title: DNase-seq from NCI-H510A (ENCLB503ULI)

description:
https://www.encodeproject.org/experiments/ENCSR573PUI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573PUI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB503ULI
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens NCI-H510A cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: male

value: 56 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS759RJD at ENCODE; https://www.encodeproject.org/ENCBS759RJD/


title: Flow-FISH CRISPR screen from K562 (ENCLB616AEI)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB616AEI
size range: 200-210

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

tag: line

tag: biosample encode accession

tag: encode accession

tag: Sex

value: female

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

value: 53 year

tag: lab

value: Jesse Engreitz, Stanford

tag: source

value: ATCC

tag: link

value: ENCBS249MMJ at ENCODE; https://www.encodeproject.org/ENCBS249MMJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB192QGT)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB192QGT
size range: 200-210


title: DNase-seq from activated T-cell (ENCLB573ACP)

description:
https://www.encodeproject.org/experiments/ENCSR776JYF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR776JYF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB573ACP

source_name: Homo sapiens male adult (32 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: primary cell

value: 32 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

tag: treatments

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS186RND at ENCODE; https://www.encodeproject.org/ENCBS186RND/


title: DNase-seq from activated T-cell (ENCLB483LKL)

description:
https://www.encodeproject.org/experiments/ENCSR768BZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR768BZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB483LKL

source_name: Homo sapiens female adult (40 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: 40 year

value: ENCBS985DNF at ENCODE; https://www.encodeproject.org/ENCBS985DNF/


title: Flow-FISH CRISPR screen from K562 (ENCLB080QPN)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB080QPN
size range: 200-210

value: cell line

value: ENCBS321XPS at ENCODE; https://www.encodeproject.org/ENCBS321XPS/


title: PRO-cap from ovary (ENCLB992MGO)

description:
https://www.encodeproject.org/experiments/ENCSR766KPR/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR766KPR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB992MGO

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens female adult (61 years) ovary tissue

value: ovary

value: tissue

value: female

value: DM:no; HTN:no; CAD:no; lungs with moderate emphysema

value: 61 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS543NXM at ENCODE; https://www.encodeproject.org/ENCBS543NXM/


title: Flow-FISH CRISPR screen from K562 (ENCLB260MUF)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB260MUF
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS249MMJ at ENCODE; https://www.encodeproject.org/ENCBS249MMJ/


title: PRO-cap from Peyer's patch (ENCLB035RWD)

description:
https://www.encodeproject.org/experiments/ENCSR757HMG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peyer's patch.
experiment encode accession: ENCSR757HMG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB035RWD

source_name: Homo sapiens female adult (53 years) Peyer's patch tissue

value: Peyer's patch

value: GTEx

value: ENCBS330CLA at ENCODE; https://www.encodeproject.org/ENCBS330CLA/


title: Flow-FISH CRISPR screen from K562 (ENCLB321LEE)

description:
https://www.encodeproject.org/experiments/ENCSR097HQT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR097HQT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB321LEE
size range: 200-210

value: cell line

value: ENCBS321XPS at ENCODE; https://www.encodeproject.org/ENCBS321XPS/


title: PRO-cap from ovary (ENCLB836IHT)

description:
https://www.encodeproject.org/experiments/ENCSR766KPR/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Ovary.
experiment encode accession: ENCSR766KPR
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB836IHT

value: ovary

value: tissue

value: female


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB840VSZ)

description:
https://www.encodeproject.org/experiments/ENCSR756RES/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR756RES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB840VSZ

source_name: Homo sapiens CD4-positive, alpha-beta memory T primary cell, preserved by cryopreservation

value: CD4-positive, alpha-beta memory T cell

value: primary cell

tag: note

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: healthy

value: unknown

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS902WKO at ENCODE; https://www.encodeproject.org/ENCBS902WKO/


title: DNase-seq from activated T-cell (ENCLB666TZJ)

description:
https://www.encodeproject.org/experiments/ENCSR765HIX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR765HIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB666TZJ

source_name: Homo sapiens female adult (22 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: activated T-cell

value: adult

value: 22 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS281YHW at ENCODE; https://www.encodeproject.org/ENCBS281YHW/


title: DNase-seq from K562 (ENCLB542FCW)

description:
https://www.encodeproject.org/experiments/ENCSR558GSX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR558GSX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB542FCW

source_name: Homo sapiens K562 cell line

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS216OGT at ENCODE; https://www.encodeproject.org/ENCBS216OGT/


title: DNase-seq from activated T-cell (ENCLB137BAC)

description:
https://www.encodeproject.org/experiments/ENCSR765HIX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR765HIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB137BAC

value: primary cell

value: ENCBS526VIO at ENCODE; https://www.encodeproject.org/ENCBS526VIO/


title: PRO-cap from Peyer's patch (ENCLB170QTZ)

description:
https://www.encodeproject.org/experiments/ENCSR757HMG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Peyer's patch.
experiment encode accession: ENCSR757HMG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB170QTZ

value: Peyer's patch

value: tissue

value: Haiyuan Yu, Cornell

value: GTEx

value: ENCBS330CLA at ENCODE; https://www.encodeproject.org/ENCBS330CLA/


title: DNase-seq from HUDEP-2 (ENCLB748NVC)

description:
https://www.encodeproject.org/experiments/ENCSR563VJZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR563VJZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB748NVC

