title: Agilent-012713 Yeast Whole Genome ChIP-on-chip Microarray (G4486A)
status: Public on May 09 2006
contact.city: Palo Alto
contact.last: Agilent Technologies
contact.email: cag_sales-na@agilent.com
contact.state: CA
contact.country: USA
contact.web_link: http://www.agilent.com
contact.institute: Agilent Technologies
contact.phone: 877-424-4536
organism: Saccharomyces cerevisiae
description: 
  The Yeast Whole Genome ChIP-on-chip microarray is a high-resolution, high performance 60-mer oligonucleotide that allows the location analysis of DNA binding proteins over 85% (the non-repetitive portion) of 12MB of the yeast genome on a single chip. This chip offers genome-wide coverage and  consists of 41,441 oligos (60mer); 14,256 from intergenic pathway, 27,175 from ORF pathway with an average prob spacing of approximately every 266 bp.  Arrays with this part number have a design ID 12713.
  
  Arrays of this design have barcodes that begin with 16012713 or 2512713.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/