title: total RNA-seq from HG03246 (ENCLB615CHO)

description:
https://www.encodeproject.org/experiments/ENCSR578BUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR578BUG
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB615CHO
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03246 cell line

value: HG03246 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS146FVY at ENCODE; https://www.encodeproject.org/ENCBS146FVY/


title: V082-CGND-HRA-02436-B

status: Public on Jul 24 2026

type: SRA

city: New York

first: Christopher

last: Jackson

state: NY

address: 101 Avenue of the Americas

department: Center for the Genomics of Neurodegenerative Disease

country: USA

institute: New York Genome Center

description: Library name: V082-CGND-HRA-02436-B

library_source: transcriptomic

data_processing:
Each sequenced 10X Visium library was aligned to a standard reference genome (hg38; GENCODE v32/Ensembl98) and counted with spaceranger
Assembly: hg38
Supplementary files format and content: filtered_feature_bc_matrix.h5 file contains spaceranger counts in spaceranger h5 format
Supplementary files format and content: spatial.tar file contains slide images and spot & scaling metadata from spaceranger outs/spatial
Library strategy: Spatial Transcriptomics

molecule: polyA RNA

organism: Homo sapiens

extract_protocol:
Frozen tissue blocks, kept at -80°C prior to processing, were equilibrated to -16°C inside a Leica CM3050S cryostat, embedded in Tissue Plus OCT Compound (Fisher Healthcare, #4585), and sectioned in a perpendicular orientation with regard to the pial surface. Tissue sections (10 µm-thick) from quality controlled blocks (H&E staining and imaging) were collected onto prechilled Visium Spatial Gene Expression Slides (10X Genomics, #1000185) while briefly warming the back of the slide with a gloved finger to improve adherence and minimize artifacts.
Visium libraries were prepared using unique Illumina-compatible PCR primers with Dual Index Kit TT Set A (10X Genomics, #1000215). Size distribution profiles of the final libraries were assessed by running Agilent High Sensitivity DNA chips (#5067-4626) on a 2100 Bioanalyzer system (Agilent, #G2939BA). Libraries outside the expected range (450 ± 50 bp) or that contained adapter dimer contaminants were discarded and reprocessed. Total yields were initially measured on a Qubit 3.0 fluorometer before final qPCR quantification (KAPA Library Quantification Kit for Illumina Platforms, KAPA Biosystems, #KK4824).

tag: tissue

tag: subject id

tag: diagnosis

value: ALS

tag: pmi

tag: Sex

value: M

tag: age

tag: rin


title: V082-CGND-HRA-02436-A

description: Library name: V082-CGND-HRA-02436-A


title: total RNA-seq from GM21584 (ENCLB676RXY)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR575WIT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR575WIT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB676RXY
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

source_name: Homo sapiens GM21584 cell line

extract_protocol: not provided

tag: line

value: cell line

tag: biosample encode accession

tag: encode accession

tag: note

value: GM21584 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

tag: dev stage

value: adult

tag: lab

value: Stephen Montgomery, Stanford

tag: source

value: Coriell

tag: link

value: ENCBS113AXS at ENCODE; https://www.encodeproject.org/ENCBS113AXS/


title: V080-CGND-HRA-02965-B

description: Library name: V080-CGND-HRA-02965-B

value: F


title: total RNA-seq from GM21387 (ENCLB150BKY)

description:
https://www.encodeproject.org/experiments/ENCSR573PQE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573PQE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB150BKY
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21387 cell line

value: GM21387 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS367XNG at ENCODE; https://www.encodeproject.org/ENCBS367XNG/


title: V080-CGND-HRA-02965-A

description: Library name: V080-CGND-HRA-02965-A


title: total RNA-seq from HG03548 (ENCLB545MWB)

description:
https://www.encodeproject.org/experiments/ENCSR572HTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR572HTN
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB545MWB
nucleic acid starting quantity: 25
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03548 cell line

value: HG03548 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: female

value: ENCBS053CLE at ENCODE; https://www.encodeproject.org/ENCBS053CLE/


title: V079-CGND-HRA-02994-B

description: Library name: V079-CGND-HRA-02994-B

value: Non-neurological control


title: total RNA-seq from GM21382 (ENCLB771KLO)

description:
https://www.encodeproject.org/experiments/ENCSR568WYT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR568WYT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB771KLO
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21382 cell line

value: GM21382 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS393QDZ at ENCODE; https://www.encodeproject.org/ENCBS393QDZ/


title: V079-CGND-HRA-02994-A

description: Library name: V079-CGND-HRA-02994-A


title: total RNA-seq from GM21686 (ENCLB720KWQ)

description:
https://www.encodeproject.org/experiments/ENCSR567XFT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR567XFT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB720KWQ
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21686 cell line

value: GM21686 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS103YCN at ENCODE; https://www.encodeproject.org/ENCBS103YCN/


title: V079-CGND-HRA-02990-D

description: Library name: V079-CGND-HRA-02990-D

value: Non-neurological control, MS


title: total RNA-seq from HG03295 (ENCLB259LSW)

description:
https://www.encodeproject.org/experiments/ENCSR555MCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR555MCF
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB259LSW
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03295 cell line

value: cell line

value: HG03295 LCLs; Donor from the Esan in Nigeria (ESN)

value: male

value: ENCBS828KBA at ENCODE; https://www.encodeproject.org/ENCBS828KBA/


title: V079-CGND-HRA-02990-C

description: Library name: V079-CGND-HRA-02990-C


title: V078-CGND-HRA-02994-B

description: Library name: V078-CGND-HRA-02994-B

value: M


title: total RNA-seq from HG03279 (ENCLB595KTC)

description:
https://www.encodeproject.org/experiments/ENCSR552OBZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR552OBZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB595KTC
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03279 cell line

value: HG03279 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS591IXR at ENCODE; https://www.encodeproject.org/ENCBS591IXR/


title: V078-CGND-HRA-02994-A

description: Library name: V078-CGND-HRA-02994-A


title: total RNA-seq from HG03045 (ENCLB621SOG)

description:
https://www.encodeproject.org/experiments/ENCSR549XOL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR549XOL
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB621SOG
nucleic acid starting quantity: 22
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03045 cell line

tag: description

value: HG03045 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: unknown

value: ENCBS787ZBX at ENCODE; https://www.encodeproject.org/ENCBS787ZBX/

value: Derived from ENCODE donor ENCDO995KMB; https://www.encodeproject.org/ENCDO995KMB/


title: V078-CGND-HRA-02990-D

description: Library name: V078-CGND-HRA-02990-D

value: F


title: total RNA-seq from HG02878 (ENCLB685MVG)

description:
https://www.encodeproject.org/experiments/ENCSR548FDO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR548FDO
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB685MVG
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02878 cell line

value: HG02878 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS983XYN at ENCODE; https://www.encodeproject.org/ENCBS983XYN/


title: total RNA-seq from HG03074 (ENCLB744GXF)

description:
https://www.encodeproject.org/experiments/ENCSR547MCI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR547MCI
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB744GXF
nucleic acid starting quantity: 3
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03074 cell line

value: cell line

value: HG03074 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS778KUZ at ENCODE; https://www.encodeproject.org/ENCBS778KUZ/


title: V077-CGND-HRA-02980-A

description: Library name: V077-CGND-HRA-02980-A

value: ALS


title: total RNA-seq from HG03559 (ENCLB897LLE)

description:
https://www.encodeproject.org/experiments/ENCSR545PEL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR545PEL
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB897LLE
nucleic acid starting quantity: 16
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03559 cell line

value: HG03559 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: male

value: ENCBS026YQJ at ENCODE; https://www.encodeproject.org/ENCBS026YQJ/


title: total RNA-seq from GM18517 (ENCLB293VVO)

description:
https://www.encodeproject.org/experiments/ENCSR544JRP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR544JRP
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB293VVO
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18517 cell line

value: GM18517 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: adult

value: Stephen Montgomery, Stanford

value: ENCBS363LVE at ENCODE; https://www.encodeproject.org/ENCBS363LVE/

value: Derived from ENCODE donor ENCDO394UDJ; https://www.encodeproject.org/ENCDO394UDJ/


