title: DNase-seq from activated T-cell (ENCLB202LGF)

description:
https://www.encodeproject.org/experiments/ENCSR915KYY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR915KYY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB202LGF

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: activated T-cell

value: primary cell

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS338GYN at ENCODE; https://www.encodeproject.org/ENCBS338GYN/


title: DNase-seq from GM12878 (ENCLB188MKM)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 8
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB188MKM

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens GM12878 cell line

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: unknown

tag: dev stage

value: adult

tag: age

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: Coriell

tag: link

value: ENCBS967SGP at ENCODE; https://www.encodeproject.org/ENCBS967SGP/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB129LUS)

description:
https://www.encodeproject.org/experiments/ENCSR915IJN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR915IJN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB129LUS

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours

value: 33 year

value: AllCells

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS408EYS at ENCODE; https://www.encodeproject.org/ENCBS408EYS/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB937RCG)

description:
https://www.encodeproject.org/experiments/ENCSR915IJN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR915IJN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB937RCG

value: ENCBS249SLD at ENCODE; https://www.encodeproject.org/ENCBS249SLD/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB976SZM)

description:
https://www.encodeproject.org/experiments/ENCSR915IJN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR915IJN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB976SZM

value: ENCBS400FSM at ENCODE; https://www.encodeproject.org/ENCBS400FSM/


title: DNase-seq from GM12878 (ENCLB772VLU)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 35
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB772VLU

value: ENCBS688GRY at ENCODE; https://www.encodeproject.org/ENCBS688GRY/


title: DNase-seq from GM12878 (ENCLB914EZH)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 34
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB914EZH

value: ENCBS596HIA at ENCODE; https://www.encodeproject.org/ENCBS596HIA/


title: DNase-seq from K562 (ENCLB010ZPD)

description:
https://www.encodeproject.org/experiments/ENCSR911UZT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR911UZT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB010ZPD

source_name: Homo sapiens K562 cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS433MKW at ENCODE; https://www.encodeproject.org/ENCBS433MKW/


title: DNase-seq from GM12878 (ENCLB476TDG)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 7
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB476TDG

value: cell line

value: female

value: unknown

value: ENCBS991TYW at ENCODE; https://www.encodeproject.org/ENCBS991TYW/


title: DNase-seq from GM12878 (ENCLB740RUV)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 13
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB740RUV

value: adult

value: John Stamatoyannopoulos, UW

value: Coriell

value: ENCBS028AJS at ENCODE; https://www.encodeproject.org/ENCBS028AJS/


title: DNase-seq from GM12878 (ENCLB143OPW)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 11
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB143OPW

value: ENCBS305EXZ at ENCODE; https://www.encodeproject.org/ENCBS305EXZ/


title: DNase-seq from GM12878 (ENCLB514HQS)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB514HQS

value: ENCBS297VIZ at ENCODE; https://www.encodeproject.org/ENCBS297VIZ/


title: DNase-seq from GM12878 (ENCLB432JBK)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB432JBK

value: ENCBS358FJB at ENCODE; https://www.encodeproject.org/ENCBS358FJB/


title: DNase-seq from GM12878 (ENCLB644PIN)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 12
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB644PIN

value: ENCBS200NBC at ENCODE; https://www.encodeproject.org/ENCBS200NBC/


title: DNase-seq from GM12878 (ENCLB485POC)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 6
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB485POC

value: ENCBS098JSE at ENCODE; https://www.encodeproject.org/ENCBS098JSE/


title: DNase-seq from GM12878 (ENCLB392HDE)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 15
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB392HDE

value: ENCBS725EGC at ENCODE; https://www.encodeproject.org/ENCBS725EGC/


title: DNase-seq from GM12878 (ENCLB081RGW)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 20
technical replicate number: 2
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB081RGW

value: ENCBS272IWA at ENCODE; https://www.encodeproject.org/ENCBS272IWA/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB988ZJD)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB988ZJD
size range: 200-210

source_name: Homo sapiens GM12878 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS852SEP at ENCODE; https://www.encodeproject.org/ENCBS852SEP/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB953MCW)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB953MCW
size range: 200-210

value: cell line

value: female

value: ENCBS906DCV at ENCODE; https://www.encodeproject.org/ENCBS906DCV/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB191TAK)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB191TAK
size range: 200-210

value: unknown

value: adult


title: Flow-FISH CRISPR screen from GM12878 (ENCLB533QHL)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB533QHL
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB533WDZ)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB533WDZ
size range: 200-210


title: DNase-seq from GM12878 (ENCLB860SLK)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 14
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB860SLK

