title: Zebrafish 44K oligo promoter array_Slide 1 of 2
status: Public on May 22 2006
contact.city: Cambridge
contact.first: Elizabeth
contact.last: Herbolsheimer
contact.email: herbolsheimer@wi.mit.edu
contact.state: MA
contact.address: 9 Cambridge Center
contact.country: USA
contact.institute: Whitehead Institute
organism: Danio rerio
description: Microarrays were designed as described below and manufactured by Agilent Technologies (www.agilent.com). Further information on design can be found at http://jura.wi.mit.edu/bioc/gbell/zfish_chip/.
  
  The Whitehead zebrafish promoter chipsets were designed for large-scale chromatin immunoprecipitation using microarrays (ChIP chips). The chipsets represent the promoters of about 11,000 transcriptional units derived using transcript sequences from Refseq, Ensembl, Vega, ZGC, and the Zon Lab. The 2-chipset represents proximal promoters (-1500 nt to +500 nt from the transciptional start site [tss]) on two microarrays of the same density. Probes are spaced an average of 250 nt apart.
manufacture_protocol: as described in www.agilent.com