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: adult

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS106KXH at ENCODE; https://www.encodeproject.org/ENCBS106KXH/


title: DNase-seq from CD4-positive, alpha-beta memory T cell (ENCLB764JYD)

description:
https://www.encodeproject.org/experiments/ENCSR756RES/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR756RES
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB764JYD

value: CD4-positive, alpha-beta memory T cell

value: CD4+ memory CD3+ CD4+ CD8- CD45RA- CD45RO+ nonTreg

value: not collected

value: healthy

value: Bradley Bernstein, Broad

value: David Hafler

value: ENCBS902WKO at ENCODE; https://www.encodeproject.org/ENCBS902WKO/


title: DNase-seq from activated B cell (ENCLB161GVO)

description:
https://www.encodeproject.org/experiments/ENCSR266PJC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR266PJC
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161GVO

source_name: Homo sapiens female adult (40 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: female

value: 40 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS380PTT at ENCODE; https://www.encodeproject.org/ENCBS380PTT/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB441IMF)

description:
https://www.encodeproject.org/experiments/ENCSR095GDO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR095GDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB441IMF

source_name: Homo sapiens male adult (38 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: male

value: adult

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS366MIZ at ENCODE; https://www.encodeproject.org/ENCBS366MIZ/


title: PRO-cap from duodenum (ENCLB873ZIB)

description:
https://www.encodeproject.org/experiments/ENCSR754LBG/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Duodenum.
experiment encode accession: ENCSR754LBG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB873ZIB

source_name: Homo sapiens female adult (70 years) duodenum tissue

value: duodenum

value: tissue

value: 70 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS407HQL at ENCODE; https://www.encodeproject.org/ENCBS407HQL/


title: DNase-seq from K562 (ENCLB615KLI)

description:
https://www.encodeproject.org/experiments/ENCSR558GSX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR558GSX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB615KLI

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS793PTK at ENCODE; https://www.encodeproject.org/ENCBS793PTK/


title: PRO-cap from thyroid gland (ENCLB736HSI)

description:
https://www.encodeproject.org/experiments/ENCSR756CCD/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Thyroid gland.
experiment encode accession: ENCSR756CCD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB736HSI

source_name: Homo sapiens male adult (49 years) thyroid gland tissue

value: thyroid gland

value: male

value: adult

value: 49 year

value: ENCBS659TXJ at ENCODE; https://www.encodeproject.org/ENCBS659TXJ/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB885GEL)

description:
https://www.encodeproject.org/experiments/ENCSR750UIY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR750UIY
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR284PQK
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB885GEL

source_name: Homo sapiens male adult (30 years) glutamatergic neuron in vitro differentiated cells genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens SIN3A, genetically modified (insertion) using transduction, genetically modified using...

value: glutamatergic neuron

value: in vitro differentiated cells

value: 30 year

tag: passage number

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS601FTA at ENCODE; https://www.encodeproject.org/ENCBS601FTA/


title: PRO-cap from liver (ENCLB528FVX)

description:
https://www.encodeproject.org/experiments/ENCSR753TEA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Liver.
experiment encode accession: ENCSR753TEA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB528FVX

source_name: Homo sapiens liver tissue

value: liver

value: tissue

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS140ZZJ at ENCODE; https://www.encodeproject.org/ENCBS140ZZJ/


title: PRO-cap from duodenum (ENCLB955MQQ)

description:
https://www.encodeproject.org/experiments/ENCSR754LBG/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Duodenum.
experiment encode accession: ENCSR754LBG
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB955MQQ

value: duodenum

value: female

value: 70 year

value: CHTN

value: ENCBS407HQL at ENCODE; https://www.encodeproject.org/ENCBS407HQL/


title: DNase-seq from HepG2 (ENCLB387TWN)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB387TWN

source_name: Homo sapiens HepG2 cell line

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS391XJO at ENCODE; https://www.encodeproject.org/ENCBS391XJO/


title: DNase-seq from SHP77 (ENCLB600VBO)

description:
https://www.encodeproject.org/experiments/ENCSR563NIX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR563NIX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB600VBO

source_name: Homo sapiens SHP77 cell line treated with 0.1% DMSO for 48 hours

value: adult

value: 54 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS745AQS at ENCODE; https://www.encodeproject.org/ENCBS745AQS/


title: Control CRISPR screen from K562 (ENCLB921LLI)

description:
https://www.encodeproject.org/experiments/ENCSR327XSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR327XSO
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB921LLI

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ENCBS603UJL at ENCODE; https://www.encodeproject.org/ENCBS603UJL/


title: PRO-cap from thyroid gland (ENCLB742SCC)

description:
https://www.encodeproject.org/experiments/ENCSR756CCD/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Thyroid gland.
experiment encode accession: ENCSR756CCD
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB742SCC

value: thyroid gland

value: tissue

value: 49 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS659TXJ at ENCODE; https://www.encodeproject.org/ENCBS659TXJ/


title: DNase-seq from DMS153 (ENCLB358WIS)

description:
https://www.encodeproject.org/experiments/ENCSR557WQO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR557WQO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB358WIS
instrument models: Illumina NextSeq 500,Illumina HiSeq 4000

source_name: Homo sapiens DMS153 cell line treated with 0.1% DMSO for 48 hours

value: cell line

value: male

value: 44 year

value: John Stamatoyannopoulos, UW

value: ENCBS251EGB at ENCODE; https://www.encodeproject.org/ENCBS251EGB/


title: DNase-seq from HepG2 (ENCLB506JGO)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 7
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB506JGO

value: hepatocellular carcinoma

value: child

value: 15 year

value: ATCC

value: ENCBS719QIW at ENCODE; https://www.encodeproject.org/ENCBS719QIW/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB903POG)

description:
https://www.encodeproject.org/experiments/ENCSR747VKR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR747VKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB903POG

source_name: Homo sapiens male adult (32 years) activated CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: adult

value: 32 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS187BCF at ENCODE; https://www.encodeproject.org/ENCBS187BCF/


title: PRO-cap from pancreas (ENCLB003FBW)

description:
https://www.encodeproject.org/experiments/ENCSR744JVA/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR744JVA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB003FBW

source_name: Homo sapiens pancreas organoid

value: pancreas

value: organoid

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS890IND at ENCODE; https://www.encodeproject.org/ENCBS890IND/


title: FACS CRISPR screen from glutamatergic neuron (ENCLB226AXG)

description:
https://www.encodeproject.org/experiments/ENCSR750UIY/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR750UIY
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR284PQK
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB226AXG

value: glutamatergic neuron

value: in vitro differentiated cells

value: male

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS291SWO at ENCODE; https://www.encodeproject.org/ENCBS291SWO/


title: DNase-seq from HepG2 (ENCLB449SNR)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB449SNR

