title: snRNA-seq from adrenal gland (ENCLB016URT)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 5
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB016URT

value: B6/Cast F1 adrenal P4 male 1

value: ENCBS865NYD at ENCODE; https://www.encodeproject.org/ENCBS865NYD/


title: AML SU462, WGBS

status: Public on Mar 06 2026

type: SRA

city: Baltimore

first: Andrew

middle: P

last: Feinberg

state: MD

address: 855 North Wolfe Street

department: Center for Epigenetics

country: USA

institute: Johns Hopkins University

description: Library name: SU462_WGBS

library_source: genomic

data_processing:
Following DNA sequencing, fastq files were trimmed using TrimGalore. Trimmed reads were aligned to the hg19 genome using Bismark. Samtools was used to merge, sort, and deduplicate bam files. Finally, the informME analysis pipeline was applied to quantify methylation stochasticity within individual samples and to compare methylation stochasticity between samples.
Assembly: hg19
Supplementary files format and content: bigwig format. Tracks include mean methylation level (MML), normalized methylation entropy (NME), and Jensen Shannon Distance (JSD) to measure methylation stochasticity between samples.
Supplementary files format and content: Processed data for AML samples and normal CD34+ and GMP controls includes comparison to WGBS data from a previously published LMPP sample (GSM4036933).

molecule: genomic DNA

organism: Homo sapiens

source_name: Primary acute myeloid leukemia

extract_protocol:
Primary AML samples were collected from peripheral blood or bone marrow.
WGBS libraries for CMP and MEP normal controls were generated using the IDT Methyl-Seq Kit. For primary AML samples, and CD34+ and GMP normal controls, WGBS libraries were generated using NEBNext Ultra DNA library Prep kit for Illumina according to the manufacturer's instructions with modifications. Input gDNA was spiked with 1% unmethylated Lambda DNA (Promega) to monitor bisulfite conversion efficiency. Size selection was performed using SPRIselect beads and insert sizes of 300-400bp were isolated. Samples were bisulfite converted after size selection using EZ DNA Methylation-Lightning Kit (Zymo). Libraries were sequenced on an Illumina HiSeq4000 or NovaSeq6000 instruments.

tag: tissue

value: Primary acute myeloid leukemia

tag: genotype

value: TET2 mutation


title: snRNA-seq from adrenal gland (ENCLB288MRT)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 2
technical replicate number: 5
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB288MRT

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Mus musculus

source_name: Mus musculus strain B6CASTF1/J male postnatal (4 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: tissue

tag: description

value: B6/Cast F1 adrenal P4 male 2

tag: biosample encode accession

tag: Sex

value: male

tag: dev stage

value: postnatal

tag: age

value: 4 day

tag: lab

value: Ali Mortazavi, UCI

tag: subcellular fraction term name

value: nucleus

tag: source

value: The Jackson Laboratory

tag: link

value: ENCBS112ZTO at ENCODE; https://www.encodeproject.org/ENCBS112ZTO/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: AML SU504, WGBS

description: Library name: SU504_WGBS

value: CEBPA mutation


title: AML SU344, WGBS

description: Library name: SU344_WGBS

value: DNMT3A mutation


title: AML SU270, WGBS

description: Library name: SU270_WGBS


title: snRNA-seq from adrenal gland (ENCLB487UMS)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 2
technical replicate number: 6
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB487UMS


title: AML SU214, WGBS

description: Library name: SU214_WGBS


title: AML SU048, WGBS

description: Library name: SU048_WGBS


title: GMP-1, scRNA-seq

library_source: transcriptomic single cell

data_processing:
For each cell analyzed, paired-end reads were mapped to human genome hg38 using Cell Ranger (10x Genomics) for scRNA-seq or Cell Ranger Arc for single-cell multiomics.
For the single-omic scRNA-seq data, cells with number of non-zero genes larger than 1,000; number of reads less than 60,000; and percentage of mitochondria reads less than 25% were retained.
For the multi-omic data, cells were retained if: number of reads larger than 5,000 but smaller than 100,000 from the scATAC-seq data modality; number of reads larger than 1,000 but smaller than 100,000 from the scRNA-seq data modality; and the percentage of mitochondria reads less than 30%.
The gene expression data were then normalized and log-transformed using the R package Seurat.
Samples from different patients or technologies (single or multi-omics) were integrated using Harmony based on the gene expression data.
Assembly: hg38
Supplementary files format and content: Tab-separated files (tsv) containing log-normalized count data.

molecule: polyA RNA

source_name: CD34+ GMP cells

extract_protocol:
Cryopreserved samples were used to generate a single cell suspension (for scRNA-seq) or a single nuclei suspension (for single-cell Multiome, according to protocol Nuclei Isolation for Single Cell Multiome ATAC + Gene Expression Sequencing [10x Genomics]). Single cells (for scRNA-seq) or nuclei (for scMultiome ATAC+Gene Expression) were captured on a 10x Chromium Controller instrument according to manufacturer instructions.
Libraries were generated using Chromium NextGEM Single-cell 3’ Gene Expression reagents (for scRNA-seq) or using the Chromium Next GEM Single-cell Multiome ATAC + Gene Expression reagents (for scMultiome). Quality control on intermediate products and final libraries was performed using the Agilent Bioanalyzer High Sensitivity Kit. The final libraries were quantified via qPCR using KAPA Library Quantification Kits. A spike-in of 1% PhiX control library (Illumina) was used as the technical control.

value: Sorted normal GMP

value: Normal GMP


title: snRNA-seq from adrenal gland (ENCLB816NAV)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB816NAV

value: B6/Cast F1 adrenal P4 male 1

value: ENCBS865NYD at ENCODE; https://www.encodeproject.org/ENCBS865NYD/


title: snRNA-seq from adrenal gland (ENCLB221HSZ)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB221HSZ

value: adrenal gland


title: AML SU204, WGBS

description: Library name: SU204_WGBS

value: Primary acute myeloid leukemia

value: TET2 mutation


title: AML SU209, WGBS

description: Library name: SU209_WGBS


title: snRNA-seq from adrenal gland (ENCLB327FIL)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB327FIL

value: tissue

value: male


title: CD34-2, scRNA-seq

source_name: Bone marrow derived CD34+ Stem/Progenitor cells

value: Normal CD34+


title: snRNA-seq from left cerebral cortex (ENCLB197WGP)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB197WGP

source_name: Mus musculus strain B6CASTF1/J male adult (8 months) left cerebral cortex tissue nuclear fraction

value: left cerebral cortex

value: B6/Cast F1 cortex P8mo male 2

value: adult

value: 8 month

value: Ali Mortazavi, UCI

value: ENCBS221WCD at ENCODE; https://www.encodeproject.org/ENCBS221WCD/


title: snRNA-seq from adrenal gland (ENCLB083BWB)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB083BWB

value: B6/Cast F1 adrenal P4 male 2

value: postnatal

value: 4 day

value: nucleus

value: The Jackson Laboratory

value: ENCBS112ZTO at ENCODE; https://www.encodeproject.org/ENCBS112ZTO/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from gastrocnemius (ENCLB753SMP)

description:
https://www.encodeproject.org/experiments/ENCSR161BNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 1k
experiment encode accession: ENCSR161BNJ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB753SMP
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (25 days) gastrocnemius tissue nuclear fraction

