title: Viral IgG PhIP-Seq for participant 108, timepoint w20, replicate 2

description: Library name: Sample_2_714


title: Viral IgG PhIP-Seq for participant 113, timepoint w20, replicate 2

status: Public on Jul 11 2026

type: SRA

city: Boston

first: Stephen

last: Elledge

state: MA

address: 77 Avenue Louis Pasteur

department: Genetics

country: USA

institute: Harvard Medical School

description: Library name: Sample_2_711

library_source: other

data_processing:
Seuqencing reads were aligned to library reference files by bowtie.
Read counts were obtained using samtools.
Read counts from multiple samples were merged to generate the read count files.
Assembly: custom peptidome library
Supplementary files format and content: IDs ranging from 1 to 128287 (but 115,753 unique reference sequences reported) vir3_metadata_geo.csv, read counts

molecule: other

organism: Homo sapiens

source_name: blood

extract_protocol:
Phage display libraries were mixed with human sera to allow antibodies from sera to bind to displayed peptides. These complexes were then immunoprecipitated using Dynabeads coated either with protein A/G (for IgG) or strepavidin conjugated to biotinylated anti-IgA antibody (for IgA). Phage were then lysed and the contained DNA coding for the displayed peptides were amplified and barcoded by PCR, pooled, gel extracted, and prepared for Illumina sequencing.
Peptide libraries tiling across the proteins from viruses that infect humans (VirScan) and the human proteome were packaged in T7 bacteriophage and expanded as described in Xu et al (DOI:10.1126/science.aaa0698) and Larman et al (DOI: 10.1038/nbt.1856).