title: V076-CGND-HRA-02980-A

description: Library name: V076-CGND-HRA-02980-A


title: total RNA-seq from GM21307 (ENCLB730IEB)

description:
https://www.encodeproject.org/experiments/ENCSR543HAT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR543HAT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB730IEB
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21307 cell line

value: GM21307 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Coriell

value: ENCBS181RCM at ENCODE; https://www.encodeproject.org/ENCBS181RCM/


title: V075-CGND-HRA-02976-D

description: Library name: V075-CGND-HRA-02976-D

value: F


title: total RNA-seq from HG03394 (ENCLB811LBK)

description:
https://www.encodeproject.org/experiments/ENCSR542GVY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR542GVY
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB811LBK
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03394 cell line

value: cell line

value: HG03394 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS172VZD at ENCODE; https://www.encodeproject.org/ENCBS172VZD/


title: V075-CGND-HRA-02956-B

description: Library name: V075-CGND-HRA-02956-B

value: ALS

value: M


title: total RNA-seq from HG02646 (ENCLB174IVQ)

description:
https://www.encodeproject.org/experiments/ENCSR541YPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR541YPB
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB174IVQ
nucleic acid starting quantity: 26
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02646 cell line

value: HG02646 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS261FMR at ENCODE; https://www.encodeproject.org/ENCBS261FMR/


title: V074-CGND-HRA-02976-D

description: Library name: V074-CGND-HRA-02976-D


title: total RNA-seq from HG02716 (ENCLB195USH)

description:
https://www.encodeproject.org/experiments/ENCSR577MFW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR577MFW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB195USH
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02716 cell line

value: HG02716 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS636BCR at ENCODE; https://www.encodeproject.org/ENCBS636BCR/


title: total RNA-seq from HG02628 (ENCLB494EQB)

description:
https://www.encodeproject.org/experiments/ENCSR539RRG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR539RRG
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB494EQB
nucleic acid starting quantity: 55
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02628 cell line

value: HG02628 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: adult

value: ENCBS362UKS at ENCODE; https://www.encodeproject.org/ENCBS362UKS/


title: V074-CGND-HRA-02976-C

description: Library name: V074-CGND-HRA-02976-C


title: V081-CGND-HRA-02965-A

description: Library name: V081-CGND-HRA-02965-A


title: total RNA-seq from suppressor macrophage (ENCLB528NKQ)

description:
https://www.encodeproject.org/experiments/ENCSR577HZI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR577HZI
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB528NKQ

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS258RQL at ENCODE; https://www.encodeproject.org/ENCBS258RQL/


title: V081-CGND-HRA-02965-B

description: Library name: V081-CGND-HRA-02965-B

value: F


title: total RNA-seq from HG03136 (ENCLB395SGO)

description:
https://www.encodeproject.org/experiments/ENCSR573ZDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573ZDH
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB395SGO
nucleic acid starting quantity: 63
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03136 cell line

value: cell line

value: HG03136 LCLs; Donor from the Esan in Nigeria (ESN)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS653USQ at ENCODE; https://www.encodeproject.org/ENCBS653USQ/


title: total RNA-seq from GM21435 (ENCLB086HCI)

description:
https://www.encodeproject.org/experiments/ENCSR538PUW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR538PUW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB086HCI
nucleic acid starting quantity: 26
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21435 cell line

value: GM21435 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS578LKM at ENCODE; https://www.encodeproject.org/ENCBS578LKM/


title: V074-CGND-HRA-02956-B

description: Library name: V074-CGND-HRA-02956-B

value: ALS

value: M


title: total RNA-seq from HG03437 (ENCLB443YCJ)

description:
https://www.encodeproject.org/experiments/ENCSR538GET/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR538GET
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB443YCJ
nucleic acid starting quantity: 20
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03437 cell line

value: HG03437 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: female

value: adult

value: ENCBS566LDK at ENCODE; https://www.encodeproject.org/ENCBS566LDK/


title: V074-CGND-HRA-02956-A

description: Library name: V074-CGND-HRA-02956-A


title: total RNA-seq from HG03126 (ENCLB704GTJ)

description:
https://www.encodeproject.org/experiments/ENCSR536ION/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR536ION
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB704GTJ
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03126 cell line

value: HG03126 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS502JEZ at ENCODE; https://www.encodeproject.org/ENCBS502JEZ/


title: V073-CGND-HRA-02982-D

description: Library name: V073-CGND-HRA-02982-D


title: total RNA-seq from GM19395 (ENCLB671TNF)

description:
https://www.encodeproject.org/experiments/ENCSR531ROT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR531ROT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB671TNF
nucleic acid starting quantity: 45
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19395 cell line

value: GM19395 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: unknown

value: ENCBS298QDA at ENCODE; https://www.encodeproject.org/ENCBS298QDA/

value: Derived from ENCODE donor ENCDO246IOK; https://www.encodeproject.org/ENCDO246IOK/


title: total RNA-seq from GM21362 (ENCLB467SQD)

description:
https://www.encodeproject.org/experiments/ENCSR530TPK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR530TPK
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB467SQD
nucleic acid starting quantity: 2
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21362 cell line

value: cell line

value: GM21362 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Stephen Montgomery, Stanford

value: ENCBS823QXM at ENCODE; https://www.encodeproject.org/ENCBS823QXM/


title: V073-CGND-HRA-02982-C

description: Library name: V073-CGND-HRA-02982-C

value: F


title: V073-CGND-HRA-02981-B

description: Library name: V073-CGND-HRA-02981-B

value: ALS


title: total RNA-seq from GM19404 (ENCLB050MJO)

description:
https://www.encodeproject.org/experiments/ENCSR528NAL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR528NAL
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB050MJO
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19404 cell line

value: GM19404 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: Coriell

value: ENCBS754ZZZ at ENCODE; https://www.encodeproject.org/ENCBS754ZZZ/


title: V073-CGND-HRA-02981-A

description: Library name: V073-CGND-HRA-02981-A

value: M


title: total RNA-seq from GM18878 (ENCLB287AQO)

description:
https://www.encodeproject.org/experiments/ENCSR527ODW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR527ODW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB287AQO
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18878 cell line

value: GM18878 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: adult

value: ENCBS415OSW at ENCODE; https://www.encodeproject.org/ENCBS415OSW/


title: total RNA-seq from GM19036 (ENCLB606VIG)

description:
https://www.encodeproject.org/experiments/ENCSR553DGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR553DGY
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB606VIG
nucleic acid starting quantity: 17
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19036 cell line

value: GM19036 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS431XHF at ENCODE; https://www.encodeproject.org/ENCBS431XHF/


title: V072-CGND-HRA-02982-D

description: Library name: V072-CGND-HRA-02982-D


title: total RNA-seq from technical sample (ENCLB387RDK)

description:
https://www.encodeproject.org/experiments/ENCSR154RVC/
***************
biological replicate number: 3
technical replicate number: 1
description: LRGASP_mix
experiment encode accession: ENCSR154RVC
assay title: total RNA-seq
encode release date: 2021-05-06
lab: Barbara Wold, Caltech
library encode accession: ENCLB387RDK
spikeins used: Lexogen set 4 reference spike-ins used for long-read RNA-seq, including the longSIRVs and SIRVs. Note that this does NOT contain the ERCCs that are a part of this mix., ERCC reference spike-ins used for LRGASP. Note that this does NOT contain the SIRVs that are a part of this mix (found in ENCSR759PLA).
nucleic acid starting quantity: 400
nucleic acid starting quantity units: ng

organism: synthetic construct

source_name: control

value: technical sample

tag: biosample term name

value: synthetic construct

value: 60 days

value: Ryan Tewhey, JAX

value: not applicable


title: total RNA-seq from HG02582 (ENCLB796VSX)

description:
https://www.encodeproject.org/experiments/ENCSR524JBZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524JBZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB796VSX
nucleic acid starting quantity: 47
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02582 cell line

value: cell line

value: HG02582 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: Stephen Montgomery, Stanford

value: ENCBS946PUW at ENCODE; https://www.encodeproject.org/ENCBS946PUW/


title: V072-CGND-HRA-02981-B

description: Library name: V072-CGND-HRA-02981-B

tag: tissue

value: ALS

value: M


title: total RNA-seq from GM19451 (ENCLB580JUM)