value: John Stamatoyannopoulos, UW

value: Coriell

value: ENCBS636BSQ at ENCODE; https://www.encodeproject.org/ENCBS636BSQ/


title: DNase-seq from GM12878 (ENCLB689QYS)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 10
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB689QYS

value: ENCBS166KTB at ENCODE; https://www.encodeproject.org/ENCBS166KTB/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB841YQT)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB841YQT
size range: 200-210


title: DNase-seq from GM12878 (ENCLB878VOD)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 9
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB878VOD

value: ENCBS646KDY at ENCODE; https://www.encodeproject.org/ENCBS646KDY/


title: DNase-seq from GM12878 (ENCLB832KGF)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB832KGF

value: ENCBS040TGZ at ENCODE; https://www.encodeproject.org/ENCBS040TGZ/


title: DNase-seq from GM12878 (ENCLB923ENN)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 37
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB923ENN

value: ENCBS445RRZ at ENCODE; https://www.encodeproject.org/ENCBS445RRZ/


title: Flow-FISH CRISPR screen from GM12878 (ENCLB309TXB)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB309TXB
size range: 200-210


title: Flow-FISH CRISPR screen from GM12878 (ENCLB709BNE)

description:
https://www.encodeproject.org/experiments/ENCSR910LPP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR910LPP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-05-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB709BNE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB829JTW)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB829JTW
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS593IIA at ENCODE; https://www.encodeproject.org/ENCBS593IIA/


title: Flow-FISH CRISPR screen from K562 (ENCLB606MMW)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB606MMW
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS340XJK at ENCODE; https://www.encodeproject.org/ENCBS340XJK/


title: Flow-FISH CRISPR screen from K562 (ENCLB538TZF)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB538TZF
size range: 200-210

value: cell line

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB627UPD)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB627UPD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB931JLE)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB931JLE
size range: 200-210


title: DNase-seq from GM12878 (ENCLB545UIR)

description:
https://www.encodeproject.org/experiments/ENCSR910MAP/
***************
biological replicate number: 36
technical replicate number: 1
description:
experiment encode accession: ENCSR910MAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB545UIR

value: unknown

value: ENCBS203QPC at ENCODE; https://www.encodeproject.org/ENCBS203QPC/


title: Flow-FISH CRISPR screen from K562 (ENCLB976BHX)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB976BHX
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB293XYU)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB293XYU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB087UKK)

description:
https://www.encodeproject.org/experiments/ENCSR906TMG/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR906TMG
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB087UKK
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB557SGC)

description:
https://www.encodeproject.org/experiments/ENCSR903KED/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR903KED
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB557SGC

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS215AEM at ENCODE; https://www.encodeproject.org/ENCBS215AEM/


title: DNase-seq from immature natural killer cell (ENCLB932TQB)

description:
https://www.encodeproject.org/experiments/ENCSR897HPT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR897HPT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB932TQB

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: 30 year

value: Shelly Heimfeld

value: ENCBS169DCW at ENCODE; https://www.encodeproject.org/ENCBS169DCW/


title: STARR-seq from A549 (ENCLB270ALU)

description:
https://www.encodeproject.org/experiments/ENCSR895FDL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR895FDL
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB270ALU
fragmentation methods: shearing (generic)
size range: 200-600

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection

value: 58 year

tag: passage number

value: Kevin White, UChicago

value: ATCC

value: ENCBS479SAP at ENCODE; https://www.encodeproject.org/ENCBS479SAP/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB885VGX)

description:
https://www.encodeproject.org/experiments/ENCSR898VHI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR898VHI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB885VGX

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: female

value: 33 year

value: ENCBS173CPK at ENCODE; https://www.encodeproject.org/ENCBS173CPK/


title: DNase-seq from THP-1 (ENCLB225QKI)

description:
https://www.encodeproject.org/experiments/ENCSR896ADX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR896ADX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB225QKI
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens THP-1 cell line

value: cell line

value: male

value: adult

value: 1 year

value: ENCBS716KKS at ENCODE; https://www.encodeproject.org/ENCBS716KKS/


title: Flow-FISH CRISPR screen from K562 (ENCLB981AZW)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB981AZW
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS018EJO at ENCODE; https://www.encodeproject.org/ENCBS018EJO/


title: DNase-seq from HUDEP-2 (ENCLB741YBS)

description:
https://www.encodeproject.org/experiments/ENCSR894TXO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR894TXO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB741YBS

source_name: Homo sapiens HUDEP-2 cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS735WPD at ENCODE; https://www.encodeproject.org/ENCBS735WPD/


title: Flow-FISH CRISPR screen from K562 (ENCLB527HFA)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB527HFA
size range: 200-210

