title: Agilent-022980 Human Gdi1-dupl-jvdw 45k array
status: Public on Aug 17 2010
contact.city: Leuven
contact.first: Rekin's
contact.last: Janky
contact.email: Nucleomics.Bioinformatics@vib.be
contact.address: Herestraat 49 Box 816
contact.department: Nucleomics Core
contact.country: Belgium
contact.institute: VIB
organism: Homo sapiens
description: Arrays of this design have barcodes that begin with 16022980 or 2522980.
  Orientation: Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  The ID column represents the Agilent Feature Extraction feature number.
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
  A custom designed 4x44k Xq28 region-specific oligo-array (Agilent Technologies) that covers the repeat-masked region 152.70 Mb to 153.65 Mb at tiling resolution.
  
  Platform data table annotations based on genome build NCBI 36.1 (Hg18).
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/