title: Nimblegen_Oryza sativa japonica_45K
status: Public on Dec 22 2014
contact.city: Villeurbanne
contact.first: Benoît
contact.last: DROGUE
contact.state: Rhône-Alpes
contact.address: Boulevard du 11 novembre
contact.department: Université Lyon 1
contact.country: France
contact.institute: Université de Lyon
organism: Oryza sativa
description: The platform table is based on the Probe ID features. No control probes are included in this table. The .ndf file is linked below as a supplementary file.
manufacture_protocol: The custom-array design was based on a 385K  Nimblegen array format and is composed of 90,000 probes representing 45,000 genes and 201,691 oligomers corresponding to previously described copies of LTR retrotranposons available on the retrOryza database. Array characteristics: Probe length = 60 bp, 2 probes per gene (mostly). Manufacturing and processing of arrays, hybridization and scanning were performed according Nimblegen's recommendations