value: ATCC

value: ENCBS662LYO at ENCODE; https://www.encodeproject.org/ENCBS662LYO/


title: DNase-seq from occipital lobe (ENCLB590NKD)

description:
https://www.encodeproject.org/experiments/ENCSR905UAW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR905UAW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB590NKD

source_name: Homo sapiens male adult (87 years) occipital lobe tissue

value: occipital lobe

value: tissue

value: 87 year

value: Thomas Montine

value: ENCBS375BRH at ENCODE; https://www.encodeproject.org/ENCBS375BRH/


title: Flow-FISH CRISPR screen from K562 (ENCLB983VRL)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB983VRL
size range: 200-210

value: cell line

value: female

value: adult


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB349LEN)

description:
https://www.encodeproject.org/experiments/ENCSR905WMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR905WMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB349LEN

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: primary cell

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS440KVX at ENCODE; https://www.encodeproject.org/ENCBS440KVX/


title: DNase-seq from T-cell (ENCLB050YUY)

description:
https://www.encodeproject.org/experiments/ENCSR880QIK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR880QIK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB050YUY

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: ENCBS590KYM at ENCODE; https://www.encodeproject.org/ENCBS590KYM/


title: proliferation CRISPR screen from K562 (ENCLB197IKH)

description:
https://www.encodeproject.org/experiments/ENCSR904DYJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR904DYJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB197IKH

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS731THV at ENCODE; https://www.encodeproject.org/ENCBS731THV/


title: proliferation CRISPR screen from HCT116 (ENCLB888QEU)

description:
https://www.encodeproject.org/experiments/ENCSR901RFR/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR901RFR
assay title: proliferation CRISPR screen
possible controls: ENCSR393DOW
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB888QEU
size range: 710-720

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 14 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: cell line

value: colorectal carcinoma

value: adult

value: 48 year

value: Bing Ren, UCSD

value: ATCC

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS604BLV at ENCODE; https://www.encodeproject.org/ENCBS604BLV/


title: proliferation CRISPR screen from HCT116 (ENCLB303TBP)

description:
https://www.encodeproject.org/experiments/ENCSR901RFR/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR901RFR
assay title: proliferation CRISPR screen
possible controls: ENCSR393DOW
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB303TBP
size range: 710-720

value: male

value: ENCBS389TMS at ENCODE; https://www.encodeproject.org/ENCBS389TMS/


title: proliferation CRISPR screen from K562 (ENCLB286FPF)

description:
https://www.encodeproject.org/experiments/ENCSR904DYJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR904DYJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB286FPF

value: female

value: ENCBS101ONF at ENCODE; https://www.encodeproject.org/ENCBS101ONF/


title: Flow-FISH CRISPR screen from K562 (ENCLB775JPG)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB775JPG
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS073MKF at ENCODE; https://www.encodeproject.org/ENCBS073MKF/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB591FQQ)

description:
https://www.encodeproject.org/experiments/ENCSR878QFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR878QFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB591FQQ

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS433TUA at ENCODE; https://www.encodeproject.org/ENCBS433TUA/


title: Flow-FISH CRISPR screen from K562 (ENCLB877XTC)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB877XTC
size range: 200-210

value: cell line

value: adult

value: ATCC

value: ENCBS286LMG at ENCODE; https://www.encodeproject.org/ENCBS286LMG/


title: DNase-seq from T-cell (ENCLB299HFZ)

description:
https://www.encodeproject.org/experiments/ENCSR896FUU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR896FUU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB299HFZ

source_name: Homo sapiens female adult (33 years) T-cell primary cell

value: T-cell

value: ENCBS371ONX at ENCODE; https://www.encodeproject.org/ENCBS371ONX/


title: DNase-seq from activated T-cell (ENCLB529OZE)

description:
https://www.encodeproject.org/experiments/ENCSR906WMO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR906WMO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB529OZE

source_name: Homo sapiens female adult (33 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: activated T-cell

value: female

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS908LOT at ENCODE; https://www.encodeproject.org/ENCBS908LOT/


title: STARR-seq from A549 (ENCLB279KHA)

description:
https://www.encodeproject.org/experiments/ENCSR895FDL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR895FDL
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR024WBS
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB279KHA
fragmentation methods: shearing (generic)
size range: 200-600

value: male

value: 58 year

value: Kevin White, UChicago

value: ENCBS869WLR at ENCODE; https://www.encodeproject.org/ENCBS869WLR/


title: Flow-FISH CRISPR screen from K562 (ENCLB234FXX)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB234FXX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS662LYO at ENCODE; https://www.encodeproject.org/ENCBS662LYO/


title: Flow-FISH CRISPR screen from K562 (ENCLB641FSO)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB641FSO
size range: 200-210

value: cell line

value: adult

value: ENCBS073MKF at ENCODE; https://www.encodeproject.org/ENCBS073MKF/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB601QFD)

description:
https://www.encodeproject.org/experiments/ENCSR905WMP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR905WMP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB601QFD

