title: NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100205_HG18_Promoter_MeDIP_HX1]
status: Public on Mar 20 2011
contact.city: Bethesda
contact.first: Lai
contact.last: Wei
contact.email: weil2@mail.nih.gov
contact.state: MD
contact.address: 10 Center Dr. Room 2B47
contact.country: USA
contact.institute: NIH/NEI/NCCAM
contact.phone: 3014961480
organism: Homo sapiens
description: Design ID: 11333
  Design name: 100205_HG18_Promoter_MeDIP_3
  Genome build: HG18, NCBI36
  
  HX1 - HG18 promoter design, mean probe spacing 99, median 100.  This design consists of:  1) Promoter regions, from 7250 bases upstream of each TSS to 3250 bases downstream;  2) miRNA genes, starting from 15kbp upstream of the mature gene product to its 3' end;  3) CpG islands;  4) ENCODE regions.  Probes were chosen from the hg18_tiling database.  Most probes were chosen at an int65win35max1.  Any region that resulted in no coverage from this selection was  re-selected at int10win90max10.
  
  Native array description file: 100205_HG18_Promoter_MeDIP_HX1.ndf
  Native array description file: 100205_HG18_Promoter_MeDIP_HX1.pos
manufacture_protocol: See manufacturer's website (www.nimblegen.com).