title: Agilent-045560 Arabidopsis thaliana 8x60k v1_complete
status: Public on Oct 01 2016
contact.city: Madrid
contact.first: Jose M.
contact.last: Franco-Zorrilla
contact.state: Madrid
contact.address: Darwin, 3
contact.department: Plant Molecular Genetics
contact.country: Spain
contact.institute: Centro Nacinal de Biotecnologia-CSIC
organism: Arabidopsis thaliana
description: Microarray based on catalog V4 and includes custom-designed probes to cover 2 probes for most of the genes in TAIR10. Also includes probes for "otherRNA" and lincRNA as in Liu et al. (Plant Cell, 2012) and probes for miRNA precursors in miRBase not included in other probe groups
  
  Arrays of this design have barcodes that begin with 16045560 or 2545560.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/