject.org/experiments/ENCSR718UUG/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR718UUG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB412RZU

value: ENCBS456RTT at ENCODE; https://www.encodeproject.org/ENCBS456RTT/


title: Flow-FISH CRISPR screen from K562 (ENCLB450NWK)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB450NWK
size range: 200-210

value: ENCBS348NLX at ENCODE; https://www.encodeproject.org/ENCBS348NLX/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB040QZA)

description:
https://www.encodeproject.org/experiments/ENCSR718KCD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718KCD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040QZA

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS421NNR at ENCODE; https://www.encodeproject.org/ENCBS421NNR/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB260FUT)

description:
https://www.encodeproject.org/experiments/ENCSR718CZL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718CZL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB260FUT

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS311FEO at ENCODE; https://www.encodeproject.org/ENCBS311FEO/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB586WWS)

description:
https://www.encodeproject.org/experiments/ENCSR718SCQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718SCQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB586WWS

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours

value: female

value: adult

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS097YTM at ENCODE; https://www.encodeproject.org/ENCBS097YTM/


title: Flow-FISH CRISPR screen from K562 (ENCLB861ATX)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB861ATX
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS394AYA at ENCODE; https://www.encodeproject.org/ENCBS394AYA/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB044KUW)

description:
https://www.encodeproject.org/experiments/ENCSR718SCQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR718SCQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB044KUW

value: primary cell

value: ENCBS778OCI at ENCODE; https://www.encodeproject.org/ENCBS778OCI/


title: Flow-FISH CRISPR screen from K562 (ENCLB679OIG)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB679OIG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB990QNJ)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB990QNJ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB858UFD)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB858UFD
size range: 200-210

value: ENCBS348NLX at ENCODE; https://www.encodeproject.org/ENCBS348NLX/


title: Flow-FISH CRISPR screen from K562 (ENCLB912UTU)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB912UTU
size range: 200-210


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB798SFM)

description:
https://www.encodeproject.org/experiments/ENCSR715WRI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR715WRI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB798SFM

source_name: Homo sapiens male adult (38 years) CD8-positive, alpha-beta T primary cell

value: CD8-positive, alpha-beta T cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: ENCBS826KAE at ENCODE; https://www.encodeproject.org/ENCBS826KAE/


title: Flow-FISH CRISPR screen from K562 (ENCLB619QYE)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB619QYE
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from Jurkat (ENCLB258CHO)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB258CHO
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 5 ug/mL anti-CD3 for 4 hours, 100 ng/mL phorbol 12-myristate 13-acetate for 4 hours

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS736MZB at ENCODE; https://www.encodeproject.org/ENCBS736MZB/


title: DNase-seq from CD8-positive, alpha-beta T cell (ENCLB364NAC)

description:
https://www.encodeproject.org/experiments/ENCSR715WRI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR715WRI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB364NAC

value: AllCells

value: ENCBS003IIQ at ENCODE; https://www.encodeproject.org/ENCBS003IIQ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB094TED)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB094TED
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS975AJC at ENCODE; https://www.encodeproject.org/ENCBS975AJC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB185OAG)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB185OAG
size range: 200-210

value: male


title: Flow-FISH CRISPR screen from Jurkat (ENCLB960YGM)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB960YGM
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB644KGS)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB644KGS
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB952IRR)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB952IRR
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB153YXP)

description:
https://www.encodeproject.org/experiments/ENCSR713PIT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR713PIT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB153YXP

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS301GFU at ENCODE; https://www.encodeproject.org/ENCBS301GFU/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB440NSD)

description:
https://www.encodeproject.org/experiments/ENCSR712DRN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR712DRN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB440NSD

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours

value: female

value: adult

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P13232; treatment_term_name:Interleukin-7; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS673VPC at ENCODE; https://www.encodeproject.org/ENCBS673VPC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB352ZVL)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB352ZVL
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;


title: Flow-FISH CRISPR screen from K562 (ENCLB383WVR)

description:
https://www.encodeproject.org/experiments/ENCSR717BYY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR717BYY
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB383WVR
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS394AYA at ENCODE; https://www.encodeproject.org/ENCBS394AYA/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB845URI)

description:
https://www.encodeproject.org/experiments/ENCSR711PYQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR711PYQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845URI