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P25 female 1

value: female

value: 25 day

value: ENCBS002BZK at ENCODE; https://www.encodeproject.org/ENCBS002BZK/


title: snRNA-seq from adrenal gland (ENCLB960GYI)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 6
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB960GYI

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P4 male 1

value: male

value: ENCBS865NYD at ENCODE; https://www.encodeproject.org/ENCBS865NYD/


title: CD34-1, WGBS

description: Library name: CD34-1_WGBS

source_name: Bone marrow derived CD34+ Stem/Progenitor

value: Normal CD34+


title: snRNA-seq from gastrocnemius (ENCLB177TVC)

description:
https://www.encodeproject.org/experiments/ENCSR161BNJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P25 female normal 1k
experiment encode accession: ENCSR161BNJ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB177TVC
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: B6/Cast F1 gastrocnemius P25 female 2

value: postnatal

value: Ali Mortazavi, UCI

value: ENCBS884WOI at ENCODE; https://www.encodeproject.org/ENCBS884WOI/


title: AML SU344, scRNA-seq

value: Primary acute myeloid leukemia

value: DNMT3A mutation


title: snRNA-seq from adrenal gland (ENCLB647HGC)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB647HGC

value: 4 day

value: nucleus

value: The Jackson Laboratory

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from adrenal gland (ENCLB454GCY)

description:
https://www.encodeproject.org/experiments/ENCSR165FLF/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 adrenal P4 male normal 12k
experiment encode accession: ENCSR165FLF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB454GCY

value: B6/Cast F1 adrenal P4 male 2

value: ENCBS112ZTO at ENCODE; https://www.encodeproject.org/ENCBS112ZTO/


title: snRNA-seq from left cerebral cortex (ENCLB414MRM)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 4
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB414MRM

value: left cerebral cortex

value: tissue

value: B6/Cast F1 cortex P8mo male 2

value: adult

value: 8 month

value: ENCBS221WCD at ENCODE; https://www.encodeproject.org/ENCBS221WCD/


title: AML SU270, scRNA-seq

value: TET2 mutation


title: CD34-1, scRNA-seq

value: Bone marrow derived CD34+ Stem/Progenitor

value: Normal CD34+


title: AML SU504 Replicate 1, scRNA-seq

description: SU504 was sequenced with scRNA-seq single-omics and single-cell multiome sequencing (Biological replicates). This record contains scRNA-seq single-omics data.

value: Primary acute myeloid leukemia

value: CEBPA mutation


title: snRNA-seq from left cerebral cortex (ENCLB827DWK)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 5
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB827DWK

value: male

value: Ali Mortazavi, UCI


title: AML SU214 Replicate 1, scRNA-seq

description: SU214 was sequenced with scRNA-seq single-omics and single-cell multiome sequencing (Biological replicates). This record contains scRNA-seq single-omics data.

value: DNMT3A mutation


title: AML SU204, scRNA-seq


title: AML SU070, WGBS

description: Library name: SU070_WGBS


title: AML SU462, scRNA-seq


title: snRNA-seq from left cerebral cortex (ENCLB795KVI)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB795KVI

value: B6/Cast F1 cortex P8mo male 1

value: nucleus

value: The Jackson Laboratory

value: ENCBS684EYE at ENCODE; https://www.encodeproject.org/ENCBS684EYE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from left cerebral cortex (ENCLB974EVT)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB974EVT

value: left cerebral cortex

value: tissue


title: snRNA-seq from left cerebral cortex (ENCLB601FXL)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 3
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB601FXL

value: B6/Cast F1 cortex P8mo male 2

value: adult

value: 8 month


title: AML SU070, scRNA-seq

value: TET2 mutation


title: snRNA-seq from left cerebral cortex (ENCLB532WDH)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB532WDH


title: snRNA-seq from left cerebral cortex (ENCLB257CXI)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB257CXI

value: ENCBS221WCD at ENCODE; https://www.encodeproject.org/ENCBS221WCD/


title: AML SU048, scRNA-seq

value: Primary acute myeloid leukemia


title: snRNA-seq from left cerebral cortex (ENCLB796CWD)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 2
technical replicate number: 6
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB796CWD


title: snRNA-seq from left cerebral cortex (ENCLB587JIG)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 6
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB587JIG


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCLB908HVD)

description:
https://www.encodeproject.org/experiments/ENCSR697CSS/
***************
biological replicate number: 1
technical replicate number: 1
description: Rush brain E2728434
experiment encode accession: ENCSR697CSS
assay title: long read RNA-seq
assembly: GRCh38, T2T-CHM13
encode release date: 2025-09-13
lab: Ali Mortazavi, UCI
library encode accession: ENCLB908HVD
nucleic acid starting quantity: 2136
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (85 years) middle frontal area 46 tissue

value: dorsolateral prefrontal cortex

value: female

value: 85 year

value: Barbara Wold, Caltech

value: Rush University

value: ENCBS166GKO at ENCODE; https://www.encodeproject.org/ENCBS166GKO/

value: Derived from ENCODE donor ENCDO741DAO; https://www.encodeproject.org/ENCDO741DAO/


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCLB857WGB)

description:
https://www.encodeproject.org/experiments/ENCSR543NWW/
***************
biological replicate number: 1
technical replicate number: 1
description: Rush brain E2842953
experiment encode accession: ENCSR543NWW
assay title: long read RNA-seq
assembly: GRCh38, T2T-CHM13
encode release date: 2025-09-13
lab: Ali Mortazavi, UCI
library encode accession: ENCLB857WGB
nucleic acid starting quantity: 2358
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (86 years) with Alzheimer's disease; middle frontal area 46 tissue

value: 86 year

value: ENCBS048EXC at ENCODE; https://www.encodeproject.org/ENCBS048EXC/

value: Derived from ENCODE donor ENCDO997SGX; https://www.encodeproject.org/ENCDO997SGX/


title: snRNA-seq from left cerebral cortex (ENCLB966PBA)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 5
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB966PBA

value: left cerebral cortex

value: tissue

value: B6/Cast F1 cortex P8mo male 1

value: male

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS684EYE at ENCODE; https://www.encodeproject.org/ENCBS684EYE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from substantia nigra (ENCLB173DDG)

description:
https://www.encodeproject.org/experiments/ENCSR995IED/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR995IED
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB173DDG

source_name: Homo sapiens male adult substantia nigra tissue

value: substantia nigra

tag: encode accession

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS417EGL at ENCODE; https://www.encodeproject.org/ENCBS417EGL/


title: snRNA-seq from gastrocnemius (ENCLB064HGO)

description:
https://www.encodeproject.org/experiments/ENCSR160AKB/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 2k
experiment encode accession: ENCSR160AKB
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB064HGO
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (14 days) gastrocnemius tissue nuclear fraction