tag: tissue

value: blood

tag: phip isotype

value: IgG

tag: participant id

tag: time point

tag: replicate

tag: run id

value: IgG Vir YL17

tag: outcome

value: birth

tag: series


title: Viral IgG PhIP-Seq for participant 113, timepoint w4, replicate 2

description: Library name: Sample_2_710


title: Viral IgG PhIP-Seq for participant 113, timepoint w12, replicate 2

description: Library name: Sample_2_709


title: Viral IgG PhIP-Seq for participant 113, timepoint Pre, replicate 2

description: Library name: Sample_2_707

value: Pre


title: Viral IgG PhIP-Seq for participant 113, timepoint w0, replicate 2

description: Library name: Sample_2_708


title: Viral IgG PhIP-Seq for participant 112, timepoint Post, replicate 2

description: Library name: Sample_2_705

value: Post


title: Viral IgG PhIP-Seq bead control S60, run IgG Vir YL17

description: Library name: Sample_2_726

value: beads


title: Viral IgG PhIP-Seq for participant 108, timepoint w12, replicate 2

description: Library name: Sample_2_703


title: Viral IgG PhIP-Seq for participant 108, timepoint w4, replicate 2

description: Library name: Sample_2_702


title: Viral IgG PhIP-Seq for participant 108, timepoint w0, replicate 2

description: Library name: Sample_2_701


title: Viral IgG PhIP-Seq for participant 108, timepoint Pre, replicate 2

description: Library name: Sample_2_700


title: Viral IgG PhIP-Seq for participant 107, timepoint w36, replicate 2

description: Library name: Sample_2_699


title: Viral IgG PhIP-Seq for participant 107, timepoint w20, replicate 2

description: Library name: Sample_2_697


title: Viral IgG PhIP-Seq for participant 107, timepoint w12, replicate 2

description: Library name: Sample_2_696


title: Viral IgG PhIP-Seq for participant 112, timepoint w4, replicate 2

description: Library name: Sample_2_694


title: Viral IgG PhIP-Seq for participant 107, timepoint w4, replicate 1

description: Library name: Sample_2_692


title: Viral IgG PhIP-Seq for participant 112, timepoint w0, replicate 2

description: Library name: Sample_2_693


title: Viral IgG PhIP-Seq for participant 112, timepoint Pre, replicate 2

description: Library name: Sample_2_691


title: Viral IgG PhIP-Seq for participant 111, timepoint Post, replicate 2

description: Library name: Sample_2_689


title: Viral IgG PhIP-Seq for participant 111, timepoint w20, replicate 2

description: Library name: Sample_2_688


title: Viral IgG PhIP-Seq for participant 111, timepoint w4, replicate 2

description: Library name: Sample_2_686


title: Viral IgG PhIP-Seq for participant 111, timepoint w0, replicate 2

description: Library name: Sample_2_685


title: Viral IgG PhIP-Seq for participant 111, timepoint Pre, replicate 2

description: Library name: Sample_2_684


title: Viral IgG PhIP-Seq for participant 107, timepoint w0, replicate 1

description: Library name: Sample_2_681


title: Viral IgG PhIP-Seq bead control S192, run IgG Vir YL17

description: Library name: Sample_2_680


title: Viral IgG PhIP-Seq bead control S191, run IgG Vir YL17

description: Library name: Sample_2_679


title: Viral IgG PhIP-Seq for participant 110, timepoint w20, replicate 2

description: Library name: Sample_2_677


title: Viral IgG PhIP-Seq for participant 119, timepoint w36, replicate 1

description: Library name: Sample_2_676


title: Viral IgG PhIP-Seq for participant 119, timepoint w20, replicate 1

description: Library name: Sample_2_674


title: Viral IgG PhIP-Seq for participant 119, timepoint w4, replicate 1

description: Library name: Sample_2_672


title: Viral IgG PhIP-Seq for participant 119, timepoint w0, replicate 1

description: Library name: Sample_2_671


title: Viral IgG PhIP-Seq for participant 112, timepoint w20, replicate 2

description: Library name: Sample_2_704


title: Viral IgG PhIP-Seq for participant 118, timepoint w36, replicate 1

description: Library name: Sample_2_669


title: Viral IgG PhIP-Seq for participant 112, timepoint w12, replicate 2

description: Library name: Sample_2_695


title: Viral IgG PhIP-Seq for participant 118, timepoint Post, replicate 1

description: Library name: Sample_2_668


title: Viral IgG PhIP-Seq for participant 118, timepoint w20, replicate 1

description: Library name: Sample_2_667


title: Viral IgG PhIP-Seq for participant 110, timepoint w12, replicate 2

description: Library name: Sample_2_666


title: Viral IgG PhIP-Seq for participant 118, timepoint w12, replicate 1

description: Library name: Sample_2_665


title: Viral IgG PhIP-Seq for participant 114, timepoint w20, replicate 2

description: Library name: Sample_2_719


title: Viral IgG PhIP-Seq for participant 118, timepoint w0, replicate 1

description: Library name: Sample_2_663


title: Viral IgG PhIP-Seq for participant 118, timepoint w4, replicate 1

description: Library name: Sample_2_664


title: Viral IgG PhIP-Seq for participant 118, timepoint Pre, replicate 1

description: Library name: Sample_2_662


title: Viral IgG PhIP-Seq for participant 117, timepoint w36, replicate 1

description: Library name: Sample_2_661


title: Viral IgG PhIP-Seq for participant 117, timepoint w20, replicate 1

description: Library name: Sample_2_659


title: Viral IgG PhIP-Seq for participant 117, timepoint Post, replicate 1

description: Library name: Sample_2_660


title: Viral IgG PhIP-Seq for participant 117, timepoint w12, replicate 1

description: Library name: Sample_2_658


title: Viral IgG PhIP-Seq for participant 114, timepoint w0, replicate 2

description: Library name: Sample_2_716


title: Viral IgG PhIP-Seq for participant 114, timepoint Pre, replicate 2

description: Library name: Sample_2_715


title: Viral IgG PhIP-Seq for participant 113, timepoint w36, replicate 2

description: Library name: Sample_2_713


title: Viral IgG PhIP-Seq for participant 117, timepoint w4, replicate 1

description: Library name: Sample_2_657


title: Viral IgG PhIP-Seq for participant 112, timepoint w36, replicate 2

description: Library name: Sample_2_706


title: Viral IgG PhIP-Seq for participant 117, timepoint w0, replicate 1

description: Library name: Sample_2_656


title: Viral IgG PhIP-Seq for participant 113, timepoint Post, replicate 2

description: Library name: Sample_2_712


title: Viral IgG PhIP-Seq for participant 110, timepoint w4, replicate 2

description: Library name: Sample_2_655


title: Viral IgG PhIP-Seq for participant 117, timepoint Pre, replicate 1

description: Library name: Sample_2_654


title: Viral IgG PhIP-Seq for participant 116, timepoint w36, replicate 1

description: Library name: Sample_2_653


title: Viral IgG PhIP-Seq for participant 116, timepoint Post, replicate 1

description: Library name: Sample_2_652


title: Viral IgG PhIP-Seq for participant 116, timepoint w20, replicate 1

description: Library name: Sample_2_651


title: Viral IgG PhIP-Seq for participant 107, timepoint Post, replicate 2

description: Library name: Sample_2_698


title: Viral IgG PhIP-Seq for participant 116, timepoint w12, replicate 1

description: Library name: Sample_2_650


title: Viral IgG PhIP-Seq for participant 115, timepoint w36, replicate 1

description: Library name: Sample_2_646


title: Viral IgG PhIP-Seq for participant 116, timepoint w4, replicate 1

description: Library name: Sample_2_649


title: Viral IgG PhIP-Seq for participant 116, timepoint Pre, replicate 1

description: Library name: Sample_2_647


title: Viral IgG PhIP-Seq for participant 116, timepoint w0, replicate 1

description: Library name: Sample_2_648


title: Viral IgG PhIP-Seq for participant 115, timepoint Post, replicate 1

description: Library name: Sample_2_645


title: Viral IgG PhIP-Seq for participant 111, timepoint w36, replicate 2

description: Library name: Sample_2_690


title: Viral IgG PhIP-Seq for participant 115, timepoint w20, replicate 1

description: Library name: Sample_2_643


title: Viral IgG PhIP-Seq for participant 110, timepoint w0, replicate 2

description: Library name: Sample_2_644


title: Viral IgG PhIP-Seq for participant 115, timepoint w12, replicate 1

description: Library name: Sample_2_642


title: Viral IgG PhIP-Seq for participant 115, timepoint w4, replicate 1

description: Library name: Sample_2_641


title: Viral IgG PhIP-Seq for participant 111, timepoint w12, replicate 2

description: Library name: Sample_2_687


title: Viral IgG PhIP-Seq bead control S156, run IgG Vir YL17

description: Library name: Sample_2_640


title: Viral IgG PhIP-Seq for participant 115, timepoint w0, replicate 1

description: Library name: Sample_2_638


title: Viral IgG PhIP-Seq bead control S155, run IgG Vir YL17

description: Library name: Sample_2_639


title: Viral IgG PhIP-Seq for participant 115, timepoint Pre, replicate 1

description: Library name: Sample_2_637


title: Viral IgG PhIP-Seq for participant 114, timepoint w36, replicate 1

description: Library name: Sample_2_636


title: Viral IgG PhIP-Seq for participant 110, timepoint Post, replicate 2

description: Library name: Sample_2_682


title: Viral IgG PhIP-Seq for participant 110, timepoint w36, replicate 2

description: Library name: Sample_2_683


title: Viral IgG PhIP-Seq for participant 114, timepoint Post, replicate 1

description: Library name: Sample_2_635


title: Viral IgG PhIP-Seq for participant 110, timepoint Pre, replicate 2

description: Library name: Sample_2_633


title: Viral IgG PhIP-Seq for participant 114, timepoint w12, replicate 1

description: Library name: Sample_2_632


title: Viral IgG PhIP-Seq for participant 114, timepoint w20, replicate 1

description: Library name: Sample_2_634


title: Viral IgG PhIP-Seq for participant 114, timepoint w4, replicate 1

description: Library name: Sample_2_631


title: Viral IgG PhIP-Seq for participant 114, timepoint w0, replicate 1

description: Library name: Sample_2_630


title: Viral IgG PhIP-Seq for participant 113, timepoint w36, replicate 1

description: Library name: Sample_2_628


title: Viral IgG PhIP-Seq for participant 114, timepoint Pre, replicate 1

description: Library name: Sample_2_629


title: Viral IgG PhIP-Seq bead control S190, run IgG Vir YL17

description: Library name: Sample_2_678


title: Viral IgG PhIP-Seq for participant 113, timepoint Post, replicate 1

description: Library name: Sample_2_627


title: Viral IgG PhIP-Seq for participant 113, timepoint w20, replicate 1

description: Library name: Sample_2_626


title: Viral IgG PhIP-Seq for participant 109, timepoint w36, replicate 2

description: Library name: Sample_2_622


title: Viral IgG PhIP-Seq for participant 113, timepoint Pre, replicate 1

description: Library name: Sample_2_621


title: Viral IgG PhIP-Seq for participant 113, timepoint w12, replicate 1

description: Library name: Sample_2_624


title: Viral IgG PhIP-Seq for participant 113, timepoint w0, replicate 1

description: Library name: Sample_2_623


title: Viral IgG PhIP-Seq for participant 113, timepoint w4, replicate 1

description: Library name: Sample_2_625


title: Viral IgG PhIP-Seq for participant 119, timepoint Post, replicate 1

description: Library name: Sample_2_675


title: Viral IgG PhIP-Seq for participant 112, timepoint w20, replicate 1

description: Library name: Sample_2_618


title: Viral IgG PhIP-Seq for participant 112, timepoint Post, replicate 1

description: Library name: Sample_2_619


title: Viral IgG PhIP-Seq for participant 108, timepoint w4, replicate 1

description: Library name: Sample_2_617


title: Viral IgG PhIP-Seq for participant 112, timepoint w36, replicate 1

description: Library name: Sample_2_620


title: Viral IgG PhIP-Seq for participant 119, timepoint w12, replicate 1

description: Library name: Sample_2_673


title: Viral IgG PhIP-Seq for participant 108, timepoint w0, replicate 1

description: Library name: Sample_2_616


title: Viral IgG PhIP-Seq for participant 108, timepoint Pre, replicate 1

description: Library name: Sample_2_615


title: Viral IgG PhIP-Seq for participant 107, timepoint w36, replicate 1

description: Library name: Sample_2_614


title: Viral IgG PhIP-Seq for participant 109, timepoint Post, replicate 2

description: Library name: Sample_2_611


title: Human IgA PhIP-Seq for participant 26, timepoint w0, replicate 2

description: Library name: Sample_3_183

data_processing:
Seuqencing reads were aligned to library reference files by bowtie.
Read counts were obtained using samtools.
Read counts from multiple samples were merged to generate the read count files.
Assembly: custom peptide library
Supplementary files format and content: * samples from `run id` "IgA Vir 1" or "IgA Vir 2" (sample titles start with "Viral IgA...") use the same "vir3_metadata_geo.csv".
Supplementary files format and content: * samples from `run id` "IgA Hum 1" (sample titles start with "Human IgA...") use "hum_260k_metadata_geo.csv" which has ids ranging from 1 to 259345.
Supplementary files format and content: * samples from `run id` "IgG Hum 1" or "IgG Hum 2" (sample titles start with "Human IgG...") use a variation of the human library for which the reference fasta is attached "hu600_50nt.fasta" with ids ranging from "hu_1" to "hu_605375".
Supplementary files format and content: counts

value: IgA

value: IgA Hum 1


title: Viral IgG PhIP-Seq for participant 107, timepoint Post, replicate 1

description: Library name: Sample_2_613


title: Viral IgG PhIP-Seq for participant 112, timepoint w0, replicate 1

description: Library name: Sample_2_607


title: Viral IgG PhIP-Seq for participant 107, timepoint w12, replicate 1

description: Library name: Sample_2_610


title: Viral IgG PhIP-Seq for participant 112, timepoint w12, replicate 1

description: Library name: Sample_2_609


title: Viral IgG PhIP-Seq for participant 112, timepoint Pre, replicate 1

description: Library name: Sample_2_606


title: Viral IgG PhIP-Seq for participant 112, timepoint w4, replicate 1

description: Library name: Sample_2_608


title: Human IgA PhIP-Seq for participant 8, timepoint w8, replicate 2

description: Library name: Sample_3_181

value: loss


title: Human IgA PhIP-Seq for participant 5, timepoint w0, replicate 2

description: Library name: Sample_3_178


title: Viral IgG PhIP-Seq for participant 107, timepoint w20, replicate 1

description: Library name: Sample_2_612


title: Viral IgG PhIP-Seq for participant 111, timepoint w36, replicate 1

description: Library name: Sample_2_605


title: Viral IgG PhIP-Seq for participant 119, timepoint Pre, replicate 1

description: Library name: Sample_2_670


title: Viral IgG PhIP-Seq for participant 111, timepoint w20, replicate 1

description: Library name: Sample_2_603


title: Viral IgG PhIP-Seq for participant 111, timepoint Post, replicate 1

description: Library name: Sample_2_604


title: Viral IgG PhIP-Seq for participant 111, timepoint w4, replicate 1

description: Library name: Sample_2_601


title: Viral IgG PhIP-Seq for participant 109, timepoint w20, replicate 2

description: Library name: Sample_2_600


title: Viral IgG PhIP-Seq for participant 111, timepoint w12, replicate 1

description: Library name: Sample_2_602


title: Viral IgG PhIP-Seq for participant 111, timepoint w0, replicate 1

description: Library name: Sample_2_599


title: Viral IgG PhIP-Seq for participant 110, timepoint w36, replicate 1

description: Library name: Sample_2_597


title: Viral IgG PhIP-Seq for participant 111, timepoint Pre, replicate 1

description: Library name: Sample_2_598


title: Viral IgG PhIP-Seq for participant 110, timepoint w20, replicate 1

description: Library name: Sample_2_595


title: Viral IgG PhIP-Seq for participant 110, timepoint Post, replicate 1

description: Library name: Sample_2_596


title: Viral IgG PhIP-Seq for participant 110, timepoint w12, replicate 1

description: Library name: Sample_2_594


title: Viral IgG PhIP-Seq for participant 110, timepoint w4, replicate 1

description: Library name: Sample_2_593


title: Viral IgG PhIP-Seq for participant 110, timepoint w0, replicate 1

description: Library name: Sample_2_592


title: Viral IgG PhIP-Seq for participant 110, timepoint Pre, replicate 1

description: Library name: Sample_2_591


title: Viral IgG PhIP-Seq for participant 109, timepoint w36, replicate 1

description: Library name: Sample_2_590


title: Viral IgG PhIP-Seq for participant 109, timepoint w20, replicate 1

description: Library name: Sample_2_587


title: Viral IgG PhIP-Seq for participant 109, timepoint Post, replicate 1

description: Library name: Sample_2_588


title: Viral IgG PhIP-Seq for participant 109, timepoint w12, replicate 2

description: Library name: Sample_2_589


title: Viral IgG PhIP-Seq for participant 109, timepoint w12, replicate 1

description: Library name: Sample_2_586


title: Viral IgG PhIP-Seq for participant 109, timepoint w4, replicate 2

description: Library name: Sample_2_585


title: Viral IgG PhIP-Seq for participant 109, timepoint w0, replicate 1

description: Library name: Sample_2_584


title: Viral IgG PhIP-Seq for participant 108, timepoint Post, replicate 1

description: Library name: Sample_2_581


title: Viral IgG PhIP-Seq for participant 108, timepoint w36, replicate 1

description: Library name: Sample_2_582


title: Viral IgG PhIP-Seq for participant 109, timepoint Pre, replicate 1

description: Library name: Sample_2_583


title: Viral IgG PhIP-Seq for participant 108, timepoint w20, replicate 1

description: Library name: Sample_2_580


title: Viral IgG PhIP-Seq for participant 108, timepoint w12, replicate 1

description: Library name: Sample_2_579


title: Viral IgG PhIP-Seq for participant 109, timepoint w4, replicate 1

description: Library name: Sample_2_578


title: Viral IgG PhIP-Seq for participant 107, timepoint Pre, replicate 1

description: Library name: Sample_2_577


title: Viral IgG PhIP-Seq for participant 94, timepoint w0, replicate 2

description: Library name: Sample_2_575

value: IgG Vir YL14


title: Viral IgG PhIP-Seq bead control S96, run IgG Vir YL14

description: Library name: Sample_2_573


title: Viral IgG PhIP-Seq bead control S95, run IgG Vir YL14

description: Library name: Sample_2_572


title: Viral IgG PhIP-Seq for participant 93, timepoint w36, replicate 2

description: Library name: Sample_2_570


title: Viral IgG PhIP-Seq for participant 94, timepoint w4, replicate 2

description: Library name: Sample_2_576


title: Viral IgG PhIP-Seq bead control S94, run IgG Vir YL14

description: Library name: Sample_2_571


title: Viral IgG PhIP-Seq for participant 94, timepoint Pre, replicate 2

description: Library name: Sample_2_574


title: Viral IgG PhIP-Seq for participant 93, timepoint w20, replicate 2

description: Library name: Sample_2_568


title: Viral IgG PhIP-Seq for participant 82, timepoint w0, replicate 2

description: Library name: Sample_2_566


title: Viral IgG PhIP-Seq for participant 93, timepoint w12, replicate 2

description: Library name: Sample_2_567


title: Viral IgG PhIP-Seq for participant 93, timepoint Post, replicate 2

description: Library name: Sample_2_569


title: Viral IgG PhIP-Seq for participant 93, timepoint w4, replicate 2

description: Library name: Sample_2_565


title: Human IgA PhIP-Seq for participant 9, timepoint w0, replicate 2

description: Library name: Sample_3_173


title: Viral IgG PhIP-Seq for participant 93, timepoint w0, replicate 2

description: Library name: Sample_2_564


title: Viral IgG PhIP-Seq for participant 93, timepoint Pre, replicate 2

description: Library name: Sample_2_563


title: PGK1_KO_replicate1

status: Public on Jul 12 2026

city: ChongQing

first: yuanze

last: zhou

address: No.30, Gaotanyan Main Street, Shapingba District

country: China

institute: The First Hospital Affiliated to Army Medical University (Southwest Hospital)

description: Library name: 241206102_P7

library_source: transcriptomic single cell

data_processing:
Raw sequencing reads were processed using CeleScope v2.0.7 (Singleron, Biotechnologies) with default parameters to generate gene expression matrices. Briefly, cell barcodes and unique molecular identifiers (UMIs) were extracted Read 1 (R1) and corrected. Adapter sequences and poly (A) tails were trimmed from Read 2 (R2), and the trimmed R2 reads were aligned to the GRCm38 (mm10) transcriptome using STARSolo in STAR (2.7.11a). Reads sharing the same cell barcode, UMI, and gene assignment were collapsed to generate the final gene-by-cell expression matrix for downstream analyses.
Assembly: GRCm38 (mm10)
Supplementary files format and content: barcodes.tsv/features.tsv/matrix.mtx files include raw counts and fpkm

molecule: polyA RNA

organism: Mus musculus

source_name: Liver

growth_protocol: PGK1 KO or PGK1 WT Hepa1-6 cells (5 × 10⁶) were suspended in 20 μL Matrigel Basement Membrane Matrix (BD Biosciences, Franklin Lakes, NJ) and injected into the subcapsular space of the left lateral liver lobe. The incision was closed with sutures, and mice were monitored in a warmed recovery chamber until fully awake. Four weeks after implantation, mice were euthanized; livers were excised and collected.

extract_protocol:
Fresh tumor tissue were washed three times with Hanks’ Balanced Salt Solution (HBSS), minced into small pieces, and dissociated using the Singleron PythoN™ Tissue Dissociation System. The resulting cell suspension was treated with the GEXSCOPE® red blood cell lysis buﬀer (RCLB, Singleron) and centrifuged to remove red blood cells. Cell viability was assessed prior to preparing single-cell suspensions at a concentration of 2 × 10⁶ cells/mL. Single-cell suspensions were loaded onto a microwell chip using the Singleron Matrix® Single Cell Processing System. Barcoding beads were collected from the microwell chip, and captured mRNA was reverse-transcribed into cDNA, which was subsequently amplified by PCR. The amplified cDNA was fragmented and ligated to sequencing adapters.
scRNA-seq libraries were constructed according to the protocol for the GEXSCOPE® Single Cell RNA Library Kits (Singleron). Individual libraries were diluted to 4 nM, pooled, and sequenced on Illumina NovaSeq 6000 with 150bp paired-end reads.