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS661AIO at ENCODE; https://www.encodeproject.org/ENCBS661AIO/


title: DNase-seq from HepG2 (ENCLB240JAY)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB240JAY

value: ENCBS021YMK at ENCODE; https://www.encodeproject.org/ENCBS021YMK/


title: Control CRISPR screen from K562 (ENCLB314DRW)

description:
https://www.encodeproject.org/experiments/ENCSR327XSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR327XSO
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB314DRW

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: ENCBS872NIE at ENCODE; https://www.encodeproject.org/ENCBS872NIE/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB157CWU)

description:
https://www.encodeproject.org/experiments/ENCSR095GDO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR095GDO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB157CWU

value: primary cell

value: male

value: 38 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS558AOH at ENCODE; https://www.encodeproject.org/ENCBS558AOH/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB544UIF)

description:
https://www.encodeproject.org/experiments/ENCSR747VKR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR747VKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB544UIF

value: 32 year

value: Stemcell Technologies

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS964EJS at ENCODE; https://www.encodeproject.org/ENCBS964EJS/


title: DNase-seq from HUDEP-2 (ENCLB307NQV)

description:
https://www.encodeproject.org/experiments/ENCSR545JJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR545JJM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB307NQV

value: cell line

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS859RMZ at ENCODE; https://www.encodeproject.org/ENCBS859RMZ/


title: DNase-seq from activated CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB060NIT)

description:
https://www.encodeproject.org/experiments/ENCSR747VKR/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR747VKR
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB060NIT

value: adult

value: ENCBS049ZVQ at ENCODE; https://www.encodeproject.org/ENCBS049ZVQ/


title: PRO-cap from pancreas (ENCLB045GUA)

description:
https://www.encodeproject.org/experiments/ENCSR744JVA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pancreas.
experiment encode accession: ENCSR744JVA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB045GUA

value: pancreas

value: organoid

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS890IND at ENCODE; https://www.encodeproject.org/ENCBS890IND/


title: DNase-seq from MCF-7 (ENCLB520UUX)

description:
https://www.encodeproject.org/experiments/ENCSR545JUV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR545JUV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB520UUX
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

source_name: Homo sapiens MCF-7 cell line treated with 100 nM diethylstilbestrol for 2 hours

value: breast cancer (adenocarcinoma)

value: 69 year

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS595OMT at ENCODE; https://www.encodeproject.org/ENCBS595OMT/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB913CHV)

description:
https://www.encodeproject.org/experiments/ENCSR740DLY/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR740DLY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB913CHV

source_name: Homo sapiens peripheral blood mononuclear primary cell

value: peripheral blood mononuclear cell

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS777XZX at ENCODE; https://www.encodeproject.org/ENCBS777XZX/


title: Flow-FISH CRISPR screen from K562 (ENCLB416DYH)

description:
https://www.encodeproject.org/experiments/ENCSR538TGD/
***************
biological replicate number: 1
technical replicate number: 1
description: ERP29
experiment encode accession: ENCSR538TGD
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR591JER
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB416DYH

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS023PAT at ENCODE; https://www.encodeproject.org/ENCBS023PAT/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB865GWU)

description:
https://www.encodeproject.org/experiments/ENCSR740DLY/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR740DLY
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB865GWU

value: Haiyuan Yu, Cornell


title: DNase-seq from HepG2 (ENCLB517TEZ)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 6
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB517TEZ

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS529VXU at ENCODE; https://www.encodeproject.org/ENCBS529VXU/


title: PRO-cap from body of pancreas (ENCLB059TZA)

description:
https://www.encodeproject.org/experiments/ENCSR739MOQ/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Body of pancreas.
experiment encode accession: ENCSR739MOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB059TZA

source_name: Homo sapiens female adult (53 years) body of pancreas tissue

value: body of pancreas

value: tissue

value: GTEx

value: ENCBS759PYS at ENCODE; https://www.encodeproject.org/ENCBS759PYS/


title: DNase-seq from HepG2 (ENCLB962CIP)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB962CIP

value: cell line

value: ENCBS258EJX at ENCODE; https://www.encodeproject.org/ENCBS258EJX/


title: Flow-FISH CRISPR screen from K562 (ENCLB663VJA)

description:
https://www.encodeproject.org/experiments/ENCSR538TGD/
***************
biological replicate number: 2
technical replicate number: 1
description: ERP29
experiment encode accession: ENCSR538TGD
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR591JER
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB663VJA

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Pardis Sabeti, Broad

value: ENCBS686VUT at ENCODE; https://www.encodeproject.org/ENCBS686VUT/


title: DNase-seq from HepG2 (ENCLB515EHJ)

description:
https://www.encodeproject.org/experiments/ENCSR094FWH/
***************
biological replicate number: 5
technical replicate number: 1
description:
experiment encode accession: ENCSR094FWH
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB515EHJ

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS748AKO at ENCODE; https://www.encodeproject.org/ENCBS748AKO/


title: PRO-cap from body of pancreas (ENCLB073MVV)

description:
https://www.encodeproject.org/experiments/ENCSR739MOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Body of pancreas.
experiment encode accession: ENCSR739MOQ
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB073MVV

value: Haiyuan Yu, Cornell


title: Control CRISPR screen from K562 (ENCLB728EEL)

description:
https://www.encodeproject.org/experiments/ENCSR311XHA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR311XHA
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB728EEL

value: ATCC

value: ENCBS260PZX at ENCODE; https://www.encodeproject.org/ENCBS260PZX/


title: DNase-seq from activated B cell (ENCLB062NHT)

description:
https://www.encodeproject.org/experiments/ENCSR729RAF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR729RAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB062NHT

source_name: Homo sapiens female adult (22 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: primary cell

value: 22 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS809DJK at ENCODE; https://www.encodeproject.org/ENCBS809DJK/


title: DNase-seq from activated B cell (ENCLB696PCO)

description:
https://www.encodeproject.org/experiments/ENCSR729RAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR729RAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB696PCO

value: female

value: adult

value: ENCBS164IUT at ENCODE; https://www.encodeproject.org/ENCBS164IUT/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB173LYQ)

description:
https://www.encodeproject.org/experiments/ENCSR094EAF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR094EAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB173LYQ

