The destruction of serine and threonine thiohydantoins during the sequence determination of peptides by 4-N,N-dimethylaminoazobenzene 4'-isothiocyanate.
1. A mechanism for the destruction of serine and threonine thiohydantoins during protein sequence analysis by the Edman-type degradation is proposed. The mechanism begins with the dehydration of serine and threonine side chains (at the cyclization stage) which occurs mainly in anhydrous acid solution. The dehydrated derivatives finally polymerize by way of the reactive methylene group (enamine) to form polymers with various molecular weights. In aqueous acid solution, the dehydrated thiohydantoins of serine and threonine undergo hydration (according to the Markovnikov rule) and ring fission, which leads to the irreversible breakdown of thiohydantoin ring. The serine derivative shows a much greater tendency to undergo these side-reactions than the threonine derivative. 2. In the presence of oxygen, the alkaline hydrolysis of amino acid thiohydantoins goes through an oxidation-deamination reaction at the C-N bond of the thiohydantoin ring and leads to the formation of thiourea derivative and keto acids. This reaction mechanism accounts for the low recoveries of amino acid obtained from the alkaline hydrolysis of amino acid thiohydantoins.
D000595:Amino Acid Sequence; D055598:Chemical Phenomena; D002621:Chemistry; D002855:Chromatography, Thin Layer; D006827:Hydantoins; D006863:Hydrogen-Ion Concentration; D010100:Oxygen; D010455:Peptides / Q000032:analysis*; D012694:Serine; D013056:Spectrophotometry, Ultraviolet; D013861:Thiocyanates; D013867:Thiohydantoins; D013912:Threonine; D004124:p-Dimethylaminoazobenzene / Q000031:analogs & derivatives
D006827:Hydantoins; D010455:Peptides; D013861:Thiocyanates; D013867:Thiohydantoins; D013912:Threonine; D012694:Serine; D004124:p-Dimethylaminoazobenzene; D010100:Oxygen