value: Liver

tag: cell line

tag: cell type

value: PGK1 KO

tag: batch


title: Viral IgG PhIP-Seq for participant 92, timepoint w36, replicate 2

description: Library name: Sample_2_562


title: Viral IgG PhIP-Seq for participant 92, timepoint w12, replicate 2

description: Library name: Sample_2_559


title: Viral IgG PhIP-Seq for participant 92, timepoint w4, replicate 2

description: Library name: Sample_2_558


title: Viral IgG PhIP-Seq for participant 92, timepoint w0, replicate 2

description: Library name: Sample_2_557


title: Viral IgG PhIP-Seq for participant 92, timepoint w20, replicate 2

description: Library name: Sample_2_560


title: Viral IgG PhIP-Seq for participant 92, timepoint Post, replicate 2

description: Library name: Sample_2_561


title: Viral IgG PhIP-Seq for participant 92, timepoint Pre, replicate 2

description: Library name: Sample_2_556


title: Viral IgG PhIP-Seq for participant 82, timepoint Pre, replicate 2

description: Library name: Sample_2_555


title: Viral IgG PhIP-Seq for participant 91, timepoint Post, replicate 2

description: Library name: Sample_2_553


title: Viral IgG PhIP-Seq for participant 91, timepoint w0, replicate 2

description: Library name: Sample_2_549


title: Viral IgG PhIP-Seq for participant 91, timepoint w4, replicate 2

description: Library name: Sample_2_550


title: Viral IgG PhIP-Seq for participant 91, timepoint w36, replicate 2

description: Library name: Sample_2_554


title: Viral IgG PhIP-Seq for participant 90, timepoint w36, replicate 2

description: Library name: Sample_2_547


title: Viral IgG PhIP-Seq for participant 91, timepoint Pre, replicate 2

description: Library name: Sample_2_548


title: Viral IgG PhIP-Seq for participant 81, timepoint w36, replicate 2

description: Library name: Sample_2_544


title: Viral IgG PhIP-Seq for participant 90, timepoint Post, replicate 2

description: Library name: Sample_2_546


title: Viral IgG PhIP-Seq for participant 90, timepoint w4, replicate 2

description: Library name: Sample_2_542


title: Viral IgG PhIP-Seq for participant 90, timepoint Pre, replicate 2

description: Library name: Sample_2_540


title: Viral IgG PhIP-Seq for participant 90, timepoint w12, replicate 2

description: Library name: Sample_2_543


title: Viral IgG PhIP-Seq for participant 89, timepoint w36, replicate 2

description: Library name: Sample_2_539


title: Viral IgG PhIP-Seq for participant 89, timepoint w20, replicate 2

description: Library name: Sample_2_537


title: Viral IgG PhIP-Seq for participant 89, timepoint w12, replicate 2

description: Library name: Sample_2_536


title: Viral IgG PhIP-Seq for participant 89, timepoint w4, replicate 2

description: Library name: Sample_2_535


title: Viral IgG PhIP-Seq for participant 81, timepoint Post, replicate 2

description: Library name: Sample_2_533


title: Viral IgG PhIP-Seq bead control S59, run IgG Vir YL14

description: Library name: Sample_2_532


title: Viral IgG PhIP-Seq for participant 89, timepoint w0, replicate 2

description: Library name: Sample_2_531


title: Viral IgG PhIP-Seq for participant 89, timepoint Pre, replicate 2

description: Library name: Sample_2_530


title: Viral IgG PhIP-Seq for participant 88, timepoint w36, replicate 2

description: Library name: Sample_2_529


title: Viral IgG PhIP-Seq for participant 88, timepoint Post, replicate 2

description: Library name: Sample_2_528


title: Viral IgG PhIP-Seq for participant 88, timepoint w20, replicate 2

description: Library name: Sample_2_527


title: Viral IgG PhIP-Seq for participant 88, timepoint w12, replicate 2

description: Library name: Sample_2_526


title: Viral IgG PhIP-Seq for participant 88, timepoint w0, replicate 2

description: Library name: Sample_2_524


title: Viral IgG PhIP-Seq for participant 88, timepoint Pre, replicate 2

description: Library name: Sample_2_523


title: Viral IgG PhIP-Seq for participant 81, timepoint w20, replicate 2

description: Library name: Sample_2_522


title: Viral IgG PhIP-Seq for participant 87, timepoint w36, replicate 2

description: Library name: Sample_2_521


title: Viral IgG PhIP-Seq for participant 87, timepoint w4, replicate 2

description: Library name: Sample_2_517


title: Viral IgG PhIP-Seq for participant 87, timepoint w12, replicate 2

description: Library name: Sample_2_518


title: Viral IgG PhIP-Seq for participant 87, timepoint w20, replicate 2

description: Library name: Sample_2_519


title: Viral IgG PhIP-Seq for participant 87, timepoint w0, replicate 2

description: Library name: Sample_2_516


title: Viral IgG PhIP-Seq for participant 86, timepoint Post, replicate 2

description: Library name: Sample_2_513


title: Viral IgG PhIP-Seq for participant 86, timepoint w20, replicate 2

description: Library name: Sample_2_512


title: Viral IgG PhIP-Seq for participant 81, timepoint w12, replicate 2

description: Library name: Sample_2_511


title: Viral IgG PhIP-Seq for participant 86, timepoint w4, replicate 2

description: Library name: Sample_2_509


title: Viral IgG PhIP-Seq for participant 86, timepoint w36, replicate 2

description: Library name: Sample_2_514


title: Viral IgG PhIP-Seq for participant 86, timepoint w12, replicate 2

description: Library name: Sample_2_510


title: Viral IgG PhIP-Seq for participant 86, timepoint w0, replicate 2

description: Library name: Sample_2_508


title: Viral IgG PhIP-Seq for participant 86, timepoint Pre, replicate 2

description: Library name: Sample_2_507


title: Viral IgG PhIP-Seq for participant 85, timepoint w20, replicate 2

description: Library name: Sample_2_504


title: Viral IgG PhIP-Seq for participant 85, timepoint w12, replicate 2

description: Library name: Sample_2_503


title: Viral IgG PhIP-Seq for participant 85, timepoint w0, replicate 2

description: Library name: Sample_2_501


title: Viral IgG PhIP-Seq for participant 85, timepoint w4, replicate 2

description: Library name: Sample_2_502


title: Viral IgG PhIP-Seq for participant 85, timepoint Pre, replicate 2

description: Library name: Sample_2_499


title: Viral IgG PhIP-Seq for participant 84, timepoint w36, replicate 2

description: Library name: Sample_2_498


title: Viral IgG PhIP-Seq for participant 84, timepoint Post, replicate 2

description: Library name: Sample_2_497


title: Viral IgG PhIP-Seq for participant 84, timepoint w20, replicate 2

description: Library name: Sample_2_496


title: Viral IgG PhIP-Seq for participant 81, timepoint w4, replicate 2

description: Library name: Sample_2_500


title: Viral IgG PhIP-Seq for participant 84, timepoint w12, replicate 2

description: Library name: Sample_2_495


title: Viral IgG PhIP-Seq for participant 84, timepoint w4, replicate 2

description: Library name: Sample_2_494


title: Viral IgG PhIP-Seq for participant 84, timepoint w0, replicate 2

description: Library name: Sample_2_493


title: Viral IgG PhIP-Seq for participant 84, timepoint Pre, replicate 2

description: Library name: Sample_2_492


title: Viral IgG PhIP-Seq for participant 83, timepoint w36, replicate 2

description: Library name: Sample_2_491


title: Viral IgG PhIP-Seq for participant 81, timepoint w0, replicate 2

description: Library name: Sample_2_489


title: Viral IgG PhIP-Seq for participant 83, timepoint Post, replicate 2

description: Library name: Sample_2_490


title: Viral IgG PhIP-Seq bead control S192, run IgG Vir YL14

description: Library name: Sample_2_488


title: Primary human CB CD34+, GEX

city: Cambridge

first: James

last: Briggs

address: 75 Ames St

institute: Broad Institute

description: Library name: sample_10-1

data_processing:
Read processing: generation of transcriptome and TF perturbation count matrices  Single-cell transcriptomes  Raw Illumina sequencing data was processed into cells x genes counts matrices using the 10X genomics cellranger-6.0.1 pipeline with default parameters. Raw BCL files were demultiplexed and converted to FASTQ format using cellranger mkfastq. Cellranger count was then used to generate counts matrices from FASTQ files. GRCh38 (version refdata-gex-GRCh38-2020-A) was used as a human reference genome for read alignment.  Single-cell TF barcodes  For single-cell TF barcode libraries, raw BCL files were demultiplexed and converted to FASTQ format using bcl2fastq2-v2.20.0 with flags: --no-lane-splitting and --mask-short-adapter-reads 10 and --sample-sheet /path/to/samplesheet.csv.  Demultiplexed FASTQ files were processed into cells x TF barcode count arrays using a custom python pipeline: process_dialout_seq.py (see GitHub repository #). Per library, the pipeline takes a R1 and R2 FASTQ path, a list of TF barcodes (from the original lentiviral pool used in the screen), and a list of cell barcodes (i.e., the pass-filter cell barcodes identified by cellranger above) as input. It outputs a dataframe of [cell barcode, TF barcode, UMI count, read count] specifying a cells vs. TF barcode count array.  This pipeline has the following main steps:  Iterate over reads and parse TF barcode, cell barcode, and UMI sequences. Output as dataframe of [TF barcode, cell barcode, UMI] sequences for pass-filter reads.  Identify key sequence (i.e., the constant sequence immediately upstream of TF barcode) in R2 Map 24-bp following key sequence to list of input TF barcodes Extract 16-bp cell barcode from R1 and map to input list of cell barcodes Extract 12-bp UMI sequence from R1 For correctly structured reads store TF barcode, cell barcode, UMI  Iterate over [cell, TF] pairs in parsed fastq and count the number of unique occurrences of each TF barcode using the UMIs. Output dataframe of [cell, TF, UMI count, read count].  Key identification, barcode mapping, and UMI counting are performed with error tolerance to account for sequencing errors. The pipeline has parameters controlling the number of sequence mismatches allowed during identification of key, TF barcode, cell barcode, and UMI sequences. We used selections of 1, 2, 1, and 1 respectively, which added tolerance to sequencing errors without endangering barcode collisions.  The pipeline is implemented to parallelize slow steps and runs in <30 minutes for a 10,000 cell dataset with 50 million reads on mid-tier Google Cloud VM instance.
Count matrix preparation  We loaded and concatenated all single-cell transcriptome count arrays into a shared AnnData object using the ScanPy54 package for single-cell analysis. We stored TF barcode counts in adata.obsm[‘TF_UMIs’] as cells x TF sparse CSR arrays. We stored corresponding TF names in adata.uns[‘TF_names’].  Cell filtering and preprocessing:  We applied the following filters to retain only high-quality cells (threshold values in Extended Data File 2): Depth filter: cell must have > min_UMIs (threshold 1k-10k UMIs) Live filter: cell must have < mito_fraction UMIs assigned to mitochondrial genes (threshold 15-20%) Doublet filter: remove cells predicted to be doublets by Scrublet55.  We scaled each cell to 1 million total UMIs to obtain units of transcripts per million (TPM).   TF barcode filtering and preprocessing:  We applied the following filters to TF barcode count data to exclude background signal (threshold values in Extended Data File 2): Depth filter: TF must be detected with > min_UMIs SNR filter: the fraction of total TF UMIs in the cell assigned to the TF must be > min_fraction  For each unique dial-out TF barcode library, the min_fraction threshold was set by inspecting per cell barcode count histograms and manually selecting a threshold that visually best separates the observed background count distribution (most barcodes observed with very few counts) from likely true signal distribution (few barcodes with significantly higher counts). The manual results were similar to those found by implementing an automated elbow identification function on the same histograms. The min_UMIs threshold was uniformly set to 5, except for one library with lower barcode detection rates that was lowered to 3.  We normalized TF expression such that pass-filter TF UMIs summed to 100 per cell and stored the resulting expression array in adata.obsm[‘TF_UMIs_filt’]. For some analysis, we then assigned an expression value of 1 to pass-filter TFs and 0 otherwise.
Assembly: GRCh38 (version refdata-gex-GRCh38-2020-A)
Supplementary files format and content: Processed .h5ad files provide annotated count matrices for scRNA-seq data. Per sample .h5ad files contain raw count data. The merged all_cells_final_v2.h5ad file contains all single cells across samples and has the following features of interest: - .X : total count normalized to 1e6 counts per cell (excluding highly expressed), then log(TPM+1) transformed - .obs['TF_subpool']: TF library used to transduce sample - .obs['timepoint']: timepoint post transduction that scSeq data was collected (or post-thaw for pHSC samples) - .obs['ddPCR_MOI']: number of TF integrations per cell measured by ddPCR - .obs['min_tot']: cell filtering threshold: minimum total number of UMIs per cell - .obs['max_mito']: cell filtering threshold: maximum allowed fraction of mitochondrial expression - .obs['min_TF_UMIs']: TF filtering threshold: minimum number of UMIs coming from expressed TFs - .obs['min_TF_frac']: TF filtering threshold: minimum fraction of UMIs per cell coming from expressed TFs - .obs['n_counts']: total UMIs detected in cell - .obs['mito_frac']: fraction of reads coming from mitochondrial genes - .obs['doublet_score']: doublet score assigned by Scrublet - .obs['sample']: scSeq library ID - .obsm['TF_UMIs_filt']: filtered to only expressed TFs, normalized so max TF per cell = 100TPMs - .obsm['TF_UMIs']: raw TF UMI expression - .uns['TF_names']: list of column names for TF expression matrices  TF_counts.csv files contain raw cells vs. TFs count matrices output from process_dialout_seq.py run on the TF dialout fastq files.