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS430HOM at ENCODE; https://www.encodeproject.org/ENCBS430HOM/


title: Flow-FISH CRISPR screen from K562 (ENCLB291ZIK)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB291ZIK
size range: 200-210

value: female

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB502LPE)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB502LPE
size range: 200-210

value: ENCBS018EJO at ENCODE; https://www.encodeproject.org/ENCBS018EJO/


title: Flow-FISH CRISPR screen from K562 (ENCLB236FRZ)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB236FRZ
size range: 200-210


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB851JBV)

description:
https://www.encodeproject.org/experiments/ENCSR891QSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR891QSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB851JBV

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour

value: male

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS979VSQ at ENCODE; https://www.encodeproject.org/ENCBS979VSQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB387WPC)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB387WPC
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS286LMG at ENCODE; https://www.encodeproject.org/ENCBS286LMG/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB679IJS)

description:
https://www.encodeproject.org/experiments/ENCSR891QSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR891QSP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB679IJS

value: primary cell

value: adult

value: ENCBS411YLM at ENCODE; https://www.encodeproject.org/ENCBS411YLM/


title: DNase-seq from T-cell (ENCLB337AGY)

description:
https://www.encodeproject.org/experiments/ENCSR880QIK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR880QIK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB337AGY

value: T-cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS876RTG at ENCODE; https://www.encodeproject.org/ENCBS876RTG/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB284YLL)

description:
https://www.encodeproject.org/experiments/ENCSR877MQW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR877MQW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB284YLL

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS471WRZ at ENCODE; https://www.encodeproject.org/ENCBS471WRZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB003FTW)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB003FTW
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: female

value: ATCC

value: ENCBS485YOB at ENCODE; https://www.encodeproject.org/ENCBS485YOB/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB732QGK)

description:
https://www.encodeproject.org/experiments/ENCSR878QFU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR878QFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB732QGK

value: 33 year

value: ENCBS295KBM at ENCODE; https://www.encodeproject.org/ENCBS295KBM/


title: Flow-FISH CRISPR screen from K562 (ENCLB629HWX)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB629HWX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS286LMG at ENCODE; https://www.encodeproject.org/ENCBS286LMG/


title: Flow-FISH CRISPR screen from K562 (ENCLB925CRF)

description:
https://www.encodeproject.org/experiments/ENCSR894QUJ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR894QUJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB925CRF
size range: 200-210

value: adult

value: ENCBS662LYO at ENCODE; https://www.encodeproject.org/ENCBS662LYO/


title: Flow-FISH CRISPR screen from K562 (ENCLB923HEI)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB923HEI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB032HDE)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB032HDE
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB820GQV)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB820GQV
size range: 200-210

value: ENCBS627MYV at ENCODE; https://www.encodeproject.org/ENCBS627MYV/


title: Flow-FISH CRISPR screen from K562 (ENCLB624TEK)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB624TEK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB314ZYT)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB314ZYT
size range: 200-210

value: ENCBS073MKF at ENCODE; https://www.encodeproject.org/ENCBS073MKF/


title: Flow-FISH CRISPR screen from K562 (ENCLB084EQD)

description:
https://www.encodeproject.org/experiments/ENCSR877UAZ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR877UAZ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB084EQD
size range: 200-210


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB729CDJ)

description:
https://www.encodeproject.org/experiments/ENCSR878VDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR878VDA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB729CDJ

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour

value: primary cell

value: male

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS500YOJ at ENCODE; https://www.encodeproject.org/ENCBS500YOJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB539GNJ)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB539GNJ
size range: 200-210

value: cell line

value: female

value: ATCC

value: ENCBS485YOB at ENCODE; https://www.encodeproject.org/ENCBS485YOB/


title: Flow-FISH CRISPR screen from K562 (ENCLB324GZW)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB324GZW
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB665MLU)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB665MLU
size range: 200-210

value: adult


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB365KUT)

description:
https://www.encodeproject.org/experiments/ENCSR876NYG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR876NYG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB365KUT

source_name: Homo sapiens male adult (42 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS414NRY at ENCODE; https://www.encodeproject.org/ENCBS414NRY/


title: Flow-FISH CRISPR screen from K562 (ENCLB575MCL)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB575MCL
size range: 200-210