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 24 hours

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:24; duration_units:hour;

value: ENCBS416UMH at ENCODE; https://www.encodeproject.org/ENCBS416UMH/


title: DNase-seq from activated B cell (ENCLB980PLH)

description:
https://www.encodeproject.org/experiments/ENCSR729RAF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR729RAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB980PLH

value: ENCBS723JCP at ENCODE; https://www.encodeproject.org/ENCBS723JCP/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB007ALZ)

description:
https://www.encodeproject.org/experiments/ENCSR094EAF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR094EAF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB007ALZ

value: ENCBS271HRL at ENCODE; https://www.encodeproject.org/ENCBS271HRL/


title: DNase-seq from activated B cell (ENCLB887TPL)

description:
https://www.encodeproject.org/experiments/ENCSR719XDW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR719XDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB887TPL

source_name: Homo sapiens female adult (40 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: 40 year

value: ENCBS806IEL at ENCODE; https://www.encodeproject.org/ENCBS806IEL/


title: PRO-cap from T-cell (ENCLB296AEK)

description:
https://www.encodeproject.org/experiments/ENCSR723NVI/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in T cells from T1D donor.
experiment encode accession: ENCSR723NVI
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB296AEK

source_name: Homo sapiens female adult (48 years) with type 1 diabetes mellitus; T-cell primary cell

value: T-cell

value: primary cell

value: 48 year

value: Haiyuan Yu, Cornell

value: Dieter Egli

value: ENCBS332KSI at ENCODE; https://www.encodeproject.org/ENCBS332KSI/


title: DNase-seq from activated T-cell (ENCLB894FSH)

description:
https://www.encodeproject.org/experiments/ENCSR093YYI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR093YYI
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB894FSH

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: activated T-cell

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS141IKI at ENCODE; https://www.encodeproject.org/ENCBS141IKI/


title: DNase-seq from cortex of kidney (ENCLB957DSM)

description:
https://www.encodeproject.org/experiments/ENCSR534XJP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR534XJP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB957DSM

source_name: Homo sapiens male adult (70 years) cortex of kidney tissue

value: cortex of kidney

value: tissue

value: adult

value: 70 year

value: John Stamatoyannopoulos

value: ENCBS889UWQ at ENCODE; https://www.encodeproject.org/ENCBS889UWQ/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB961XQZ)

description:
https://www.encodeproject.org/experiments/ENCSR723JIC/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR723JIC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB961XQZ

value: peripheral blood mononuclear cell

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS460FKT at ENCODE; https://www.encodeproject.org/ENCBS460FKT/


title: PRO-cap from Metastatic Liver Carcinoma in the Lung (ENCLB853LUH)

description:
https://www.encodeproject.org/experiments/ENCSR720EXP/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic liver cancer to lung.
experiment encode accession: ENCSR720EXP
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB853LUH

source_name: Homo sapiens female adult (62 years) Metastatic Liver Carcinoma in the Lung tissue

value: Metastatic Liver Carcinoma in the Lung

value: female

value: 62 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS902GNN at ENCODE; https://www.encodeproject.org/ENCBS902GNN/


title: DNase-seq from K562 (ENCLB581EXQ)

description:
https://www.encodeproject.org/experiments/ENCSR308IDW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR308IDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB581EXQ

source_name: Homo sapiens K562 cell line

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS482GEI at ENCODE; https://www.encodeproject.org/ENCBS482GEI/


title: DNase-seq from activated B cell (ENCLB437LBH)

description:
https://www.encodeproject.org/experiments/ENCSR719XDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719XDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB437LBH

value: activated B cell

value: primary cell

value: adult

value: 40 year

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS207KSR at ENCODE; https://www.encodeproject.org/ENCBS207KSR/


title: DNase-seq from naive B cell (ENCLB889INA)

description:
https://www.encodeproject.org/experiments/ENCSR723JLO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR723JLO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB889INA

source_name: Homo sapiens naive B primary cell

value: naive B cell

value: not collected

value: healthy

value: unknown

value: David Hafler

value: ENCBS025CJY at ENCODE; https://www.encodeproject.org/ENCBS025CJY/


title: DNase-seq from activated B cell (ENCLB590OWK)

description:
https://www.encodeproject.org/experiments/ENCSR719XDW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719XDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB590OWK

value: female

value: ENCBS679RTA at ENCODE; https://www.encodeproject.org/ENCBS679RTA/


title: DNase-seq from K562 (ENCLB048SIT)

description:
https://www.encodeproject.org/experiments/ENCSR308IDW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR308IDW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB048SIT

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: ENCBS944JLB at ENCODE; https://www.encodeproject.org/ENCBS944JLB/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB092KRF)

description:
https://www.encodeproject.org/experiments/ENCSR092JBF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR092JBF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB092KRF

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: primary cell

value: adult

value: 33 year

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS315NPO at ENCODE; https://www.encodeproject.org/ENCBS315NPO/


title: Control STARR-seq from K562 (ENCLB188MQB)

description:
https://www.encodeproject.org/experiments/ENCSR306NNT/
***************
biological replicate number: 3
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR306NNT
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB188MQB
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

value: Haiyuan Yu, Cornell

value: ENCBS661YGR at ENCODE; https://www.encodeproject.org/ENCBS661YGR/


title: PRO-cap from HCT116 (ENCLB894PDM)

description:
https://www.encodeproject.org/experiments/ENCSR718AQM/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in MED14_T.
experiment encode accession: ENCSR718AQM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB894PDM

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 uM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

value: male

value: 48 year

value: Erez Aiden, Baylor

value: Dr. Masato Kanemaki

value: colorectal carcinoma

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS447TCM at ENCODE; https://www.encodeproject.org/ENCBS447TCM/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB734MQO)

description:
https://www.encodeproject.org/experiments/ENCSR092JBF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR092JBF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB734MQO

