title: Agilent-059516 D. vulgaris H 8x60K tiling array 030521 [Feature Number version]
status: Public on Sep 17 2015
contact.city: Seattle
contact.first: Serdar
contact.last: Turkarslan
contact.email: sturkarslan@systemsbiology.org
contact.state: WA
contact.address: 401 Terry Ave
contact.country: USA
contact.institute: Institute for Systems Biology
organism: Nitratidesulfovibrio vulgaris str. Hildenborough
description: D. vulgaris Hildenborough tiling array with 8x60K format. Includes ncRNA, chr, mega plasmid, and extra probes per start locus. 149 bp apart probes plus 3 extra probes per start site/orf.
  
  Arrays of this design have barcodes that begin with 16059516 or 2559516.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/