title: DNase-seq from T47D (ENCLB717VFT)

description:
https://www.encodeproject.org/experiments/ENCSR054EUF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR054EUF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB717VFT
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 10 nM diethylstilbestrol for 120 hours

value: female

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS296JIX at ENCODE; https://www.encodeproject.org/ENCBS296JIX/


title: DNase-seq from T47D (ENCLB247WXV)

status: Public on Feb 28 2026

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR060UTU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR060UTU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB247WXV

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 120 hours

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: Sex

tag: health state

tag: dev stage

value: adult

tag: age

tag: lab

value: John Stamatoyannopoulos, UW

tag: source

value: ATCC

tag: treatments

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:120; duration_units:hour;

tag: link

value: ENCBS614LRB at ENCODE; https://www.encodeproject.org/ENCBS614LRB/


title: DNase-seq from UT-7 (ENCLB259CYL)

description:
https://www.encodeproject.org/experiments/ENCSR067YMF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR067YMF
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB259CYL

source_name: Homo sapiens UT-7 cell line treated with 0.1% DMSO for 48 hours

value: male

value: 64 year

value: DSMZ

value: treatment_term_id:CHEBI:28262; treatment_term_name:DMSO; treatment_type:chemical; duration:48; duration_units:hour;

value: ENCBS315LQB at ENCODE; https://www.encodeproject.org/ENCBS315LQB/


title: DNase-seq from T47D (ENCLB161RFY)

description:
https://www.encodeproject.org/experiments/ENCSR031EOD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR031EOD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161RFY
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 0.1% dmso for 2 hours

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS254LPJ at ENCODE; https://www.encodeproject.org/ENCBS254LPJ/


title: DNase-seq from cardiac muscle cell (ENCLB778KQO)

description:
https://www.encodeproject.org/experiments/ENCSR041RRW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR041RRW
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB778KQO

source_name: Homo sapiens embryo cardiac muscle in vitro differentiated cells

value: cardiac muscle cell

value: in vitro differentiated cells

value: not collected

value: embryonic

value: unknown

value: John Stamatoyannopoulos

value: ENCBS091IJX at ENCODE; https://www.encodeproject.org/ENCBS091IJX/


title: DNase-seq from MCF-7 (ENCLB361SPX)

description:
https://www.encodeproject.org/experiments/ENCSR087DTL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR087DTL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB361SPX

source_name: Homo sapiens MCF-7 cell line treated with 1 uM bisphenol a for 2 hours

value: cell line

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS003OAR at ENCODE; https://www.encodeproject.org/ENCBS003OAR/


title: DNase-seq from T47D (ENCLB979SIC)

description:
https://www.encodeproject.org/experiments/ENCSR055VFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR055VFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB979SIC
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 100 nM methoxychlor for 2 hours

value: mammary ductal carcinoma

value: 54 year

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS854MJO at ENCODE; https://www.encodeproject.org/ENCBS854MJO/


title: DNase-seq from suppressor macrophage (ENCLB636UXU)

description:
https://www.encodeproject.org/experiments/ENCSR031CYX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR031CYX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB636UXU

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell treated with 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: primary cell

value: male

value: 40 year

value: Shelly Heimfeld

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS051YHU at ENCODE; https://www.encodeproject.org/ENCBS051YHU/


title: DNase-seq from T47D (ENCLB582UCJ)

description:
https://www.encodeproject.org/experiments/ENCSR033ETD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR033ETD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB582UCJ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 uM bisphenol a for 504 hours

value: cell line

value: female

value: adult

value: treatment_term_id:CHEBI:33216; treatment_term_name:bisphenol a; treatment_type:chemical; duration:504; duration_units:hour;

value: ENCBS709YRP at ENCODE; https://www.encodeproject.org/ENCBS709YRP/


title: DNase-seq from T47D (ENCLB145TLQ)

description:
https://www.encodeproject.org/experiments/ENCSR039AWQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR039AWQ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145TLQ
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens T47D cell line treated with 1 nM diethylstilbestrol for 120 hours

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:41922; treatment_term_name:diethylstilbestrol; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS580MTK at ENCODE; https://www.encodeproject.org/ENCBS580MTK/


title: DNase-seq from T47D (ENCLB591WGT)

description:
https://www.encodeproject.org/experiments/ENCSR033ETD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR033ETD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB591WGT

value: mammary ductal carcinoma

value: 54 year

value: ENCBS397AWP at ENCODE; https://www.encodeproject.org/ENCBS397AWP/


title: DNase-seq from MCF-7 (ENCLB826EZS)

description:
https://www.encodeproject.org/experiments/ENCSR032UZV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR032UZV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB826EZS

source_name: Homo sapiens MCF-7 cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS324NBS at ENCODE; https://www.encodeproject.org/ENCBS324NBS/


title: DNase-seq from MCF-7 (ENCLB674ZXD)

description:
https://www.encodeproject.org/experiments/ENCSR013IKT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR013IKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB674ZXD

value: ENCBS887YGU at ENCODE; https://www.encodeproject.org/ENCBS887YGU/


title: DNase-seq from MCF-7 (ENCLB465ZQY)

description:
https://www.encodeproject.org/experiments/ENCSR013IKT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR013IKT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB465ZQY

value: ENCBS314ERG at ENCODE; https://www.encodeproject.org/ENCBS314ERG/


title: DNase-seq from MCF-7 (ENCLB077HYZ)

description:
https://www.encodeproject.org/experiments/ENCSR051UHK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR051UHK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB077HYZ

value: cell line

value: ENCBS774ZBA at ENCODE; https://www.encodeproject.org/ENCBS774ZBA/


title: DNase-seq from MCF-7 (ENCLB225IEW)

description:
https://www.encodeproject.org/experiments/ENCSR010FDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR010FDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB225IEW

value: female

value: adult

value: ENCBS669QSG at ENCODE; https://www.encodeproject.org/ENCBS669QSG/


title: Flow-FISH CRISPR screen from K562 (ENCLB839FRE)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB839FRE
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS343SXI at ENCODE; https://www.encodeproject.org/ENCBS343SXI/


title: DNase-seq from T47D (ENCLB342KVR)

description:
https://www.encodeproject.org/experiments/ENCSR026QGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR026QGE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB342KVR
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: mammary ductal carcinoma

