title: Nimblegen D. yakuba custom 385K array (2007_06_22)
status: Public on Sep 05 2012
contact.city: Iowa City
contact.first: Ana
contact.last: Llopart
contact.email: ana-llopart@uiowa.edu
contact.address: 469 Biology Building
contact.country: USA
contact.institute: University of Iowa
contact.phone: 319-384-1880
organism: Drosophila yakuba
description: Nimblegen Drosophila yakuba custom design array (385K) for expression in D. yakuba, D. santomea and hybrids.  An average of 10 array element probes per gene were selected without-bias vis-a-vis position within the gene model.  Protein coding gene predictions were obtained from final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotations in D. yakuba (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation).  See details of arrays see Llopart (2012).
  The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.