title: NimbleGen Atlantic Cod Oligonucleotide 135k Array Version 1 [100610_GM_FY_EXP] (gene-level)
status: Public on Mar 17 2015
contact.city: Bergen
contact.first: Kai
contact.middle: Kristoffer
contact.last: Lie
contact.email: kli@hi.no
contact.state: Hordaland
contact.address: Pobox 2029 Nordnes
contact.department: Feed Safety
contact.country: Norway
contact.institute: Institute of Marine research
organism: Gadus morhua
description: NimbleGen design name: 100610_GM_FY_EXP
  NimbleGen design ID: 531893
  Native array description file: 100610_GM_FY_EXP.ndf
  Native array description file: 100610_GM_FY_EXP.ngd
  44k cDNAs were used (26k assembled EST contigs and 18 singletons from the cod genome sequencing consortium; see The genome sequence of Atlantic cod reveals a unique immune system Starr et al., 2011; Nature 477:207 [PMID 21832995]). Three 60mer probes were prepared for each cDNA sequence, 125826 cod probes in total.  The array contains 137604 features, including  11779 Nimblegen control probes.
  The supplementary file 'cDNA_seqs.txt' contains all cDNA sequences used in the design of the probes.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.