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P14 male 1

value: postnatal

value: 14 day

value: ENCBS085JPI at ENCODE; https://www.encodeproject.org/ENCBS085JPI/


title: snRNA-seq from left cerebral cortex (ENCLB687SMG)

description:
https://www.encodeproject.org/experiments/ENCSR160FFZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 2k
experiment encode accession: ENCSR160FFZ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB687SMG
nucleic acid starting quantity: 125
nucleic acid starting quantity units: cells

value: left cerebral cortex

value: tissue

value: B6/Cast F1 cortex P8mo male 2

value: male

value: 8 month

value: ENCBS221WCD at ENCODE; https://www.encodeproject.org/ENCBS221WCD/


title: snRNA-seq from gastrocnemius (ENCLB647DIU)

description:
https://www.encodeproject.org/experiments/ENCSR150KKS/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 15k
experiment encode accession: ENCSR150KKS
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB647DIU

source_name: Mus musculus strain B6CASTF1/J male adult (2 months) gastrocnemius tissue nuclear fraction

value: B6/Cast F1 gastrocnemius P2mo male 2

value: 2 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS471TDE at ENCODE; https://www.encodeproject.org/ENCBS471TDE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from gastrocnemius (ENCLB914VRR)

description:
https://www.encodeproject.org/experiments/ENCSR160AKB/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P14 male normal 2k
experiment encode accession: ENCSR160AKB
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB914VRR
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P14 male 2

value: ENCBS759QMD at ENCODE; https://www.encodeproject.org/ENCBS759QMD/


title: DNase-seq from hypothalamus (ENCLB505LYG)

description:
https://www.encodeproject.org/experiments/ENCSR991AEE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR991AEE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB505LYG

source_name: Homo sapiens female adult hypothalamus tissue

value: hypothalamus

value: female

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS827TER at ENCODE; https://www.encodeproject.org/ENCBS827TER/


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCLB028KOH)

description:
https://www.encodeproject.org/experiments/ENCSR872GND/
***************
biological replicate number: 1
technical replicate number: 1
description: Rush brain E6264119
experiment encode accession: ENCSR872GND
assay title: long read RNA-seq
assembly: GRCh38, T2T-CHM13
encode release date: 2025-09-13
lab: Ali Mortazavi, UCI
library encode accession: ENCLB028KOH
nucleic acid starting quantity: 2704
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (90 or above years) with Alzheimer's disease; middle frontal area 46 tissue

value: dorsolateral prefrontal cortex

value: tissue

value: 90 or above year

value: Barbara Wold, Caltech

value: Rush University

value: ENCBS801JBH at ENCODE; https://www.encodeproject.org/ENCBS801JBH/

value: Derived from ENCODE donor ENCDO020MJV; https://www.encodeproject.org/ENCDO020MJV/


title: AML SU050, scRNA-seq

value: Primary acute myeloid leukemia

value: IDH1/2 mutation


title: snRNA-seq from left cerebral cortex (ENCLB215SOV)

description:
https://www.encodeproject.org/experiments/ENCSR160VMU/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 12k
experiment encode accession: ENCSR160VMU
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB215SOV

value: left cerebral cortex

value: B6/Cast F1 cortex P8mo male 1

value: male

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS684EYE at ENCODE; https://www.encodeproject.org/ENCBS684EYE/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: AML SU209, scRNA-seq

value: TET2 mutation


title: DNase-seq from hypothalamus (ENCLB539OUR)

description:
https://www.encodeproject.org/experiments/ENCSR990VCR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR990VCR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB539OUR

value: hypothalamus

value: tissue

value: female

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS409IFH at ENCODE; https://www.encodeproject.org/ENCBS409IFH/


title: snRNA-seq from gastrocnemius (ENCLB231VZQ)

description:
https://www.encodeproject.org/experiments/ENCSR150KKS/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 15k
experiment encode accession: ENCSR150KKS
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB231VZQ

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P2mo male 2

value: 2 month

value: ENCBS471TDE at ENCODE; https://www.encodeproject.org/ENCBS471TDE/


title: DNase-seq from putamen (ENCLB347PYE)

description:
https://www.encodeproject.org/experiments/ENCSR987WIW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR987WIW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB347PYE

source_name: Homo sapiens female adult putamen tissue

value: putamen

value: ENCBS033HJR at ENCODE; https://www.encodeproject.org/ENCBS033HJR/


title: snRNA-seq from left cerebral cortex (ENCLB831TSZ)

description:
https://www.encodeproject.org/experiments/ENCSR160FFZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P8mo male 8mo 2k
experiment encode accession: ENCSR160FFZ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB831TSZ
nucleic acid starting quantity: 125
nucleic acid starting quantity units: cells

value: left cerebral cortex

value: B6/Cast F1 cortex P8mo male 1

value: male

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS684EYE at ENCODE; https://www.encodeproject.org/ENCBS684EYE/


title: snRNA-seq from gastrocnemius (ENCLB163UUM)

description:
https://www.encodeproject.org/experiments/ENCSR150KKS/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 15k
experiment encode accession: ENCSR150KKS
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB163UUM

value: tissue

value: B6/Cast F1 gastrocnemius P2mo male 1

value: adult

value: ENCBS884VMI at ENCODE; https://www.encodeproject.org/ENCBS884VMI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from cerebellum (ENCLB160BOP)

description:
https://www.encodeproject.org/experiments/ENCSR986SNR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR986SNR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB160BOP

source_name: Homo sapiens female adult cerebellum tissue

value: cerebellum

value: female

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS582ICX at ENCODE; https://www.encodeproject.org/ENCBS582ICX/


title: DNase-seq from nucleus accumbens (ENCLB780SEX)

description:
https://www.encodeproject.org/experiments/ENCSR990LQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR990LQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB780SEX

source_name: Homo sapiens male adult nucleus accumbens tissue

value: nucleus accumbens

value: male

value: ENCBS262PVC at ENCODE; https://www.encodeproject.org/ENCBS262PVC/


title: snRNA-seq from adrenal gland (ENCLB943ALJ)

description:
https://www.encodeproject.org/experiments/ENCSR148VQR/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 adrenal P25 male normal 2k
experiment encode accession: ENCSR148VQR
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB943ALJ
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (25 days) adrenal gland tissue nuclear fraction

value: adrenal gland

value: B6/Cast F1 adrenal P25 male 2

value: postnatal

value: 25 day

value: Ali Mortazavi, UCI

value: nucleus

value: ENCBS683KKF at ENCODE; https://www.encodeproject.org/ENCBS683KKF/


title: long read RNA-seq from dorsolateral prefrontal cortex (ENCLB787XJK)

description:
https://www.encodeproject.org/experiments/ENCSR111GJE/
***************
biological replicate number: 1
technical replicate number: 1
description: Rush brain E9867116
experiment encode accession: ENCSR111GJE
assay title: long read RNA-seq
assembly: GRCh38, T2T-CHM13
encode release date: 2025-09-13
lab: Ali Mortazavi, UCI
library encode accession: ENCLB787XJK
nucleic acid starting quantity: 2322
nucleic acid starting quantity units: ng

source_name: Homo sapiens female adult (90 or above years) middle frontal area 46 tissue

value: dorsolateral prefrontal cortex

value: tissue

value: adult

value: 90 or above year

value: Barbara Wold, Caltech

value: Rush University

value: ENCBS253LWF at ENCODE; https://www.encodeproject.org/ENCBS253LWF/

value: Derived from ENCODE donor ENCDO242JQO; https://www.encodeproject.org/ENCDO242JQO/


title: snRNA-seq from gastrocnemius (ENCLB316WLU)

description:
https://www.encodeproject.org/experiments/ENCSR150KKS/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo male normal 15k
experiment encode accession: ENCSR150KKS
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB316WLU