source_name: Primary umbilical cord CD34+ cells (C-12921, Sigma)

extract_protocol:
10X genomics 3’ transcriptome kit with v3.1 chemistry (10X genomics #1000268) processing of dissociated single cells, as per the manufacturer’s instructions.
All single-cell RNA-seq libraries were generated using the 10X genomics 3’ transcriptome kit with v3.1 chemistry (10X genomics #1000268) as per the manufacturer’s instructions. We targeted a loading concentration of 10,000 cells / lane and washed cells thoroughly in PBS-/- prior to loading to minimize background RNA contamination. We dual-indexed libraries during PCR2 using the Dual Index Kit TT (Set A; 10X genomics #1000215).  We generated corresponding single-cell TF barcode libraries by performing dial-out PCR on a sample of the 10X PCR1 product. Our primers were designed to generate a ~1.2-kb product compatible with Illumina TruSeq chemistry such that the TF barcode is sequenced by read 2 and the 10X cell barcode by read 1 (Extended Data File 5). The forward primer anneals to the 10X PCR2 adapter sequence upstream of the 10X cell barcode and adds an Illumina p5 adapter, 8-bp barcode, and TruSeq R1 primer annealing site. The reverse primer anneals immediately 5’ of the 24-bp TF barcode and adds an Illumina p7 adapter, 8-bp barcode, TruSeq R2 primer annealing site, and 12-bp stagger to increase sequence diversity. Amplification was performed using NEBNext HiFi polymerase mix (NEB #M0541L). 5% of the total 10X PCR1 product was used template – i.e., 2 uL containing ~50 ng DNA. Primers were used at a 0.25 uM final concentration. Cycling conditions were: 1. 98°C 3 minutes; 2. 20 x [98°C 10 seconds, 60°C 10 seconds, 72°C 1 minute]; 3. 72°C 1 minute. PCR product was purified for sequencing with a 0.8X SPRI selection (Beckman Coulter #B23317). Successful amplification and purification of the expected 1.2-kb product was verified by High-Sensitivity DNA Analysis (Agilent #5067-4626).  Single-cell transcriptome libraries were pooled and sequenced on an Illumina NextSeq. We typically pooled up to 40,000 cells per sequencing run and targeted 20,000 reads/cell sequencing depth. We used High-Output 500/550 v2.5 75-cycle kits with the following read distribution: R1: 28, R2: 44, i7: 10, i5: 10. Corresponding single-cell TF barcode libraries were pooled and sequenced similarly, but with the following read distribution: R1: 28, R2: 53, i7: 0, i5: 8.

tag: culture media

value: Hematopoietic Progenitor Expansion Media DXF, plus Cytokine Mix E (Sigma)

tag: differentiation timepoint_(days)

tag: enrichment

tag: tf subpool

tag: min umis

tag: max mito_fraction

tag: min tf_umis

tag: min tf_fraction

tag: library type

value: GEX


title: Viral IgG PhIP-Seq for participant 83, timepoint w20, replicate 2

description: Library name: Sample_2_485

tag: tissue

tag: phip isotype

tag: participant id

tag: time point


title: Viral IgG PhIP-Seq bead control S191, run IgG Vir YL14

description: Library name: Sample_2_487

tag: run id

tag: series


title: Viral IgG PhIP-Seq bead control S190, run IgG Vir YL14

description: Library name: Sample_2_486


title: Viral IgG PhIP-Seq for participant 106, timepoint w36, replicate 2

description: Library name: Sample_2_484

tag: replicate

tag: outcome


title: Viral IgG PhIP-Seq for participant 106, timepoint w20, replicate 2

description: Library name: Sample_2_482


title: Viral IgG PhIP-Seq for participant 106, timepoint Post, replicate 2

description: Library name: Sample_2_483


title: Viral IgG PhIP-Seq for participant 106, timepoint w4, replicate 2

description: Library name: Sample_2_480


title: Viral IgG PhIP-Seq for participant 106, timepoint w0, replicate 2

description: Library name: Sample_2_479


title: Viral IgG PhIP-Seq for participant 106, timepoint Pre, replicate 2

description: Library name: Sample_2_478


title: Viral IgG PhIP-Seq for participant 105, timepoint w36, replicate 2

description: Library name: Sample_2_477


title: Viral IgG PhIP-Seq for participant 105, timepoint Post, replicate 2

description: Library name: Sample_2_476


title: Viral IgG PhIP-Seq for participant 91, timepoint w20, replicate 2

description: Library name: Sample_2_552


title: Viral IgG PhIP-Seq for participant 105, timepoint w20, replicate 2

description: Library name: Sample_2_475


title: Viral IgG PhIP-Seq for participant 105, timepoint w12, replicate 2

description: Library name: Sample_2_473


title: Viral IgG PhIP-Seq for participant 83, timepoint w12, replicate 2

description: Library name: Sample_2_474


title: Viral IgG PhIP-Seq for participant 105, timepoint w4, replicate 2

description: Library name: Sample_2_472


title: Viral IgG PhIP-Seq for participant 105, timepoint w0, replicate 2

description: Library name: Sample_2_471


title: Viral IgG PhIP-Seq for participant 104, timepoint w36, replicate 2

description: Library name: Sample_2_469


title: Viral IgG PhIP-Seq for participant 104, timepoint Post, replicate 2

description: Library name: Sample_2_468


title: Viral IgG PhIP-Seq for participant 104, timepoint w4, replicate 2

description: Library name: Sample_2_465


title: Viral IgG PhIP-Seq for participant 104, timepoint w0, replicate 2

description: Library name: Sample_2_464


title: Viral IgG PhIP-Seq for participant 104, timepoint Pre, replicate 2

description: Library name: Sample_2_462


title: Viral IgG PhIP-Seq for participant 103, timepoint Post, replicate 2

description: Library name: Sample_2_460


title: Viral IgG PhIP-Seq for participant 103, timepoint w12, replicate 2

description: Library name: Sample_2_458


title: Viral IgG PhIP-Seq for participant 103, timepoint w20, replicate 2

description: Library name: Sample_2_459


title: Viral IgG PhIP-Seq for participant 103, timepoint w4, replicate 2

description: Library name: Sample_2_457


title: Viral IgG PhIP-Seq for participant 87, timepoint Post, replicate 2

description: Library name: Sample_2_520


title: Viral IgG PhIP-Seq for participant 103, timepoint w0, replicate 2

description: Library name: Sample_2_456


title: Viral IgG PhIP-Seq for participant 102, timepoint w36, replicate 2

description: Library name: Sample_2_454


title: Viral IgG PhIP-Seq for participant 102, timepoint Post, replicate 2

description: Library name: Sample_2_453


title: Viral IgG PhIP-Seq for participant 83, timepoint w0, replicate 2

description: Library name: Sample_2_452


title: Viral IgG PhIP-Seq for participant 103, timepoint Pre, replicate 2

description: Library name: Sample_2_455


title: Viral IgG PhIP-Seq for participant 102, timepoint w20, replicate 2

description: Library name: Sample_2_451


title: Viral IgG PhIP-Seq for participant 102, timepoint w12, replicate 2

description: Library name: Sample_2_450


title: Viral IgG PhIP-Seq bead control S156, run IgG Vir YL14

description: Library name: Sample_2_448


title: Viral IgG PhIP-Seq bead control S155, run IgG Vir YL14

description: Library name: Sample_2_447


title: Viral IgG PhIP-Seq for participant 102, timepoint w0, replicate 2

description: Library name: Sample_2_446


title: Viral IgG PhIP-Seq for participant 102, timepoint Pre, replicate 2

description: Library name: Sample_2_445


title: Viral IgG PhIP-Seq for participant 101, timepoint w20, replicate 2

description: Library name: Sample_2_442


title: Viral IgG PhIP-Seq for participant 101, timepoint Post, replicate 2

description: Library name: Sample_2_443


title: Viral IgG PhIP-Seq for participant 101, timepoint w36, replicate 2

description: Library name: Sample_2_444


title: Viral IgG PhIP-Seq for participant 83, timepoint Pre, replicate 2

description: Library name: Sample_2_441


title: Viral IgG PhIP-Seq for participant 101, timepoint w12, replicate 2

description: Library name: Sample_2_440


title: Viral IgG PhIP-Seq for participant 101, timepoint w4, replicate 2

description: Library name: Sample_2_439


title: Viral IgG PhIP-Seq for participant 101, timepoint Pre, replicate 2

description: Library name: Sample_2_437


title: Viral IgG PhIP-Seq for participant 100, timepoint w20, replicate 2

description: Library name: Sample_2_434


title: Viral IgG PhIP-Seq for participant 100, timepoint Post, replicate 2

description: Library name: Sample_2_435


title: Viral IgG PhIP-Seq for participant 100, timepoint w36, replicate 2

description: Library name: Sample_2_436


title: Viral IgG PhIP-Seq for participant 100, timepoint w12, replicate 2

description: Library name: Sample_2_433


title: Viral IgG PhIP-Seq for participant 100, timepoint w4, replicate 2

description: Library name: Sample_2_432


title: Viral IgG PhIP-Seq for participant 100, timepoint w0, replicate 2

description: Library name: Sample_2_431


title: Viral IgG PhIP-Seq for participant 82, timepoint w36, replicate 2

description: Library name: Sample_2_430


title: Human IgA PhIP-Seq for participant 19, timepoint w0, replicate 2

description: Library name: Sample_3_184


title: Viral IgG PhIP-Seq for participant 99, timepoint Post, replicate 2

description: Library name: Sample_2_427


title: Viral IgG PhIP-Seq for participant 99, timepoint w36, replicate 2

description: Library name: Sample_2_428


title: Viral IgG PhIP-Seq for participant 100, timepoint Pre, replicate 2

description: Library name: Sample_2_429


title: Viral IgG PhIP-Seq for participant 99, timepoint w20, replicate 2

description: Library name: Sample_2_426


title: Viral IgG PhIP-Seq for participant 99, timepoint w12, replicate 2

description: Library name: Sample_2_425


title: Viral IgG PhIP-Seq for participant 99, timepoint w4, replicate 2

description: Library name: Sample_2_424


title: Viral IgG PhIP-Seq for participant 99, timepoint w0, replicate 2

description: Library name: Sample_2_423


title: Viral IgG PhIP-Seq for participant 99, timepoint Pre, replicate 2

description: Library name: Sample_2_422


title: Viral IgG PhIP-Seq for participant 104, timepoint w12, replicate 2

description: Library name: Sample_2_466


title: Viral IgG PhIP-Seq for participant 83, timepoint w4, replicate 2

description: Library name: Sample_2_463


title: Viral IgG PhIP-Seq for participant 104, timepoint w20, replicate 2

description: Library name: Sample_2_467


title: Viral IgG PhIP-Seq for participant 98, timepoint Post, replicate 2

description: Library name: Sample_2_420


title: Viral IgG PhIP-Seq for participant 82, timepoint Post, replicate 2

description: Library name: Sample_2_419


title: Viral IgG PhIP-Seq for participant 98, timepoint w12, replicate 2

description: Library name: Sample_2_417


title: Viral IgG PhIP-Seq for participant 98, timepoint w4, replicate 2

description: Library name: Sample_2_416


title: Viral IgG PhIP-Seq for participant 98, timepoint w0, replicate 2

description: Library name: Sample_2_415


title: Viral IgG PhIP-Seq for participant 98, timepoint Pre, replicate 2

description: Library name: Sample_2_414


title: Viral IgG PhIP-Seq for participant 97, timepoint w36, replicate 2

description: Library name: Sample_2_413


title: Viral IgG PhIP-Seq for participant 97, timepoint Post, replicate 2

description: Library name: Sample_2_412


title: Viral IgG PhIP-Seq for participant 97, timepoint w20, replicate 2

description: Library name: Sample_2_411


title: Viral IgG PhIP-Seq for participant 97, timepoint w4, replicate 2

description: Library name: Sample_2_409


title: Viral IgG PhIP-Seq for participant 82, timepoint w20, replicate 2

description: Library name: Sample_2_408


title: Viral IgG PhIP-Seq for participant 97, timepoint w0, replicate 2

description: Library name: Sample_2_407


title: Viral IgG PhIP-Seq for participant 96, timepoint w36, replicate 2

description: Library name: Sample_2_405


title: Viral IgG PhIP-Seq for participant 97, timepoint Pre, replicate 2

description: Library name: Sample_2_406


title: Viral IgG PhIP-Seq for participant 96, timepoint w20, replicate 2

description: Library name: Sample_2_403


title: Viral IgG PhIP-Seq for participant 96, timepoint w4, replicate 2

description: Library name: Sample_2_401


title: Viral IgG PhIP-Seq for participant 96, timepoint w0, replicate 2

description: Library name: Sample_2_400


title: Viral IgG PhIP-Seq for participant 96, timepoint Pre, replicate 2

description: Library name: Sample_2_399


title: Viral IgG PhIP-Seq for participant 95, timepoint Post, replicate 2

description: Library name: Sample_2_396


title: Viral IgG PhIP-Seq for participant 82, timepoint w12, replicate 2

description: Library name: Sample_2_397


title: Viral IgG PhIP-Seq for participant 95, timepoint w20, replicate 2

description: Library name: Sample_2_395


title: Viral IgG PhIP-Seq for participant 95, timepoint w4, replicate 2

description: Library name: Sample_2_393


title: Viral IgG PhIP-Seq for participant 95, timepoint Pre, replicate 2

description: Library name: Sample_2_391


title: Viral IgG PhIP-Seq for participant 94, timepoint w36, replicate 2

description: Library name: Sample_2_390


title: Viral IgG PhIP-Seq for participant 94, timepoint Post, replicate 2

description: Library name: Sample_2_389


title: Viral IgG PhIP-Seq for participant 94, timepoint w20, replicate 2

description: Library name: Sample_2_388


title: Viral IgG PhIP-Seq for participant 94, timepoint w12, replicate 2

description: Library name: Sample_2_387


title: Viral IgG PhIP-Seq for participant 82, timepoint w4, replicate 2

description: Library name: Sample_2_386


title: Viral IgG PhIP-Seq for participant 81, timepoint Pre, replicate 2

description: Library name: Sample_2_385


title: Viral IgG PhIP-Seq for participant 94, timepoint w0, replicate 1

description: Library name: Sample_2_383

value: IgG Vir YL13


title: Viral IgG PhIP-Seq for participant 94, timepoint Pre, replicate 1

description: Library name: Sample_2_382


title: Viral IgG PhIP-Seq bead control S95, run IgG Vir YL13

description: Library name: Sample_2_380


title: NT_D4_J_rep2

city: Adelaide

first: Yan

last: Zhou

state: South Australia

address: 108 North Terrace

department: Biological science

country: Australia

institute: Adelaide University

description:
Library name: 1-8J
Jejunum epithelium sample collected at D4 after fractionated abdominal irradiation from the irradiated non-treated control group; biological replicate 2.