description:
https://www.encodeproject.org/experiments/ENCSR520VJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR520VJV
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB580JUM
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19451 cell line

value: GM19451 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: Coriell

value: ENCBS395RQS at ENCODE; https://www.encodeproject.org/ENCBS395RQS/


title: V071-CGND-HRA-02962-D

description: Library name: V071-CGND-HRA-02962-D

tag: subject id

value: F


title: total RNA-seq from HG02799 (ENCLB894GYC)

description:
https://www.encodeproject.org/experiments/ENCSR520TJP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR520TJP
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB894GYC
nucleic acid starting quantity: 23
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02799 cell line

value: HG02799 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: adult

value: ENCBS990IWV at ENCODE; https://www.encodeproject.org/ENCBS990IWV/


title: V072-CGND-HRA-02981-A

description: Library name: V072-CGND-HRA-02981-A

tag: diagnosis


title: total RNA-seq from GM21391 (ENCLB667YUO)

description:
https://www.encodeproject.org/experiments/ENCSR518RPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518RPJ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB667YUO
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21391 cell line

value: GM21391 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS807VBI at ENCODE; https://www.encodeproject.org/ENCBS807VBI/


title: V071-CGND-HRA-02962-C

description: Library name: V071-CGND-HRA-02962-C

tag: pmi


title: V071-CGND-HRA-02961-B

description: Library name: V071-CGND-HRA-02961-B

tag: Sex


title: V078-CGND-HRA-02990-C

description: Library name: V078-CGND-HRA-02990-C

value: Non-neurological control, MS

tag: age


title: total RNA-seq from HG02811 (ENCLB337IVG)

description:
https://www.encodeproject.org/experiments/ENCSR516NOS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516NOS
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB337IVG
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02811 cell line

value: cell line

value: HG02811 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS075OMZ at ENCODE; https://www.encodeproject.org/ENCBS075OMZ/


title: total RNA-seq from HG03267 (ENCLB080YZU)

description:
https://www.encodeproject.org/experiments/ENCSR516MIQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516MIQ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB080YZU
nucleic acid starting quantity: 15
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03267 cell line

value: HG03267 LCLs; Donor from the Esan in Nigeria (ESN)

value: Stephen Montgomery, Stanford

value: ENCBS794IXG at ENCODE; https://www.encodeproject.org/ENCBS794IXG/


title: V070-CGND-HRA-02961-B

description: Library name: V070-CGND-HRA-02961-B

value: ALS

value: M

tag: rin


title: V070-CGND-HRA-02962-D

description: Library name: V070-CGND-HRA-02962-D


title: total RNA-seq from GM21616 (ENCLB576JXF)

description:
https://www.encodeproject.org/experiments/ENCSR516JGC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516JGC
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB576JXF
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21616 cell line

tag: line

value: GM21616 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: Coriell

value: ENCBS151HYN at ENCODE; https://www.encodeproject.org/ENCBS151HYN/


title: total RNA-seq from HG02772 (ENCLB145JLP)

description:
https://www.encodeproject.org/experiments/ENCSR515QLF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515QLF
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB145JLP
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02772 cell line

tag: biosample encode accession

value: HG02772 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: adult

value: ENCBS849QXW at ENCODE; https://www.encodeproject.org/ENCBS849QXW/


title: V076-CGND-HRA-02980-B

description: Library name: V076-CGND-HRA-02980-B

value: F


title: V070-CGND-HRA-02961-A

description: Library name: V070-CGND-HRA-02961-A


title: V069-CGND-HRA-02986-D

description: Library name: V069-CGND-HRA-02986-D


title: total RNA-seq from GM19028 (ENCLB301TAI)

description:
https://www.encodeproject.org/experiments/ENCSR514RNJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR514RNJ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB301TAI
nucleic acid starting quantity: 29
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19028 cell line

value: cell line

tag: encode accession

value: GM19028 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS417IZV at ENCODE; https://www.encodeproject.org/ENCBS417IZV/


title: total RNA-seq from HG02757 (ENCLB319CML)

description:
https://www.encodeproject.org/experiments/ENCSR512SSW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR512SSW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB319CML
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02757 cell line

tag: note

value: HG02757 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS040TEC at ENCODE; https://www.encodeproject.org/ENCBS040TEC/


title: V069-CGND-HRA-02986-C

description: Library name: V069-CGND-HRA-02986-C


title: total RNA-seq from HG03547 (ENCLB187WKE)

description:
https://www.encodeproject.org/experiments/ENCSR511HXI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR511HXI
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB187WKE
nucleic acid starting quantity: 2
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03547 cell line

value: HG03547 LCLs; Donor from the Mende in Sierra Leone (MSL)

tag: dev stage

value: Stephen Montgomery, Stanford

value: ENCBS417IBU at ENCODE; https://www.encodeproject.org/ENCBS417IBU/


title: V068-CGND-HRA-02986-D

description: Library name: V068-CGND-HRA-02986-D

value: ALS

value: M


title: total RNA-seq from HG02895 (ENCLB343LSZ)

description:
https://www.encodeproject.org/experiments/ENCSR506UQN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR506UQN
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB343LSZ
nucleic acid starting quantity: 29
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02895 cell line

value: HG02895 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

tag: lab

value: Coriell

value: ENCBS705QVM at ENCODE; https://www.encodeproject.org/ENCBS705QVM/


title: V067-CGND-HRA-03000-B

description: Library name: V067-CGND-HRA-03000-B

value: Non-neurological control


title: V068-CGND-HRA-02986-C

description: Library name: V068-CGND-HRA-02986-C


title: V067-CGND-HRA-03000-A

description: Library name: V067-CGND-HRA-03000-A


title: total RNA-seq from HG03370 (ENCLB763GAK)

description:
https://www.encodeproject.org/experiments/ENCSR506SHB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR506SHB
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB763GAK
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03370 cell line

value: HG03370 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

tag: source

value: ENCBS267ILU at ENCODE; https://www.encodeproject.org/ENCBS267ILU/


title: total RNA-seq from HG02574 (ENCLB952DGY)

description:
https://www.encodeproject.org/experiments/ENCSR506DRH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR506DRH
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB952DGY
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02574 cell line

value: cell line

value: HG02574 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

tag: link

value: ENCBS787LYW at ENCODE; https://www.encodeproject.org/ENCBS787LYW/


title: total RNA-seq from HG03518 (ENCLB405RRZ)

description:
https://www.encodeproject.org/experiments/ENCSR505PII/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR505PII
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB405RRZ
nucleic acid starting quantity: 23
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03518 cell line

value: HG03518 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS459NOY at ENCODE; https://www.encodeproject.org/ENCBS459NOY/


title: V067-CGND-HRA-02963-D

description: Library name: V067-CGND-HRA-02963-D

value: F


title: V066-CGND-HRA-03000-B

description: Library name: V066-CGND-HRA-03000-B


title: total RNA-seq from GM19380 (ENCLB855DSS)

description:
https://www.encodeproject.org/experiments/ENCSR503MHN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR503MHN
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB855DSS
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19380 cell line

value: GM19380 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: Stephen Montgomery, Stanford

value: ENCBS681WTG at ENCODE; https://www.encodeproject.org/ENCBS681WTG/


title: total RNA-seq from GM21450 (ENCLB275UUL)

description:
https://www.encodeproject.org/experiments/ENCSR496IWD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR496IWD
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB275UUL
nucleic acid starting quantity: 19
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21450 cell line

value: GM21450 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: ENCBS714EYJ at ENCODE; https://www.encodeproject.org/ENCBS714EYJ/


title: V066-CGND-HRA-03000-A

description: Library name: V066-CGND-HRA-03000-A

value: Non-neurological control

value: M


title: V066-CGND-HRA-02963-D

description: Library name: V066-CGND-HRA-02963-D

value: ALS


title: total RNA-seq from HG03193 (ENCLB205ZNB)

description:
https://www.encodeproject.org/experiments/ENCSR495VON/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR495VON
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB205ZNB
nucleic acid starting quantity: 2
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03193 cell line

value: HG03193 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

value: Coriell

value: ENCBS305SOJ at ENCODE; https://www.encodeproject.org/ENCBS305SOJ/


title: total RNA-seq from HG02941 (ENCLB977BVW)

