title: NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0
status: Public on Dec 03 2009
contact.city: Cambridge
contact.first: Christina
contact.last: Curtis
contact.email: christina.curtis@cancer.org.uk
contact.address: Robinson Way
contact.department: Computational Biology/Oncology
contact.country: United Kingdom
contact.institute: University of Cambridge
contact.phone: 01223404231
organism: Homo sapiens
description: Genome build: hg18
  NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf
  NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos
  DESIGN_ID: 4366
  DESIGN_NAME: 2006-07-27_HG18_WG_CGH
  Version: 1.0
  Probe Length: 50-75mer
  Median Probe Spacing: 6270bp
  Catalog number: B4366-00-01
  
  Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.
manufacture_protocol: see manufacturer's website