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS965SEQ at ENCODE; https://www.encodeproject.org/ENCBS965SEQ/


title: proliferation CRISPR screen from K562 (ENCLB543BBG)

description:
https://www.encodeproject.org/experiments/ENCSR397CXJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Tiling, dCas9-VPR/CRISPRa proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR397CXJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB543BBG

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRa (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 21 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/efd73756-33ac-41e4-839d-949c78bbc8f6/@@download/attachment/greenleaf_gata1_myb_zmynd8_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS409YJF at ENCODE; https://www.encodeproject.org/ENCBS409YJF/


title: DNase-seq from MCF-7 (ENCLB170WFG)

description:
https://www.encodeproject.org/experiments/ENCSR010FDB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR010FDB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB170WFG
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS173ZTA at ENCODE; https://www.encodeproject.org/ENCBS173ZTA/


title: Flow-FISH CRISPR screen from K562 (ENCLB449EUR)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB449EUR
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: ENCBS476SVK at ENCODE; https://www.encodeproject.org/ENCBS476SVK/


title: proliferation CRISPR screen from K562 (ENCLB025SBM)

description:
https://www.encodeproject.org/experiments/ENCSR397CXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Tiling, dCas9-VPR/CRISPRa proliferation screen at the GATA1, MYB, and ZMYND8 loci
experiment encode accession: ENCSR397CXJ
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB025SBM

value: 53 year

value: ENCBS074QCT at ENCODE; https://www.encodeproject.org/ENCBS074QCT/


title: DNase-seq from MCF-7 (ENCLB960QYW)

description:
https://www.encodeproject.org/experiments/ENCSR002YFO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR002YFO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB960QYW

source_name: Homo sapiens MCF-7 cell line treated with 100 nM methoxychlor for 120 hours

value: John Stamatoyannopoulos, UW

value: ATCC

value: treatment_term_id:CHEBI:6842; treatment_term_name:methoxychlor; treatment_type:chemical; duration:120; duration_units:hour;

value: ENCBS857GAB at ENCODE; https://www.encodeproject.org/ENCBS857GAB/


title: Flow-FISH CRISPR screen from K562 (ENCLB375EGG)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB375EGG
size range: 200-210

value: Jesse Engreitz, Stanford

value: ENCBS343SXI at ENCODE; https://www.encodeproject.org/ENCBS343SXI/


title: Flow-FISH CRISPR screen from K562 (ENCLB406VAL)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB406VAL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB238HBO)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB238HBO
size range: 200-210

value: ENCBS817TWD at ENCODE; https://www.encodeproject.org/ENCBS817TWD/


title: Flow-FISH CRISPR screen from K562 (ENCLB210HLG)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB210HLG
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB793HXQ)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB793HXQ
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB877NJA)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB877NJA
size range: 200-210


title: Control CRISPR screen from HCT116 (ENCLB022KRZ)

description:
https://www.encodeproject.org/experiments/ENCSR393DOW/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR393DOW
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB022KRZ
size range: 710-720

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens HCT116 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: colorectal carcinoma

value: 48 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS061VIU at ENCODE; https://www.encodeproject.org/ENCBS061VIU/


title: Flow-FISH CRISPR screen from K562 (ENCLB424KSQ)

description:
https://www.encodeproject.org/experiments/ENCSR394QIN/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR394QIN
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB424KSQ
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: adult


title: Flow-FISH CRISPR screen from Jurkat (ENCLB663JNY)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB663JNY
size range: 200-210

source_name: Homo sapiens Jurkat cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: ENCBS699AOO at ENCODE; https://www.encodeproject.org/ENCBS699AOO/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB428SCD)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB428SCD
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS046HLD at ENCODE; https://www.encodeproject.org/ENCBS046HLD/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB442WVE)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB442WVE
size range: 200-210

value: cell line

value: male


title: DNase-seq from CD4-positive, CD25-positive, alpha-beta regulatory T cell (ENCLB498YAQ)

description:
https://www.encodeproject.org/experiments/ENCSR389VFA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389VFA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB498YAQ

source_name: Homo sapiens male adult (42 years) CD4-positive, CD25-positive, alpha-beta regulatory T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS319TVT at ENCODE; https://www.encodeproject.org/ENCBS319TVT/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB632VIP)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB632VIP
size range: 200-210


title: Flow-FISH CRISPR screen from Jurkat (ENCLB240KHK)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB240KHK
size range: 200-210


title: Control CRISPR screen from HCT116 (ENCLB558RBU)

description:
https://www.encodeproject.org/experiments/ENCSR393DOW/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR393DOW
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB558RBU
size range: 710-720