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS326DGN at ENCODE; https://www.encodeproject.org/ENCBS326DGN/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB403JHW)

description:
https://www.encodeproject.org/experiments/ENCSR712CJF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR712CJF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB403JHW

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: adult

value: ENCBS564UAN at ENCODE; https://www.encodeproject.org/ENCBS564UAN/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB222DJE)

description:
https://www.encodeproject.org/experiments/ENCSR711PYQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR711PYQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB222DJE

value: ENCBS458YFK at ENCODE; https://www.encodeproject.org/ENCBS458YFK/


title: Flow-FISH CRISPR screen from K562 (ENCLB523ZQJ)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB523ZQJ
size range: 200-210

value: cell line

value: female

value: ENCBS564WXB at ENCODE; https://www.encodeproject.org/ENCBS564WXB/


title: Flow-FISH CRISPR screen from K562 (ENCLB457UHB)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB457UHB
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS231STN at ENCODE; https://www.encodeproject.org/ENCBS231STN/


title: Flow-FISH CRISPR screen from K562 (ENCLB242VED)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB242VED
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB142AUM)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB142AUM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB642BYE)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB642BYE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB514GEO)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB514GEO
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB918DGV)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB918DGV
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB771EPF)

description:
https://www.encodeproject.org/experiments/ENCSR712GQL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR712GQL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB771EPF

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: primary cell

value: 34 year

value: ENCBS431NZI at ENCODE; https://www.encodeproject.org/ENCBS431NZI/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB437SKY)

description:
https://www.encodeproject.org/experiments/ENCSR715NMM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR715NMM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB437SKY
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: treatment_term_name:anti-CD3; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:CHEBI:37537; treatment_term_name:phorbol 12-myristate 13-acetate; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS736MZB at ENCODE; https://www.encodeproject.org/ENCBS736MZB/


title: Flow-FISH CRISPR screen from K562 (ENCLB206REJ)

description:
https://www.encodeproject.org/experiments/ENCSR711ODF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR711ODF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB206REJ
size range: 200-210

value: cell line

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB250NRJ)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB250NRJ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS391XLY at ENCODE; https://www.encodeproject.org/ENCBS391XLY/


title: Flow-FISH CRISPR screen from K562 (ENCLB869NOC)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB869NOC
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS025JXU at ENCODE; https://www.encodeproject.org/ENCBS025JXU/


title: Flow-FISH CRISPR screen from K562 (ENCLB490WNN)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB490WNN
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB106LGT)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB106LGT
size range: 200-210

value: ENCBS748HMG at ENCODE; https://www.encodeproject.org/ENCBS748HMG/


title: Flow-FISH CRISPR screen from K562 (ENCLB014EHB)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB014EHB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB770PVS)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB770PVS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB734ZGB)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB734ZGB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB280FDL)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB280FDL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB046DGD)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB046DGD
size range: 200-210

value: ENCBS515ARF at ENCODE; https://www.encodeproject.org/ENCBS515ARF/


title: Flow-FISH CRISPR screen from K562 (ENCLB691NUV)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB691NUV
size range: 200-210


title: Control CRISPR screen from MCF-7 (ENCLB422OSW)

description:
https://www.encodeproject.org/experiments/ENCSR198LPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR198LPZ
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB422OSW
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens MCF-7 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: breast cancer (adenocarcinoma)

value: 69 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS981AJB at ENCODE; https://www.encodeproject.org/ENCBS981AJB/


title: Flow-FISH CRISPR screen from K562 (ENCLB441OZT)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB441OZT
size range: 200-210

value: ENCBS603GCZ at ENCODE; https://www.encodeproject.org/ENCBS603GCZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB885QYX)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB885QYX
size range: 200-210