description:
https://www.encodeproject.org/experiments/ENCSR495UGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR495UGE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB977BVW
nucleic acid starting quantity: 29
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02941 cell line

value: cell line

value: HG02941 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS210WQO at ENCODE; https://www.encodeproject.org/ENCBS210WQO/


title: V066-CGND-HRA-02963-C

description: Library name: V066-CGND-HRA-02963-C

value: F


title: total RNA-seq from HG03499 (ENCLB771DVP)

description:
https://www.encodeproject.org/experiments/ENCSR492IOQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR492IOQ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB771DVP
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03499 cell line

value: HG03499 LCLs; Donor from the Esan in Nigeria (ESN)

value: female

value: ENCBS865VMP at ENCODE; https://www.encodeproject.org/ENCBS865VMP/


title: V065-CGND-HRA-02997-B

description: Library name: V065-CGND-HRA-02997-B


title: total RNA-seq from GM18858 (ENCLB006IWA)

description:
https://www.encodeproject.org/experiments/ENCSR493LPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR493LPB
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB006IWA
nucleic acid starting quantity: 25
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18858 cell line

tag: description

value: GM18858 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: unknown

value: Stephen Montgomery, Stanford

value: ENCBS364ERL at ENCODE; https://www.encodeproject.org/ENCBS364ERL/

value: Derived from ENCODE donor ENCDO695OTG; https://www.encodeproject.org/ENCDO695OTG/


title: V065-CGND-HRA-02997-A

description: Library name: V065-CGND-HRA-02997-A

value: Non-neurological control

value: M


title: total RNA-seq from HG02979 (ENCLB505YHT)

description:
https://www.encodeproject.org/experiments/ENCSR489KYR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR489KYR
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB505YHT
nucleic acid starting quantity: 46
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02979 cell line

value: HG02979 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

value: ENCBS701JTE at ENCODE; https://www.encodeproject.org/ENCBS701JTE/


title: V065-CGND-HRA-02957-D

description: Library name: V065-CGND-HRA-02957-D

value: ALS


title: total RNA-seq from GM21632 (ENCLB864KLJ)

description:
https://www.encodeproject.org/experiments/ENCSR489ANE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR489ANE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB864KLJ
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21632 cell line

value: cell line

value: GM21632 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Coriell

value: ENCBS160FVB at ENCODE; https://www.encodeproject.org/ENCBS160FVB/


title: V065-CGND-HRA-02957-C

description: Library name: V065-CGND-HRA-02957-C

value: F


title: V064-CGND-HRA-02997-B

description: Library name: V064-CGND-HRA-02997-B


title: total RNA-seq from HG02675 (ENCLB282PJA)

description:
https://www.encodeproject.org/experiments/ENCSR488KMC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR488KMC
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB282PJA
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02675 cell line

value: HG02675 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS069LIN at ENCODE; https://www.encodeproject.org/ENCBS069LIN/


title: total RNA-seq from GM21679 (ENCLB623TYN)

description:
https://www.encodeproject.org/experiments/ENCSR488HDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR488HDA
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB623TYN
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21679 cell line

value: GM21679 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: Stephen Montgomery, Stanford

value: ENCBS848CNO at ENCODE; https://www.encodeproject.org/ENCBS848CNO/


title: V064-CGND-HRA-02997-A

description: Library name: V064-CGND-HRA-02997-A

value: Non-neurological control

value: M


title: total RNA-seq from HG03061 (ENCLB709RXZ)

description:
https://www.encodeproject.org/experiments/ENCSR486VJZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR486VJZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB709RXZ
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03061 cell line

value: HG03061 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: adult

value: ENCBS062RSU at ENCODE; https://www.encodeproject.org/ENCBS062RSU/


title: V064-CGND-HRA-02957-D

description: Library name: V064-CGND-HRA-02957-D

value: ALS


title: total RNA-seq from GM18909 (ENCLB168MEL)

description:
https://www.encodeproject.org/experiments/ENCSR483DZA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR483DZA
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB168MEL
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18909 cell line

value: cell line

value: GM18909 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: unknown

value: ENCBS734LCE at ENCODE; https://www.encodeproject.org/ENCBS734LCE/

value: Derived from ENCODE donor ENCDO059XUW; https://www.encodeproject.org/ENCDO059XUW/


title: V057-CGND-HRA-02436-B

description: Library name: V057-CGND-HRA-02436-B


title: total RNA-seq from GM19443 (ENCLB454BPT)

description:
https://www.encodeproject.org/experiments/ENCSR477REX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR477REX
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB454BPT
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19443 cell line

value: GM19443 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: male

value: Coriell

value: ENCBS333LII at ENCODE; https://www.encodeproject.org/ENCBS333LII/


title: V064-CGND-HRA-02957-C

description: Library name: V064-CGND-HRA-02957-C

value: F


title: V057-CGND-HRA-02436-A

description: Library name: V057-CGND-HRA-02436-A


title: total RNA-seq from GM19350 (ENCLB741UML)

description:
https://www.encodeproject.org/experiments/ENCSR476KJL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR476KJL
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB741UML
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19350 cell line

value: GM19350 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: Stephen Montgomery, Stanford

value: ENCBS602CUZ at ENCODE; https://www.encodeproject.org/ENCBS602CUZ/


title: total RNA-seq from GM19320 (ENCLB579ZIN)

description:
https://www.encodeproject.org/experiments/ENCSR482YTN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR482YTN
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB579ZIN
nucleic acid starting quantity: 25
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19320 cell line

value: GM19320 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: ENCBS149DEY at ENCODE; https://www.encodeproject.org/ENCBS149DEY/


title: V051-CGND-HRA-00224-D

description: Library name: V051-CGND-HRA-00224-D

value: Non-neurological control


title: V051-CGND-HRA-00224-C

description: Library name: V051-CGND-HRA-00224-C


title: total RNA-seq from HG02586 (ENCLB509WVL)

description:
https://www.encodeproject.org/experiments/ENCSR474GTG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR474GTG
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB509WVL
nucleic acid starting quantity: 27
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02586 cell line

value: cell line

value: HG02586 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: adult

value: ENCBS368IPK at ENCODE; https://www.encodeproject.org/ENCBS368IPK/


title: total RNA-seq from suppressor macrophage (ENCLB199WAL)

description:
https://www.encodeproject.org/experiments/ENCSR473SJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473SJD
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB199WAL
instrument models: Illumina HiSeq 2500,Illumina NextSeq 500

source_name: Homo sapiens male adult (21 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS252MCU at ENCODE; https://www.encodeproject.org/ENCBS252MCU/


title: V050-CGND-HRA-00224-D

description: Library name: V050-CGND-HRA-00224-D

value: F


title: total RNA-seq from HG03100 (ENCLB932ZRA)

description:
https://www.encodeproject.org/experiments/ENCSR473POP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473POP
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB932ZRA
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03100 cell line

value: HG03100 LCLs; Donor from the Esan in Nigeria (ESN)

value: male

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS673GKN at ENCODE; https://www.encodeproject.org/ENCBS673GKN/


title: V050-CGND-HRA-00224-C

description: Library name: V050-CGND-HRA-00224-C

value: Non-neurological control


title: total RNA-seq from GM21448 (ENCLB277NYX)

description:
https://www.encodeproject.org/experiments/ENCSR472BFR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR472BFR
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB277NYX
nucleic acid starting quantity: 43
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21448 cell line

value: cell line

value: GM21448 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS086COS at ENCODE; https://www.encodeproject.org/ENCBS086COS/


title: V049-CGND-HRA-00222-C

description: Library name: V049-CGND-HRA-00222-C

value: ALS

value: M


title: V049-CGND-HRA-00222-D

description: Library name: V049-CGND-HRA-00222-D


title: total RNA-seq from GM21717 (ENCLB321PLY)

description:
https://www.encodeproject.org/experiments/ENCSR473GBY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473GBY
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB321PLY
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21717 cell line

value: GM21717 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: adult

value: unknown

value: ENCBS091CWU at ENCODE; https://www.encodeproject.org/ENCBS091CWU/

value: Derived from ENCODE donor ENCDO404YAI; https://www.encodeproject.org/ENCDO404YAI/


