title: Agilent-023456 Custom BCM-Beaudet Human 180K V8cleaned aCGH Array
status: Public on Aug 21 2010
contact.city: Houston
contact.first: April
contact.middle: Burant
contact.last: Hall
contact.state: TX
contact.address: One Baylor Plaza
contact.department: Molecular and Human Genetics
contact.country: USA
contact.institute: Baylor College of Medicine
organism: Homo sapiens
description: array Comparative Genomic Hybridization (arrayCGH)
  180K array with 30kb backbone coverage and exon by exon coverage for 1714 genes reported to be associated with or cause disease
  v8 chip after cleaning
  Arrays of this design have barcodes that begin with 16023456 or 2523456.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/