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P2mo male 1

value: male

value: 2 month

value: The Jackson Laboratory

value: ENCBS884VMI at ENCODE; https://www.encodeproject.org/ENCBS884VMI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from anterior cingulate cortex (ENCLB133TVJ)

description:
https://www.encodeproject.org/experiments/ENCSR984VJY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984VJY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB133TVJ

source_name: Homo sapiens male adult anterior cingulate cortex tissue

value: anterior cingulate cortex

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS923SVC at ENCODE; https://www.encodeproject.org/ENCBS923SVC/


title: snRNA-seq from adrenal gland (ENCLB793ZEJ)

description:
https://www.encodeproject.org/experiments/ENCSR148VQR/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 adrenal P25 male normal 2k
experiment encode accession: ENCSR148VQR
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB793ZEJ
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

value: adrenal gland

value: tissue

value: B6/Cast F1 adrenal P25 male 1

value: postnatal

value: 25 day

value: Ali Mortazavi, UCI

value: nucleus

value: ENCBS826WGQ at ENCODE; https://www.encodeproject.org/ENCBS826WGQ/


title: snRNA-seq from heart (ENCLB344JOU)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB344JOU

source_name: Mus musculus strain B6CASTF1/J male adult (18-20 months) heart tissue nuclear fraction

value: heart

value: B6/Cast F1 heart P18-20mo male 2

value: male

value: adult

value: 18-20 month

value: ENCBS332NCN at ENCODE; https://www.encodeproject.org/ENCBS332NCN/


title: DNase-seq from amygdala (ENCLB800JHH)

description:
https://www.encodeproject.org/experiments/ENCSR993RWL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR993RWL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB800JHH

source_name: Homo sapiens female adult amygdala tissue

value: amygdala

value: female

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS436FOY at ENCODE; https://www.encodeproject.org/ENCBS436FOY/


title: DNase-seq from amygdala (ENCLB222YNJ)

description:
https://www.encodeproject.org/experiments/ENCSR984UNI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR984UNI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB222YNJ

value: tissue

value: Kristin Ardlie

value: ENCBS934XIO at ENCODE; https://www.encodeproject.org/ENCBS934XIO/


title: snRNA-seq from heart (ENCLB251CUK)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB251CUK

value: Ali Mortazavi, UCI

value: The Jackson Laboratory

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from heart (ENCLB073QRO)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB073QRO

value: heart

value: B6/Cast F1 heart P18-20mo male 1

value: nucleus

value: ENCBS825VRD at ENCODE; https://www.encodeproject.org/ENCBS825VRD/


title: snRNA-seq from heart (ENCLB241AKT)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB241AKT

value: male

value: adult

value: 18-20 month


title: DNase-seq from hypothalamus (ENCLB628GOO)

description:
https://www.encodeproject.org/experiments/ENCSR982BCS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982BCS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB628GOO

source_name: Homo sapiens male adult hypothalamus tissue

value: hypothalamus

value: ENCBS076SOW at ENCODE; https://www.encodeproject.org/ENCBS076SOW/


title: DNase-seq from putamen (ENCLB916AXR)

description:
https://www.encodeproject.org/experiments/ENCSR978NIK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR978NIK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB916AXR

value: putamen

value: female

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS719PJX at ENCODE; https://www.encodeproject.org/ENCBS719PJX/


title: snRNA-seq from heart (ENCLB385MCZ)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB385MCZ

value: tissue

value: Ali Mortazavi, UCI


title: DNase-seq from hypothalamus (ENCLB723AQN)

description:
https://www.encodeproject.org/experiments/ENCSR980PSM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR980PSM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB723AQN

value: Kristin Ardlie

value: ENCBS535BRZ at ENCODE; https://www.encodeproject.org/ENCBS535BRZ/


title: snRNA-seq from heart (ENCLB850WUF)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 2
technical replicate number: 3
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB850WUF

value: heart

value: B6/Cast F1 heart P18-20mo male 2

value: The Jackson Laboratory

value: ENCBS332NCN at ENCODE; https://www.encodeproject.org/ENCBS332NCN/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB527JIB)

description:
https://www.encodeproject.org/experiments/ENCSR985SKP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR985SKP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB527JIB

source_name: Homo sapiens female adult dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: adult

value: ENCBS400ERC at ENCODE; https://www.encodeproject.org/ENCBS400ERC/


title: DNase-seq from anterior cingulate cortex (ENCLB398NWC)

description:
https://www.encodeproject.org/experiments/ENCSR975CBO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR975CBO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB398NWC

source_name: Homo sapiens female adult anterior cingulate cortex tissue

value: anterior cingulate cortex

value: ENCBS522AYL at ENCODE; https://www.encodeproject.org/ENCBS522AYL/


title: snRNA-seq from heart (ENCLB355VJT)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 6
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB355VJT

source_name: Mus musculus strain B6CASTF1/J female adult (8 months) heart tissue nuclear fraction

value: B6/Cast F1 heart P8mo female 1

value: female

value: 8 month

value: nucleus

value: ENCBS337YRQ at ENCODE; https://www.encodeproject.org/ENCBS337YRQ/


title: snRNA-seq from heart (ENCLB766VDZ)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 2
technical replicate number: 4
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB766VDZ

value: tissue

value: male

value: 18-20 month

value: Ali Mortazavi, UCI


title: DNase-seq from Ammon's horn (ENCLB329NXI)

description:
https://www.encodeproject.org/experiments/ENCSR970TQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR970TQP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329NXI

source_name: Homo sapiens female adult Ammon's horn tissue

value: Ammon's horn

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS470YBD at ENCODE; https://www.encodeproject.org/ENCBS470YBD/


title: snRNA-seq from heart (ENCLB134PXT)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 3
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB134PXT

value: heart

value: B6/Cast F1 heart P8mo female 2

value: adult

value: The Jackson Laboratory

value: ENCBS858VQI at ENCODE; https://www.encodeproject.org/ENCBS858VQI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from cerebellum (ENCLB974QKI)

description:
https://www.encodeproject.org/experiments/ENCSR972WHM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR972WHM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB974QKI

value: cerebellum

value: female

value: ENCBS852GWU at ENCODE; https://www.encodeproject.org/ENCBS852GWU/


title: snRNA-seq from heart (ENCLB890HPO)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 6
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB890HPO