value: ENCBS897NDP at ENCODE; https://www.encodeproject.org/ENCBS897NDP/


title: Flow-FISH CRISPR screen from K562 (ENCLB901MBA)

description:
https://www.encodeproject.org/experiments/ENCSR877MKJ/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR877MKJ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB901MBA
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB357EXX)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB357EXX
size range: 200-210

value: ENCBS852JBF at ENCODE; https://www.encodeproject.org/ENCBS852JBF/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB923BMF)

description:
https://www.encodeproject.org/experiments/ENCSR876NYG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR876NYG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB923BMF

value: primary cell

value: male

value: 42 year

value: ENCBS538ZNZ at ENCODE; https://www.encodeproject.org/ENCBS538ZNZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB565GHB)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB565GHB
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB531DJR)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB531DJR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB860KZR)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB860KZR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB897SJT)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB897SJT
size range: 200-210

value: ENCBS767DPQ at ENCODE; https://www.encodeproject.org/ENCBS767DPQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB306IHU)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB306IHU
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB472UEQ)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB472UEQ
size range: 200-210

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB820JVD)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB820JVD
size range: 200-210

value: ATCC

value: ENCBS128QGA at ENCODE; https://www.encodeproject.org/ENCBS128QGA/


title: Flow-FISH CRISPR screen from K562 (ENCLB398TYN)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB398TYN
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB267FLM)

description:
https://www.encodeproject.org/experiments/ENCSR875IOR/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR875IOR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB267FLM
size range: 200-210

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB922IXD)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB922IXD
size range: 200-210

value: Jesse Engreitz, Stanford


title: Flow-FISH CRISPR screen from K562 (ENCLB178GCB)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB178GCB
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB682VHS)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB682VHS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB626CJU)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB626CJU
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB441OAS)

description:
https://www.encodeproject.org/experiments/ENCSR875BAF/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR875BAF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB441OAS
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB733HUP)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB733HUP
size range: 200-210

value: ENCBS797OAZ at ENCODE; https://www.encodeproject.org/ENCBS797OAZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB713HHW)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB713HHW
size range: 200-210

value: ENCBS943DQC at ENCODE; https://www.encodeproject.org/ENCBS943DQC/


title: Flow-FISH CRISPR screen from K562 (ENCLB384KPZ)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB384KPZ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB711CXV)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB711CXV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB316CBT)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB316CBT
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB417WUS)

description:
https://www.encodeproject.org/experiments/ENCSR870MGV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR870MGV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB417WUS

source_name: Homo sapiens female adult (37 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 37 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS442HAB at ENCODE; https://www.encodeproject.org/ENCBS442HAB/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB117FCM)

description:
https://www.encodeproject.org/experiments/ENCSR873VSJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873VSJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB117FCM

source_name: Homo sapiens female adult (33 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: primary cell

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS688YNC at ENCODE; https://www.encodeproject.org/ENCBS688YNC/


title: Flow-FISH CRISPR screen from K562 (ENCLB105NDM)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB105NDM
size range: 200-210

value: cell line

value: female

value: ATCC


title: DNase-seq from immature natural killer cell (ENCLB194AZC)

description:
https://www.encodeproject.org/experiments/ENCSR864YGM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR864YGM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB194AZC

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: male

value: 30 year

value: ENCBS855NHZ at ENCODE; https://www.encodeproject.org/ENCBS855NHZ/


title: DNase-seq from HUDEP-2 (ENCLB657HSM)

description:
https://www.encodeproject.org/experiments/ENCSR873CJI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873CJI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB657HSM

source_name: Homo sapiens HUDEP-2 cell line

value: adult

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS657HHY at ENCODE; https://www.encodeproject.org/ENCBS657HHY/


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB770SKW)

description:
https://www.encodeproject.org/experiments/ENCSR862SMY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR862SMY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB770SKW

source_name: Homo sapiens male adult (56 years) CD4-positive, CD25-positive, alpha-beta regulatory T primary cell

value: 56 year

value: John Stamatoyannopoulos, UW

value: ENCBS760KBS at ENCODE; https://www.encodeproject.org/ENCBS760KBS/


title: DNase-seq from HUDEP-2 (ENCLB985ZMW)

description:
https://www.encodeproject.org/experiments/ENCSR861FFY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR861FFY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB985ZMW

value: ENCBS035YPS at ENCODE; https://www.encodeproject.org/ENCBS035YPS/


title: DNase-seq from central memory CD4-positive, alpha-beta T cell (ENCLB853JGJ)

description:
https://www.encodeproject.org/experiments/ENCSR865TVC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR865TVC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB853JGJ

source_name: Homo sapiens female adult (33 years) central memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: 33 year

