title: [Clariom_D_Human] Affymetrix Human Clariom D Assay (custom GENECODEG annotation)
status: Public on Feb 07 2024
contact.city: MILAN
contact.first: Luca
contact.last: Agnelli
contact.email: luca.agnelli@istitutotumori.mi.it, luca.agnelli@gmail.com
contact.address: Venezian 1
contact.department: Department of Advanced Diagnostics
contact.country: Italy
contact.institute: IRCCS Istituto Nazionale dei Tumori
contact.phone: +390223903581
organism: Homo sapiens
description: A custom annotation pipeline was applied that combined GENCODE v25 (Ensembl v87) annotations with the CDF (Chip Definition File) version 24 for gene annotations freely available at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/24.0.0/gencodeg.asp, in order to withdraw probes that map to regions where ambiguous detection due to transcript overlap might occur, as described in Todoerti K et al,  Methods Mol Biol. 2021;2348:45-53.
manufacture_protocol: See manufacturer's website