title: Agilent-026893 CTCFpedigreeArray3
status: Public on Aug 31 2011
contact.city: SEATTLE
contact.first: John
contact.middle: A
contact.last: Stamatoyannopoulos
contact.email: jstam@altius.org
contact.state: WA
contact.address: 2211 Elliott Avenue, 6th Floor
contact.department: Genome Sciences
contact.country: USA
contact.institute: Altius Institute / University of Washington
organism: Homo sapiens
description: This is an array for targeted resequencing of the 134 bp interval surrounding 46,568 CTCF binding sites in CEPH pedigree 1459. Coordinates are hg18.
  
  Tm-optimized
  
  Arrays of this design have barcodes that begin with 16026893 or 2526893.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/