value: AllCells

value: ENCBS203RZO at ENCODE; https://www.encodeproject.org/ENCBS203RZO/


title: STARR-seq from K562 (ENCLB048PAD)

description:
https://www.encodeproject.org/experiments/ENCSR858MPS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR858MPS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR002ZDU
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB048PAD
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White, UChicago

value: ATCC

value: ENCBS869STC at ENCODE; https://www.encodeproject.org/ENCBS869STC/


title: Flow-FISH CRISPR screen from K562 (ENCLB583EFO)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB583EFO
size range: 200-210

value: adult

value: Jesse Engreitz, Stanford

value: ENCBS943DQC at ENCODE; https://www.encodeproject.org/ENCBS943DQC/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB221ZAH)

description:
https://www.encodeproject.org/experiments/ENCSR872SMV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR872SMV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB221ZAH

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS094OTN at ENCODE; https://www.encodeproject.org/ENCBS094OTN/


title: Flow-FISH CRISPR screen from BJAB (ENCLB810CDA)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB810CDA
size range: 200-210

source_name: Homo sapiens BJAB cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 4 ug/mL anti-CD40 for 4 hours, 10 ug/mL anti-IgM for 4 hours

value: BJAB

value: child

value: 5 year

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS377WXR at ENCODE; https://www.encodeproject.org/ENCBS377WXR/


title: Flow-FISH CRISPR screen from BJAB (ENCLB981DUR)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB981DUR
size range: 200-210

value: cell line

value: female

value: ENCBS604LZC at ENCODE; https://www.encodeproject.org/ENCBS604LZC/


title: Flow-FISH CRISPR screen from K562 (ENCLB852VJL)

description:
https://www.encodeproject.org/experiments/ENCSR873ROU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873ROU
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB852VJL
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC


title: proliferation CRISPR screen from K562 (ENCLB814DIJ)

description:
https://www.encodeproject.org/experiments/ENCSR398UPE/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR398UPE
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB814DIJ

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/cbb6ede0-0921-49ea-8eb9-609ec17f06cc/@@download/attachment/greenleaf_largescale_dhs_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: adult

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS978FOO at ENCODE; https://www.encodeproject.org/ENCBS978FOO/


title: DNase-seq from pancreas (ENCLB271FGV)

description:
https://www.encodeproject.org/experiments/ENCSR866MJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR866MJM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB271FGV

source_name: Homo sapiens female adult (47 years) pancreas tissue

value: pancreas

value: tissue

value: DM:yes; HTN:yes; CAD:no

value: 47 year

value: John Stamatoyannopoulos, UW

value: Yiing Lin, MD, PhD

value: ENCBS044VBJ at ENCODE; https://www.encodeproject.org/ENCBS044VBJ/


title: proliferation CRISPR screen from K562 (ENCLB410SWL)

description:
https://www.encodeproject.org/experiments/ENCSR377LWO/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR377LWO
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB410SWL

value: cell line

value: female

value: ENCBS110VZE at ENCODE; https://www.encodeproject.org/ENCBS110VZE/


title: Flow-FISH CRISPR screen from BJAB (ENCLB680LQG)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB680LQG
size range: 200-210

value: BJAB

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS604LZC at ENCODE; https://www.encodeproject.org/ENCBS604LZC/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB124XFH)

description:
https://www.encodeproject.org/experiments/ENCSR862VUK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR862VUK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB124XFH

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours

value: primary cell

value: male

value: adult

value: 42 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS245GJT at ENCODE; https://www.encodeproject.org/ENCBS245GJT/


title: Flow-FISH CRISPR screen from BJAB (ENCLB668RMR)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB668RMR
size range: 200-210

value: ATCC


title: proliferation CRISPR screen from K562 (ENCLB958ISI)

description:
https://www.encodeproject.org/experiments/ENCSR377LWO/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR377LWO
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB958ISI

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS566HIJ at ENCODE; https://www.encodeproject.org/ENCBS566HIJ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB167BRW)

description:
https://www.encodeproject.org/experiments/ENCSR862IXM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR862IXM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB167BRW