value: colorectal carcinoma

value: adult

value: 48 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS457RFO at ENCODE; https://www.encodeproject.org/ENCBS457RFO/


title: Flow-FISH CRISPR screen from K562 (ENCLB370BPX)

description:
https://www.encodeproject.org/experiments/ENCSR389DPQ/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR389DPQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB370BPX
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS060BXG at ENCODE; https://www.encodeproject.org/ENCBS060BXG/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB803RCX)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB803RCX
size range: 200-210

value: Jurkat

value: cell line

value: male

value: acute T cell leukemia

value: child

value: 14 year

value: ATCC

value: ENCBS046HLD at ENCODE; https://www.encodeproject.org/ENCBS046HLD/


title: Flow-FISH CRISPR screen from K562 (ENCLB097LWI)

description:
https://www.encodeproject.org/experiments/ENCSR389DPQ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR389DPQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB097LWI
size range: 200-210

value: adult


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB220BDC)

description:
https://www.encodeproject.org/experiments/ENCSR387WVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR387WVY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB220BDC

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-15 for 4 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS070PTV at ENCODE; https://www.encodeproject.org/ENCBS070PTV/


title: Flow-FISH CRISPR screen from K562 (ENCLB531JOC)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB531JOC
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ENCBS945ZGU at ENCODE; https://www.encodeproject.org/ENCBS945ZGU/


title: Flow-FISH CRISPR screen from K562 (ENCLB047QTS)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB047QTS
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from K562 (ENCLB197UAU)

description:
https://www.encodeproject.org/experiments/ENCSR389DPQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR389DPQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB197UAU
size range: 200-210

value: ENCBS060BXG at ENCODE; https://www.encodeproject.org/ENCBS060BXG/


title: Flow-FISH CRISPR screen from K562 (ENCLB984QJI)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB984QJI
size range: 200-210

value: ATCC


title: DNase-seq from HUDEP-2 (ENCLB161OCK)

description:
https://www.encodeproject.org/experiments/ENCSR391LFS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR391LFS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB161OCK

source_name: Homo sapiens HUDEP-2 cell line

value: male

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS141VOR at ENCODE; https://www.encodeproject.org/ENCBS141VOR/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB741JPZ)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB741JPZ
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: ENCBS699AOO at ENCODE; https://www.encodeproject.org/ENCBS699AOO/


title: Flow-FISH CRISPR screen from K562 (ENCLB177MJC)

description:
https://www.encodeproject.org/experiments/ENCSR389DPQ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR389DPQ
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB177MJC
size range: 200-210

value: female

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB854OEI)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB854OEI
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS777XAL at ENCODE; https://www.encodeproject.org/ENCBS777XAL/


title: Flow-FISH CRISPR screen from K562 (ENCLB380VGI)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB380VGI
size range: 200-210

value: cell line

value: Jesse Engreitz, Stanford

value: ENCBS945ZGU at ENCODE; https://www.encodeproject.org/ENCBS945ZGU/


title: Flow-FISH CRISPR screen from K562 (ENCLB317RLT)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB317RLT
size range: 200-210

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB892BVC)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB892BVC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB977JOD)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB977JOD
size range: 200-210

value: ENCBS490JAM at ENCODE; https://www.encodeproject.org/ENCBS490JAM/


title: Flow-FISH CRISPR screen from K562 (ENCLB248PPO)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB248PPO
size range: 200-210

value: ENCBS956CGT at ENCODE; https://www.encodeproject.org/ENCBS956CGT/


title: Flow-FISH CRISPR screen from K562 (ENCLB916VLD)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB916VLD
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB790TFF)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB790TFF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB900KSF)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB900KSF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB844IPF)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB844IPF
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB317MGK)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB317MGK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB970CHH)

description:
https://www.encodeproject.org/experiments/ENCSR387DZX/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR387DZX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB970CHH
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB346ASA)

description:
https://www.encodeproject.org/experiments/ENCSR382DPL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR382DPL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB346ASA

source_name: Homo sapiens female adult (33 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS431IPT at ENCODE; https://www.encodeproject.org/ENCBS431IPT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB952JRD)

description:
https://www.encodeproject.org/experiments/ENCSR384XZK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR384XZK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB952JRD

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: male

value: 42 year

value: ENCBS048VHL at ENCODE; https://www.encodeproject.org/ENCBS048VHL/


title: DNase-seq from activated T-cell (ENCLB626MBH)

description:
https://www.encodeproject.org/experiments/ENCSR386VAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR386VAP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB626MBH

source_name: Homo sapiens male adult (38 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: activated T-cell

value: adult

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS290BRH at ENCODE; https://www.encodeproject.org/ENCBS290BRH/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB670VBW)

description:
https://www.encodeproject.org/experiments/ENCSR384XZK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR384XZK
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB670VBW

value: ENCBS207PQD at ENCODE; https://www.encodeproject.org/ENCBS207PQD/


title: Flow-FISH CRISPR screen from K562 (ENCLB673YDO)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB673YDO
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS669TCD at ENCODE; https://www.encodeproject.org/ENCBS669TCD/


title: DNase-seq from T-cell (ENCLB790ILP)

description:
https://www.encodeproject.org/experiments/ENCSR385UWL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR385UWL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB790ILP

source_name: Homo sapiens male adult (38 years) T-cell primary cell

value: T-cell

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS749WBW at ENCODE; https://www.encodeproject.org/ENCBS749WBW/


title: Flow-FISH CRISPR screen from K562 (ENCLB075EUE)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB075EUE
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB070WLO)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB070WLO
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB275GHV)