value: cell line

value: ENCBS290LIU at ENCODE; https://www.encodeproject.org/ENCBS290LIU/


title: Flow-FISH CRISPR screen from K562 (ENCLB837UCZ)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB837UCZ
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB374TWB)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB374TWB
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB350QFJ)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB350QFJ
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS172ZZM at ENCODE; https://www.encodeproject.org/ENCBS172ZZM/


title: Flow-FISH CRISPR screen from K562 (ENCLB970LZM)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB970LZM
size range: 200-210

value: ATCC

value: ENCBS391XLY at ENCODE; https://www.encodeproject.org/ENCBS391XLY/


title: Flow-FISH CRISPR screen from K562 (ENCLB916KOE)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB916KOE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB028CZU)

description:
https://www.encodeproject.org/experiments/ENCSR710CKZ/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR710CKZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB028CZU
size range: 200-210

value: ENCBS025JXU at ENCODE; https://www.encodeproject.org/ENCBS025JXU/


title: Flow-FISH CRISPR screen from K562 (ENCLB849ABW)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB849ABW
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB508TWI)

description:
https://www.encodeproject.org/experiments/ENCSR711KOI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR711KOI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB508TWI

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: male

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS308HTR at ENCODE; https://www.encodeproject.org/ENCBS308HTR/


title: Flow-FISH CRISPR screen from K562 (ENCLB456ZQL)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB456ZQL
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB079NZR)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB079NZR
size range: 200-210

value: female

value: ENCBS290LIU at ENCODE; https://www.encodeproject.org/ENCBS290LIU/


title: Flow-FISH CRISPR screen from K562 (ENCLB537ELJ)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB537ELJ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: Control CRISPR screen from MCF-7 (ENCLB028YDA)

description:
https://www.encodeproject.org/experiments/ENCSR198LPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR198LPZ
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB028YDA
size range: 710-720

value: breast cancer (adenocarcinoma)

value: 69 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS331CSC at ENCODE; https://www.encodeproject.org/ENCBS331CSC/


title: DNase-seq from breast epithelium (ENCLB010JFV)

description:
https://www.encodeproject.org/experiments/ENCSR708IUB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR708IUB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB010JFV

source_name: Homo sapiens male adult (37 years) breast epithelium tissue

value: breast epithelium

value: tissue

value: 37 year

value: Kristin Ardlie

value: ENCBS746PUY at ENCODE; https://www.encodeproject.org/ENCBS746PUY/


title: Flow-FISH CRISPR screen from K562 (ENCLB284QYX)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB284QYX
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB145SAF)

description:
https://www.encodeproject.org/experiments/ENCSR197JOR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR197JOR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145SAF

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS988OEL at ENCODE; https://www.encodeproject.org/ENCBS988OEL/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB125WWS)

description:
https://www.encodeproject.org/experiments/ENCSR197JOR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR197JOR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB125WWS

value: adult

value: ENCBS847JDL at ENCODE; https://www.encodeproject.org/ENCBS847JDL/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB001JZO)

description:
https://www.encodeproject.org/experiments/ENCSR196PES/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR196PES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB001JZO

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, anti-CD3 and anti-CD28 coated beads for...

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS015WDR at ENCODE; https://www.encodeproject.org/ENCBS015WDR/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB328OCI)

description:
https://www.encodeproject.org/experiments/ENCSR194LBI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR194LBI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB328OCI

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: ENCBS763QXL at ENCODE; https://www.encodeproject.org/ENCBS763QXL/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB868RBN)

description:
https://www.encodeproject.org/experiments/ENCSR708BGC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR708BGC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB868RBN

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS000GGZ at ENCODE; https://www.encodeproject.org/ENCBS000GGZ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB180KAR)

description:
https://www.encodeproject.org/experiments/ENCSR708BGC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR708BGC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB180KAR

value: primary cell

value: ENCBS605BOB at ENCODE; https://www.encodeproject.org/ENCBS605BOB/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB105PTA)

description:
https://www.encodeproject.org/experiments/ENCSR194IDR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR194IDR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB105PTA

