title: NimbleGen Magnetospirillum magneticum str. AMB-1 - 4x72k custom expression array
status: Public on Feb 17 2012
contact.city: Berkeley
contact.first: Arash
contact.last: Komeili
contact.email: komeili@berkeley.edu
contact.state: CA
contact.address: 111 Koshland Hall #3102
contact.department: Plant and Microbial Biology
contact.country: USA
contact.institute: UC Berkeley
contact.phone: 510-642-2140
organism: Paramagnetospirillum magneticum AMB-1
description: Custom 4x72,000 gene expression microarray.
  NimbleGen design name 090515_Mmag_SG_exp, NimbleGen design ID 21722. Each 72k expression design contains duplicate coverage of 4350 annotated genes (60mer probes, 7 unique probes per gene). In addition, design contains 7 60mer probes per 22 unannotated ORFs, genomic coordinates of each are listed in SEQ_ID (denoted as genomic region [LDx] _ gene start of region _ gene end of region _ genomic coordinate start _ genomic coordinate end). The microarray design also included tiling of the Magnetosome Island, from genomic coordinates 977403-1097027.  This region was covered by 8038 probes, 50 nt in length.
manufacture_protocol: See manufacturer's website at http://www.nimblegen.com/.