description:
https://www.encodeproject.org/experiments/ENCSR381PYB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR381PYB
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB275GHV

source_name: Homo sapiens female adult (26 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: 26 year

value: Shelly Heimfeld

value: ENCBS434OSL at ENCODE; https://www.encodeproject.org/ENCBS434OSL/


title: Flow-FISH CRISPR screen from K562 (ENCLB322JJQ)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB322JJQ
size range: 200-210

value: cell line

value: ENCBS691AGQ at ENCODE; https://www.encodeproject.org/ENCBS691AGQ/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB793XRF)

description:
https://www.encodeproject.org/experiments/ENCSR382DPL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR382DPL
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB793XRF

value: female

value: 33 year

value: ENCBS382KGY at ENCODE; https://www.encodeproject.org/ENCBS382KGY/


title: Flow-FISH CRISPR screen from K562 (ENCLB338MAR)

description:
https://www.encodeproject.org/experiments/ENCSR386RWO/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR386RWO
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB338MAR
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS956CGT at ENCODE; https://www.encodeproject.org/ENCBS956CGT/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB185CXT)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB185CXT
size range: 200-210

source_name: Homo sapiens THP-1 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: male

value: acute monocytic leukemia

value: child

value: 1 year

value: ENCBS870ZCD at ENCODE; https://www.encodeproject.org/ENCBS870ZCD/


title: Flow-FISH CRISPR screen from K562 (ENCLB368KMQ)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB368KMQ
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from THP-1 (ENCLB389LPY)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB389LPY
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB176TQE)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB176TQE
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB047UCA)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB047UCA
size range: 200-210

value: ENCBS119JIT at ENCODE; https://www.encodeproject.org/ENCBS119JIT/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB263FDG)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB263FDG
size range: 200-210

value: cell line


title: Flow-FISH CRISPR screen from THP-1 (ENCLB334KYV)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB334KYV
size range: 200-210


title: Flow-FISH CRISPR screen from THP-1 (ENCLB154OZA)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB154OZA
size range: 200-210


title: DNase-seq from stimulated activated naive CD4-positive, alpha-beta T cell (ENCLB515MBM)

description:
https://www.encodeproject.org/experiments/ENCSR384YHO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR384YHO
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB515MBM

source_name: Homo sapiens male adult (42 years) stimulated activated naive CD4-positive, alpha-beta T primary cell treated with 50 U/mL Interleukin-2 for 16 hours

value: primary cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:16; duration_units:hour;

value: ENCBS855EQJ at ENCODE; https://www.encodeproject.org/ENCBS855EQJ/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB581YYT)

description:
https://www.encodeproject.org/experiments/ENCSR380XNG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR380XNG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB581YYT

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours

value: 38 year

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour;

value: ENCBS258TLS at ENCODE; https://www.encodeproject.org/ENCBS258TLS/


title: Flow-FISH CRISPR screen from K562 (ENCLB552PHD)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB552PHD
size range: 200-210

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS669TCD at ENCODE; https://www.encodeproject.org/ENCBS669TCD/


title: Flow-FISH CRISPR screen from K562 (ENCLB872JNJ)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB872JNJ
size range: 200-210

value: adult

value: ENCBS691AGQ at ENCODE; https://www.encodeproject.org/ENCBS691AGQ/


title: DNase-seq from activated CD4-positive, alpha-beta T cell (ENCLB786ARX)

description:
https://www.encodeproject.org/experiments/ENCSR595VTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595VTN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB786ARX

source_name: Homo sapiens male adult (38 years) activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour

value: primary cell

value: male

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour; treatment_term_id:UniProtKB:P01375; treatment_term_name:TNF-alpha; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS509TBB at ENCODE; https://www.encodeproject.org/ENCBS509TBB/


title: Flow-FISH CRISPR screen from K562 (ENCLB277KQH)

description:
https://www.encodeproject.org/experiments/ENCSR381LLB/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR381LLB
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB277KQH
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: cell line


title: DNase-seq from globus pallidus (ENCLB500EZM)

description:
https://www.encodeproject.org/experiments/ENCSR599MFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR599MFU
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-30
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB500EZM

source_name: Homo sapiens female adult (90 or above years) globus pallidus tissue

value: globus pallidus

value: tissue

value: 90 or above year

value: John Stamatoyannopoulos, UW

value: Thomas Montine

value: ENCBS412TQU at ENCODE; https://www.encodeproject.org/ENCBS412TQU/


title: DNase-seq from immature natural killer cell (ENCLB122YTI)

description:
https://www.encodeproject.org/experiments/ENCSR376VHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR376VHG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB122YTI

source_name: Homo sapiens female adult (45 years) immature natural killer primary cell

value: immature natural killer cell

value: female

value: 45 year

value: Shelly Heimfeld

value: ENCBS098LYO at ENCODE; https://www.encodeproject.org/ENCBS098LYO/


title: Flow-FISH CRISPR screen from Jurkat (ENCLB121PVB)

description:
https://www.encodeproject.org/experiments/ENCSR390VJM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR390VJM
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB121PVB
size range: 200-210

value: Jurkat

value: acute T cell leukemia

value: child

value: 14 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS046HLD at ENCODE; https://www.encodeproject.org/ENCBS046HLD/


title: DNase-seq from suprapubic skin (ENCLB215EID)

description:
https://www.encodeproject.org/experiments/ENCSR598JCD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR598JCD
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB215EID

source_name: Homo sapiens male adult (37 years) suprapubic skin tissue

value: suprapubic skin

value: tissue

value: male

value: adult

value: 37 year

value: Kristin Ardlie

value: ENCBS517AWO at ENCODE; https://www.encodeproject.org/ENCBS517AWO/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB675YYO)

description:
https://www.encodeproject.org/experiments/ENCSR370SDS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR370SDS
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB675YYO