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour;

value: ENCBS004CRA at ENCODE; https://www.encodeproject.org/ENCBS004CRA/


title: Flow-FISH CRISPR screen from K562 (ENCLB667BBS)

description:
https://www.encodeproject.org/experiments/ENCSR708OJT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR708OJT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB667BBS
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS603GCZ at ENCODE; https://www.encodeproject.org/ENCBS603GCZ/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB460RRT)

description:
https://www.encodeproject.org/experiments/ENCSR708HNS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR708HNS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB460RRT

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: adult

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS740ALY at ENCODE; https://www.encodeproject.org/ENCBS740ALY/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB447MXJ)

description:
https://www.encodeproject.org/experiments/ENCSR704CZH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR704CZH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB447MXJ

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS008LWF at ENCODE; https://www.encodeproject.org/ENCBS008LWF/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB922EVJ)

description:
https://www.encodeproject.org/experiments/ENCSR196PES/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR196PES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB922EVJ

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS478WXD at ENCODE; https://www.encodeproject.org/ENCBS478WXD/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB542JHR)

description:
https://www.encodeproject.org/experiments/ENCSR194LBI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR194LBI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB542JHR

value: CD4-positive, alpha-beta T cell

value: ENCBS785FVK at ENCODE; https://www.encodeproject.org/ENCBS785FVK/


title: Control CRISPR screen from DU 145 (ENCLB783GUI)

description:
https://www.encodeproject.org/experiments/ENCSR193FCX/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR193FCX
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB783GUI
size range: 710-720

source_name: Homo sapiens DU 145 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: cell line

value: male

value: Prostate carcinoma

value: 69 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS445JSI at ENCODE; https://www.encodeproject.org/ENCBS445JSI/


title: Flow-FISH CRISPR screen from K562 (ENCLB031XBU)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB031XBU
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS531OAU at ENCODE; https://www.encodeproject.org/ENCBS531OAU/


title: Flow-FISH CRISPR screen from K562 (ENCLB987FDU)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB987FDU
size range: 200-210

value: female

value: ENCBS664OVR at ENCODE; https://www.encodeproject.org/ENCBS664OVR/


title: Flow-FISH CRISPR screen from K562 (ENCLB876ATA)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB876ATA
size range: 200-210


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB962RCO)

description:
https://www.encodeproject.org/experiments/ENCSR708HNS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR708HNS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB962RCO

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS281WAX at ENCODE; https://www.encodeproject.org/ENCBS281WAX/


title: Flow-FISH CRISPR screen from K562 (ENCLB628FYK)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB628FYK
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB531HBY)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB531HBY
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB784AHG)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB784AHG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB584VRO)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB584VRO
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB034FCU)

description:
https://www.encodeproject.org/experiments/ENCSR193CKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR193CKS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB034FCU

value: CD4-positive, alpha-beta T cell

value: 34 year

value: ENCBS838KOV at ENCODE; https://www.encodeproject.org/ENCBS838KOV/


title: Flow-FISH CRISPR screen from K562 (ENCLB153JOQ)

description:
https://www.encodeproject.org/experiments/ENCSR192ZOX/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR192ZOX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB153JOQ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB108MOY)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB108MOY
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS751GKJ at ENCODE; https://www.encodeproject.org/ENCBS751GKJ/


title: DNase-seq from HUDEP-2 (ENCLB158NXA)

description:
https://www.encodeproject.org/experiments/ENCSR701KRI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR701KRI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB158NXA

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS590OLH at ENCODE; https://www.encodeproject.org/ENCBS590OLH/


title: Flow-FISH CRISPR screen from K562 (ENCLB001TEB)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB001TEB
size range: 200-210

value: female

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB414WSQ)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB414WSQ
size range: 200-210

value: ENCBS730LJV at ENCODE; https://www.encodeproject.org/ENCBS730LJV/


title: Flow-FISH CRISPR screen from K562 (ENCLB401UHM)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB401UHM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB763BNT)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB763BNT
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB751LFW)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB751LFW
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB649UCY)

description:
https://www.encodeproject.org/experiments/ENCSR194AQB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR194AQB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB649UCY

value: immature natural killer cell

value: primary cell

value: 30 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS481PJT at ENCODE; https://www.encodeproject.org/ENCBS481PJT/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB047LQQ)

description:
https://www.encodeproject.org/experiments/ENCSR191UKK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR191UKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB047LQQ

