title: ATH long intergenic non-coding RNA array v1 (Feature Number version)
status: Public on Aug 06 2011
contact.city: No.12 Zhongguancun South Street, Haidian
contact.first: Jun
contact.last: Liu
contact.email: liujun@caas.cn
contact.state: Beijing
contact.address: 1230 York Avenue
contact.department: Chinese Academy of Agricultural Sciences
contact.country: China
contact.institute: Institute of Crop Science
organism: Arabidopsis thaliana
description: ATH long intergenic non-coding RNA (lincRNA) v1 array  are designed based on Agilent 8x15K formatted microarray platform. Arabidopsis lincRNAs are identified by analysis of 200 tiling-array datasets using Reproducibility-based Tiling-array Analysis Strategy(RepTAS). Based on the reproducibility of detection, transcript size, probe capacity, base composition, GC content and EST evidence, we finally selected 4,652 lincRNAs with high confidence to design expression array. The final array consisted of probes for these 4,652 lincRNAs, 173 pri-miRNAs, 248 nature anti-sense RNA and 90 well-characterized protein-coding mRNAs. We desiged 3 probes for each transcript. Current annotation of ATH lincRNA v1 array is based on Arabidpisis genome annotation version TAIR9.
manufacture_protocol: See Agilent Technologies's web site at http://www.agilent.com/