title: Rinn Sabeti P. falciparum Tiling 385k v1.0
status: Public on Mar 16 2011
contact.city: Cambridge
contact.first: Kate
contact.middle: Mariel
contact.last: Broadbent
contact.email: kbroadb@fas.harvard.edu
contact.state: MA
contact.address: FAS Center for Systems Biology Northwest Building, room 469 52 Oxford Street
contact.department: Systems Biology
contact.country: USA
contact.institute: Harvard University
organism: Plasmodium falciparum
description: PlasmoDB v5.5 (www.plasmodb.org)
manufacture_protocol: The design fills 366479 probes on the array and targets the Watson (+) strand of chromosomes 2, 4, 7 and 9 and partial chromosomes 3:106138‐147339, 5:947885‐end, and 12:start‐66805. Probes are variable length oligonucleotides, averaging 55 bp each. Median probe spacing is 12 bp. Probe sequences were screened for excessive cross hybridization to 3D7 sequence: any probes with more than five close SSAHA matches were eliminated.