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS069GJJ at ENCODE; https://www.encodeproject.org/ENCBS069GJJ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB157WSW)

description:
https://www.encodeproject.org/experiments/ENCSR862IXM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR862IXM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB157WSW

value: primary cell

value: male

value: adult

value: ENCBS847VYH at ENCODE; https://www.encodeproject.org/ENCBS847VYH/


title: proliferation CRISPR screen from K562 (ENCLB661YBJ)

description:
https://www.encodeproject.org/experiments/ENCSR398UPE/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR398UPE
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB661YBJ

value: female

value: ENCBS864QWC at ENCODE; https://www.encodeproject.org/ENCBS864QWC/


title: DNase-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB682YAL)

description:
https://www.encodeproject.org/experiments/ENCSR856UND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR856UND
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-10-13
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB682YAL

source_name: Homo sapiens male adult (43 years) activated CD4 positive, naive alpha-beta T primary cell treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads

value: 43 year

value: Yijun Ruan, JAX

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody;

value: ENCBS620HRS at ENCODE; https://www.encodeproject.org/ENCBS620HRS/

value: Derived from ENCODE donor ENCDO791UJG; https://www.encodeproject.org/ENCDO791UJG/


title: proliferation CRISPR screen from K562 (ENCLB558QFM)

description:
https://www.encodeproject.org/experiments/ENCSR509FZL/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-MGA1-MGA2 sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR509FZL
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB558QFM

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS585LHK at ENCODE; https://www.encodeproject.org/ENCBS585LHK/


title: STARR-seq from K562 (ENCLB793EWZ)

description:
https://www.encodeproject.org/experiments/ENCSR858MPS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR858MPS
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR002ZDU
encode release date: 2020-06-11
lab: Kevin White, UChicago
library encode accession: ENCLB793EWZ
fragmentation methods: shearing (generic)
size range: 200-600

value: adult

value: Kevin White, UChicago

value: ATCC

value: ENCBS364ZTU at ENCODE; https://www.encodeproject.org/ENCBS364ZTU/


title: Flow-FISH CRISPR screen from BJAB (ENCLB199IYT)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB199IYT
size range: 200-210

value: BJAB

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS604LZC at ENCODE; https://www.encodeproject.org/ENCBS604LZC/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB855ISZ)

description:
https://www.encodeproject.org/experiments/ENCSR854HBF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR854HBF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB855ISZ

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS565NRF at ENCODE; https://www.encodeproject.org/ENCBS565NRF/


title: Flow-FISH CRISPR screen from BJAB (ENCLB470YSY)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB470YSY
size range: 200-210

value: cell line

value: ENCBS377WXR at ENCODE; https://www.encodeproject.org/ENCBS377WXR/


title: Flow-FISH CRISPR screen from BJAB (ENCLB307BLN)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB307BLN
size range: 200-210

value: ATCC


title: proliferation CRISPR screen from K562 (ENCLB133FED)

description:
https://www.encodeproject.org/experiments/ENCSR237VMX/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-WSR7EEE sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR237VMX
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB133FED

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS445GUQ at ENCODE; https://www.encodeproject.org/ENCBS445GUQ/


title: Flow-FISH CRISPR screen from BJAB (ENCLB574QWQ)

description:
https://www.encodeproject.org/experiments/ENCSR857QNP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR857QNP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB574QWQ
size range: 200-210

value: BJAB

value: female

value: child

value: 5 year

value: Jesse Engreitz, Stanford

value: treatment_term_name:anti-CD40; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_name:anti-IgM; treatment_type:antibody; duration:4; duration_units:hour;


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB328CRM)

description:
https://www.encodeproject.org/experiments/ENCSR854HBF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR854HBF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB328CRM

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS535GJC at ENCODE; https://www.encodeproject.org/ENCBS535GJC/


title: STARR-seq from pancreas (ENCLB851SKT)

description:
https://www.encodeproject.org/experiments/ENCSR948LAJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR948LAJ
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR256MBM
encode release date: 2022-07-26
lab: Kevin White, UChicago
library encode accession: ENCLB851SKT
fragmentation methods: shearing (generic)
size range: 200-600

source_name: Homo sapiens with pancreatic ductal adenocarcinoma; pancreas organoid genetically modified (episome) using transient transfection

value: pancreas

value: organoid

value: Pancreatic ductal adenocarcinoma

value: adult

value: 63 year

value: Kevin White, UChicago

value: Kevin White

value: ENCBS620KPH at ENCODE; https://www.encodeproject.org/ENCBS620KPH/


title: proliferation CRISPR screen from K562 (ENCLB046TFT)

description:
https://www.encodeproject.org/experiments/ENCSR839FIS/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for dCas9-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR839FIS
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB046TFT

extract_protocol:
general protocol: https://www.encodeproject.org/documents/984d153c-01b8-4387-9432-0a8d906288bc/@@download/attachment/greenleaf_effector_batch_tiling_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS059DKW at ENCODE; https://www.encodeproject.org/ENCBS059DKW/


title: Flow-FISH CRISPR screen from K562 (ENCLB387WZF)

description:
https://www.encodeproject.org/experiments/ENCSR856ZPR/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR856ZPR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB387WZF
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS543OYJ at ENCODE; https://www.encodeproject.org/ENCBS543OYJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB725COE)