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS762YID at ENCODE; https://www.encodeproject.org/ENCBS762YID/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB450EXS)

description:
https://www.encodeproject.org/experiments/ENCSR093BGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR093BGQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB450EXS

source_name: Homo sapiens male adult (42 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours

value: primary cell

value: adult

value: 42 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS390MUG at ENCODE; https://www.encodeproject.org/ENCBS390MUG/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB194VNG)

description:
https://www.encodeproject.org/experiments/ENCSR723JIC/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR723JIC
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB194VNG

value: peripheral blood mononuclear cell

value: not collected

value: unknown

value: Haiyuan Yu, Cornell

value: Remi J. Creusot

value: ENCBS460FKT at ENCODE; https://www.encodeproject.org/ENCBS460FKT/


title: Control STARR-seq from K562 (ENCLB653AUJ)

description:
https://www.encodeproject.org/experiments/ENCSR306NNT/
***************
biological replicate number: 1
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR306NNT
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB653AUJ
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS011YRZ at ENCODE; https://www.encodeproject.org/ENCBS011YRZ/


title: Control CRISPR screen from K562 (ENCLB695HIT)

description:
https://www.encodeproject.org/experiments/ENCSR311XHA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR311XHA
assay title: Control CRISPR screen
assembly: GRCh38
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB695HIT

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: female

value: Pardis Sabeti, Broad

value: ENCBS205TWV at ENCODE; https://www.encodeproject.org/ENCBS205TWV/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB958EXL)

description:
https://www.encodeproject.org/experiments/ENCSR712UDA/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR712UDA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB958EXL

source_name: Homo sapiens peripheral blood mononuclear primary cell

value: primary cell

value: ENCBS488GBD at ENCODE; https://www.encodeproject.org/ENCBS488GBD/


title: DNase-seq from activated B cell (ENCLB165OYB)

description:
https://www.encodeproject.org/experiments/ENCSR194PUL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR194PUL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB165OYB

source_name: Homo sapiens female adult (46 years) activated B primary cell treated with 1 ug/mL resiquimod for 48 hours, 10 ng/mL BAFF for 48 hours

value: activated B cell

value: adult

value: 46 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS704BKA at ENCODE; https://www.encodeproject.org/ENCBS704BKA/


title: PRO-cap from HCT116 (ENCLB705YFS)

description:
https://www.encodeproject.org/experiments/ENCSR718AQM/
***************
biological replicate number: 2
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in MED14_T.
experiment encode accession: ENCSR718AQM
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB705YFS

value: cell line

value: male

value: 48 year

value: Erez Aiden, Baylor

value: Dr. Masato Kanemaki

value: colorectal carcinoma

value: treatment_term_name:5-Phenyl-1H-indole-3-acetic acid; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS328JBR at ENCODE; https://www.encodeproject.org/ENCBS328JBR/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: DNase-seq from T-cell (ENCLB697IUQ)

description:
https://www.encodeproject.org/experiments/ENCSR089GLM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR089GLM
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB697IUQ

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: 38 year

value: AllCells

value: ENCBS085GXF at ENCODE; https://www.encodeproject.org/ENCBS085GXF/


title: Control STARR-seq from K562 (ENCLB613JKA)

description:
https://www.encodeproject.org/experiments/ENCSR306NNT/
***************
biological replicate number: 2
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The transfected plasmids (post-transfection DNA sample) were sequenced and reported here.
experiment encode accession: ENCSR306NNT
assay title: Control STARR-seq
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB613JKA
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Haiyuan Yu, Cornell

value: ATCC

value: ENCBS616VDW at ENCODE; https://www.encodeproject.org/ENCBS616VDW/


title: Flow-FISH CRISPR screen from K562 (ENCLB878OWQ)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB878OWQ
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ENCBS765AFD at ENCODE; https://www.encodeproject.org/ENCBS765AFD/


title: DNase-seq from activated B cell (ENCLB507LSK)

description:
https://www.encodeproject.org/experiments/ENCSR194PUL/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR194PUL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB507LSK

value: activated B cell

value: 46 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS504QXG at ENCODE; https://www.encodeproject.org/ENCBS504QXG/


title: PRO-cap from peripheral blood mononuclear cell (ENCLB257KJI)

description:
https://www.encodeproject.org/experiments/ENCSR712UDA/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.
experiment encode accession: ENCSR712UDA
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB257KJI

value: peripheral blood mononuclear cell

value: primary cell

value: not collected

value: unknown

value: Remi J. Creusot

value: ENCBS488GBD at ENCODE; https://www.encodeproject.org/ENCBS488GBD/


title: FACS CRISPR screen from WTC11 (ENCLB445DYN)

description:
https://www.encodeproject.org/experiments/ENCSR191ECR/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR191ECR
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR418JRB
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB445DYN

source_name: Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR (pgRNA) targeting H. sapiens APP, genetically modified (insertion) using transduction, genetically modified using CRISPR cutting (pgRNA)

value: male

value: adult

value: 30 year

value: Yin Shen, UCSF

value: Li Gan

value: ENCBS856YZQ at ENCODE; https://www.encodeproject.org/ENCBS856YZQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB209OHA)

description:
https://www.encodeproject.org/experiments/ENCSR306HNR/
***************
biological replicate number: 1
technical replicate number: 1
description: LMO2
experiment encode accession: ENCSR306HNR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB209OHA

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL doxycycline for 48 hours

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Pardis Sabeti, Broad

value: ATCC

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS196OTP at ENCODE; https://www.encodeproject.org/ENCBS196OTP/


title: PRO-cap from T-cell (ENCLB060ZBH)

description:
https://www.encodeproject.org/experiments/ENCSR701MOE/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in T cells from T1D donor.
experiment encode accession: ENCSR701MOE
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB060ZBH

source_name: Homo sapiens female adult (19 years) with type 1 diabetes mellitus; T-cell primary cell

value: T-cell

value: primary cell

value: 19 year

value: Haiyuan Yu, Cornell

value: Dieter Egli

value: ENCBS283POP at ENCODE; https://www.encodeproject.org/ENCBS283POP/


title: FACS CRISPR screen from WTC11 (ENCLB366AOF)

description:
https://www.encodeproject.org/experiments/ENCSR191ECR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR191ECR
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR418JRB
encode release date: 2022-07-19
lab: Yin Shen, UCSF
library encode accession: ENCLB366AOF

value: male

value: adult

value: 30 year

value: Yin Shen, UCSF

value: ENCBS753HZW at ENCODE; https://www.encodeproject.org/ENCBS753HZW/


title: Flow-FISH CRISPR screen from K562 (ENCLB641LHZ)

description:
https://www.encodeproject.org/experiments/ENCSR298NSD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR298NSD
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB641LHZ