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: primary cell

value: female

value: 34 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS141LJX at ENCODE; https://www.encodeproject.org/ENCBS141LJX/


title: Flow-FISH CRISPR screen from THP-1 (ENCLB673PHH)

description:
https://www.encodeproject.org/experiments/ENCSR381IXT/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR381IXT
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2022-07-11
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB673PHH
size range: 200-210

value: cell line

value: acute monocytic leukemia

value: child

value: 1 year

value: Jesse Engreitz, Stanford

value: ENCBS119JIT at ENCODE; https://www.encodeproject.org/ENCBS119JIT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB415TWN)

description:
https://www.encodeproject.org/experiments/ENCSR375GZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR375GZY
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB415TWN

value: adult

value: 33 year

value: ENCBS989VEL at ENCODE; https://www.encodeproject.org/ENCBS989VEL/


title: Flow-FISH CRISPR screen from K562 (ENCLB807YIX)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB807YIX
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ATCC

value: ENCBS245KZE at ENCODE; https://www.encodeproject.org/ENCBS245KZE/


title: DNase-seq from immature natural killer cell (ENCLB021JWB)

description:
https://www.encodeproject.org/experiments/ENCSR375TBE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR375TBE
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB021JWB

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell

value: immature natural killer cell

value: primary cell

value: male

value: 30 year

value: Shelly Heimfeld

value: ENCBS159WCC at ENCODE; https://www.encodeproject.org/ENCBS159WCC/


title: DNase-seq from activated T-cell (ENCLB496FAF)

description:
https://www.encodeproject.org/experiments/ENCSR593TQV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR593TQV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB496FAF

source_name: Homo sapiens male adult (42 years) activated T-cell primary cell treated with anti-CD3 and anti-CD28 coated beads for 1 hour

value: activated T-cell

value: 42 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:1; duration_units:hour;

value: ENCBS500PRG at ENCODE; https://www.encodeproject.org/ENCBS500PRG/


title: DNase-seq from suppressor macrophage (ENCLB771JQV)

description:
https://www.encodeproject.org/experiments/ENCSR593ZPX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR593ZPX
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB771JQV
instrument models: Illumina HiSeq 4000,Illumina NextSeq 500

source_name: Homo sapiens male adult (24 years) suppressor macrophage primary cell treated with 100 ng/mL lipopolysaccharide for 4 hours, 0.1% dmso for 4.5 hours

value: suppressor macrophage

value: adult

value: 24 year

value: treatment_term_id:CHEBI:16412; treatment_term_name:lipopolysaccharide; treatment_type:chemical; duration:4; duration_units:hour; treatment_term_id:CHEBI:28262; treatment_term_name:dmso; treatment_type:chemical; duration:4.5; duration_units:hour;

value: ENCBS256ICR at ENCODE; https://www.encodeproject.org/ENCBS256ICR/


title: Flow-FISH CRISPR screen from K562 (ENCLB103YMU)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB103YMU
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS432MLO at ENCODE; https://www.encodeproject.org/ENCBS432MLO/


title: Flow-FISH CRISPR screen from K562 (ENCLB833GNX)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB833GNX
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB417VFE)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB417VFE
size range: 200-210

value: ENCBS245KZE at ENCODE; https://www.encodeproject.org/ENCBS245KZE/


title: DNase-seq from activated CD8-positive, alpha-beta memory T cell (ENCLB451SPE)

description:
https://www.encodeproject.org/experiments/ENCSR595BVP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595BVP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB451SPE

source_name: Homo sapiens female adult (33 years) activated CD8-positive, alpha-beta memory T primary cell treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours

value: primary cell

value: 33 year

value: John Stamatoyannopoulos, UW

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:48; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:48; duration_units:hour;

value: ENCBS662KUS at ENCODE; https://www.encodeproject.org/ENCBS662KUS/


title: proliferation CRISPR screen from K562 (ENCLB942SXD)

description:
https://www.encodeproject.org/experiments/ENCSR371TIR/
***************
biological replicate number: 1
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR371TIR
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB942SXD

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA) treated with 1 ug/mL Puromycin for 96 hours, 7 days post-nucleic acid delivery time

extract_protocol:
general protocol: https://www.encodeproject.org/documents/3e3b5605-6931-4af2-aa69-e669d91349b6/@@download/attachment/greenleaf_ctcf_crispr_screen_protocol.pdf
extraction method: QIAGEN DNeasy Blood & Tissue Kit

value: adult

value: Will Greenleaf, Stanford

value: Michael Bassik, Stanford

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:96; duration_units:hour;

value: ENCBS428QSO at ENCODE; https://www.encodeproject.org/ENCBS428QSO/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB250VNO)

description:
https://www.encodeproject.org/experiments/ENCSR591ZIA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR591ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB250VNO

source_name: Homo sapiens female adult (33 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours

value: female

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P60568; treatment_term_name:Interleukin-2; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS735GTF at ENCODE; https://www.encodeproject.org/ENCBS735GTF/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB633IOA)

description:
https://www.encodeproject.org/experiments/ENCSR591ZIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR591ZIA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB633IOA

value: ENCBS886QNQ at ENCODE; https://www.encodeproject.org/ENCBS886QNQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB516OIE)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB516OIE
size range: 200-210