library_source: transcriptomic

data_processing:
Adapter and low-quality sequences were trimmed using BBDuk with parameters hdist=1, mink=11, ktrim=r, qtrim=rl, trimq=20, minlen=25, and trimpolyg=20.
Trimmed reads were aligned to the Rattus norvegicus reference genome using STAR v2.7.10a with mismatchNoverLmax set to 0.03 and alignIntronMax set to 10000.
Gene counts were generated from aligned reads and lowly expressed genes were filtered before downstream analysis.
Assembly: Rattus norvegicus reference genome mRatBN7.2 (Ensembl release 107)
Supplementary files format and content: The file contains the raw read count matrix for all genes across all samples.

molecule: total RNA

organism: Rattus norvegicus

source_name: jejunum epithelium

growth_protocol: Sprague Dawley rats were maintained under standard laboratory conditions with access to food and water according to the approved animal ethics protocol.

extract_protocol:
Total RNA was extracted from colon and jejunum epithelial tissues. RNA quality and quantity were assessed before library preparation. Samples passing quality-control criteria were used for bulk RNA sequencing.
RNA-seq libraries were prepared from total RNA using a transcriptome library preparation protocol and sequenced on a DNBSEQ-G400 platform using paired-end 150 bp sequencing.

treatment_protocol: Rats received fractionated abdominal irradiation at 5 × 4 Gy from day 0 to day 4. Compound Kushen powder, compound Kushen injection, or corresponding vehicle treatments were administered according to the experimental design. Colon and jejunum epithelial tissues were collected at day 4 or day 7 after irradiation.

