title: NimbleGen Zobellia galactanivorans DsijT 4*72k_array
status: Public on Nov 01 2017
contact.city: Roscoff
contact.first: Francois
contact.last: Thomas
contact.email: fthomas@sb-roscoff.fr
contact.address: Place George Teissier
contact.department: UMR8227, CNRS-UPMC
contact.country: France
contact.institute: Station Biologique de Roscoff
organism: Zobellia galactanivorans
description: The whole genome of Z. galactanivorans (4482 CDS + 2595 intergenic regions) was covered by 72,000 oligonucleotides with a 60-bp average size. In total, the pangenomic microarray comprised 52,389 and 19,345 probes targeting genic and intergenic regions, respectively. It was impossible to design probes for 256 coding regions and 1,556 non-coding regions, either because sequences were too similar to ensure specificity or the target regions were too short. Overall, the microarray covers 95% of the genes of Z. galactanivorans, with 11.6 probes per gene on average.
  The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf, .pos and .ncd files are linked below as supplementary files.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.