value: tissue

value: 8 month

value: nucleus


title: DNase-seq from caudate nucleus (ENCLB877MSZ)

description:
https://www.encodeproject.org/experiments/ENCSR971MCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR971MCN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB877MSZ

source_name: Homo sapiens female adult caudate nucleus tissue

value: caudate nucleus

value: ENCBS712IQQ at ENCODE; https://www.encodeproject.org/ENCBS712IQQ/


title: DNase-seq from amygdala (ENCLB097IRQ)

description:
https://www.encodeproject.org/experiments/ENCSR982NZD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982NZD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB097IRQ

value: amygdala

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS309ZYZ at ENCODE; https://www.encodeproject.org/ENCBS309ZYZ/


title: snRNA-seq from heart (ENCLB035AKU)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB035AKU

value: heart

value: B6/Cast F1 heart P8mo female 1

value: Ali Mortazavi, UCI

value: ENCBS337YRQ at ENCODE; https://www.encodeproject.org/ENCBS337YRQ/


title: DNase-seq from substantia nigra (ENCLB423NXW)

description:
https://www.encodeproject.org/experiments/ENCSR969JSD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR969JSD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB423NXW

source_name: Homo sapiens male adult substantia nigra tissue

value: substantia nigra

value: male

value: adult

value: Kristin Ardlie

value: ENCBS947VLS at ENCODE; https://www.encodeproject.org/ENCBS947VLS/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB031LTW)

description:
https://www.encodeproject.org/experiments/ENCSR982XHY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982XHY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB031LTW

source_name: Homo sapiens male adult dorsolateral prefrontal cortex tissue

value: dorsolateral prefrontal cortex

value: tissue

value: ENCBS587ZLE at ENCODE; https://www.encodeproject.org/ENCBS587ZLE/


title: snRNA-seq from heart (ENCLB956YIJ)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 5
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB956YIJ

value: B6/Cast F1 heart P8mo female 2

value: female

value: 8 month

value: nucleus

value: The Jackson Laboratory

value: ENCBS858VQI at ENCODE; https://www.encodeproject.org/ENCBS858VQI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from heart (ENCLB004DVE)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB004DVE

value: heart

value: B6/Cast F1 heart P8mo female 1

value: Ali Mortazavi, UCI


title: snRNA-seq from heart (ENCLB750PAB)

description:
https://www.encodeproject.org/experiments/ENCSR147TEP/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 heart P18-20mo male normal 12k
experiment encode accession: ENCSR147TEP
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB750PAB

value: B6/Cast F1 heart P18-20mo male 1

value: male

value: 18-20 month

value: ENCBS825VRD at ENCODE; https://www.encodeproject.org/ENCBS825VRD/


title: DNase-seq from cerebellum (ENCLB263EKT)

description:
https://www.encodeproject.org/experiments/ENCSR966ZIA/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR966ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB263EKT

value: cerebellum

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS839FDK at ENCODE; https://www.encodeproject.org/ENCBS839FDK/


title: DNase-seq from cerebellum (ENCLB040BKR)

description:
https://www.encodeproject.org/experiments/ENCSR966ZIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040BKR

value: tissue

value: female

value: ENCBS596WPN at ENCODE; https://www.encodeproject.org/ENCBS596WPN/


title: snRNA-seq from heart (ENCLB133EUP)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB133EUP

value: B6/Cast F1 heart P8mo female 2

value: 8 month

value: nucleus

value: The Jackson Laboratory

value: ENCBS858VQI at ENCODE; https://www.encodeproject.org/ENCBS858VQI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from heart (ENCLB939RMD)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB939RMD

value: heart

value: B6/Cast F1 heart P8mo female 1

value: Ali Mortazavi, UCI

value: ENCBS337YRQ at ENCODE; https://www.encodeproject.org/ENCBS337YRQ/


title: DNase-seq from putamen (ENCLB168LEH)

description:
https://www.encodeproject.org/experiments/ENCSR966NTE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966NTE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB168LEH

source_name: Homo sapiens male adult putamen tissue

value: putamen

value: male

value: adult

value: unknown

value: ENCBS631BWD at ENCODE; https://www.encodeproject.org/ENCBS631BWD/


title: DNase-seq from anterior cingulate cortex (ENCLB798EAY)

description:
https://www.encodeproject.org/experiments/ENCSR968GKJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR968GKJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB798EAY

value: anterior cingulate cortex

value: tissue

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS533HXC at ENCODE; https://www.encodeproject.org/ENCBS533HXC/


title: snRNA-seq from heart (ENCLB002OSB)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 5
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB002OSB

value: female

value: 8 month

value: nucleus

value: The Jackson Laboratory


title: snRNA-seq from heart (ENCLB625JQR)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB625JQR

value: heart

value: B6/Cast F1 heart P8mo female 1

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from hypothalamus (ENCLB459WPF)

description:
https://www.encodeproject.org/experiments/ENCSR966JUL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR966JUL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB459WPF

value: hypothalamus

value: ENCBS064XPF at ENCODE; https://www.encodeproject.org/ENCBS064XPF/


title: DNase-seq from cerebellum (ENCLB060FHU)

description:
https://www.encodeproject.org/experiments/ENCSR966ZIA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR966ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB060FHU

value: cerebellum

value: adult

value: ENCBS808XWM at ENCODE; https://www.encodeproject.org/ENCBS808XWM/


title: DNase-seq from hypothalamus (ENCLB849HKQ)

description:
https://www.encodeproject.org/experiments/ENCSR966JUL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966JUL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB849HKQ

value: male

value: unknown

value: ENCBS172BCZ at ENCODE; https://www.encodeproject.org/ENCBS172BCZ/


title: snRNA-seq from heart (ENCLB443IOO)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 4
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB443IOO

value: tissue

value: B6/Cast F1 heart P8mo female 2

value: Ali Mortazavi, UCI

value: ENCBS858VQI at ENCODE; https://www.encodeproject.org/ENCBS858VQI/


title: DNase-seq from anterior cingulate cortex (ENCLB356FZX)

description:
https://www.encodeproject.org/experiments/ENCSR972QAI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR972QAI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB356FZX

value: anterior cingulate cortex

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS162BDO at ENCODE; https://www.encodeproject.org/ENCBS162BDO/


title: snRNA-seq from heart (ENCLB557VYM)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 4
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB557VYM

source_name: Mus musculus strain 5xFAD/CAST female adult (8 months) heart tissue nuclear fraction

value: heart

value: 5xFAD/Cast F1 heart P8mo female 2

value: female

value: 8 month

value: nucleus

value: The Jackson Laboratory

value: ENCBS607HRU at ENCODE; https://www.encodeproject.org/ENCBS607HRU/

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: DNase-seq from caudate nucleus (ENCLB514IAQ)

description:
https://www.encodeproject.org/experiments/ENCSR966BPO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR966BPO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB514IAQ

source_name: Homo sapiens male adult caudate nucleus tissue

value: caudate nucleus

value: male

value: adult

value: unknown

value: ENCBS485JMN at ENCODE; https://www.encodeproject.org/ENCBS485JMN/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB436DIE)