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS432MLO at ENCODE; https://www.encodeproject.org/ENCBS432MLO/


title: proliferation CRISPR screen from K562 (ENCLB952ZUM)

description:
https://www.encodeproject.org/experiments/ENCSR371TIR/
***************
biological replicate number: 2
technical replicate number: 1
description: Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors
experiment encode accession: ENCSR371TIR
assay title: proliferation CRISPR screen
assembly: GRCh38
encode release date: 2021-12-14
lab: Will Greenleaf, Stanford
library encode accession: ENCLB952ZUM

value: ENCBS728YBA at ENCODE; https://www.encodeproject.org/ENCBS728YBA/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB852JJO)

description:
https://www.encodeproject.org/experiments/ENCSR581EVP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581EVP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB852JJO

source_name: Homo sapiens female adult (34 years) CD4-positive, alpha-beta T primary cell treated with 100 ng/mL Interleukin-4 for 24 hours

value: CD4-positive, alpha-beta T cell

value: primary cell

value: adult

value: 34 year

value: John Stamatoyannopoulos, UW

value: treatment_term_id:UniProtKB:P05112; treatment_term_name:Interleukin-4; treatment_type:protein; duration:24; duration_units:hour;

value: ENCBS788EFZ at ENCODE; https://www.encodeproject.org/ENCBS788EFZ/


title: DNase-seq from activated naive CD4-positive, alpha-beta T cell (ENCLB085MAI)

description:
https://www.encodeproject.org/experiments/ENCSR588SBG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR588SBG
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB085MAI

source_name: Homo sapiens male adult (42 years) activated naive CD4-positive, alpha-beta T primary cell

value: male

value: 42 year

value: AllCells

value: ENCBS085SBV at ENCODE; https://www.encodeproject.org/ENCBS085SBV/


title: Flow-FISH CRISPR screen from K562 (ENCLB643WKZ)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB643WKZ
size range: 200-210

value: cell line

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS245KZE at ENCODE; https://www.encodeproject.org/ENCBS245KZE/


title: DNase-seq from HUDEP-2 (ENCLB866FUA)

description:
https://www.encodeproject.org/experiments/ENCSR586LND/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR586LND
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB866FUA

source_name: Homo sapiens HUDEP-2 cell line

value: unknown

value: Riken BioResource Cell Bank

value: ENCBS332DHO at ENCODE; https://www.encodeproject.org/ENCBS332DHO/


title: DNase-seq from immature natural killer cell (ENCLB270HFJ)

description:
https://www.encodeproject.org/experiments/ENCSR582EPN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR582EPN
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB270HFJ

source_name: Homo sapiens male adult (30 years) immature natural killer primary cell treated with 100 ng/mL Interleukin-15 for 1 hour

value: immature natural killer cell

value: primary cell

value: 30 year

value: Shelly Heimfeld

value: treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:1; duration_units:hour;

value: ENCBS361HTY at ENCODE; https://www.encodeproject.org/ENCBS361HTY/


title: Flow-FISH CRISPR screen from K562 (ENCLB136FWS)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB136FWS
size range: 200-210

value: adult

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS432MLO at ENCODE; https://www.encodeproject.org/ENCBS432MLO/


title: Flow-FISH CRISPR screen from K562 (ENCLB148GBM)

description:
https://www.encodeproject.org/experiments/ENCSR368YJH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR368YJH
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB148GBM
size range: 200-210

value: cell line

value: female


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB569RYE)

description:
https://www.encodeproject.org/experiments/ENCSR368MTT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR368MTT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB569RYE

source_name: Homo sapiens male adult (38 years) stimulated activated CD4-positive, alpha-beta T primary cell treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours

value: male

value: 38 year

value: John Stamatoyannopoulos, UW

value: AllCells

value: treatment_term_name:anti-CD3 and anti-CD28 coated beads; treatment_type:antibody; duration:4; duration_units:hour; treatment_term_id:UniProtKB:P40933; treatment_term_name:Interleukin-15; treatment_type:protein; duration:4; duration_units:hour;

value: ENCBS530HIH at ENCODE; https://www.encodeproject.org/ENCBS530HIH/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB308IYF)

description:
https://www.encodeproject.org/experiments/ENCSR368MTT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR368MTT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB308IYF

value: primary cell

value: ENCBS561KYV at ENCODE; https://www.encodeproject.org/ENCBS561KYV/


title: DNase-seq from stimulated activated CD4-positive, alpha-beta T cell (ENCLB884ZBT)

description:
https://www.encodeproject.org/experiments/ENCSR368MTT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR368MTT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB884ZBT

value: ENCBS715ARH at ENCODE; https://www.encodeproject.org/ENCBS715ARH/


title: DNase-seq from GM12878 (ENCLB278WTB)

description:
https://www.encodeproject.org/experiments/ENCSR581CCT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR581CCT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB278WTB

source_name: Homo sapiens GM12878 cell line

value: unknown

value: Coriell

value: ENCBS049HWV at ENCODE; https://www.encodeproject.org/ENCBS049HWV/


title: DNase-seq from GM12878 (ENCLB997AMQ)

description:
https://www.encodeproject.org/experiments/ENCSR581CCT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR581CCT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB997AMQ

value: adult

value: ENCBS545WLR at ENCODE; https://www.encodeproject.org/ENCBS545WLR/


title: Flow-FISH CRISPR screen from K562 (ENCLB457ZIJ)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB457ZIJ
size range: 200-210

source_name: Homo sapiens K562 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (sgRNA)