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours

value: adult

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS384YEC at ENCODE; https://www.encodeproject.org/ENCBS384YEC/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB866QMQ)

description:
https://www.encodeproject.org/experiments/ENCSR190OQD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR190OQD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB866QMQ

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS600ZLJ at ENCODE; https://www.encodeproject.org/ENCBS600ZLJ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB646FNE)

description:
https://www.encodeproject.org/experiments/ENCSR698VCR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR698VCR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB646FNE

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours

value: female

value: 33 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS810GLK at ENCODE; https://www.encodeproject.org/ENCBS810GLK/


title: Flow-FISH CRISPR screen from K562 (ENCLB938VQE)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB938VQE
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS730LJV at ENCODE; https://www.encodeproject.org/ENCBS730LJV/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB227YFV)

description:
https://www.encodeproject.org/experiments/ENCSR191ADB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR191ADB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB227YFV

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-2 for 24 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 39 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS723WWX at ENCODE; https://www.encodeproject.org/ENCBS723WWX/


title: Flow-FISH CRISPR screen from K562 (ENCLB973RMX)

description:
https://www.encodeproject.org/experiments/ENCSR190MQK/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR190MQK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB973RMX
size range: 200-210

value: female

value: ENCBS018YDN at ENCODE; https://www.encodeproject.org/ENCBS018YDN/


title: Control CRISPR screen from DU 145 (ENCLB168IMK)

description:
https://www.encodeproject.org/experiments/ENCSR193FCX/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR193FCX
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB168IMK
size range: 710-720

value: male

value: Prostate carcinoma

value: 69 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS729PSF at ENCODE; https://www.encodeproject.org/ENCBS729PSF/


title: DNase-seq from activated T-cell (ENCLB783PQV)

description:
https://www.encodeproject.org/experiments/ENCSR699SPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR699SPK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB783PQV

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: activated T-cell

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS789TVY at ENCODE; https://www.encodeproject.org/ENCBS789TVY/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB030YZF)

description:
https://www.encodeproject.org/experiments/ENCSR699FZG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR699FZG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB030YZF

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 33 year

value: John Stamatoyannopoulos, UW

value: ENCBS520TOW at ENCODE; https://www.encodeproject.org/ENCBS520TOW/


title: Flow-FISH CRISPR screen from K562 (ENCLB867OVZ)

description:
https://www.encodeproject.org/experiments/ENCSR190MQK/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR190MQK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB867OVZ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS018YDN at ENCODE; https://www.encodeproject.org/ENCBS018YDN/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB635JLF)

description:
https://www.encodeproject.org/experiments/ENCSR698VCR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR698VCR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB635JLF

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS033GST at ENCODE; https://www.encodeproject.org/ENCBS033GST/


title: Flow-FISH CRISPR screen from K562 (ENCLB105LTK)

description:
https://www.encodeproject.org/experiments/ENCSR190MQK/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR190MQK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB105LTK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB316SWI)

description:
https://www.encodeproject.org/experiments/ENCSR190MQK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR190MQK
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB316SWI
size range: 200-210


title: DNase-seq from immature natural killer cell (ENCLB482OTN)

description:
https://www.encodeproject.org/experiments/ENCSR189TKI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR189TKI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB482OTN

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell treated with 100 ng/mL Interleukin-15 for 24 hours

value: immature natural killer cell

value: male

value: 30 year

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS932POZ at ENCODE; https://www.encodeproject.org/ENCBS932POZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB376QBJ)

description:
https://www.encodeproject.org/experiments/ENCSR698GAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR698GAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB376QBJ
size range: 200-210

value: adult

value: ENCBS973TII at ENCODE; https://www.encodeproject.org/ENCBS973TII/


title: Flow-FISH CRISPR screen from K562 (ENCLB734UIY)

description:
https://www.encodeproject.org/experiments/ENCSR698GAC/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR698GAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB734UIY
size range: 200-210

value: cell line


title: DNase-seq from activated T-cell (ENCLB199WWV)

description:
https://www.encodeproject.org/experiments/ENCSR189TCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR189TCO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB199WWV