description:
https://www.encodeproject.org/experiments/ENCSR964HOO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR964HOO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB436DIE

value: dorsolateral prefrontal cortex

value: tissue

value: ENCBS205XUO at ENCODE; https://www.encodeproject.org/ENCBS205XUO/


title: snRNA-seq from heart (ENCLB851FSS)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB851FSS

value: 5xFAD/Cast F1 heart P8mo female 1

value: Ali Mortazavi, UCI

value: ENCBS859MFY at ENCODE; https://www.encodeproject.org/ENCBS859MFY/


title: snRNA-seq from heart (ENCLB186JIB)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB186JIB

value: heart

value: 5xFAD/Cast F1 heart P8mo female 2

value: female


title: snRNA-seq from heart (ENCLB776LBL)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB776LBL

value: 8 month

value: nucleus

value: The Jackson Laboratory


title: DNase-seq from caudate nucleus (ENCLB115XCK)

description:
https://www.encodeproject.org/experiments/ENCSR965IUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR965IUZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB115XCK

value: caudate nucleus

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS591AFF at ENCODE; https://www.encodeproject.org/ENCBS591AFF/


title: snRNA-seq from heart (ENCLB169SPB)

description:
https://www.encodeproject.org/experiments/ENCSR145HUM/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR145HUM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB169SPB

value: B6/Cast F1 heart P8mo female 2

value: adult

value: ENCBS858VQI at ENCODE; https://www.encodeproject.org/ENCBS858VQI/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: DNase-seq from hypothalamus (ENCLB452KBK)

description:
https://www.encodeproject.org/experiments/ENCSR955JER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR955JER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB452KBK

source_name: Homo sapiens female adult hypothalamus tissue

value: hypothalamus

value: tissue

value: unknown

value: ENCBS550WDX at ENCODE; https://www.encodeproject.org/ENCBS550WDX/


title: DNase-seq from nucleus accumbens (ENCLB856JPP)

description:
https://www.encodeproject.org/experiments/ENCSR951HRO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR951HRO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB856JPP

source_name: Homo sapiens male adult nucleus accumbens tissue

value: nucleus accumbens

value: male

value: ENCBS973DKD at ENCODE; https://www.encodeproject.org/ENCBS973DKD/


title: snRNA-seq from heart (ENCLB962AKH)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 3
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB962AKH

value: heart

value: 5xFAD/Cast F1 heart P8mo female 2

value: female

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus

value: ENCBS607HRU at ENCODE; https://www.encodeproject.org/ENCBS607HRU/

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: snRNA-seq from heart (ENCLB020GII)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB020GII

value: 5xFAD/Cast F1 heart P8mo female 1

value: adult

value: The Jackson Laboratory

value: ENCBS859MFY at ENCODE; https://www.encodeproject.org/ENCBS859MFY/


title: DNase-seq from hypothalamus (ENCLB125WSR)

description:
https://www.encodeproject.org/experiments/ENCSR955JER/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR955JER
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB125WSR

value: hypothalamus

value: tissue

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS306YUR at ENCODE; https://www.encodeproject.org/ENCBS306YUR/


title: snRNA-seq from heart (ENCLB878SAL)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 5
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB878SAL

value: heart

value: 5xFAD/Cast F1 heart P8mo female 2


title: DNase-seq from anterior cingulate cortex (ENCLB564XGG)

description:
https://www.encodeproject.org/experiments/ENCSR951HGM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR951HGM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB564XGG

value: anterior cingulate cortex

value: female

value: ENCBS581OML at ENCODE; https://www.encodeproject.org/ENCBS581OML/


title: snRNA-seq from heart (ENCLB219YAZ)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB219YAZ

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus


title: snRNA-seq from heart (ENCLB783WOJ)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 5
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB783WOJ

value: 5xFAD/Cast F1 heart P8mo female 1

value: adult

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: DNase-seq from hypothalamus (ENCLB674DVE)

description:
https://www.encodeproject.org/experiments/ENCSR949TRE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR949TRE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB674DVE

value: hypothalamus

value: male

value: ENCBS104CXT at ENCODE; https://www.encodeproject.org/ENCBS104CXT/


title: DNase-seq from nucleus accumbens (ENCLB627NLJ)

description:
https://www.encodeproject.org/experiments/ENCSR951HRO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR951HRO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB627NLJ

value: nucleus accumbens

value: tissue

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS965CAZ at ENCODE; https://www.encodeproject.org/ENCBS965CAZ/


title: snRNA-seq from gastrocnemius (ENCLB479CCX)

description:
https://www.encodeproject.org/experiments/ENCSR138QIF/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 2k
experiment encode accession: ENCSR138QIF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB479CCX
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (10 days) gastrocnemius tissue nuclear fraction

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P10 female 2

value: postnatal

value: 10 day

value: The Jackson Laboratory

value: ENCBS933EVB at ENCODE; https://www.encodeproject.org/ENCBS933EVB/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from gastrocnemius (ENCLB253FUL)

description:
https://www.encodeproject.org/experiments/ENCSR137UJM/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 15k
experiment encode accession: ENCSR137UJM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB253FUL

source_name: Mus musculus strain B6CASTF1/J female adult (2 months) gastrocnemius tissue nuclear fraction

value: B6/Cast F1 gastrocnemius P2mo female 1

value: female

value: adult

value: 2 month

value: Ali Mortazavi, UCI

value: nucleus

value: ENCBS880FWQ at ENCODE; https://www.encodeproject.org/ENCBS880FWQ/


title: DNase-seq from hypothalamus (ENCLB101GKE)

description:
https://www.encodeproject.org/experiments/ENCSR939WEH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR939WEH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB101GKE

value: hypothalamus

value: tissue

value: male

value: unknown

value: Kristin Ardlie

value: ENCBS869ZEA at ENCODE; https://www.encodeproject.org/ENCBS869ZEA/


title: snRNA-seq from heart (ENCLB777BAA)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 1
technical replicate number: 6
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB777BAA

value: heart

value: 5xFAD/Cast F1 heart P8mo female 1

value: 8 month

value: ENCBS859MFY at ENCODE; https://www.encodeproject.org/ENCBS859MFY/

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: DNase-seq from caudate nucleus (ENCLB593RXQ)

description:
https://www.encodeproject.org/experiments/ENCSR935RGG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR935RGG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB593RXQ

value: caudate nucleus

value: John Stamatoyannopoulos, UW

value: ENCBS616NNZ at ENCODE; https://www.encodeproject.org/ENCBS616NNZ/


title: snRNA-seq from heart (ENCLB428DMX)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 6
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB428DMX

value: 5xFAD/Cast F1 heart P8mo female 2

value: female

value: adult

value: Ali Mortazavi, UCI

value: The Jackson Laboratory

value: ENCBS607HRU at ENCODE; https://www.encodeproject.org/ENCBS607HRU/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB867MDB)

description:
https://www.encodeproject.org/experiments/ENCSR936FGZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR936FGZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867MDB