value: jejunum epithelium

tag: treatment

value: abdominal irradiation only; no drug treatment


title: Viral IgG PhIP-Seq for participant 93, timepoint w36, replicate 1

description: Library name: Sample_2_378

value: blood

value: IgG


title: Viral IgG PhIP-Seq for participant 93, timepoint Post, replicate 1

description: Library name: Sample_2_377

value: birth


title: Viral IgG PhIP-Seq bead control S94, run IgG Vir YL13

description: Library name: Sample_2_379


title: Viral IgG PhIP-Seq for participant 93, timepoint w12, replicate 1

description: Library name: Sample_2_375


title: Viral IgG PhIP-Seq for participant 98, timepoint w36, replicate 2

description: Library name: Sample_2_421


title: Viral IgG PhIP-Seq for participant 98, timepoint w20, replicate 2

description: Library name: Sample_2_418


title: Viral IgG PhIP-Seq for participant 82, timepoint w0, replicate 1

description: Library name: Sample_2_374


title: Viral IgG PhIP-Seq for participant 93, timepoint w20, replicate 1

description: Library name: Sample_2_376


title: Viral IgG PhIP-Seq for participant 97, timepoint w12, replicate 2

description: Library name: Sample_2_410


title: Viral IgG PhIP-Seq for participant 93, timepoint w4, replicate 1

description: Library name: Sample_2_373


title: Viral IgG PhIP-Seq for participant 93, timepoint w0, replicate 1

description: Library name: Sample_2_372


title: Viral IgG PhIP-Seq for participant 93, timepoint Pre, replicate 1

description: Library name: Sample_2_371

value: Pre


title: Viral IgG PhIP-Seq for participant 96, timepoint Post, replicate 2

description: Library name: Sample_2_404

value: Post


title: Viral IgG PhIP-Seq for participant 96, timepoint w12, replicate 2

description: Library name: Sample_2_402


title: Viral IgG PhIP-Seq for participant 92, timepoint Post, replicate 1

description: Library name: Sample_2_369


title: Viral IgG PhIP-Seq for participant 92, timepoint w36, replicate 1

description: Library name: Sample_2_370


title: Viral IgG PhIP-Seq for participant 92, timepoint w20, replicate 1

description: Library name: Sample_2_368


title: Viral IgG PhIP-Seq for participant 92, timepoint w12, replicate 1

description: Library name: Sample_2_367


title: Viral IgG PhIP-Seq for participant 92, timepoint w4, replicate 1

description: Library name: Sample_2_366


title: Viral IgG PhIP-Seq for participant 95, timepoint w36, replicate 2

description: Library name: Sample_2_398


title: Viral IgG PhIP-Seq for participant 92, timepoint Pre, replicate 1

description: Library name: Sample_2_364


title: Viral IgG PhIP-Seq for participant 92, timepoint w0, replicate 1

description: Library name: Sample_2_365


title: Viral IgG PhIP-Seq for participant 91, timepoint w36, replicate 1

description: Library name: Sample_2_362


title: Viral IgG PhIP-Seq for participant 82, timepoint Pre, replicate 1

description: Library name: Sample_2_363


title: Viral IgG PhIP-Seq for participant 91, timepoint Post, replicate 1

description: Library name: Sample_2_361


title: Viral IgG PhIP-Seq for participant 91, timepoint w20, replicate 1

description: Library name: Sample_2_360


title: Viral IgG PhIP-Seq for participant 95, timepoint w12, replicate 2

description: Library name: Sample_2_394


title: Viral IgG PhIP-Seq for participant 91, timepoint w12, replicate 1

description: Library name: Sample_2_359


title: Viral IgG PhIP-Seq for participant 91, timepoint w4, replicate 1

description: Library name: Sample_2_358


title: Viral IgG PhIP-Seq for participant 91, timepoint w0, replicate 1

description: Library name: Sample_2_357


title: Viral IgG PhIP-Seq for participant 91, timepoint Pre, replicate 1

description: Library name: Sample_2_356


title: Viral IgG PhIP-Seq for participant 90, timepoint w36, replicate 1

description: Library name: Sample_2_355


title: Viral IgG PhIP-Seq for participant 95, timepoint w0, replicate 2

description: Library name: Sample_2_392


title: Viral IgG PhIP-Seq for participant 90, timepoint Post, replicate 1

description: Library name: Sample_2_354


title: Viral IgG PhIP-Seq for participant 90, timepoint w20, replicate 1

description: Library name: Sample_2_353


title: Viral IgG PhIP-Seq for participant 90, timepoint w12, replicate 1

description: Library name: Sample_2_351


title: Viral IgG PhIP-Seq for participant 81, timepoint w36, replicate 1

description: Library name: Sample_2_352


title: Viral IgG PhIP-Seq for participant 90, timepoint w0, replicate 1

description: Library name: Sample_2_349


title: Viral IgG PhIP-Seq for participant 90, timepoint Pre, replicate 1

description: Library name: Sample_2_348


title: Viral IgG PhIP-Seq for participant 89, timepoint w36, replicate 1

description: Library name: Sample_2_347


title: Viral IgG PhIP-Seq for participant 90, timepoint w4, replicate 1

description: Library name: Sample_2_350


title: Viral IgG PhIP-Seq for participant 89, timepoint Post, replicate 1

description: Library name: Sample_2_346


title: Viral IgG PhIP-Seq for participant 89, timepoint w20, replicate 1

description: Library name: Sample_2_345


title: Viral IgG PhIP-Seq for participant 89, timepoint w4, replicate 1

description: Library name: Sample_2_343


title: Viral IgG PhIP-Seq for participant 89, timepoint w12, replicate 1

description: Library name: Sample_2_344


title: Viral IgG PhIP-Seq bead control S60, run IgG Vir YL13

description: Library name: Sample_2_342

value: beads


title: Viral IgG PhIP-Seq for participant 81, timepoint Post, replicate 1

description: Library name: Sample_2_341


title: Viral IgG PhIP-Seq for participant 89, timepoint w0, replicate 1

description: Library name: Sample_2_339


title: Viral IgG PhIP-Seq bead control S59, run IgG Vir YL13

description: Library name: Sample_2_340


title: Viral IgG PhIP-Seq for participant 89, timepoint Pre, replicate 1

description: Library name: Sample_2_338


title: Viral IgG PhIP-Seq for participant 88, timepoint Post, replicate 1

description: Library name: Sample_2_336


title: Viral IgG PhIP-Seq for participant 88, timepoint w36, replicate 1

description: Library name: Sample_2_337


title: Viral IgG PhIP-Seq for participant 88, timepoint w12, replicate 1

description: Library name: Sample_2_334


title: Viral IgG PhIP-Seq for participant 88, timepoint w4, replicate 1

description: Library name: Sample_2_333


title: Viral IgG PhIP-Seq for participant 88, timepoint w20, replicate 1

description: Library name: Sample_2_335


title: Viral IgG PhIP-Seq for participant 94, timepoint w4, replicate 1

description: Library name: Sample_2_384


title: Viral IgG PhIP-Seq for participant 88, timepoint w0, replicate 1

description: Library name: Sample_2_332


title: Viral IgG PhIP-Seq for participant 88, timepoint Pre, replicate 1

description: Library name: Sample_2_331


title: Viral IgG PhIP-Seq for participant 81, timepoint w20, replicate 1

description: Library name: Sample_2_330


title: Viral IgG PhIP-Seq for participant 87, timepoint Post, replicate 1

description: Library name: Sample_2_328


title: Viral IgG PhIP-Seq for participant 87, timepoint w36, replicate 1

description: Library name: Sample_2_329


title: Viral IgG PhIP-Seq for participant 87, timepoint w12, replicate 1

description: Library name: Sample_2_326


title: Viral IgG PhIP-Seq for participant 87, timepoint w4, replicate 1

description: Library name: Sample_2_325


title: Viral IgG PhIP-Seq for participant 87, timepoint w20, replicate 1

description: Library name: Sample_2_327


title: Viral IgG PhIP-Seq for participant 87, timepoint Pre, replicate 1

description: Library name: Sample_2_323


title: Viral IgG PhIP-Seq for participant 87, timepoint w0, replicate 1

description: Library name: Sample_2_324


title: Viral IgG PhIP-Seq for participant 86, timepoint w36, replicate 1

description: Library name: Sample_2_322


title: Viral IgG PhIP-Seq for participant 86, timepoint Post, replicate 1

description: Library name: Sample_2_321


title: Viral IgG PhIP-Seq for participant 86, timepoint w20, replicate 1

description: Library name: Sample_2_320


title: Viral IgG PhIP-Seq bead control S96, run IgG Vir YL13

description: Library name: Sample_2_381


title: Viral IgG PhIP-Seq for participant 81, timepoint w12, replicate 1

description: Library name: Sample_2_319


title: Viral IgG PhIP-Seq for participant 86, timepoint Pre, replicate 1

description: Library name: Sample_2_315


title: Viral IgG PhIP-Seq for participant 86, timepoint w0, replicate 1

description: Library name: Sample_2_316


title: Viral IgG PhIP-Seq for participant 85, timepoint w36, replicate 1

description: Library name: Sample_2_314


title: Viral IgG PhIP-Seq for participant 86, timepoint w4, replicate 1

description: Library name: Sample_2_317


title: Viral IgG PhIP-Seq for participant 86, timepoint w12, replicate 1

description: Library name: Sample_2_318


title: Viral IgG PhIP-Seq for participant 85, timepoint w20, replicate 1

description: Library name: Sample_2_312


title: Viral IgG PhIP-Seq for participant 85, timepoint w4, replicate 1

description: Library name: Sample_2_310


title: Viral IgG PhIP-Seq for participant 85, timepoint w0, replicate 1

description: Library name: Sample_2_309


title: Viral IgG PhIP-Seq for participant 81, timepoint w4, replicate 1

description: Library name: Sample_2_308


title: Viral IgG PhIP-Seq for participant 85, timepoint Pre, replicate 1

description: Library name: Sample_2_307


title: Viral IgG PhIP-Seq for participant 84, timepoint w36, replicate 1

description: Library name: Sample_2_306


title: Viral IgG PhIP-Seq for participant 90, timepoint w20, replicate 2

description: Library name: Sample_2_545


title: Viral IgG PhIP-Seq for participant 84, timepoint w20, replicate 1

description: Library name: Sample_2_304


title: Viral IgG PhIP-Seq for participant 84, timepoint w4, replicate 1

description: Library name: Sample_2_302


title: Viral IgG PhIP-Seq for participant 84, timepoint Post, replicate 1

description: Library name: Sample_2_305


title: Viral IgG PhIP-Seq for participant 84, timepoint w0, replicate 1

description: Library name: Sample_2_301


title: Viral IgG PhIP-Seq for participant 84, timepoint w12, replicate 1

description: Library name: Sample_2_303


title: Viral IgG PhIP-Seq for participant 85, timepoint Post, replicate 1

description: Library name: Sample_2_313


title: Viral IgG PhIP-Seq bead control S60, run IgG Vir YL14

description: Library name: Sample_2_534


title: Viral IgG PhIP-Seq for participant 84, timepoint Pre, replicate 1

description: Library name: Sample_2_300


title: Viral IgG PhIP-Seq for participant 83, timepoint Post, replicate 1

description: Library name: Sample_2_298


title: Viral IgG PhIP-Seq for participant 83, timepoint w36, replicate 1

description: Library name: Sample_2_299


title: Viral IgG PhIP-Seq bead control S192, run IgG Vir YL13

description: Library name: Sample_2_296


title: Viral IgG PhIP-Seq for participant 81, timepoint w0, replicate 1

description: Library name: Sample_2_297


title: Viral IgG PhIP-Seq bead control S191, run IgG Vir YL13

description: Library name: Sample_2_295


title: Viral IgG PhIP-Seq bead control S190, run IgG Vir YL13

description: Library name: Sample_2_294


title: Viral IgG PhIP-Seq for participant 83, timepoint w20, replicate 1

description: Library name: Sample_2_293


title: Viral IgG PhIP-Seq for participant 106, timepoint w36, replicate 1

description: Library name: Sample_2_292


title: Viral IgG PhIP-Seq for participant 106, timepoint Post, replicate 1

description: Library name: Sample_2_291


title: Viral IgG PhIP-Seq for participant 106, timepoint w20, replicate 1

description: Library name: Sample_2_290


title: Viral IgG PhIP-Seq for participant 106, timepoint w12, replicate 1

description: Library name: Sample_2_289


title: Viral IgA PhIP-Seq for participant 15, timepoint Pre, replicate 2

description: Library name: Sample_3_574

value: IgA

value: IgA Vir 2


title: Viral IgG PhIP-Seq for participant 106, timepoint w4, replicate 1

description: Library name: Sample_2_288


title: Viral IgG PhIP-Seq for participant 106, timepoint w0, replicate 1

description: Library name: Sample_2_287


title: Viral IgG PhIP-Seq for participant 105, timepoint w36, replicate 1

description: Library name: Sample_2_285


title: Viral IgG PhIP-Seq for participant 106, timepoint Pre, replicate 1

description: Library name: Sample_2_286


title: Viral IgG PhIP-Seq for participant 105, timepoint Post, replicate 1

description: Library name: Sample_2_284


title: Viral IgG PhIP-Seq for participant 105, timepoint w20, replicate 1

description: Library name: Sample_2_283


title: Viral IgG PhIP-Seq for participant 83, timepoint w12, replicate 1

description: Library name: Sample_2_282


title: Viral IgG PhIP-Seq for participant 85, timepoint Post, replicate 2

description: Library name: Sample_2_505


title: Viral IgG PhIP-Seq for participant 105, timepoint w0, replicate 1

description: Library name: Sample_2_279


title: Viral IgG PhIP-Seq for participant 105, timepoint w4, replicate 1

description: Library name: Sample_2_280


title: Viral IgG PhIP-Seq for participant 105, timepoint Pre, replicate 1

description: Library name: Sample_2_278


title: Viral IgG PhIP-Seq for participant 104, timepoint w36, replicate 1

description: Library name: Sample_2_277


title: Viral IgG PhIP-Seq for participant 105, timepoint w12, replicate 1

description: Library name: Sample_2_281


title: Viral IgG PhIP-Seq for participant 104, timepoint Post, replicate 1

description: Library name: Sample_2_276


title: Viral IgG PhIP-Seq for participant 104, timepoint w20, replicate 1

description: Library name: Sample_2_275


title: Viral IgG PhIP-Seq for participant 104, timepoint w4, replicate 1

description: Library name: Sample_2_273


title: Viral IgG PhIP-Seq for participant 104, timepoint w12, replicate 1

description: Library name: Sample_2_274


title: Viral IgG PhIP-Seq for participant 85, timepoint w12, replicate 1

description: Library name: Sample_2_311


title: Viral IgG PhIP-Seq for participant 104, timepoint w0, replicate 1

description: Library name: Sample_2_272


title: Viral IgG PhIP-Seq for participant 83, timepoint w4, replicate 1

description: Library name: Sample_2_271


title: Viral IgG PhIP-Seq for participant 104, timepoint Pre, replicate 1

description: Library name: Sample_2_270


title: Viral IgG PhIP-Seq for participant 103, timepoint Post, replicate 1

description: Library name: Sample_2_268


title: Viral IgG PhIP-Seq for participant 103, timepoint w36, replicate 1

description: Library name: Sample_2_269


title: Viral IgG PhIP-Seq for participant 103, timepoint w20, replicate 1

description: Library name: Sample_2_267


title: Viral IgG PhIP-Seq for participant 103, timepoint w12, replicate 1

description: Library name: Sample_2_266


title: Viral IgG PhIP-Seq for participant 103, timepoint Pre, replicate 1

description: Library name: Sample_2_263


title: Viral IgG PhIP-Seq for participant 103, timepoint w4, replicate 1

description: Library name: Sample_2_265


title: Viral IgG PhIP-Seq for participant 103, timepoint w0, replicate 1

description: Library name: Sample_2_264


title: Viral IgG PhIP-Seq for participant 102, timepoint w36, replicate 1