title: total RNA-seq from HG03445 (ENCLB047IIV)

description:
https://www.encodeproject.org/experiments/ENCSR469UCM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR469UCM
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB047IIV
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03445 cell line

value: HG03445 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS159CUL at ENCODE; https://www.encodeproject.org/ENCBS159CUL/


title: V048-CGND-HRA-00222-D

description: Library name: V048-CGND-HRA-00222-D


title: total RNA-seq from suppressor macrophage (ENCLB106IMS)

description:
https://www.encodeproject.org/experiments/ENCSR470GWS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR470GWS
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB106IMS

value: suppressor macrophage

value: primary cell

value: male

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS985EOL at ENCODE; https://www.encodeproject.org/ENCBS985EOL/


title: V048-CGND-HRA-00222-C

description: Library name: V048-CGND-HRA-00222-C

value: ALS


title: total RNA-seq from HG03060 (ENCLB512SZF)

description:
https://www.encodeproject.org/experiments/ENCSR468INT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR468INT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB512SZF
nucleic acid starting quantity: 23
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03060 cell line

value: cell line

value: HG03060 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS344MAF at ENCODE; https://www.encodeproject.org/ENCBS344MAF/

value: Derived from ENCODE donor ENCDO316WAT; https://www.encodeproject.org/ENCDO316WAT/


title: total RNA-seq from GM18502 (ENCLB055BVD)

description:
https://www.encodeproject.org/experiments/ENCSR463LCS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR463LCS
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB055BVD
nucleic acid starting quantity: 27
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18502 cell line

value: GM18502 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: adult

value: unknown

value: ENCBS851RJQ at ENCODE; https://www.encodeproject.org/ENCBS851RJQ/

value: Derived from ENCODE donor ENCDO326KDH; https://www.encodeproject.org/ENCDO326KDH/


title: V047-CGND-HRA-00611-B

description: Library name: V047-CGND-HRA-00611-B

value: ALS Spectrum MND, Other Neurological Disorders

value: F


title: V047-CGND-HRA-00611-A

description: Library name: V047-CGND-HRA-00611-A


title: total RNA-seq from suppressor macrophage (ENCLB894EHE)

description:
https://www.encodeproject.org/experiments/ENCSR460NOV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR460NOV
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB894EHE

source_name: Homo sapiens male adult (40 years) suppressor macrophage primary cell

value: suppressor macrophage

value: primary cell

value: male

value: 40 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS538CCM at ENCODE; https://www.encodeproject.org/ENCBS538CCM/


title: total RNA-seq from inflammatory macrophage (ENCLB538OBA)

description:
https://www.encodeproject.org/experiments/ENCSR459UIT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR459UIT
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB538OBA

source_name: Homo sapiens male adult (40 years) inflammatory macrophage primary cell

value: inflammatory macrophage

value: ENCBS575CAA at ENCODE; https://www.encodeproject.org/ENCBS575CAA/


title: V046-CGND-HRA-00611-B

description: Library name: V046-CGND-HRA-00611-B


title: V047-CGND-HRA-00223-C

description: Library name: V047-CGND-HRA-00223-C

value: ALS


title: V047-CGND-HRA-00223-D

description: Library name: V047-CGND-HRA-00223-D


title: total RNA-seq from HG03571 (ENCLB178OQR)

description:
https://www.encodeproject.org/experiments/ENCSR457XXO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR457XXO
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB178OQR
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03571 cell line

value: cell line

value: HG03571 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS118JKJ at ENCODE; https://www.encodeproject.org/ENCBS118JKJ/

value: Derived from ENCODE donor ENCDO250WAH; https://www.encodeproject.org/ENCDO250WAH/


title: V046-CGND-HRA-00611-A

description: Library name: V046-CGND-HRA-00611-A

value: ALS Spectrum MND, Other Neurological Disorders

value: F


title: total RNA-seq from GM21414 (ENCLB326RVR)

description:
https://www.encodeproject.org/experiments/ENCSR456PEX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR456PEX
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB326RVR
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21414 cell line

value: GM21414 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: ENCBS772EWT at ENCODE; https://www.encodeproject.org/ENCBS772EWT/


title: V046-CGND-HRA-00223-D

description: Library name: V046-CGND-HRA-00223-D


title: total RNA-seq from HG02621 (ENCLB923FDH)

description:
https://www.encodeproject.org/experiments/ENCSR456LPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR456LPH
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB923FDH
nucleic acid starting quantity: 39
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02621 cell line

value: HG02621 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: female

value: ENCBS438VBT at ENCODE; https://www.encodeproject.org/ENCBS438VBT/


title: total RNA-seq from GM18511 (ENCLB731VSH)

description:
https://www.encodeproject.org/experiments/ENCSR455FKV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR455FKV
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB731VSH
nucleic acid starting quantity: 15
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18511 cell line

value: GM18511 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: unknown

value: ENCBS166NJK at ENCODE; https://www.encodeproject.org/ENCBS166NJK/

value: Derived from ENCODE donor ENCDO092TGW; https://www.encodeproject.org/ENCDO092TGW/


title: total RNA-seq from GM21359 (ENCLB722SPC)

description:
https://www.encodeproject.org/experiments/ENCSR454NRE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR454NRE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB722SPC
nucleic acid starting quantity: 30
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21359 cell line

value: cell line

value: GM21359 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: ENCBS391FOL at ENCODE; https://www.encodeproject.org/ENCBS391FOL/


title: V046-CGND-HRA-00223-C

description: Library name: V046-CGND-HRA-00223-C

value: ALS


title: V045-CGND-HRA-00603-D

description: Library name: V045-CGND-HRA-00603-D


title: total RNA-seq from GM21454 (ENCLB868VTW)

description:
https://www.encodeproject.org/experiments/ENCSR448VFZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR448VFZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB868VTW
nucleic acid starting quantity: 22
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21454 cell line

value: GM21454 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS182ABF at ENCODE; https://www.encodeproject.org/ENCBS182ABF/


title: total RNA-seq from GM18508 (ENCLB384CGH)

description:
https://www.encodeproject.org/experiments/ENCSR447TKM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR447TKM
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB384CGH
nucleic acid starting quantity: 18
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18508 cell line

value: GM18508 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: adult

value: ENCBS430CQD at ENCODE; https://www.encodeproject.org/ENCBS430CQD/

value: Derived from ENCODE donor ENCDO792AYC; https://www.encodeproject.org/ENCDO792AYC/


title: V045-CGND-HRA-00603-C

description: Library name: V045-CGND-HRA-00603-C

value: F


title: V044-CGND-HRA-00603-C

description: Library name: V044-CGND-HRA-00603-C


title: total RNA-seq from GM21371 (ENCLB854YCE)

description:
https://www.encodeproject.org/experiments/ENCSR446ODD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR446ODD
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB854YCE
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21371 cell line

value: GM21371 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: ENCBS590WPA at ENCODE; https://www.encodeproject.org/ENCBS590WPA/


title: total RNA-seq from GM19467 (ENCLB446RMU)

description:
https://www.encodeproject.org/experiments/ENCSR443MSV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR443MSV
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB446RMU
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19467 cell line

value: cell line

value: GM19467 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: unknown

value: ENCBS329UGW at ENCODE; https://www.encodeproject.org/ENCBS329UGW/

value: Derived from ENCODE donor ENCDO514AGP; https://www.encodeproject.org/ENCDO514AGP/


title: total RNA-seq from HG02884 (ENCLB196ZBL)

description:
https://www.encodeproject.org/experiments/ENCSR440UOW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR440UOW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB196ZBL
nucleic acid starting quantity: 44
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02884 cell line

value: HG02884 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS879NII at ENCODE; https://www.encodeproject.org/ENCBS879NII/

value: Derived from ENCODE donor ENCDO038ZPT; https://www.encodeproject.org/ENCDO038ZPT/


title: V044-CGND-HRA-00603-D

description: Library name: V044-CGND-HRA-00603-D

value: ALS


title: V041-CGND-HRA-02524-C

description: Library name: V041-CGND-HRA-02524-C


title: V041-CGND-HRA-02524-D

description: Library name: V041-CGND-HRA-02524-D


title: V041-CGND-HRA-02522-B

description: Library name: V041-CGND-HRA-02522-B


title: total RNA-seq from HG03196 (ENCLB189BNH)

