title: [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array [custom CDF Ce25b_MR_v02]
status: Public on May 02 2013
contact.city: Nashville
contact.first: William
contact.middle: Clay
contact.last: Spencer
contact.email: clip78@gmail.com
contact.state: TN
contact.address: 465 21st Ave S
contact.department: Cell & Developmental Biology
contact.country: USA
contact.institute: Vanderbilt University
contact.phone: 4409356643
organism: Caenorhabditis elegans
description: custom CDF of GPL5634
  Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
  
  The GeneChip C. elegans Tiling 1.0R Array is designed for identifying novel transcripts or mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, or other Caenorhabditis elegans whole-genome experiments. The C. elegans 1.0R Array is a single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete non-repetitive Caenorhabditis elegans genome. Sequences used in the design of the C. elegans Tiling 1.0R Array were selected from the WormBase web site, www.wormbase.org, release WS140, March 26, 2005.
  
  Probes are tiled at an average resolution of 25 base pair, as measured from the central position of adjacent 25-mer oligos.
  
  BPMAP and other files can be downloaded from the Affymetrix Web site below.
  Custom gene-level annotation was provided by a custom chip definition file (CDF) derived from Wormbase version 200 (WS200) (see Spencer, et al. 2011).
manufacture_protocol: see manufacturer's web site