title: Functional gene array for anaerobic Hanford 100H aquifer community
status: Public on Apr 08 2014
contact.city: Berkeley
contact.first: Ulas
contact.last: Karaoz
contact.email: ukaraoz@lbl.gov
contact.address: 1 Cyclotron Rd.
contact.country: USA
contact.institute: LBNL
organism: mixed sample
description: design name: 130110_Hanford_aquifer_UK_CGH
  Custom 6x630k CGH design for Hanford aquifer community sequences. 313708 60mer probes were selected for the 44964 sequences provided by the customer. 7 probes were selected for 44618 sequences, 6 probes were selected for 95 sequences, 5 probes for 69 sequences, 4 probes for 58 sequences, 3 probes for 44 sequences, 2 probes for 36 sequences and 1 probe for 31 sequences. Probes were laid out in 2 replicates in containers BLOCK1 and BLOCK2. The remaining space on the array was filled with randomly-generated negative control probes of comparable length and composition.
  native array description file: 130110_Hanford_aquifer_UK_CGH.ndf
  native array description file: 130110_Hanford_aquifer_UK_CGH.pos
  native array description file: 130110_Hanford_aquifer_UK_CGH_UX6.ncd
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.