title: NimbleGen Atlantic Cod Oligonucleotide 135k Array Version 1 [100610_GM_FY_EXP]
status: Public on Jan 22 2013
contact.city: Bergen
contact.first: Fekadu
contact.last: Yadetie
contact.email: fekadu.yadetie@mbi.uib.no
contact.address: Thormøhlensgt. 53A/B
contact.department: Biology
contact.country: Norway
contact.institute: University of Bergen
organism: Gadus morhua
description: NimbleGen design name: 100610_GM_FY_EXP
  NimbleGen design ID: 531893
  Native array description file: 100610_GM_FY_EXP.ndf
  Native array description file: 100610_GM_FY_EXP.ngd
  44k cDNAs were used (26k assembled EST contigs and 18 singletons from the cod genome sequencing consortium; see The genome sequence of Atlantic cod reveals a unique immune system Starr et al., 2011; Nature 477:207 [PMID 21832995]). Three 60mer probes were prepared for each cDNA sequence, 125826 cod probes in total.  The array contains 137604 features, including  11779 Nimblegen control probes.
  The supplementary file 'GPL15700_cDNA_seqs.txt' contains all cDNA sequences used in the design of the probes.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.