description: Library name: Sample_2_262


title: Viral IgG PhIP-Seq for participant 102, timepoint Post, replicate 1

description: Library name: Sample_2_261


title: Viral IgG PhIP-Seq for participant 102, timepoint w20, replicate 1

description: Library name: Sample_2_259


title: Viral IgG PhIP-Seq for participant 102, timepoint w12, replicate 1

description: Library name: Sample_2_258


title: Viral IgG PhIP-Seq for participant 83, timepoint w0, replicate 1

description: Library name: Sample_2_260


title: Viral IgG PhIP-Seq for participant 102, timepoint w4, replicate 1

description: Library name: Sample_2_257


title: Viral IgG PhIP-Seq bead control S156, run IgG Vir YL13

description: Library name: Sample_2_256


title: Viral IgG PhIP-Seq bead control S155, run IgG Vir YL13

description: Library name: Sample_2_255


title: Viral IgG PhIP-Seq for participant 102, timepoint w0, replicate 1

description: Library name: Sample_2_254


title: Viral IgG PhIP-Seq for participant 101, timepoint w36, replicate 1

description: Library name: Sample_2_252


title: Viral IgG PhIP-Seq for participant 101, timepoint Post, replicate 1

description: Library name: Sample_2_251


title: Viral IgG PhIP-Seq for participant 101, timepoint w4, replicate 1

description: Library name: Sample_2_247


title: Viral IgG PhIP-Seq for participant 102, timepoint Pre, replicate 1

description: Library name: Sample_2_253


title: Viral IgG PhIP-Seq for participant 101, timepoint w20, replicate 1

description: Library name: Sample_2_250


title: Viral IgG PhIP-Seq for participant 101, timepoint Pre, replicate 1

description: Library name: Sample_2_245


title: Viral IgG PhIP-Seq for participant 83, timepoint Pre, replicate 1

description: Library name: Sample_2_249


title: Viral IgG PhIP-Seq for participant 101, timepoint w0, replicate 1

description: Library name: Sample_2_246


title: Viral IgG PhIP-Seq for participant 101, timepoint w12, replicate 1

description: Library name: Sample_2_248


title: Viral IgG PhIP-Seq for participant 100, timepoint w36, replicate 1

description: Library name: Sample_2_244


title: Viral IgG PhIP-Seq for participant 100, timepoint w20, replicate 1

description: Library name: Sample_2_242


title: Viral IgG PhIP-Seq for participant 100, timepoint w12, replicate 1

description: Library name: Sample_2_241


title: Viral IgG PhIP-Seq for participant 100, timepoint Post, replicate 1

description: Library name: Sample_2_243


title: Viral IgG PhIP-Seq for participant 100, timepoint w4, replicate 1

description: Library name: Sample_2_240


title: Viral IgG PhIP-Seq for participant 100, timepoint w0, replicate 1

description: Library name: Sample_2_239


title: Viral IgG PhIP-Seq for participant 82, timepoint w36, replicate 1

description: Library name: Sample_2_238


title: Viral IgG PhIP-Seq for participant 105, timepoint Pre, replicate 2

description: Library name: Sample_2_470


title: Viral IgA PhIP-Seq for participant 107, timepoint w36, replicate 2

description: Library name: Sample_3_521


title: Viral IgG PhIP-Seq for participant 100, timepoint Pre, replicate 1

description: Library name: Sample_2_237


title: Viral IgG PhIP-Seq for participant 99, timepoint w36, replicate 1

description: Library name: Sample_2_236


title: Viral IgG PhIP-Seq for participant 99, timepoint w4, replicate 1

description: Library name: Sample_2_232


title: Viral IgG PhIP-Seq for participant 99, timepoint w12, replicate 1

description: Library name: Sample_2_233


title: Viral IgG PhIP-Seq for participant 99, timepoint w20, replicate 1

description: Library name: Sample_2_234


title: Viral IgG PhIP-Seq for participant 99, timepoint Pre, replicate 1

description: Library name: Sample_2_230


title: Viral IgG PhIP-Seq for participant 98, timepoint w36, replicate 1

description: Library name: Sample_2_229


title: Viral IgG PhIP-Seq for participant 99, timepoint Post, replicate 1

description: Library name: Sample_2_235


title: Viral IgG PhIP-Seq for participant 98, timepoint Post, replicate 1

description: Library name: Sample_2_228


title: Viral IgG PhIP-Seq for participant 82, timepoint Post, replicate 1

description: Library name: Sample_2_227


title: Viral IgG PhIP-Seq for participant 98, timepoint w20, replicate 1

description: Library name: Sample_2_226


title: Viral IgG PhIP-Seq for participant 98, timepoint w4, replicate 1

description: Library name: Sample_2_224


title: Viral IgG PhIP-Seq for participant 98, timepoint w0, replicate 1

description: Library name: Sample_2_223


title: Viral IgG PhIP-Seq for participant 97, timepoint w36, replicate 1

description: Library name: Sample_2_221


title: Viral IgG PhIP-Seq for participant 97, timepoint Post, replicate 1

description: Library name: Sample_2_220


title: Viral IgG PhIP-Seq for participant 97, timepoint w12, replicate 1

description: Library name: Sample_2_218


title: Viral IgG PhIP-Seq for participant 97, timepoint w0, replicate 1

description: Library name: Sample_2_215


title: Viral IgG PhIP-Seq for participant 82, timepoint w20, replicate 1

description: Library name: Sample_2_216


title: Viral IgG PhIP-Seq for participant 97, timepoint Pre, replicate 1

description: Library name: Sample_2_214


title: Viral IgG PhIP-Seq for participant 96, timepoint w36, replicate 1

description: Library name: Sample_2_213


title: Viral IgG PhIP-Seq for participant 97, timepoint w20, replicate 1

description: Library name: Sample_2_219


title: Viral IgG PhIP-Seq for participant 96, timepoint Post, replicate 1

description: Library name: Sample_2_212


title: Viral IgG PhIP-Seq for participant 96, timepoint w20, replicate 1

description: Library name: Sample_2_211


title: Viral IgG PhIP-Seq for participant 96, timepoint w12, replicate 1

description: Library name: Sample_2_210


title: Viral IgG PhIP-Seq for participant 96, timepoint w4, replicate 1

description: Library name: Sample_2_209


title: Viral IgG PhIP-Seq for participant 96, timepoint Pre, replicate 1

description: Library name: Sample_2_207


title: Viral IgA PhIP-Seq for participant 109, timepoint w12, replicate 2

description: Library name: Sample_3_526


title: Viral IgG PhIP-Seq for participant 95, timepoint w36, replicate 1

description: Library name: Sample_2_206


title: Viral IgG PhIP-Seq for participant 82, timepoint w12, replicate 1

description: Library name: Sample_2_205


title: Viral IgG PhIP-Seq for participant 95, timepoint w20, replicate 1

description: Library name: Sample_2_203


title: Viral IgG PhIP-Seq for participant 95, timepoint w12, replicate 1

description: Library name: Sample_2_202


title: Viral IgA PhIP-Seq for participant 107, timepoint w12, replicate 2

description: Library name: Sample_3_518


title: Viral IgG PhIP-Seq for participant 94, timepoint Post, replicate 1

description: Library name: Sample_2_197


title: Viral IgG PhIP-Seq for participant 94, timepoint w20, replicate 1

description: Library name: Sample_2_196


title: Viral IgG PhIP-Seq for participant 82, timepoint w4, replicate 1

description: Library name: Sample_2_194


title: Viral IgG PhIP-Seq for participant 68, timepoint w4, replicate 1

description: Library name: Sample_2_192

value: IgG Vir YL10


title: Viral IgG PhIP-Seq bead control S96, run IgG Vir YL10

description: Library name: Sample_2_189


title: Viral IgG PhIP-Seq bead control S95, run IgG Vir YL10

description: Library name: Sample_2_188


title: Viral IgG PhIP-Seq for participant 67, timepoint w36, replicate 1

description: Library name: Sample_2_186


title: Viral IgG PhIP-Seq for participant 67, timepoint Post, replicate 1

description: Library name: Sample_2_185


title: Viral IgG PhIP-Seq for participant 67, timepoint w20, replicate 1

description: Library name: Sample_2_184


title: Viral IgG PhIP-Seq for participant 56, timepoint w0, replicate 1

description: Library name: Sample_2_182


title: Viral IgG PhIP-Seq for participant 67, timepoint w4, replicate 1

description: Library name: Sample_2_181


title: Viral IgG PhIP-Seq for participant 67, timepoint w0, replicate 1

description: Library name: Sample_2_180


title: Viral IgG PhIP-Seq for participant 67, timepoint Pre, replicate 1

description: Library name: Sample_2_179


title: Viral IgG PhIP-Seq for participant 66, timepoint w36, replicate 1

description: Library name: Sample_2_178


title: Viral IgG PhIP-Seq for participant 66, timepoint Post, replicate 1

description: Library name: Sample_2_177


title: Viral IgG PhIP-Seq for participant 66, timepoint w20, replicate 1

description: Library name: Sample_2_176


title: Viral IgG PhIP-Seq for participant 66, timepoint w12, replicate 1

description: Library name: Sample_2_175


title: Viral IgG PhIP-Seq for participant 66, timepoint w0, replicate 1

description: Library name: Sample_2_173


title: Viral IgG PhIP-Seq for participant 66, timepoint Pre, replicate 1

description: Library name: Sample_2_172


title: Viral IgG PhIP-Seq for participant 56, timepoint Pre, replicate 1

description: Library name: Sample_2_171


title: Viral IgG PhIP-Seq for participant 65, timepoint w36, replicate 1

description: Library name: Sample_2_170


title: Viral IgG PhIP-Seq for participant 65, timepoint Post, replicate 1

description: Library name: Sample_2_169


title: Viral IgG PhIP-Seq for participant 65, timepoint w20, replicate 1

description: Library name: Sample_2_168


title: Viral IgG PhIP-Seq for participant 65, timepoint w12, replicate 1

description: Library name: Sample_2_167


title: Viral IgG PhIP-Seq for participant 65, timepoint w4, replicate 1

description: Library name: Sample_2_166


title: Viral IgG PhIP-Seq for participant 65, timepoint Pre, replicate 1

description: Library name: Sample_2_164


title: Viral IgG PhIP-Seq for participant 64, timepoint Post, replicate 1

description: Library name: Sample_2_162


title: Viral IgG PhIP-Seq for participant 65, timepoint w0, replicate 1

description: Library name: Sample_2_165


title: Viral IgG PhIP-Seq for participant 64, timepoint w36, replicate 1

description: Library name: Sample_2_163


title: Viral IgG PhIP-Seq for participant 55, timepoint w36, replicate 1

description: Library name: Sample_2_160


title: Viral IgG PhIP-Seq for participant 99, timepoint w0, replicate 1

description: Library name: Sample_2_231


title: Viral IgG PhIP-Seq for participant 64, timepoint w12, replicate 1

description: Library name: Sample_2_159


title: Viral IgG PhIP-Seq for participant 98, timepoint Pre, replicate 1

description: Library name: Sample_2_222


title: Viral IgG PhIP-Seq for participant 64, timepoint w4, replicate 1

description: Library name: Sample_2_158


title: Viral IgG PhIP-Seq for participant 97, timepoint w4, replicate 1

description: Library name: Sample_2_217


title: Viral IgG PhIP-Seq for participant 64, timepoint w0, replicate 1

description: Library name: Sample_2_157


title: Viral IgG PhIP-Seq for participant 96, timepoint w0, replicate 1

description: Library name: Sample_2_208


title: Viral IgG PhIP-Seq for participant 64, timepoint w20, replicate 1

description: Library name: Sample_2_161


title: Viral IgG PhIP-Seq for participant 64, timepoint Pre, replicate 1

description: Library name: Sample_2_156


title: Viral IgG PhIP-Seq for participant 63, timepoint w36, replicate 1

description: Library name: Sample_2_155


title: Viral IgG PhIP-Seq for participant 63, timepoint Post, replicate 1

description: Library name: Sample_2_154


title: Viral IgG PhIP-Seq for participant 95, timepoint Post, replicate 1

description: Library name: Sample_2_204


title: Viral IgG PhIP-Seq for participant 63, timepoint w20, replicate 1

description: Library name: Sample_2_153


title: Viral IgG PhIP-Seq for participant 63, timepoint w12, replicate 1

description: Library name: Sample_2_152


title: Viral IgG PhIP-Seq for participant 94, timepoint w12, replicate 1

description: Library name: Sample_2_195


title: Viral IgG PhIP-Seq for participant 94, timepoint w36, replicate 1

description: Library name: Sample_2_198


title: Viral IgG PhIP-Seq for participant 95, timepoint w4, replicate 1

description: Library name: Sample_2_201


title: Viral IgG PhIP-Seq for participant 63, timepoint w4, replicate 1

description: Library name: Sample_2_151


title: Viral IgG PhIP-Seq for participant 95, timepoint w0, replicate 1

description: Library name: Sample_2_200


title: Viral IgG PhIP-Seq for participant 95, timepoint Pre, replicate 1

description: Library name: Sample_2_199


title: Viral IgG PhIP-Seq bead control S60, run IgG Vir YL10

description: Library name: Sample_2_150


title: Viral IgG PhIP-Seq for participant 55, timepoint Post, replicate 1

description: Library name: Sample_2_149


title: Viral IgG PhIP-Seq for participant 81, timepoint Pre, replicate 1

description: Library name: Sample_2_193


title: Viral IgG PhIP-Seq bead control S59, run IgG Vir YL10

description: Library name: Sample_2_148


title: Viral IgG PhIP-Seq for participant 63, timepoint w0, replicate 1

description: Library name: Sample_2_147


title: Viral IgG PhIP-Seq for participant 63, timepoint Pre, replicate 1

description: Library name: Sample_2_146


title: Viral IgG PhIP-Seq for participant 62, timepoint w36, replicate 1

description: Library name: Sample_2_145


title: Viral IgG PhIP-Seq for participant 62, timepoint Post, replicate 1

description: Library name: Sample_2_144


title: Viral IgG PhIP-Seq for participant 68, timepoint Pre, replicate 1

description: Library name: Sample_2_190


title: Viral IgG PhIP-Seq bead control S94, run IgG Vir YL10

description: Library name: Sample_2_187


title: Viral IgG PhIP-Seq for participant 62, timepoint w12, replicate 1

description: Library name: Sample_2_142


title: Viral IgG PhIP-Seq for participant 68, timepoint w0, replicate 1

description: Library name: Sample_2_191


title: Viral IgG PhIP-Seq for participant 62, timepoint w4, replicate 1

description: Library name: Sample_2_141


title: Viral IgG PhIP-Seq for participant 62, timepoint w0, replicate 1

description: Library name: Sample_2_140


title: Viral IgG PhIP-Seq for participant 61, timepoint w36, replicate 1

description: Library name: Sample_2_137


title: Viral IgG PhIP-Seq for participant 55, timepoint w20, replicate 1

description: Library name: Sample_2_138


title: Viral IgG PhIP-Seq for participant 62, timepoint Pre, replicate 1

description: Library name: Sample_2_139


title: Viral IgG PhIP-Seq for participant 61, timepoint w20, replicate 1

description: Library name: Sample_2_135


title: Viral IgG PhIP-Seq for participant 61, timepoint w0, replicate 1

description: Library name: Sample_2_132


title: Viral IgG PhIP-Seq for participant 61, timepoint Pre, replicate 1

description: Library name: Sample_2_131


title: Viral IgG PhIP-Seq for participant 61, timepoint w4, replicate 1

description: Library name: Sample_2_133


title: Viral IgG PhIP-Seq for participant 60, timepoint w36, replicate 1

description: Library name: Sample_2_130


title: Viral IgG PhIP-Seq for participant 60, timepoint Post, replicate 1

description: Library name: Sample_2_129


title: Viral IgG PhIP-Seq for participant 60, timepoint w20, replicate 1

description: Library name: Sample_2_128


title: Viral IgG PhIP-Seq for participant 55, timepoint w12, replicate 1

description: Library name: Sample_2_127