value: dorsolateral prefrontal cortex

value: tissue

value: male

value: unknown

value: ENCBS232ZCL at ENCODE; https://www.encodeproject.org/ENCBS232ZCL/


title: snRNA-seq from heart (ENCLB516AIW)

description:
https://www.encodeproject.org/experiments/ENCSR141EJG/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read 5xFAD/Cast F1 heart P8mo female 8mo 12k
experiment encode accession: ENCSR141EJG
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB516AIW

value: heart

value: 8 month

value: nucleus


title: DNase-seq from Ammon's horn (ENCLB251JYD)

description:
https://www.encodeproject.org/experiments/ENCSR955BCT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR955BCT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB251JYD

source_name: Homo sapiens male adult Ammon's horn tissue

value: Ammon's horn

value: Kristin Ardlie

value: ENCBS986UXZ at ENCODE; https://www.encodeproject.org/ENCBS986UXZ/


title: DNase-seq from caudate nucleus (ENCLB315KJZ)

description:
https://www.encodeproject.org/experiments/ENCSR935RGG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR935RGG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB315KJZ

value: caudate nucleus

value: John Stamatoyannopoulos, UW

value: ENCBS741THO at ENCODE; https://www.encodeproject.org/ENCBS741THO/


title: snRNA-seq from gastrocnemius (ENCLB630YPY)

description:
https://www.encodeproject.org/experiments/ENCSR137UJM/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 15k
experiment encode accession: ENCSR137UJM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB630YPY

value: gastrocnemius

value: B6/Cast F1 gastrocnemius P2mo female 2

value: female

value: adult

value: 2 month

value: Ali Mortazavi, UCI

value: ENCBS837MZQ at ENCODE; https://www.encodeproject.org/ENCBS837MZQ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from gastrocnemius (ENCLB718QRU)

description:
https://www.encodeproject.org/experiments/ENCSR137UJM/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 15k
experiment encode accession: ENCSR137UJM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB718QRU

value: tissue

value: The Jackson Laboratory


title: snRNA-seq from gastrocnemius (ENCLB639CLJ)

description:
https://www.encodeproject.org/experiments/ENCSR138QIF/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P10 female normal 2k
experiment encode accession: ENCSR138QIF
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB639CLJ
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: B6/Cast F1 gastrocnemius P10 female 1

value: postnatal

value: 10 day

value: nucleus

value: ENCBS180IZM at ENCODE; https://www.encodeproject.org/ENCBS180IZM/


title: DNase-seq from caudate nucleus (ENCLB763QME)

description:
https://www.encodeproject.org/experiments/ENCSR946ORZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR946ORZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB763QME

value: caudate nucleus

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS075PSG at ENCODE; https://www.encodeproject.org/ENCBS075PSG/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB003FHE)

description:
https://www.encodeproject.org/experiments/ENCSR935QVH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR935QVH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB003FHE

value: dorsolateral prefrontal cortex

value: female

value: adult

value: ENCBS125VIC at ENCODE; https://www.encodeproject.org/ENCBS125VIC/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB107KGA)

description:
https://www.encodeproject.org/experiments/ENCSR935QVH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR935QVH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB107KGA

value: tissue

value: ENCBS250DNT at ENCODE; https://www.encodeproject.org/ENCBS250DNT/


title: DNase-seq from hypothalamus (ENCLB418CVX)

description:
https://www.encodeproject.org/experiments/ENCSR927TTG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR927TTG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB418CVX

value: hypothalamus

value: ENCBS751LLJ at ENCODE; https://www.encodeproject.org/ENCBS751LLJ/


title: DNase-seq from dorsolateral prefrontal cortex (ENCLB076VUQ)

description:
https://www.encodeproject.org/experiments/ENCSR929ESM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR929ESM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB076VUQ

value: ENCBS317HSL at ENCODE; https://www.encodeproject.org/ENCBS317HSL/


title: DNase-seq from caudate nucleus (ENCLB439NRD)

description:
https://www.encodeproject.org/experiments/ENCSR947VPM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR947VPM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB439NRD

value: ENCBS288CZT at ENCODE; https://www.encodeproject.org/ENCBS288CZT/


title: snRNA-seq from gastrocnemius (ENCLB030BZP)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB030BZP

source_name: Mus musculus strain 5xFAD/CAST female adult (8 months) gastrocnemius tissue nuclear fraction

value: gastrocnemius

value: 5xFAD/Cast F1 gastrocnemius P8mo female 2

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS097XFY at ENCODE; https://www.encodeproject.org/ENCBS097XFY/

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: snRNA-seq from gastrocnemius (ENCLB540WYG)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB540WYG

value: 5xFAD/Cast F1 gastrocnemius P8mo female 1

value: female

value: ENCBS915VYE at ENCODE; https://www.encodeproject.org/ENCBS915VYE/


title: DNase-seq from amygdala (ENCLB254IPG)

description:
https://www.encodeproject.org/experiments/ENCSR927NAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR927NAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB254IPG

source_name: Homo sapiens female adult amygdala tissue

value: amygdala

value: tissue

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS828PIL at ENCODE; https://www.encodeproject.org/ENCBS828PIL/


title: DNase-seq from putamen (ENCLB631TQU)

description:
https://www.encodeproject.org/experiments/ENCSR933MOK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR933MOK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB631TQU

value: putamen

value: male

value: ENCBS733FXP at ENCODE; https://www.encodeproject.org/ENCBS733FXP/


title: snRNA-seq from gastrocnemius (ENCLB752DCP)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 2
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB752DCP

value: gastrocnemius

value: 5xFAD/Cast F1 gastrocnemius P8mo female 2

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus


title: snRNA-seq from gastrocnemius (ENCLB376VCF)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 2
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB376VCF

value: 5xFAD/Cast F1 gastrocnemius P8mo female 1

value: female

value: The Jackson Laboratory

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: DNase-seq from Ammon's horn (ENCLB911BAK)

description:
https://www.encodeproject.org/experiments/ENCSR932MFK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR932MFK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB911BAK

value: Ammon's horn

value: tissue

value: adult

value: ENCBS613QIX at ENCODE; https://www.encodeproject.org/ENCBS613QIX/


title: snRNA-seq from gastrocnemius (ENCLB708BOW)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 5
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB708BOW

value: ENCBS915VYE at ENCODE; https://www.encodeproject.org/ENCBS915VYE/


title: snRNA-seq from gastrocnemius (ENCLB413VCH)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 4
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB413VCH


title: snRNA-seq from gastrocnemius (ENCLB735YEZ)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 4
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB735YEZ

value: ENCBS097XFY at ENCODE; https://www.encodeproject.org/ENCBS097XFY/


title: snRNA-seq from gastrocnemius (ENCLB849DJX)

description:
https://www.encodeproject.org/experiments/ENCSR137UJM/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 gastrocnemius P2mo female normal 15k
experiment encode accession: ENCSR137UJM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB849DJX

value: B6/Cast F1 gastrocnemius P2mo female 1

value: 2 month

value: ENCBS880FWQ at ENCODE; https://www.encodeproject.org/ENCBS880FWQ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from gastrocnemius (ENCLB201OBJ)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 3
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB201OBJ

value: gastrocnemius

value: 5xFAD/Cast F1 gastrocnemius P8mo female 2

value: 8 month


title: DNase-seq from Ammon's horn (ENCLB802KBA)

description:
https://www.encodeproject.org/experiments/ENCSR921HYQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR921HYQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB802KBA