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS034RJJ at ENCODE; https://www.encodeproject.org/ENCBS034RJJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB015EMK)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB015EMK
size range: 200-210

value: cell line

value: female

value: ENCBS083THQ at ENCODE; https://www.encodeproject.org/ENCBS083THQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB155ANC)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB155ANC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB563UFC)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB563UFC
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB781KGL)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB781KGL
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB350PQR)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB350PQR
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB952MSY)

description:
https://www.encodeproject.org/experiments/ENCSR366AJP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR366AJP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB952MSY
size range: 200-210

value: ENCBS409OFF at ENCODE; https://www.encodeproject.org/ENCBS409OFF/


title: DNase-seq from GM12878 (ENCLB192XZV)

description:
https://www.encodeproject.org/experiments/ENCSR581CCT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581CCT
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-19
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB192XZV

value: John Stamatoyannopoulos, UW

value: ENCBS239QNZ at ENCODE; https://www.encodeproject.org/ENCBS239QNZ/


title: Flow-FISH CRISPR screen from K562 (ENCLB362HVK)

description:
https://www.encodeproject.org/experiments/ENCSR366AJP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR366AJP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB362HVK
size range: 200-210


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB074NKL)

description:
https://www.encodeproject.org/experiments/ENCSR580MXV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR580MXV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB074NKL

source_name: Homo sapiens female adult (25 years) effector memory CD4-positive, alpha-beta T primary cell

value: primary cell

value: 25 year

value: AllCells

value: ENCBS503FQJ at ENCODE; https://www.encodeproject.org/ENCBS503FQJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB355QWB)

description:
https://www.encodeproject.org/experiments/ENCSR366AJP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR366AJP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB355QWB
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB409BJO)

description:
https://www.encodeproject.org/experiments/ENCSR366AJP/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR366AJP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB409BJO
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB524ZMI)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB524ZMI
size range: 200-210

value: ENCBS942JVT at ENCODE; https://www.encodeproject.org/ENCBS942JVT/


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB750OXA)

description:
https://www.encodeproject.org/experiments/ENCSR579VQJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR579VQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB750OXA

source_name: Homo sapiens male adult (42 years) CD4-positive, alpha-beta T primary cell

value: CD4-positive, alpha-beta T cell

value: male

value: 42 year

value: ENCBS827RDS at ENCODE; https://www.encodeproject.org/ENCBS827RDS/


title: Flow-FISH CRISPR screen from K562 (ENCLB618RMK)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB618RMK
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC

value: ENCBS854NQR at ENCODE; https://www.encodeproject.org/ENCBS854NQR/


title: Flow-FISH CRISPR screen from K562 (ENCLB542VXO)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB542VXO
size range: 200-210

value: cell line

value: female


title: Flow-FISH CRISPR screen from K562 (ENCLB699UGQ)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB699UGQ
size range: 200-210

value: ENCBS381WAT at ENCODE; https://www.encodeproject.org/ENCBS381WAT/


title: Flow-FISH CRISPR screen from K562 (ENCLB151OXS)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB151OXS
size range: 200-210

value: ENCBS034RJJ at ENCODE; https://www.encodeproject.org/ENCBS034RJJ/


title: Flow-FISH CRISPR screen from K562 (ENCLB888RCO)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB888RCO
size range: 200-210

value: ENCBS140WLD at ENCODE; https://www.encodeproject.org/ENCBS140WLD/


title: Flow-FISH CRISPR screen from K562 (ENCLB816CZK)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB816CZK
size range: 200-210


title: DNase-seq from CD4-positive, alpha-beta T cell (ENCLB965DEU)

description:
https://www.encodeproject.org/experiments/ENCSR579VQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR579VQJ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB965DEU

value: primary cell

value: John Stamatoyannopoulos, UW

value: AllCells

value: ENCBS761UZQ at ENCODE; https://www.encodeproject.org/ENCBS761UZQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB703KTF)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB703KTF
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB309BTK)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB309BTK
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB610PFF)

description:
https://www.encodeproject.org/experiments/ENCSR580OSP/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR580OSP
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB610PFF
size range: 200-210

value: ENCBS083THQ at ENCODE; https://www.encodeproject.org/ENCBS083THQ/


title: Flow-FISH CRISPR screen from K562 (ENCLB515PWX)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB515PWX
size range: 200-210

value: ENCBS942JVT at ENCODE; https://www.encodeproject.org/ENCBS942JVT/


title: Flow-FISH CRISPR screen from K562 (ENCLB983ZZS)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB983ZZS
size range: 200-210

value: chronic myelogenous leukemia (CML)


title: Flow-FISH CRISPR screen from K562 (ENCLB526LSA)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 4
technical replicate number: 2
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB526LSA
size range: 200-210

value: 53 year

value: ENCBS494YDO at ENCODE; https://www.encodeproject.org/ENCBS494YDO/


title: Flow-FISH CRISPR screen from K562 (ENCLB897OYE)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB897OYE
size range: 200-210

value: Jesse Engreitz, Stanford

value: ATCC


title: DNase-seq from effector memory CD4-positive, alpha-beta T cell (ENCLB426DWU)

description:
https://www.encodeproject.org/experiments/ENCSR580MXV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR580MXV
assay title: DNase-seq
assembly: GRCh38
encode release date: 2025-09-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB426DWU

