title: SFGF HEEBO Human Set v1.00
status: Public on Mar 01 2008
contact.city: Brussels
contact.first: Frederick
contact.last: Libert
contact.email: flibert@ulb.ac.be
contact.address: 808 route de Lennik
contact.department: IRIBHM
contact.country: Belgium
contact.institute: ULB
organism: Homo sapiens
description: Probes:
  Constitutive Exonic Probes (30,718): that will recognize all known transcripts of a gene.
  Alternatively Spliced / Skipped Exonic Probes (8,441): will recognize exons that are present in some, but not all transcripts of a gene.
  Non Coding RNA Probes (196): recogning non-protein coding transcripts (ribosomal RNAs, miRNAs).
  BCR / TCR Genic / Regional Probes (372): recognizing transcripts from genes that undergo somatic rearrangement.
  Other Probes (843): recognizing human mitochondrion derived DNA sequences.
  
  
  Controls:
  A total of 4,189 controls are included in the set, including
  Negative Controls (398 and 194 buffer only): Buffer only and 410 random sequences are positioned throughout the set to assist in determining background.
  Positive Controls (864): recognizing a small subset of human transcripts.
  Doped Controls (1,384): recognizing non-human sequences that can be spiked into RNA samples
manufacture_protocol: The Human Exonic Evidence Based Oligonucleotide (HEEBO) array was developed by a group of researchers from Stanford University with collaborators from UCSF, Rockefeller, Basel, and the Stowers Institute. The oligonucleotide set consists of 44,544 70mer probes that were designed using a transcriptome-based annotation of exonic structure for genomic loci.
  Tip configuration : 48 tip