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours

value: activated T-cell

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS395MJQ at ENCODE; https://www.encodeproject.org/ENCBS395MJQ/


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB864XFO)

description:
https://www.encodeproject.org/experiments/ENCSR188KVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR188KVY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB864XFO

source_name: Homo sapiens male adult (24 years) stimulated activated naive CD4-positive, alpha-beta T primary cell

value: 24 year

value: ENCBS467DJI at ENCODE; https://www.encodeproject.org/ENCBS467DJI/


title: Flow-FISH CRISPR screen from K562 (ENCLB745VXW)

description:
https://www.encodeproject.org/experiments/ENCSR698GAC/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR698GAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB745VXW
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from HUDEP-2 (ENCLB241XSK)

description:
https://www.encodeproject.org/experiments/ENCSR190EBK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR190EBK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB241XSK

value: male

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS871HOU at ENCODE; https://www.encodeproject.org/ENCBS871HOU/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB784FLD)

description:
https://www.encodeproject.org/experiments/ENCSR187PYU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR187PYU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB784FLD

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS623RSP at ENCODE; https://www.encodeproject.org/ENCBS623RSP/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB863MKR)

description:
https://www.encodeproject.org/experiments/ENCSR698MMQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR698MMQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB863MKR

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS423SAS at ENCODE; https://www.encodeproject.org/ENCBS423SAS/


title: Flow-FISH CRISPR screen from K562 (ENCLB386ZGY)

description:
https://www.encodeproject.org/experiments/ENCSR191YNB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR191YNB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB386ZGY
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS730LJV at ENCODE; https://www.encodeproject.org/ENCBS730LJV/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB777YAM)

description:
https://www.encodeproject.org/experiments/ENCSR697VRN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR697VRN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB777YAM

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: adult

value: 37 year

value: Shelly Heimfeld

value: ENCBS278GKE at ENCODE; https://www.encodeproject.org/ENCBS278GKE/


title: Flow-FISH CRISPR screen from K562 (ENCLB279PSK)

description:
https://www.encodeproject.org/experiments/ENCSR185LPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR185LPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB279PSK
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS825MJO at ENCODE; https://www.encodeproject.org/ENCBS825MJO/


title: Flow-FISH CRISPR screen from K562 (ENCLB496CXG)

description:
https://www.encodeproject.org/experiments/ENCSR698GAC/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR698GAC
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB496CXG
size range: 200-210

value: ENCBS973TII at ENCODE; https://www.encodeproject.org/ENCBS973TII/


title: Flow-FISH CRISPR screen from K562 (ENCLB348PWC)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB348PWC
size range: 200-210

value: ENCBS370UKE at ENCODE; https://www.encodeproject.org/ENCBS370UKE/


title: Flow-FISH CRISPR screen from K562 (ENCLB254MUJ)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB254MUJ
size range: 200-210

value: ENCBS340ZZC at ENCODE; https://www.encodeproject.org/ENCBS340ZZC/


title: Flow-FISH CRISPR screen from K562 (ENCLB387EBD)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB387EBD
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB011BTI)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB011BTI
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: ENCBS046EBX at ENCODE; https://www.encodeproject.org/ENCBS046EBX/


title: Flow-FISH CRISPR screen from K562 (ENCLB869KYI)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB869KYI
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year


title: DNase-seq from HUDEP-2 (ENCLB687TSK)

description:
https://www.encodeproject.org/experiments/ENCSR187NRI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR187NRI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB687TSK

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS119LZN at ENCODE; https://www.encodeproject.org/ENCBS119LZN/


title: proliferation CRISPR screen from HepG2 (ENCLB524CGC)

description:
https://www.encodeproject.org/experiments/ENCSR694XBP/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR694XBP
assay title: proliferation CRISPR screen
possible controls: ENCSR362QSD
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB524CGC
size range: 710-720