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS554UZW at ENCODE; https://www.encodeproject.org/ENCBS554UZW/


title: DNase-seq from activated B cell (ENCLB414ZEU)

description:
https://www.encodeproject.org/experiments/ENCSR194PUL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR194PUL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB414ZEU

value: activated B cell

value: 46 year

value: John Stamatoyannopoulos, UW

value: Stemcell Technologies

value: treatment_term_id:CHEBI:36706; treatment_term_name:resiquimod; treatment_type:chemical; duration:48; duration_units:hour; treatment_term_id:UniProtKB:Q9Y275; treatment_term_name:BAFF; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS239QWZ at ENCODE; https://www.encodeproject.org/ENCBS239QWZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB504HCW)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB504HCW
size range: 200-210

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS765AFD at ENCODE; https://www.encodeproject.org/ENCBS765AFD/


title: Flow-FISH CRISPR screen from K562 (ENCLB640PVE)

description:
https://www.encodeproject.org/experiments/ENCSR298NSD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR298NSD
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB640PVE

value: adult

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS283LEU at ENCODE; https://www.encodeproject.org/ENCBS283LEU/


title: proliferation CRISPR screen from OCI-AML2 (ENCLB639QZP)

description:
https://www.encodeproject.org/experiments/ENCSR689KVW/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR689KVW
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR770ENU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB639QZP

source_name: Homo sapiens OCI-AML2 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line

value: male

value: acute myeloid leukemia

value: 65 year

value: Tim Reddy, Duke

value: Anthony Letai

value: ENCBS091HPB at ENCODE; https://www.encodeproject.org/ENCBS091HPB/


title: DNase-seq from HCT116 (ENCLB948FBR)

description:
https://www.encodeproject.org/experiments/ENCSR690JTP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR690JTP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB948FBR

source_name: Homo sapiens HCT116 cell line

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS613RWA at ENCODE; https://www.encodeproject.org/ENCBS613RWA/


title: Flow-FISH CRISPR screen from K562 (ENCLB461PTG)

description:
https://www.encodeproject.org/experiments/ENCSR306HNR/
***************
biological replicate number: 2
technical replicate number: 1
description: LMO2
experiment encode accession: ENCSR306HNR
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR327XSO
encode release date: 2021-05-20
lab: Pardis Sabeti, Broad
library encode accession: ENCLB461PTG

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS863ULB at ENCODE; https://www.encodeproject.org/ENCBS863ULB/


title: proliferation CRISPR screen from OCI-AML2 (ENCLB190BOQ)

description:
https://www.encodeproject.org/experiments/ENCSR689KVW/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR689KVW
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR770ENU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB190BOQ

value: cell line

value: adult

value: ENCBS530LLD at ENCODE; https://www.encodeproject.org/ENCBS530LLD/


title: Flow-FISH CRISPR screen from K562 (ENCLB450KXX)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB450KXX
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS454CRK at ENCODE; https://www.encodeproject.org/ENCBS454CRK/


title: Flow-FISH CRISPR screen from K562 (ENCLB996AYI)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB996AYI
size range: 200-210

value: ENCBS765AFD at ENCODE; https://www.encodeproject.org/ENCBS765AFD/


title: DNase-seq from DMS53 (ENCLB747RBQ)

description:
https://www.encodeproject.org/experiments/ENCSR291OJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR291OJV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB747RBQ

source_name: Homo sapiens DMS53 cell line treated with 0.1% DMSO for 48 hours

value: male

value: 54 year

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS407NVV at ENCODE; https://www.encodeproject.org/ENCBS407NVV/


title: proliferation CRISPR screen from OCI-AML2 (ENCLB581WFS)

description:
https://www.encodeproject.org/experiments/ENCSR689KVW/
***************
biological replicate number: 4
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR689KVW
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR770ENU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB581WFS

value: acute myeloid leukemia

value: 65 year

value: Tim Reddy, Duke

value: Anthony Letai

value: ENCBS554DTM at ENCODE; https://www.encodeproject.org/ENCBS554DTM/


title: DNase-seq from HCT116 (ENCLB600WZH)

description:
https://www.encodeproject.org/experiments/ENCSR690JTP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR690JTP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB600WZH

value: colorectal carcinoma

value: 48 year

value: John Stamatoyannopoulos, UW

value: Erez Aiden

value: ENCBS839CPR at ENCODE; https://www.encodeproject.org/ENCBS839CPR/


title: PRO-cap from right lobe of liver (ENCLB428WOF)

description:
https://www.encodeproject.org/experiments/ENCSR694RPO/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR694RPO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB428WOF

source_name: Homo sapiens female adult (47 years) right lobe of liver tissue

value: right lobe of liver

value: tissue

value: female

value: DM:no; HTN:yes; CAD:no

value: adult

value: 47 year

value: Haiyuan Yu, Cornell

value: Michael Snyder

value: ENCBS501SXL at ENCODE; https://www.encodeproject.org/ENCBS501SXL/


title: Flow-FISH CRISPR screen from K562 (ENCLB286IZI)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB286IZI
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS454CRK at ENCODE; https://www.encodeproject.org/ENCBS454CRK/


title: Flow-FISH CRISPR screen from K562 (ENCLB541DNU)

description:
https://www.encodeproject.org/experiments/ENCSR516MPE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR516MPE
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB541DNU

value: Pardis Sabeti, Broad

value: treatment_term_id:CHEBI:50845; treatment_term_name:doxycycline; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS283LEU at ENCODE; https://www.encodeproject.org/ENCBS283LEU/


title: PRO-cap from right lobe of liver (ENCLB584RWP)

description:
https://www.encodeproject.org/experiments/ENCSR694RPO/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Right lobe of liver.
experiment encode accession: ENCSR694RPO
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB584RWP