value: 25 year

value: ENCBS895LSN at ENCODE; https://www.encodeproject.org/ENCBS895LSN/


title: Flow-FISH CRISPR screen from K562 (ENCLB695NXB)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB695NXB
size range: 200-210

value: cell line

value: female

value: ENCBS845MLM at ENCODE; https://www.encodeproject.org/ENCBS845MLM/


title: Flow-FISH CRISPR screen from K562 (ENCLB909PYI)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 4
technical replicate number: 4
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB909PYI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB456KLP)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 3
technical replicate number: 3
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB456KLP
size range: 200-210

value: ENCBS386WJX at ENCODE; https://www.encodeproject.org/ENCBS386WJX/


title: Flow-FISH CRISPR screen from K562 (ENCLB616BIE)

description:
https://www.encodeproject.org/experiments/ENCSR579FRW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR579FRW
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB616BIE
size range: 200-210

value: ENCBS381WAT at ENCODE; https://www.encodeproject.org/ENCBS381WAT/


title: Flow-FISH CRISPR screen from K562 (ENCLB194UVM)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB194UVM
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB350WRI)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 4
technical replicate number: 3
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB350WRI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB384APG)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 3
technical replicate number: 4
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB384APG
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB885QUG)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB885QUG
size range: 200-210

value: ENCBS237PKR at ENCODE; https://www.encodeproject.org/ENCBS237PKR/


title: Flow-FISH CRISPR screen from K562 (ENCLB938YNH)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB938YNH
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB346OKA)

description:
https://www.encodeproject.org/experiments/ENCSR363OEF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR363OEF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB346OKA
size range: 200-210

value: ENCBS113HOU at ENCODE; https://www.encodeproject.org/ENCBS113HOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB712FZF)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 3
technical replicate number: 2
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB712FZF
size range: 200-210

value: adult


title: Flow-FISH CRISPR screen from K562 (ENCLB622NCI)

description:
https://www.encodeproject.org/experiments/ENCSR363OEF/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR363OEF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB622NCI
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB183TYL)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB183TYL
size range: 200-210


title: Control CRISPR screen from HepG2 (ENCLB860YHP)

description:
https://www.encodeproject.org/experiments/ENCSR362QSD/
***************
biological replicate number: 1
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR362QSD
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB860YHP
size range: 710-720

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using transduction, genetically modified using CRISPRi (pgRNA) 0 days after the sample was treated with 2 ug/mL Puromycin for 2 days, 0.2 ug/mL Puromycin for 2 days

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Bing Ren, UCSD

value: treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day; treatment_term_id:CHEBI:17939; treatment_term_name:Puromycin; treatment_type:chemical; duration:2; duration_units:day;

value: ENCBS468YPT at ENCODE; https://www.encodeproject.org/ENCBS468YPT/


title: Flow-FISH CRISPR screen from K562 (ENCLB316WHZ)

description:
https://www.encodeproject.org/experiments/ENCSR363OEF/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR363OEF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB316WHZ
size range: 200-210

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Jesse Engreitz, Stanford

value: ATCC


title: Flow-FISH CRISPR screen from K562 (ENCLB815UNS)

description:
https://www.encodeproject.org/experiments/ENCSR578WTE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR578WTE
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB815UNS
size range: 200-210

value: cell line

value: female

value: ENCBS063ATK at ENCODE; https://www.encodeproject.org/ENCBS063ATK/


title: Flow-FISH CRISPR screen from K562 (ENCLB923NSX)

description:
https://www.encodeproject.org/experiments/ENCSR361FSA/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR361FSA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB923NSX
size range: 200-210

value: ENCBS878ZBK at ENCODE; https://www.encodeproject.org/ENCBS878ZBK/


title: Control CRISPR screen from HepG2 (ENCLB313DNY)

description:
https://www.encodeproject.org/experiments/ENCSR362QSD/
***************
biological replicate number: 2
technical replicate number: 1
description: Growth-based CRISPR screen targeting genomic regions near MYC and MYB genes.
experiment encode accession: ENCSR362QSD
assay title: Control CRISPR screen
possible controls: ENCSR772AWX
encode release date: 2020-08-06
lab: Bing Ren, UCSD
library encode accession: ENCLB313DNY
size range: 710-720

value: ENCBS613DXG at ENCODE; https://www.encodeproject.org/ENCBS613DXG/


title: Flow-FISH CRISPR screen from K562 (ENCLB955OBT)

description:
https://www.encodeproject.org/experiments/ENCSR363OEF/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR363OEF
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB955OBT
size range: 200-210

value: adult

value: ENCBS113HOU at ENCODE; https://www.encodeproject.org/ENCBS113HOU/


title: Flow-FISH CRISPR screen from K562 (ENCLB418RVM)

description:
https://www.encodeproject.org/experiments/ENCSR579DCX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR579DCX
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB418RVM
size range: 200-210

value: ENCBS237PKR at ENCODE; https://www.encodeproject.org/ENCBS237PKR/


title: Flow-FISH CRISPR screen from K562 (ENCLB592TWV)

description:
https://www.encodeproject.org/experiments/ENCSR361FSA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR361FSA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB592TWV
size range: 200-210


title: Flow-FISH CRISPR screen from K562 (ENCLB411JQC)

description:
https://www.encodeproject.org/experiments/ENCSR361FSA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR361FSA
assay title: Flow-FISH CRISPR screen
assembly: hg19
encode release date: 2021-01-07
lab: Jesse Engreitz, Stanford
library encode accession: ENCLB411JQC
size range: 200-210