description:
https://www.encodeproject.org/experiments/ENCSR439NNZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR439NNZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB189BNH
nucleic acid starting quantity: 23
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03196 cell line

value: HG03196 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS213IBL at ENCODE; https://www.encodeproject.org/ENCBS213IBL/

value: Derived from ENCODE donor ENCDO224CAO; https://www.encodeproject.org/ENCDO224CAO/


title: total RNA-seq from GM21634 (ENCLB081FLB)

description:
https://www.encodeproject.org/experiments/ENCSR439UXE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR439UXE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB081FLB
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21634 cell line

value: GM21634 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS951JCP at ENCODE; https://www.encodeproject.org/ENCBS951JCP/


title: total RNA-seq from GM21436 (ENCLB275BJD)

description:
https://www.encodeproject.org/experiments/ENCSR438LON/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR438LON
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB275BJD
nucleic acid starting quantity: 2
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21436 cell line

value: cell line

value: GM21436 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: ENCBS724YGM at ENCODE; https://www.encodeproject.org/ENCBS724YGM/


title: V040-CGND-HRA-02524-D

description: Library name: V040-CGND-HRA-02524-D

value: F


title: V041-CGND-HRA-02522-A

description: Library name: V041-CGND-HRA-02522-A


title: total RNA-seq from GM19471 (ENCLB771TJK)

description:
https://www.encodeproject.org/experiments/ENCSR434DUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR434DUZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB771TJK
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19471 cell line

value: GM19471 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: ENCBS381ZQG at ENCODE; https://www.encodeproject.org/ENCBS381ZQG/


title: V040-CGND-HRA-02524-C

description: Library name: V040-CGND-HRA-02524-C


title: V040-CGND-HRA-02522-B

description: Library name: V040-CGND-HRA-02522-B


title: total RNA-seq from GM19043 (ENCLB697FWQ)

description:
https://www.encodeproject.org/experiments/ENCSR432YJC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR432YJC
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB697FWQ
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19043 cell line

value: GM19043 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: male

value: unknown

value: ENCBS539BEG at ENCODE; https://www.encodeproject.org/ENCBS539BEG/

value: Derived from ENCODE donor ENCDO358TTL; https://www.encodeproject.org/ENCDO358TTL/


title: total RNA-seq from GM18856 (ENCLB686GGY)

description:
https://www.encodeproject.org/experiments/ENCSR429OPS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR429OPS
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB686GGY
nucleic acid starting quantity: 25
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18856 cell line

value: GM18856 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: adult

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS035ZTQ at ENCODE; https://www.encodeproject.org/ENCBS035ZTQ/


title: total RNA-seq from HG02819 (ENCLB513ZPJ)

description:
https://www.encodeproject.org/experiments/ENCSR430SWN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR430SWN
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB513ZPJ
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02819 cell line

value: cell line

value: HG02819 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS562XOY at ENCODE; https://www.encodeproject.org/ENCBS562XOY/


title: V040-CGND-HRA-02522-A

description: Library name: V040-CGND-HRA-02522-A

value: ALS


title: V039-CGND-HRA-02520-D

description: Library name: V039-CGND-HRA-02520-D

value: M


title: total RNA-seq from HG03163 (ENCLB959NQK)

description:
https://www.encodeproject.org/experiments/ENCSR428TVC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR428TVC
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB959NQK
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03163 cell line

value: HG03163 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS382AEN at ENCODE; https://www.encodeproject.org/ENCBS382AEN/


title: V039-CGND-HRA-02520-C

description: Library name: V039-CGND-HRA-02520-C


title: total RNA-seq from HG03401 (ENCLB931TCF)

description:
https://www.encodeproject.org/experiments/ENCSR428DBM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR428DBM
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB931TCF
nucleic acid starting quantity: 35
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03401 cell line

value: HG03401 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: female

value: ENCBS760JEL at ENCODE; https://www.encodeproject.org/ENCBS760JEL/


title: V038-CGND-HRA-02520-D

description: Library name: V038-CGND-HRA-02520-D


title: total RNA-seq from GM21316 (ENCLB668JYW)

description:
https://www.encodeproject.org/experiments/ENCSR424DGE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR424DGE
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB668JYW
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21316 cell line

value: GM21316 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: ENCBS812PXX at ENCODE; https://www.encodeproject.org/ENCBS812PXX/


title: V033-CGND-HRA-02527-C

description: Library name: V033-CGND-HRA-02527-C


title: total RNA-seq from GM21298 (ENCLB242XYD)

description:
https://www.encodeproject.org/experiments/ENCSR427TCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR427TCZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB242XYD
nucleic acid starting quantity: 26
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21298 cell line

value: GM21298 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: ENCBS286FFN at ENCODE; https://www.encodeproject.org/ENCBS286FFN/


title: V038-CGND-HRA-02520-C

description: Library name: V038-CGND-HRA-02520-C


title: total RNA-seq from GM18853 (ENCLB155BML)

description:
https://www.encodeproject.org/experiments/ENCSR422TPB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR422TPB
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB155BML
nucleic acid starting quantity: 38
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18853 cell line

value: GM18853 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS515TIP at ENCODE; https://www.encodeproject.org/ENCBS515TIP/


title: total RNA-seq from HG02953 (ENCLB832OLF)

description:
https://www.encodeproject.org/experiments/ENCSR421OPI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR421OPI
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB832OLF
nucleic acid starting quantity: 35
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02953 cell line

value: cell line

value: HG02953 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS932DWD at ENCODE; https://www.encodeproject.org/ENCBS932DWD/


title: V033-CGND-HRA-02527-D

description: Library name: V033-CGND-HRA-02527-D

value: ALS

value: M


title: V033-CGND-HRA-02527-B

description: Library name: V033-CGND-HRA-02527-B


title: total RNA-seq from GM19316 (ENCLB023MUP)

description:
https://www.encodeproject.org/experiments/ENCSR420UKS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420UKS
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB023MUP
nucleic acid starting quantity: 20
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19316 cell line

value: GM19316 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

value: female

value: ENCBS387YLS at ENCODE; https://www.encodeproject.org/ENCBS387YLS/


title: V032-CGND-HRA-02516-B

description: Library name: V032-CGND-HRA-02516-B


title: total RNA-seq from GM21488 (ENCLB584CYF)

description:
https://www.encodeproject.org/experiments/ENCSR420IZM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420IZM
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB584CYF
nucleic acid starting quantity: 26
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21488 cell line

value: GM21488 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: ENCBS720VYZ at ENCODE; https://www.encodeproject.org/ENCBS720VYZ/


title: V032-CGND-HRA-02516-A

description: Library name: V032-CGND-HRA-02516-A


title: total RNA-seq from GM21611 (ENCLB380FEX)

description:
https://www.encodeproject.org/experiments/ENCSR418YCO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR418YCO
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB380FEX
nucleic acid starting quantity: 41
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21611 cell line

value: GM21611 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: adult

value: ENCBS192EXU at ENCODE; https://www.encodeproject.org/ENCBS192EXU/


title: V031-CGND-HRA-02516-B

description: Library name: V031-CGND-HRA-02516-B


title: total RNA-seq from CD14-positive monocyte (ENCLB145ZIH)

description:
https://www.encodeproject.org/experiments/ENCSR418PAC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR418PAC
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB145ZIH

source_name: Homo sapiens male adult (21 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 21 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS966GOD at ENCODE; https://www.encodeproject.org/ENCBS966GOD/


title: total RNA-seq from HG02589 (ENCLB286OTZ)

description:
https://www.encodeproject.org/experiments/ENCSR418DEZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR418DEZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB286OTZ
nucleic acid starting quantity: 24
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02589 cell line

value: cell line

value: HG02589 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS094XOD at ENCODE; https://www.encodeproject.org/ENCBS094XOD/


title: V031-CGND-HRA-02516-A

description: Library name: V031-CGND-HRA-02516-A

value: ALS

value: M


title: total RNA-seq from GM21774 (ENCLB038TBS)

description:
https://www.encodeproject.org/experiments/ENCSR413TFJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR413TFJ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB038TBS
nucleic acid starting quantity: 39
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21774 cell line

