title: [miRNA-1] Affymetrix Multispecies miRNA-1 Array
status: Public on Jul 01 2009
contact.city: Santa Clara
contact.last: Affymetrix
contact.email: geo@ncbi.nlm.nih.gov, support@affymetrix.com
contact.state: CA
contact.country: USA
contact.web_link: http://www.affymetrix.com/index.affx
contact.institute: Affymetrix, Inc.
contact.phone: 888-362-2447
organism: synthetic construct
description: Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
  
  #%create_date=Tue Oct 21 17:29:14 PDT 2008
  #%guid=0000050091-1224635354-0064538561-0684514888-1962062125
  #%chip_type=miRNA-1_0
  # File contains all miRNAs from miRBase that have mapping information grouped by organism, all miRNAs without mapping information grouped by organism (designated as Sequence Type: miRNA), all sno/sca from UCSC (snoRNABase) and Ensembl (designated as Sequence Type: CDBox, HAcaBox, snoRNA and scaRna, and controls).
  # miRNAs:
  # * An annot name generally represents one genome location, but may refer to multiple annotations because of multiple mature products delineated by "-3p" and "-5p", or ".1" and ".2".
  # * Also, those with a '-star' are minor products, and those without '-star' or any other aforementioned suffix are considered the major product.
  # * Probeset IDs may appear more than once because the miRNA was mapped to multiple locations in the genome, and the annot names may have a "-1", "-2", etc type of suffix.
  # * Probeset IDs with a letter suffix (eg, fru-miR-23a and fru-miR-23b) are related miRNAs where the sequence is highly similar.
  # sno/sca:
  # * The sequences for the sno/sca probesets are the entire sequences sent to Chip Design, not just the SIF regions.
  
manufacture_protocol: see manufacturer's web site