title: Nimblegen Human custom 135k tiling array hg19 (OID31380)[100915_HG19_p53_NG_CGH]
status: Public on Dec 10 2012
contact.city: Hamburg
contact.first: Genrich
contact.last: Tolstonog
contact.email: genrich.tolstonog@hpi.uni-hamburg.de
contact.address: P.O. Box 20 16 52
contact.department: Department of Tumor Virology
contact.country: Germany
contact.institute: Heinrich-Pette-Institute, Leibniz Institute for Experimental Virology
contact.phone: +49-40-48051235
organism: Homo sapiens
description: The Nimblegen custom 135k tiling array was designed to cover 1894 genomic intervals that comprise 902 genes (coding and non-coding) and 1 kb 5'-flanking regions of 1040 full-length LINE1 (FL-L1) sequences. 812 tiling intervals cover single genes, 36 tiling intervals cover two genes, and 6 tiling intervals cover three genes. Gene coordinates including flanking regions in a length of 1500 bp were retrieved from Biomart. Annotation in this record is based on the GRCh37 release of the human reference assembly made by the GRC (The Genome Reference Consortium). The genes covered by the array were selected after pilot gene expression studies for identification of genes that are regulated dependent on mutant p53 and wt-p53 expression in human tumor cell lines.
  
  DesignID: 534821
  
  native array description file: 100915_HG19_p53_NG_CGH.ndf
  native array description file: 100915_HG19_p53_NG_CGH.pos
manufacture_protocol: see manufacturer's web site www.nimblegen.com