title: Agilent-022725 Efetida44KOligoArray
status: Public on Jan 17 2013
contact.city: Vicksburg
contact.first: Ping
contact.last: Gong
contact.email: ping.gong@us.army.mil
contact.state: MS
contact.address: 3909 Halls Ferry Road
contact.department: Environmental Laboratory
contact.country: USA
contact.institute: US Army ERDC
contact.phone: (601) 634-3521
organism: Eisenia fetida
description: Annotation of 43803 probed target sequences using Blast2GO with default threshold settings (BlastX Expect value ? 1.0E-3) and an E-value Hit filter of 1.0E-6
  Efetida44KOligoArray
  Arrays of this design have barcodes that begin with 16022725 or 2522725.
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  The ID column represents the Agilent Feature Extraction feature number.
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  NAME and SPOT_ID represent the unique probe names corresponding to their target gene ID with TA standing for 'target'.
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/