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: hepatocellular carcinoma

value: 15 year

value: Bing Ren, UCSD

value: ATCC

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS451LCJ at ENCODE; https://www.encodeproject.org/ENCBS451LCJ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB309NAF)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB309NAF
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ENCBS698ZPC at ENCODE; https://www.encodeproject.org/ENCBS698ZPC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB496SUW)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB496SUW
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB116MGX)

description:
https://www.encodeproject.org/experiments/ENCSR185LPT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR185LPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB116MGX
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: ENCBS825MJO at ENCODE; https://www.encodeproject.org/ENCBS825MJO/


title: Flow-FISH CRISPR screen from K562 (ENCLB314KLL)

description:
https://www.encodeproject.org/experiments/ENCSR185LPT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR185LPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB314KLL
size range: 200-210


title: proliferation CRISPR screen from HepG2 (ENCLB685FIM)

description:
https://www.encodeproject.org/experiments/ENCSR694XBP/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR694XBP
assay title: proliferation CRISPR screen
possible controls: ENCSR362QSD
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB685FIM
size range: 710-720

value: hepatocellular carcinoma

value: 15 year

value: Bing Ren, UCSD

value: ENCBS623TRQ at ENCODE; https://www.encodeproject.org/ENCBS623TRQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB515AIX)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB515AIX
size range: 200-210

value: ATCC

value: ENCBS340ZZC at ENCODE; https://www.encodeproject.org/ENCBS340ZZC/


title: Flow-FISH CRISPR screen from K562 (ENCLB550WDS)

description:
https://www.encodeproject.org/experiments/ENCSR185LPT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR185LPT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB550WDS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB619LSC)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB619LSC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB330TSJ)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB330TSJ
size range: 200-210

value: ENCBS370UKE at ENCODE; https://www.encodeproject.org/ENCBS370UKE/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB705TXW)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB705TXW
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: ENCBS046EBX at ENCODE; https://www.encodeproject.org/ENCBS046EBX/


title: DNase-seq from colonic mucosa (ENCLB271QNV)

description:
https://www.encodeproject.org/experiments/ENCSR693EXF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR693EXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB271QNV

source_name: Homo sapiens female adult (41 years) colonic mucosa tissue

value: colonic mucosa

value: tissue

value: female

value: DM:no; HTN:no; CAD:no

value: 41 year

value: John Stamatoyannopoulos, UW

value: Shin Lin

value: ENCBS119ABI at ENCODE; https://www.encodeproject.org/ENCBS119ABI/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB238BGX)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB238BGX
size range: 200-210

value: cell line

value: 14 year

value: Jesse Engreitz, Stanford


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB357CLN)

description:
https://www.encodeproject.org/experiments/ENCSR690DEH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR690DEH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB357CLN

source_name: Homo sapiens male adult (38 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 38 year

value: AllCells

value: ENCBS360VSJ at ENCODE; https://www.encodeproject.org/ENCBS360VSJ/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB220SCJ)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB220SCJ
size range: 200-210

value: Jurkat

value: male

value: acute T cell leukemia

value: child

value: ATCC

value: ENCBS046EBX at ENCODE; https://www.encodeproject.org/ENCBS046EBX/


title: Flow-FISH CRISPR screen from K562 (ENCLB734UJT)

description:
https://www.encodeproject.org/experiments/ENCSR185JLM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR185JLM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB734UJT
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS340ZZC at ENCODE; https://www.encodeproject.org/ENCBS340ZZC/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB944BIG)

description:
https://www.encodeproject.org/experiments/ENCSR691FHE/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR691FHE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB944BIG
size range: 200-210

value: cell line

value: 14 year

value: Jesse Engreitz, Stanford

value: ENCBS698ZPC at ENCODE; https://www.encodeproject.org/ENCBS698ZPC/


title: DNase-seq from K562 (ENCLB741GGU)

description:
https://www.encodeproject.org/experiments/ENCSR183WIP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR183WIP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB741GGU

source_name: Homo sapiens K562 cell line

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS444LGI at ENCODE; https://www.encodeproject.org/ENCBS444LGI/