title: GAAS Sweetpotato 72k v1.0
status: Public on Dec 30 2014
contact.city: Guangzhou
contact.first: zhangying
contact.last: wang
contact.email: wzhying@Hotmail.com
contact.state: Guangdong
contact.address: Jinying West 2nd Street 18#, Wushan Tianhe
contact.department: Crops Research Institute
contact.country: China
contact.institute: Guangdong Academy of Agricultural Sciences
organism: Ipomoea batatas
description: A total of 71,999 (32275×2 and 7449 ×1 ) in situ synthesized 60-mer oligonucleotide probes representing 39,724 sweetpotato genes were designed on the microarray.
  All the EST sequences used for this array designing were retrieved from NCBI GenBank and sweetpotato gene index. However, there is abundant redundancy in these EST sequences due to the submission by different researchers. In order to eliminate redundant sequences and improve the sequence quality, The EST sequences were reassembled by using the TIGR Gene Indices Clustering Tools (TGICL). These reassembled EST sequences used for this array designing still have not been deposited in GenBank or other public-database. So we have not a publicly-accessible accession number yet.
manufacture_protocol: In-situ synthesis using Roche NimbleGen’s Maskless Array Synthesizer (MAS) system.