title: INRA Melampsora larici-populina whole-genome expression array
status: Public on Jul 22 2010
contact.city: Champenoux
contact.first: Annegret
contact.last: Kohler
contact.email: annegret.kohler@inrae.fr
contact.address: Centre Grand Est Nancy
contact.country: France
contact.institute: INRAE
organism: Melampsora laricis-populina
description: The Melampsora larici-populina custom-exon expression array (4 x 72K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contains four independent, nonidentical, 60-mer probes per sequence. Included in the oligoarray are 16,599 Joint Genome Institute (JGI)-annotated gene models, 376 user-annotated gene models, 395 additional putative gene models identified by Eugene prediction, and 315 putative gene models identified by using 454 transcripts and 69 repeat elements. In addition, 1,063 random 60-mer control probes and labelling controls are present on the array. For 440 gene models, technical duplicates are included on the array.
  
  This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute (JGI) Melampsora larici-populina genome sequence version 1.0 (http://genome.jgi-psf.org/Mellp1/Mellp1.home.html ).
manufacture_protocol: Propriety in situ oligonucleotide synthesis.