description:
https://www.encodeproject.org/experiments/ENCSR851UJM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR851UJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB725COE
size range: 200-210

value: ENCBS672KSB at ENCODE; https://www.encodeproject.org/ENCBS672KSB/


title: proliferation CRISPR screen from K562 (ENCLB451DLU)

description:
https://www.encodeproject.org/experiments/ENCSR546ILA/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR546ILA
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB451DLU

value: adult

value: ENCBS215IBV at ENCODE; https://www.encodeproject.org/ENCBS215IBV/


title: proliferation CRISPR screen from K562 (ENCLB755WFS)

description:
https://www.encodeproject.org/experiments/ENCSR546ILA/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-RYBP sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR546ILA
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB755WFS

value: ENCBS895RPI at ENCODE; https://www.encodeproject.org/ENCBS895RPI/


title: Flow-FISH CRISPR screen from K562 (ENCLB564PMO)

description:
https://www.encodeproject.org/experiments/ENCSR856ZPR/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR856ZPR
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB564PMO
size range: 200-210


title: proliferation CRISPR screen from K562 (ENCLB187JFQ)

description:
https://www.encodeproject.org/experiments/ENCSR294JZL/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for dCas9 tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR294JZL
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB187JFQ

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPR dCas (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

value: ENCBS190BYF at ENCODE; https://www.encodeproject.org/ENCBS190BYF/


title: proliferation CRISPR screen from K562 (ENCLB289USB)

description:
https://www.encodeproject.org/experiments/ENCSR509FZL/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for CRISPRi/dCas9-KRAB-MGA1-MGA2 sparse-tiling proliferation screens at ~7500 cCREs around ~450 essential genes in K562
experiment encode accession: ENCSR509FZL
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB289USB

value: ENCBS333TCO at ENCODE; https://www.encodeproject.org/ENCBS333TCO/


title: Flow-FISH CRISPR screen from K562 (ENCLB223VGQ)

description:
https://www.encodeproject.org/experiments/ENCSR851UJM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR851UJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB223VGQ
size range: 200-210

value: cell line


title: proliferation CRISPR screen from K562 (ENCLB754FHX)

description:
https://www.encodeproject.org/experiments/ENCSR013IWY/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for dCas9-KRAB-WSR7EEE/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR013IWY
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB754FHX

value: female

value: ENCBS683DOV at ENCODE; https://www.encodeproject.org/ENCBS683DOV/


title: proliferation CRISPR screen from K562 (ENCLB750ZYY)

description:
https://www.encodeproject.org/experiments/ENCSR007UZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for dCas9-ZNF705-KRAB/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR007UZQ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB750ZYY

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS006PAM at ENCODE; https://www.encodeproject.org/ENCBS006PAM/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB783MFR)

description:
https://www.encodeproject.org/experiments/ENCSR851DQZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR851DQZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB783MFR

value: primary cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS488EIA at ENCODE; https://www.encodeproject.org/ENCBS488EIA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB368FWV)

description:
https://www.encodeproject.org/experiments/ENCSR850JHZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR850JHZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB368FWV

source_name: Homo sapiens female adult (39 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: adult

value: 39 year

value: Shelly Heimfeld

value: ENCBS005CUQ at ENCODE; https://www.encodeproject.org/ENCBS005CUQ/


title: DNase-seq from NCI-H889 (ENCLB336YOE)

description:
https://www.encodeproject.org/experiments/ENCSR850GGK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR850GGK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB336YOE

source_name: Homo sapiens NCI-H889 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: female

value: 69 year

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS405IWP at ENCODE; https://www.encodeproject.org/ENCBS405IWP/


title: proliferation CRISPR screen from K562 (ENCLB049XJY)

description:
https://www.encodeproject.org/experiments/ENCSR039ZOS/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for dCas9-RYBP/CRISPRi tiling proliferation screens at a subset of cCREs around essential genes
experiment encode accession: ENCSR039ZOS
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB049XJY

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS611WFY at ENCODE; https://www.encodeproject.org/ENCBS611WFY/


title: CRISPR screen from WTC11 (ENCLB026BWR)

description:
https://www.encodeproject.org/experiments/ENCSR380RDA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR380RDA
assay title: CRISPR screen
possible controls: ENCSR161WWK
encode release date: 2023-09-12
lab: Bing Ren, UCSD
library encode accession: ENCLB026BWR
fragmentation methods: chemical (Illumina TruSeq)
size range: 710-720

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time

value: male

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS184OPZ at ENCODE; https://www.encodeproject.org/ENCBS184OPZ/