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS307MPW at ENCODE; https://www.encodeproject.org/ENCBS307MPW/


title: snRNA-seq from gastrocnemius (ENCLB788CQU)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 6
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB788CQU

value: tissue

value: female

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: snRNA-seq from gastrocnemius (ENCLB958WSA)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 6
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB958WSA

value: 5xFAD/Cast F1 gastrocnemius P8mo female 1

value: adult

value: ENCBS915VYE at ENCODE; https://www.encodeproject.org/ENCBS915VYE/


title: DNase-seq from putamen (ENCLB047QKB)

description:
https://www.encodeproject.org/experiments/ENCSR922FCQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922FCQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB047QKB

value: putamen

value: ENCBS242GSB at ENCODE; https://www.encodeproject.org/ENCBS242GSB/


title: DNase-seq from amygdala (ENCLB424RPR)

description:
https://www.encodeproject.org/experiments/ENCSR922NIB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922NIB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB424RPR

value: amygdala

value: ENCBS876GHA at ENCODE; https://www.encodeproject.org/ENCBS876GHA/


title: snRNA-seq from gastrocnemius (ENCLB470YDO)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 2
technical replicate number: 5
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB470YDO

value: gastrocnemius

value: 5xFAD/Cast F1 gastrocnemius P8mo female 2

value: 8 month

value: ENCBS097XFY at ENCODE; https://www.encodeproject.org/ENCBS097XFY/


title: DNase-seq from substantia nigra (ENCLB578JWB)

description:
https://www.encodeproject.org/experiments/ENCSR913YDD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR913YDD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB578JWB

value: substantia nigra

value: tissue

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS919EMX at ENCODE; https://www.encodeproject.org/ENCBS919EMX/


title: DNase-seq from cerebellum (ENCLB406RJR)

description:
https://www.encodeproject.org/experiments/ENCSR918UPX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR918UPX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB406RJR

source_name: Homo sapiens male adult cerebellum tissue

value: cerebellum

value: adult

value: ENCBS690AOQ at ENCODE; https://www.encodeproject.org/ENCBS690AOQ/


title: DNase-seq from amygdala (ENCLB941SKF)

description:
https://www.encodeproject.org/experiments/ENCSR918QYG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR918QYG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB941SKF

source_name: Homo sapiens male adult amygdala tissue

value: ENCBS470SLQ at ENCODE; https://www.encodeproject.org/ENCBS470SLQ/


title: DNase-seq from putamen (ENCLB547NWW)

description:
https://www.encodeproject.org/experiments/ENCSR922FCQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR922FCQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB547NWW

value: putamen

value: ENCBS497CYU at ENCODE; https://www.encodeproject.org/ENCBS497CYU/


title: snRNA-seq from left cerebral cortex (ENCLB956ELF)

description:
https://www.encodeproject.org/experiments/ENCSR134FSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P18-20mo male normal 2k
experiment encode accession: ENCSR134FSZ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB956ELF
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male adult (18-20 months) left cerebral cortex tissue nuclear fraction

value: left cerebral cortex

value: B6/Cast F1 cortex P18-20mo male 1

value: 18-20 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS983SKY at ENCODE; https://www.encodeproject.org/ENCBS983SKY/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from left cerebral cortex (ENCLB242KYL)

description:
https://www.encodeproject.org/experiments/ENCSR132KMR/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P36 male normal 2k
experiment encode accession: ENCSR132KMR
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB242KYL
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J male postnatal (36 days) left cerebral cortex tissue nuclear fraction

value: tissue

value: B6/Cast F1 cortex P36 male 2

value: male

value: postnatal

value: 36 day

value: ENCBS784PKN at ENCODE; https://www.encodeproject.org/ENCBS784PKN/


title: DNase-seq from hypothalamus (ENCLB133GNY)

description:
https://www.encodeproject.org/experiments/ENCSR910TVN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR910TVN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB133GNY

source_name: Homo sapiens male adult hypothalamus tissue

value: hypothalamus

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Kristin Ardlie

value: ENCBS171YBO at ENCODE; https://www.encodeproject.org/ENCBS171YBO/


title: DNase-seq from cerebellum (ENCLB861ZAV)

description:
https://www.encodeproject.org/experiments/ENCSR925FLT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR925FLT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB861ZAV

source_name: Homo sapiens female adult cerebellum tissue

value: cerebellum

value: female

value: ENCBS338YIW at ENCODE; https://www.encodeproject.org/ENCBS338YIW/


title: snRNA-seq from gastrocnemius (ENCLB221EQJ)

description:
https://www.encodeproject.org/experiments/ENCSR136FOI/
***************
biological replicate number: 1
technical replicate number: 3
description: Illumina short-read 5xFAD/Cast F1 gastrocnemius P8mo female 8mo 12k
experiment encode accession: ENCSR136FOI
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB221EQJ

value: gastrocnemius

value: 5xFAD/Cast F1 gastrocnemius P8mo female 1

value: 8 month

value: Ali Mortazavi, UCI

value: nucleus

value: The Jackson Laboratory

value: ENCBS915VYE at ENCODE; https://www.encodeproject.org/ENCBS915VYE/

value: Derived from ENCODE donor ENCDO996MUL; https://www.encodeproject.org/ENCDO996MUL/


title: snRNA-seq from left cerebral cortex (ENCLB039CRC)

description:
https://www.encodeproject.org/experiments/ENCSR134FSZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 cortex P18-20mo male normal 2k
experiment encode accession: ENCSR134FSZ
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB039CRC
nucleic acid starting quantity: 42
nucleic acid starting quantity units: cells

value: left cerebral cortex

value: tissue

value: B6/Cast F1 cortex P18-20mo male 2

value: male

value: 18-20 month

value: ENCBS873TSZ at ENCODE; https://www.encodeproject.org/ENCBS873TSZ/

value: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/


title: snRNA-seq from heart (ENCLB230PXB)

description:
https://www.encodeproject.org/experiments/ENCSR125HRM/
***************
biological replicate number: 2
technical replicate number: 1
description: Illumina short-read B6/Cast F1 heart P14 female normal 2k
experiment encode accession: ENCSR125HRM
assay title: snRNA-seq
assembly: mm10
encode release date: 2022-03-25
lab: Ali Mortazavi, UCI
library encode accession: ENCLB230PXB
nucleic acid starting quantity: 83
nucleic acid starting quantity units: cells

source_name: Mus musculus strain B6CASTF1/J female postnatal (14 days) heart tissue nuclear fraction

value: heart

value: B6/Cast F1 heart P14 female 2

value: female

value: postnatal

value: 14 day

value: ENCBS099STV at ENCODE; https://www.encodeproject.org/ENCBS099STV/