title: Nimblegen T. atroviride, T. virens and T.reesei-1 385K array
status: Public on Mar 09 2018
contact.city: Villamayor
contact.first: Marta
contact.last: Montero-Barrientos
contact.email: marta.montero-barrientos@cenitss.es
contact.state: Salamanca
contact.address: Río Duero 12
contact.country: Spain
contact.institute: CENIT SUPPORT SYSTEMS
contact.phone: +34923049446
organism: Trichoderma virens
  Trichoderma reesei
  Trichoderma atroviride
description: Expression design for three species of Trichoderma (T. atroviride, T. virens, T. reesei). Transcript sequences obtained from JGI (http://genome.jgi-psf.org). 34142 initial transcripts, selected five 60mer probes per transcript for 34115 transcripts; 2 replicates on array, empty features filled with randomly generated probes of comparable length and G+C content.
  
  DESIGN_ID = 564671
  designname = 120110_Trichoderma_sp_RP_exp
  
  native array description file: 120110_Trichoderma_sp_RP_exp.ndf
  native array description file: 120110_Trichoderma_sp_RP_exp.ngd
  
  The GENE_INFO column contains accession numbers from JGI Trichoderma genomes;
  Trichoderma reesei
  http://genome.jgi.doe.gov/TrireRUTC30_1/TrireRUTC30_1.home.html
  Trichoderm. virens
  http://genome.jgi.doe.gov/TriviGv29_8_2/TriviGv29_8_2.home.html
  Trichoderma atroviride
  http://genome.jgi.doe.gov/Triat2/Triat2.home.html
manufacture_protocol: 120110_Trichoderma sp_RP_exp. The microarray was composed of 385,000 probes designed against the genomes of Trichoderma reesei (= Hypocrea jecorina), ID: 431241 + Trichoderma virens (= Hypocrea virens), ID: 413071 + Trichoderma atroviride (= Hypocrea atroviridis) ID: 197014