title: GNF1M
status: Public on Mar 19 2004
contact.city: San Diego
contact.first: John
contact.last: Walker
contact.email: jwalkergnf@gmail.com, john.walker@novartis.com
contact.state: CA
contact.address: 10675 John Jay Hopkins Dr
contact.country: USA
contact.institute: NIBR
organism: Mus musculus
description: GNF1M
  We identified a non-redundant set of target sequences for the mouse using the following sources: RefSeq (12,029 sequences), Celera (29,331 sequences), and RIKEN (46,299 sequences).  First, all sequences were RepeatMasked to remove repetitive elements.  Next, sequence identity between individual sequences was established using pairwise BLAT or BLAST and sim4.  The results from single-linkage clustering were further triaged to produce a final target set of 36,182 targets with the highest degree of confidence of computational prediction (biasing toward sequences containing Interpro domains and away from non-coding RNAs).  The final target sets were submitted to the Affymetrix's chip design pipeline for fabrication of the arrays. For data submission here, only probe sets that mapped to public sequences are given.