title: Viral IgG PhIP-Seq for participant 60, timepoint w0, replicate 1

description: Library name: Sample_2_124


title: Viral IgG PhIP-Seq for participant 60, timepoint Pre, replicate 1

description: Library name: Sample_2_123


title: Viral IgG PhIP-Seq for participant 59, timepoint Post, replicate 1

description: Library name: Sample_2_121


title: Viral IgG PhIP-Seq for participant 59, timepoint w20, replicate 1

description: Library name: Sample_2_120


title: Viral IgG PhIP-Seq for participant 59, timepoint w36, replicate 1

description: Library name: Sample_2_122


title: Viral IgG PhIP-Seq for participant 59, timepoint w12, replicate 1

description: Library name: Sample_2_119


title: Viral IgG PhIP-Seq for participant 59, timepoint w0, replicate 1

description: Library name: Sample_2_117


title: Viral IgG PhIP-Seq for participant 59, timepoint w4, replicate 1

description: Library name: Sample_2_118


title: Viral IgG PhIP-Seq for participant 58, timepoint w36, replicate 1

description: Library name: Sample_2_114


title: Viral IgG PhIP-Seq for participant 55, timepoint w4, replicate 1

description: Library name: Sample_2_116


title: Viral IgG PhIP-Seq for participant 58, timepoint Post, replicate 1

description: Library name: Sample_2_113


title: Viral IgG PhIP-Seq for participant 58, timepoint w12, replicate 1

description: Library name: Sample_2_111


title: Viral IgG PhIP-Seq for participant 58, timepoint w4, replicate 1

description: Library name: Sample_2_110


title: Viral IgG PhIP-Seq for participant 58, timepoint w0, replicate 1

description: Library name: Sample_2_109


title: Viral IgG PhIP-Seq for participant 58, timepoint Pre, replicate 1

description: Library name: Sample_2_108


title: Viral IgG PhIP-Seq for participant 57, timepoint w36, replicate 1

description: Library name: Sample_2_107


title: Viral IgG PhIP-Seq for participant 57, timepoint Post, replicate 1

description: Library name: Sample_2_106


title: Viral IgG PhIP-Seq bead control S191, run IgG Vir YL10

description: Library name: Sample_2_103


title: Viral IgG PhIP-Seq bead control S192, run IgG Vir YL10

description: Library name: Sample_2_104


title: Viral IgG PhIP-Seq for participant 57, timepoint w20, replicate 1

description: Library name: Sample_2_101


title: Viral IgG PhIP-Seq for participant 80, timepoint w36, replicate 1

description: Library name: Sample_2_100


title: Viral IgG PhIP-Seq for participant 80, timepoint Post, replicate 1

description: Library name: Sample_2_99


title: Viral IgG PhIP-Seq for participant 80, timepoint w12, replicate 1

description: Library name: Sample_2_97


title: Viral IgG PhIP-Seq for participant 80, timepoint w4, replicate 1

description: Library name: Sample_2_96


title: Viral IgG PhIP-Seq for participant 80, timepoint w0, replicate 1

description: Library name: Sample_2_95


title: Viral IgG PhIP-Seq for participant 80, timepoint Pre, replicate 1

description: Library name: Sample_2_94


title: Viral IgG PhIP-Seq for participant 79, timepoint Post, replicate 1

description: Library name: Sample_2_92


title: Viral IgG PhIP-Seq for participant 79, timepoint w36, replicate 1

description: Library name: Sample_2_93


title: Viral IgG PhIP-Seq for participant 79, timepoint w20, replicate 1

description: Library name: Sample_2_91


title: Viral IgG PhIP-Seq for participant 57, timepoint w12, replicate 1

description: Library name: Sample_2_90


title: Viral IgG PhIP-Seq for participant 79, timepoint w12, replicate 1

description: Library name: Sample_2_89


title: Viral IgG PhIP-Seq for participant 79, timepoint w4, replicate 1

description: Library name: Sample_2_88


title: Viral IgG PhIP-Seq for participant 79, timepoint w0, replicate 1

description: Library name: Sample_2_87


title: Viral IgG PhIP-Seq for participant 79, timepoint Pre, replicate 1

description: Library name: Sample_2_86


title: Viral IgG PhIP-Seq for participant 78, timepoint Post, replicate 1

description: Library name: Sample_2_84


title: Viral IgG PhIP-Seq for participant 78, timepoint w36, replicate 1

description: Library name: Sample_2_85


title: Viral IgG PhIP-Seq for participant 78, timepoint w12, replicate 1

description: Library name: Sample_2_82


title: Viral IgG PhIP-Seq for participant 78, timepoint w4, replicate 1

description: Library name: Sample_2_81


title: Viral IgG PhIP-Seq for participant 78, timepoint w0, replicate 1

description: Library name: Sample_2_80


title: Viral IgG PhIP-Seq for participant 57, timepoint w4, replicate 1

description: Library name: Sample_2_79


title: Viral IgG PhIP-Seq for participant 77, timepoint w36, replicate 1

description: Library name: Sample_2_77


title: Viral IgG PhIP-Seq for participant 78, timepoint Pre, replicate 1

description: Library name: Sample_2_78


title: Viral IgG PhIP-Seq for participant 77, timepoint w20, replicate 1

description: Library name: Sample_2_75


title: Viral IgG PhIP-Seq for participant 77, timepoint w4, replicate 1

description: Library name: Sample_2_73


title: Viral IgG PhIP-Seq for participant 77, timepoint w12, replicate 1

description: Library name: Sample_2_74


title: Viral IgG PhIP-Seq for participant 77, timepoint w0, replicate 1

description: Library name: Sample_2_72


title: Viral IgG PhIP-Seq for participant 77, timepoint Pre, replicate 1

description: Library name: Sample_2_71


title: Viral IgG PhIP-Seq for participant 76, timepoint Post, replicate 1

description: Library name: Sample_2_69


title: Viral IgG PhIP-Seq for participant 57, timepoint w0, replicate 1

description: Library name: Sample_2_68


title: Viral IgG PhIP-Seq for participant 76, timepoint w12, replicate 1

description: Library name: Sample_2_66


title: Viral IgG PhIP-Seq bead control S156, run IgG Vir YL10

description: Library name: Sample_2_64


title: Viral IgG PhIP-Seq for participant 76, timepoint w4, replicate 1

description: Library name: Sample_2_65


title: Viral IgG PhIP-Seq bead control S155, run IgG Vir YL10

description: Library name: Sample_2_63


title: Viral IgG PhIP-Seq for participant 76, timepoint Pre, replicate 1

description: Library name: Sample_2_61


title: Viral IgG PhIP-Seq for participant 76, timepoint w20, replicate 1

description: Library name: Sample_2_67


title: Viral IgG PhIP-Seq for participant 75, timepoint w36, replicate 1

description: Library name: Sample_2_60


title: Viral IgG PhIP-Seq for participant 78, timepoint w20, replicate 1

description: Library name: Sample_2_83


title: Viral IgG PhIP-Seq for participant 75, timepoint Post, replicate 1

description: Library name: Sample_2_59


title: Viral IgG PhIP-Seq for participant 75, timepoint w20, replicate 1

description: Library name: Sample_2_58


title: Viral IgG PhIP-Seq for participant 57, timepoint Pre, replicate 1

description: Library name: Sample_2_57


title: Viral IgG PhIP-Seq for participant 75, timepoint w12, replicate 1

description: Library name: Sample_2_56


title: Viral IgG PhIP-Seq for participant 77, timepoint Post, replicate 1

description: Library name: Sample_2_76


title: Viral IgG PhIP-Seq for participant 75, timepoint w4, replicate 1

description: Library name: Sample_2_55


title: Viral IgG PhIP-Seq for participant 75, timepoint w0, replicate 1

description: Library name: Sample_2_54


title: Viral IgG PhIP-Seq for participant 75, timepoint Pre, replicate 1

description: Library name: Sample_2_53


title: Viral IgG PhIP-Seq for participant 74, timepoint w36, replicate 1

description: Library name: Sample_2_52


title: Viral IgG PhIP-Seq for participant 74, timepoint w20, replicate 1

description: Library name: Sample_2_50


title: Viral IgG PhIP-Seq for participant 76, timepoint w36, replicate 1

description: Library name: Sample_2_70


title: Viral IgG PhIP-Seq for participant 74, timepoint Post, replicate 1

description: Library name: Sample_2_51


title: Viral IgG PhIP-Seq for participant 74, timepoint w12, replicate 1

description: Library name: Sample_2_49


title: Viral IgG PhIP-Seq for participant 74, timepoint w4, replicate 1

description: Library name: Sample_2_48


title: Viral IgG PhIP-Seq for participant 74, timepoint w0, replicate 1

description: Library name: Sample_2_47


title: Viral IgG PhIP-Seq for participant 56, timepoint w36, replicate 1

description: Library name: Sample_2_46


title: Viral IgG PhIP-Seq for participant 74, timepoint Pre, replicate 1

description: Library name: Sample_2_45


title: Viral IgG PhIP-Seq for participant 73, timepoint w36, replicate 1

description: Library name: Sample_2_44


title: Viral IgG PhIP-Seq for participant 73, timepoint Post, replicate 1

description: Library name: Sample_2_43


title: Viral IgG PhIP-Seq for participant 73, timepoint w20, replicate 1

description: Library name: Sample_2_42


title: Viral IgG PhIP-Seq for participant 73, timepoint w12, replicate 1

description: Library name: Sample_2_41


title: Viral IgG PhIP-Seq for participant 62, timepoint w20, replicate 1

description: Library name: Sample_2_143


title: Viral IgG PhIP-Seq for participant 73, timepoint w0, replicate 1

description: Library name: Sample_2_39


title: Viral IgG PhIP-Seq for participant 73, timepoint w4, replicate 1

description: Library name: Sample_2_40


title: Viral IgG PhIP-Seq for participant 73, timepoint Pre, replicate 1

description: Library name: Sample_2_38


title: Viral IgG PhIP-Seq for participant 76, timepoint w0, replicate 1

description: Library name: Sample_2_62


title: Viral IgG PhIP-Seq for participant 61, timepoint Post, replicate 1

description: Library name: Sample_2_136


title: Viral IgG PhIP-Seq for participant 72, timepoint w36, replicate 1

description: Library name: Sample_2_37


title: Viral IgG PhIP-Seq for participant 72, timepoint Post, replicate 1

description: Library name: Sample_2_36


title: Viral IgG PhIP-Seq for participant 61, timepoint w12, replicate 1

description: Library name: Sample_2_134


title: Viral IgG PhIP-Seq for participant 90, timepoint w0, replicate 2

description: Library name: Sample_2_541

value: IgG Vir YL14


title: Viral IgG PhIP-Seq for participant 56, timepoint Post, replicate 1

description: Library name: Sample_2_35


title: Viral IgG PhIP-Seq for participant 60, timepoint w12, replicate 1

description: Library name: Sample_2_126


title: Viral IgG PhIP-Seq for participant 72, timepoint w20, replicate 1

description: Library name: Sample_2_34


title: Viral IgG PhIP-Seq for participant 91, timepoint w12, replicate 2

description: Library name: Sample_2_551


title: Viral IgG PhIP-Seq for participant 72, timepoint w12, replicate 1

description: Library name: Sample_2_33


title: Viral IgG PhIP-Seq for participant 72, timepoint w4, replicate 1

description: Library name: Sample_2_32


title: Viral IgG PhIP-Seq for participant 60, timepoint w4, replicate 1

description: Library name: Sample_2_125


title: Viral IgG PhIP-Seq for participant 72, timepoint w0, replicate 1

description: Library name: Sample_2_31


title: Viral IgG PhIP-Seq for participant 71, timepoint Post, replicate 1

description: Library name: Sample_2_28


title: Viral IgG PhIP-Seq for participant 71, timepoint w36, replicate 1

description: Library name: Sample_2_29


title: Viral IgG PhIP-Seq for participant 71, timepoint w12, replicate 1

description: Library name: Sample_2_26


title: Viral IgG PhIP-Seq for participant 71, timepoint w4, replicate 1

description: Library name: Sample_2_25


title: Viral IgG PhIP-Seq for participant 71, timepoint w0, replicate 1

description: Library name: Sample_2_23


title: Viral IgG PhIP-Seq for participant 71, timepoint Pre, replicate 1

description: Library name: Sample_2_22


title: Viral IgG PhIP-Seq for participant 70, timepoint w36, replicate 1

description: Library name: Sample_2_21


title: Viral IgG PhIP-Seq for participant 56, timepoint w20, replicate 1

description: Library name: Sample_2_24


title: Viral IgG PhIP-Seq for participant 70, timepoint Post, replicate 1

description: Library name: Sample_2_20


title: Viral IgG PhIP-Seq for participant 70, timepoint w12, replicate 1

description: Library name: Sample_2_18


title: Viral IgG PhIP-Seq for participant 70, timepoint w4, replicate 1

description: Library name: Sample_2_17


title: Viral IgG PhIP-Seq for participant 70, timepoint w0, replicate 1

description: Library name: Sample_2_16


title: Viral IgG PhIP-Seq for participant 70, timepoint Pre, replicate 1

description: Library name: Sample_2_15


title: Viral IgG PhIP-Seq for participant 69, timepoint w36, replicate 1

description: Library name: Sample_2_14


title: Viral IgG PhIP-Seq for participant 69, timepoint Post, replicate 1

description: Library name: Sample_2_12


title: Viral IgG PhIP-Seq for participant 56, timepoint w12, replicate 1

description: Library name: Sample_2_13


title: Viral IgG PhIP-Seq for participant 69, timepoint w4, replicate 1

description: Library name: Sample_2_9


title: Viral IgG PhIP-Seq for participant 69, timepoint w12, replicate 1

description: Library name: Sample_2_10


title: Viral IgG PhIP-Seq for participant 69, timepoint Pre, replicate 1

description: Library name: Sample_2_7


title: Viral IgG PhIP-Seq for participant 68, timepoint w36, replicate 1

description: Library name: Sample_2_6


title: Viral IgG PhIP-Seq for participant 68, timepoint Post, replicate 1

description: Library name: Sample_2_5


title: Viral IgG PhIP-Seq for participant 68, timepoint w20, replicate 1

description: Library name: Sample_2_4


title: Viral IgG PhIP-Seq for participant 68, timepoint w12, replicate 1

description: Library name: Sample_2_3


title: Viral IgG PhIP-Seq for participant 55, timepoint Pre, replicate 1

description: Library name: Sample_2_1


title: Viral IgG PhIP-Seq for participant 56, timepoint w4, replicate 1

description: Library name: Sample_2_2


title: Viral IgG PhIP-Seq for participant 27, timepoint w0, replicate 1

description: Library name: Sample_1_913

value: IgG Vir YL1


title: Viral IgG PhIP-Seq for participant 27, timepoint Pre, replicate 1

description: Library name: Sample_1_912


title: Viral IgG PhIP-Seq for participant 26, timepoint w36, replicate 1

description: Library name: Sample_1_911


title: Viral IgG PhIP-Seq for participant 26, timepoint w20, replicate 1

description: Library name: Sample_1_908


title: Viral IgG PhIP-Seq for participant 10, timepoint Pre, replicate 1

description: Library name: Sample_1_909

value: loss


title: Viral IgG PhIP-Seq for participant 26, timepoint Post, replicate 1

description: Library name: Sample_1_910


title: Viral IgG PhIP-Seq for participant 26, timepoint w12, replicate 1

description: Library name: Sample_1_907


title: Viral IgG PhIP-Seq for participant 26, timepoint w4, replicate 1

description: Library name: Sample_1_906


title: Viral IgG PhIP-Seq for participant 26, timepoint w0, replicate 1

description: Library name: Sample_1_905


title: Viral IgG PhIP-Seq for participant 25, timepoint w36, replicate 1

description: Library name: Sample_1_903


title: Viral IgG PhIP-Seq for participant 26, timepoint Pre, replicate 1

description: Library name: Sample_1_904


title: Viral IgG PhIP-Seq for participant 25, timepoint w12, replicate 1

description: Library name: Sample_1_900


title: Viral IgG PhIP-Seq for participant 25, timepoint w4, replicate 1

description: Library name: Sample_1_899