value: GM21774 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: ENCBS008OZE at ENCODE; https://www.encodeproject.org/ENCBS008OZE/


title: total RNA-seq from HG02881 (ENCLB551VPG)

description:
https://www.encodeproject.org/experiments/ENCSR413MKK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR413MKK
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB551VPG
nucleic acid starting quantity: 37
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02881 cell line

value: HG02881 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: adult

value: ENCBS126CAV at ENCODE; https://www.encodeproject.org/ENCBS126CAV/


title: CU121-U54-HRA-185-C

description: Library name: CU121-U54-HRA-185-C

value: Non-neurological control


title: CU121-U54-HRA-185-D

description: Library name: CU121-U54-HRA-185-D


title: total RNA-seq from HG03105 (ENCLB309ZJT)

description:
https://www.encodeproject.org/experiments/ENCSR412WLP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR412WLP
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB309ZJT
nucleic acid starting quantity: 23
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03105 cell line

value: HG03105 LCLs; Donor from the Esan in Nigeria (ESN)

value: ENCBS163TBO at ENCODE; https://www.encodeproject.org/ENCBS163TBO/


title: CU122-U54-HRA-185-D

description: Library name: CU122-U54-HRA-185-D


title: MO131-U54-HRA-201-GEX

description: Library name: MO131-U54-HRA-201-GEX

library_source: transcriptomic single cell

data_processing:
Sequenced 10x libraries were aligned to a standard reference genome (hg38; GENCODE v32/Ensembl98) and counted (Cellranger-ARC v2.0.2). ATAC peaks were aligned between samples for quantification (Cellranger-ARC aggr v2.0.2)
Assembly: hg38
Supplementary files format and content: atac_fragments.tsv
Supplementary files format and content: gex_molecule_info.h5
Supplementary files format and content: filtered_feature_bc_matrix.h5
Supplementary files format and content: per_barcode_metrics.csv

extract_protocol:
Nuclei isolation protocol was adapted from previously described methods (PMID: 31042697; PMID: 36385529). All procedures were carried out on ice unless otherwise stated. Frozen post-mortem brain tissue was retrieved from storage at -80 °C and equilibrated on dry ice for 20–30 minutes before being transferred to a cryostat at -18 °C. Tissue samples were left for 15–20 minutes inside the cryostat before sectioning. We collected 20-50 mg of tissue per preparation, taking care to avoid excessive sampling of white matter. Tissue cuts were placed in a pre-chilled Dounce homogenizer containing 700 µL of ice-cold homogenization buffer (320 mM sucrose, 5 mM CaCl2 [#21115; Millipore Sigma], 3 mM magnesium acetate [#63052; Millipore Sigma], 10 mM Tris HCl [pH 7.8; prepared from Thermo Fisher’s #AM9850G and #AM9855G], 0.1 mM EDTA [pH 8.0; Thermo Fisher #AM9260G], 0.1% IGEPAL CA-630 [#I8896; Millipore Sigma], 1 mM DTT [#646563, Millipore Sigma], and 0.4 U/µl Protector RNase inhibitor [#03335402001, Millipore Sigma]). Homogenization was performed with 10 strokes of the loose pestle followed by 10 strokes of the tight pestle. After a 5-minute incubation on ice, the homogenized tissue was passed through a 70-µm Flowmi Cell Strainer (Bel-Art; H13680-0070) and combined with an equal volume of a solution made of 50% OptiPrep (#07820, STEMCELL Technologies), 5 mM CaCl2, 3 mM magnesium acetate, 10 mM Tris HCl (pH 7.8), 0.1 mM EDTA (pH 8.0), and 1 mM DTT. Using a 15-mL conical tube, this mixture was then layered onto a density gradient made up of 750 µL of a 30% OptiPrep solution supplemented with 134 mM sucrose, 5 mM CaCl2, 3 mM magnesium acetate, 10 mM Tris HCl (pH 7.8), 0.1 mM EDTA (pH 8.0), 1 mM DTT, 0.04% IGEPAL CA-630, and 0.17 U µl−1 RNase inhibitor) over 300 µL of 40% OptiPrep solution supplemented with 96 mM sucrose, 5 mM CaCl2, 3 mM magnesium acetate, 10 mM Tris HCl (pH 7.8), 0.1 mM EDTA (pH 8.0), 1 mM DTT, 0.03% IGEPAL CA-630, and 0.12 U µl−1 RNase inhibitor. Nuclei were separated by centrifugation at 3,000 × g for 20 minutes at 4 °C using a pre-chilled swinging-bucket rotor with the brake off. Approximately 150 µL of nuclei were collected from the 30%/40% gradient interphase and subsequently washed in PBS containing 1% BSA and 1 U µl-1 RNase inhibitor. Following a 5-minute incubation on ice, the nuclei were centrifuged at 450 × g for 3 minutes at 4 °C, and the pellet resuspended in 15 µL of diluted 10X Genomics Nuclei Buffer. Nuclei counting was performed using a Countess II FL instrument (Thermo Fisher) by staining with SYTOX Green (ThermoFisher; S7020). Additional quality control measures included Trypan Blue staining (#EBT-001, NanoEntek) to evaluate adequate permeabilization (cutoff: >95% of ‘dead cells’) and the assessment of nuclear morphology before proceeding with transposition.
Matched snRNA-seq and snATAC-seq libraries were prepared using the Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Kit (#PN-1000283) according to the protocol provided by 10X Genomics. Nuclei (16,100 per reaction; targeted recovery: 10,000 nuclei) from a single donor were used for each library preparation. Partitioning of nuclei was performed on a Chromium X instrument (10X Genomics). Quality control of cDNAs and libraries was conducted using Agilent High Sensitivity DNA Kits and a BioAnalyzer instrument. Final library quantification prior to pooling utilized KAPA Biosystems’ Library Quantification Kit for Illumina Platforms (KK4824). Libraries were sequenced on a NovaSeq X system using a 2 × 100 bp configuration run on a 10B flow cell. BA44/45 and BA46 libraries (n = 48) were prepared and sequenced in independent batches.

tag: genotype

value: Control

value: F

tag: age at_death


title: MO130-U54-HRA-229-GEX

description: Library name: MO130-U54-HRA-229-GEX

tag: tissue


title: total RNA-seq from HG03127 (ENCLB602AFP)

description:
https://www.encodeproject.org/experiments/ENCSR410NCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410NCF
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB602AFP
nucleic acid starting quantity: 29
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03127 cell line

value: cell line

value: HG03127 LCLs; Donor from the Esan in Nigeria (ESN)

value: Stephen Montgomery, Stanford

value: ENCBS831XKO at ENCODE; https://www.encodeproject.org/ENCBS831XKO/


title: total RNA-seq from HG02839 (ENCLB801CZP)

description:
https://www.encodeproject.org/experiments/ENCSR410BNC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR410BNC
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB801CZP
nucleic acid starting quantity: 35
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02839 cell line

value: HG02839 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: Coriell

value: ENCBS774LNI at ENCODE; https://www.encodeproject.org/ENCBS774LNI/


title: MO129-U54-HRA-223-GEX

description: Library name: MO129-U54-HRA-223-GEX

value: M


title: total RNA-seq from HG03132 (ENCLB773XEK)

description:
https://www.encodeproject.org/experiments/ENCSR409MNR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR409MNR
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB773XEK
nucleic acid starting quantity: 4
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03132 cell line

value: HG03132 LCLs; Donor from the Esan in Nigeria (ESN)

value: female

value: ENCBS136DQE at ENCODE; https://www.encodeproject.org/ENCBS136DQE/


title: total RNA-seq from HG03046 (ENCLB629NEH)

description:
https://www.encodeproject.org/experiments/ENCSR406EDK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR406EDK
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB629NEH
nucleic acid starting quantity: 31
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03046 cell line

value: HG03046 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: adult

value: ENCBS804ZOM at ENCODE; https://www.encodeproject.org/ENCBS804ZOM/


title: MO127-U54-HRA-216-GEX

description: Library name: MO127-U54-HRA-216-GEX


title: MO128-U54-HRA-205-GEX

description: Library name: MO128-U54-HRA-205-GEX


title: total RNA-seq from HG03024 (ENCLB924XME)