value: right lobe of liver

value: tissue


title: Flow-FISH CRISPR screen from K562 (ENCLB774MSJ)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB774MSJ
size range: 200-210

value: female

value: ENCBS765AFD at ENCODE; https://www.encodeproject.org/ENCBS765AFD/


title: Flow-FISH CRISPR screen from K562 (ENCLB768TYB)

description:
https://www.encodeproject.org/experiments/ENCSR516MPE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516MPE
assay title: Flow-FISH CRISPR screen
assembly: GRCh38
possible controls: ENCSR692ZUM
encode release date: 2021-10-18
lab: Pardis Sabeti, Broad
library encode accession: ENCLB768TYB

value: adult

value: ENCBS554UZW at ENCODE; https://www.encodeproject.org/ENCBS554UZW/


title: FACS CRISPR screen from K562 (ENCLB877WPM)

description:
https://www.encodeproject.org/experiments/ENCSR689CKC/
***************
biological replicate number: 2
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following FACS high
experiment encode accession: ENCSR689CKC
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR048GGL
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB877WPM

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction (low MOI), genetically modified using CRISPR cutting (sgRNA) 10 days after the sample was treated with Puromycin

value: Yin Shen, UCSF

value: ENCBS386FXR at ENCODE; https://www.encodeproject.org/ENCBS386FXR/


title: FACS CRISPR screen from K562 (ENCLB647TTO)

description:
https://www.encodeproject.org/experiments/ENCSR689CKC/
***************
biological replicate number: 1
technical replicate number: 1
description: CRISPR screen targeting candidate CREs following FACS high
experiment encode accession: ENCSR689CKC
assay title: FACS CRISPR screen
assembly: GRCh38
possible controls: ENCSR048GGL
encode release date: 2021-08-30
lab: Yin Shen, UCSF
library encode accession: ENCLB647TTO

value: cell line

value: ENCBS682AFK at ENCODE; https://www.encodeproject.org/ENCBS682AFK/


title: Flow-FISH CRISPR screen from K562 (ENCLB807VVQ)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB807VVQ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year


title: Flow-FISH CRISPR screen from K562 (ENCLB839CSE)

description:
https://www.encodeproject.org/experiments/ENCSR088XTH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR088XTH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB839CSE
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB448QBA)

description:
https://www.encodeproject.org/experiments/ENCSR180NBV/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR180NBV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB448QBA

source_name: Homo sapiens female adult (71 years) Metastatic Breast Carcinoma in the Brain tissue

value: 71 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS051FDW at ENCODE; https://www.encodeproject.org/ENCBS051FDW/


title: DNase-seq from HUDEP-2 (ENCLB130RQI)

description:
https://www.encodeproject.org/experiments/ENCSR515BIS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515BIS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB130RQI

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: John Stamatoyannopoulos, UW

value: Riken BioResource Cell Bank

value: ENCBS869SGN at ENCODE; https://www.encodeproject.org/ENCBS869SGN/


title: proliferation CRISPR screen from HCT116 (ENCLB747AAC)

description:
https://www.encodeproject.org/experiments/ENCSR087EPN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR087EPN
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB747AAC
size range: 710-720

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA), 14 days post-nucleic acid delivery time

value: colorectal carcinoma

value: adult

value: 48 year

value: Bing Ren, UCSD

value: ENCBS671PTK at ENCODE; https://www.encodeproject.org/ENCBS671PTK/


title: STARR-seq from A549 (ENCLB526NYB)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB526NYB
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 cell line genetically modified (episome) using transient transfection treated with 1 uM Mapracorat (agonist) for 4 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/c8891369-b036-4be1-b881-76ca3911151e/@@download/attachment/Reddy_Lab_WGSS_ENCODE_protocol.pdf
extraction method: Qiagen RNA extraction

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:Mapracorat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS959CPU at ENCODE; https://www.encodeproject.org/ENCBS959CPU/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB537OQI)

description:
https://www.encodeproject.org/experiments/ENCSR687HZX/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR687HZX
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB537OQI

source_name: Homo sapiens female adult (59 years) Metastatic Breast Carcinoma in the Brain tissue

value: tissue

value: female

value: 59 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS776YIN at ENCODE; https://www.encodeproject.org/ENCBS776YIN/


title: STARR-seq from K562 (ENCLB145ROZ)

description:
https://www.encodeproject.org/experiments/ENCSR514FNW/
***************
biological replicate number: 1
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR514FNW
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR306NNT
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB145ROZ
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

source_name: Homo sapiens K562 cell line genetically modified (episome) using transient transfection

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS011YRZ at ENCODE; https://www.encodeproject.org/ENCBS011YRZ/


title: proliferation CRISPR screen from OCI-AML2 (ENCLB517IHN)

description:
https://www.encodeproject.org/experiments/ENCSR689KVW/
***************
biological replicate number: 3
technical replicate number: 1
description: CRISPR-dCas9-based epigenomic regulatory element screening (CERES) technology to screen a subset of putative non-coding regulatory elements identified in human K562 leukemia cells from whole genome discovery screen (validation). This validation screen was performed in OCI-AML2 acute myeloid leukemia cells
experiment encode accession: ENCSR689KVW
assay title: proliferation CRISPR screen
assembly: GRCh38, hg19
possible controls: ENCSR770ENU
encode release date: 2022-10-20
lab: Tim Reddy, Duke
library encode accession: ENCLB517IHN

value: male

value: acute myeloid leukemia

value: adult

value: 65 year

value: Anthony Letai

value: ENCBS720FRS at ENCODE; https://www.encodeproject.org/ENCBS720FRS/


title: STARR-seq from A549 (ENCLB744CPE)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB744CPE
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_name:Mapracorat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS385DUA at ENCODE; https://www.encodeproject.org/ENCBS385DUA/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB647OAS)

description:
https://www.encodeproject.org/experiments/ENCSR088JFQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR088JFQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB647OAS

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS895HCI at ENCODE; https://www.encodeproject.org/ENCBS895HCI/


title: DNase-seq from cerebellar cortex (ENCLB756QVV)

description:
https://www.encodeproject.org/experiments/ENCSR274RXF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR274RXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB756QVV

source_name: Homo sapiens female adult (87 years) cerebellar cortex tissue

value: cerebellar cortex

value: tissue

value: female

value: 87 year

value: Thomas Montine

value: ENCBS129NMA at ENCODE; https://www.encodeproject.org/ENCBS129NMA/


title: STARR-seq from A549 (ENCLB827DSG)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB827DSG
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: male

value: adult

value: ATCC

value: ENCBS959CPU at ENCODE; https://www.encodeproject.org/ENCBS959CPU/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB309LLS)

description:
https://www.encodeproject.org/experiments/ENCSR687HZX/
***************
biological replicate number: 1
technical replicate number: 1
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR687HZX
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB309LLS

value: 59 year

value: Haiyuan Yu, Cornell

value: CHTN

value: ENCBS776YIN at ENCODE; https://www.encodeproject.org/ENCBS776YIN/


title: PRO-cap from Metastatic Breast Carcinoma in the Brain (ENCLB332ZBY)

description:
https://www.encodeproject.org/experiments/ENCSR180NBV/
***************
biological replicate number: 1
technical replicate number: 2
description: A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Metastatic breast cancer to brain.
experiment encode accession: ENCSR180NBV
assay title: PRO-cap
assembly: GRCh38
encode release date: 2025-12-11
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB332ZBY

value: 71 year

value: ENCBS051FDW at ENCODE; https://www.encodeproject.org/ENCBS051FDW/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB385ASJ)

description:
https://www.encodeproject.org/experiments/ENCSR088JFQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR088JFQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB385ASJ

value: primary cell

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P29459; treatment_term_name:Interleukin-12 subunit alpha; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS596ZIZ at ENCODE; https://www.encodeproject.org/ENCBS596ZIZ/


title: STARR-seq from K562 (ENCLB316STV)

description:
https://www.encodeproject.org/experiments/ENCSR514FNW/
***************
biological replicate number: 3
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR514FNW
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR306NNT
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB316STV
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS661YGR at ENCODE; https://www.encodeproject.org/ENCBS661YGR/


title: STARR-seq from A549 (ENCLB928QLN)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB928QLN
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC

value: treatment_term_name:Mapracorat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS158RJP at ENCODE; https://www.encodeproject.org/ENCBS158RJP/


title: proliferation CRISPR screen from HCT116 (ENCLB273FCO)

description:
https://www.encodeproject.org/experiments/ENCSR087EPN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR087EPN
assay title: proliferation CRISPR screen
possible controls: ENCSR469EDZ
encode release date: 2022-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB273FCO
size range: 710-720

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: ENCBS941WDJ at ENCODE; https://www.encodeproject.org/ENCBS941WDJ/


title: STARR-seq from A549 (ENCLB475KUW)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB475KUW
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ENCBS685FQI at ENCODE; https://www.encodeproject.org/ENCBS685FQI/


title: STARR-seq from A549 (ENCLB082AHF)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB082AHF
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: ENCBS385DUA at ENCODE; https://www.encodeproject.org/ENCBS385DUA/


title: DNase-seq from cerebellar cortex (ENCLB681URS)

description:
https://www.encodeproject.org/experiments/ENCSR274RXF/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR274RXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB681URS

value: cerebellar cortex

value: tissue

value: female

value: 87 year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS335HGJ at ENCODE; https://www.encodeproject.org/ENCBS335HGJ/


title: STARR-seq from A549 (ENCLB980FDV)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB980FDV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ATCC


title: STARR-seq from K562 (ENCLB900EMO)

description:
https://www.encodeproject.org/experiments/ENCSR514FNW/
***************
biological replicate number: 2
technical replicate number: 1
description: Human gDNA fragments were selected based on DHS data, GRO-cap data, and/or histone marks in K562 cells and tested for their enhancer activity with eSTARR-seq. The RNAs derived from the transfected plasmids were sequenced and reported here.
experiment encode accession: ENCSR514FNW
assay title: STARR-seq
assembly: hg19
possible controls: ENCSR306NNT
encode release date: 2020-07-13
lab: Haiyuan Yu, Cornell
library encode accession: ENCLB900EMO
fragmentation methods: chemical (Tn5 transposase)
size range: 150-600

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Haiyuan Yu, Cornell

value: ENCBS616VDW at ENCODE; https://www.encodeproject.org/ENCBS616VDW/


title: DNase-seq from cerebellar cortex (ENCLB355CUQ)

description:
https://www.encodeproject.org/experiments/ENCSR274RXF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR274RXF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB355CUQ

value: ENCBS979VSB at ENCODE; https://www.encodeproject.org/ENCBS979VSB/


title: STARR-seq from A549 (ENCLB582NNL)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB582NNL
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: cell line

value: treatment_term_name:Mapracorat; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS685FQI at ENCODE; https://www.encodeproject.org/ENCBS685FQI/


title: DNase-seq from posterior vena cava (ENCLB604KGL)

description:
https://www.encodeproject.org/experiments/ENCSR082MKK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR082MKK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB604KGL

source_name: Homo sapiens female adult (59 years) posterior vena cava tissue

value: posterior vena cava

value: tissue

value: female

value: DM:yes; HTN:yes; CAD:no

value: 59 year

value: Shin Lin

value: ENCBS195LBA at ENCODE; https://www.encodeproject.org/ENCBS195LBA/


title: STARR-seq from A549 (ENCLB588HBV)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB588HBV
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: male

value: adult

value: 58 year

value: Tim Reddy, Duke

value: ENCBS959CPU at ENCODE; https://www.encodeproject.org/ENCBS959CPU/


title: STARR-seq from A549 (ENCLB162NOA)

description:
https://www.encodeproject.org/experiments/ENCSR687CTB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR687CTB
assay title: STARR-seq
assembly: GRCh38
possible controls: ENCSR861AYG
encode release date: 2021-06-17
lab: Tim Reddy, Duke
library encode accession: ENCLB162NOA
size range: 900-1000
nucleic acid starting quantity: 75
nucleic acid starting quantity units: µg

value: ATCC