description:
https://www.encodeproject.org/experiments/ENCSR403GEW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR403GEW
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB924XME
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03024 cell line

value: HG03024 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: male

value: ENCBS315LHV at ENCODE; https://www.encodeproject.org/ENCBS315LHV/


title: total RNA-seq from CD14-positive monocyte (ENCLB804CFM)

description:
https://www.encodeproject.org/experiments/ENCSR405UWS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR405UWS
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2026-01-26
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB804CFM

source_name: Homo sapiens male adult (24 years) CD14-positive monocyte primary cell

value: CD14-positive monocyte

value: primary cell

value: 24 year

value: John Stamatoyannopoulos, UW

value: Shelly Heimfeld

value: ENCBS584UJA at ENCODE; https://www.encodeproject.org/ENCBS584UJA/


title: MO125-CGND-HRA-04082-GEX

description: Library name: MO125-CGND-HRA-04082-GEX

value: Control

value: F


title: total RNA-seq from GM21577 (ENCLB059ESE)

description:
https://www.encodeproject.org/experiments/ENCSR402SJR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR402SJR
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB059ESE
nucleic acid starting quantity: 34
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21577 cell line

value: cell line

value: GM21577 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS666RXT at ENCODE; https://www.encodeproject.org/ENCBS666RXT/


title: MO126-U54-HRA-108-GEX

description: Library name: MO126-U54-HRA-108-GEX


title: MO124-CGND-HRA-03419-GEX

description: Library name: MO124-CGND-HRA-03419-GEX

value: ALS

value: M

tag: age at_symptom_onset

tag: site of_motor_onset

value: Bulbar


title: total RNA-seq from GM21408 (ENCLB180DHT)

description:
https://www.encodeproject.org/experiments/ENCSR399IJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR399IJT
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB180DHT
nucleic acid starting quantity: 25
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21408 cell line

value: GM21408 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

tag: Sex

value: male

value: adult

value: ENCBS619KIP at ENCODE; https://www.encodeproject.org/ENCBS619KIP/


title: MO123-CGND-HRA-00223-GEX

description: Library name: MO123-CGND-HRA-00223-GEX

tag: pmi


title: total RNA-seq from HG03442 (ENCLB002ZDK)

description:
https://www.encodeproject.org/experiments/ENCSR399DLV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR399DLV
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB002ZDK
nucleic acid starting quantity: 19
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03442 cell line

value: HG03442 LCLs; Donor from the Mende in Sierra Leone (MSL)

tag: age

value: unknown

value: ENCBS186QMI at ENCODE; https://www.encodeproject.org/ENCBS186QMI/

value: Derived from ENCODE donor ENCDO830RWV; https://www.encodeproject.org/ENCDO830RWV/


title: MO122-CGND-HRA-04087-GEX

description: Library name: MO122-CGND-HRA-04087-GEX

value: Control

value: F


title: total RNA-seq from HG02570 (ENCLB237XMU)

description:
https://www.encodeproject.org/experiments/ENCSR398WEL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR398WEL
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB237XMU
nucleic acid starting quantity: 21
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG02570 cell line

tag: line

value: cell line

value: HG02570 LCLs; Donor from the Gambian in Western Divisions in the Gambia (GWD)

value: ENCBS397ZNK at ENCODE; https://www.encodeproject.org/ENCBS397ZNK/


title: MO121-CGND-HRA-00235-GEX

description: Library name: MO121-CGND-HRA-00235-GEX


title: total RNA-seq from GM21297 (ENCLB615PDH)

description:
https://www.encodeproject.org/experiments/ENCSR398IOH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR398IOH
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB615PDH
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21297 cell line

tag: biosample encode accession

value: GM21297 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: female

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS299NJK at ENCODE; https://www.encodeproject.org/ENCBS299NJK/


title: MO120-CGND-HRA-03423-GEX

description: Library name: MO120-CGND-HRA-03423-GEX

value: ALS

value: M

value: Bulbar


title: total RNA-seq from GM21509 (ENCLB708AZW)

description:
https://www.encodeproject.org/experiments/ENCSR397EUF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR397EUF
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB708AZW
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21509 cell line

tag: encode accession

value: GM21509 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: male

value: adult

value: ENCBS420VHF at ENCODE; https://www.encodeproject.org/ENCBS420VHF/


title: MO119-U54-HRA-093-GEX

description: Library name: MO119-U54-HRA-093-GEX

value: Control


title: total RNA-seq from GM21335 (ENCLB945WQR)

description:
https://www.encodeproject.org/experiments/ENCSR396RWR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR396RWR
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB945WQR
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM21335 cell line

tag: note

value: GM21335 LCLs; Donor from the Maasai in Kinyawa, Kenya (MKK)

value: ENCBS000OJH at ENCODE; https://www.encodeproject.org/ENCBS000OJH/


title: MO118-CGND-HRA-03447-GEX

description: Library name: MO118-CGND-HRA-03447-GEX

value: Limb


title: total RNA-seq from GM19374 (ENCLB840JPA)

description:
https://www.encodeproject.org/experiments/ENCSR395XGU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR395XGU
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB840JPA
nucleic acid starting quantity: 36
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM19374 cell line

value: cell line

value: GM19374 LCLs; Donor from the Luhya in Webuye, Kenya (LWK)

tag: dev stage

value: ENCBS193DRN at ENCODE; https://www.encodeproject.org/ENCBS193DRN/


title: MO117-CGND-HRA-03441-GEX

description: Library name: MO117-CGND-HRA-03441-GEX

value: F


title: total RNA-seq from GM18505 (ENCLB377JMM)

description:
https://www.encodeproject.org/experiments/ENCSR392YTM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR392YTM
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB377JMM
nucleic acid starting quantity: 32
nucleic acid starting quantity units: µg

source_name: Homo sapiens GM18505 cell line

value: GM18505 LCLs; Donor from the Yoruba in Ibadan, Nigeria (YRI)

value: female

value: unknown

tag: lab

value: Stephen Montgomery, Stanford

value: Coriell

value: ENCBS591DIO at ENCODE; https://www.encodeproject.org/ENCBS591DIO/

value: Derived from ENCODE donor ENCDO883LPF; https://www.encodeproject.org/ENCDO883LPF/


title: MO116-CGND-HRA-03369-GEX

description: Library name: MO116-CGND-HRA-03369-GEX

value: ALS

value: Bulbar


title: total RNA-seq from HG03520 (ENCLB984OJP)

description:
https://www.encodeproject.org/experiments/ENCSR391DEQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR391DEQ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB984OJP
nucleic acid starting quantity: 3
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03520 cell line

value: HG03520 LCLs; Donor from the Esan in Nigeria (ESN)

value: adult

tag: source

value: ENCBS918VPJ at ENCODE; https://www.encodeproject.org/ENCBS918VPJ/

value: Derived from ENCODE donor ENCDO260ZRE; https://www.encodeproject.org/ENCDO260ZRE/


title: MO115-CGND-HRA-03041-GEX

description: Library name: MO115-CGND-HRA-03041-GEX


title: total RNA-seq from HG03265 (ENCLB540FVD)

description:
https://www.encodeproject.org/experiments/ENCSR390WJQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR390WJQ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB540FVD
nucleic acid starting quantity: 33
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03265 cell line

value: cell line

value: HG03265 LCLs; Donor from the Esan in Nigeria (ESN)

value: male

tag: link

value: ENCBS102HOB at ENCODE; https://www.encodeproject.org/ENCBS102HOB/


title: MO114-U54-HRA-185-GEX

description: Library name: MO114-U54-HRA-185-GEX

value: Control

value: M


title: total RNA-seq from HG03436 (ENCLB196RKX)

description:
https://www.encodeproject.org/experiments/ENCSR390OCZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR390OCZ
assay title: total RNA-seq
encode release date: 2026-05-12
lab: Stephen Montgomery, Stanford
library encode accession: ENCLB196RKX
nucleic acid starting quantity: 28
nucleic acid starting quantity units: µg

source_name: Homo sapiens HG03436 cell line

value: HG03436 LCLs; Donor from the Mende in Sierra Leone (MSL)

value: ENCBS769FMV at ENCODE; https://www.encodeproject.org/ENCBS769FMV/