title: Circular dichroism and absorbance properties of nitrotyrosyl chromophores in staphylococcal nuclease and in a model diketopiperazine.
abstract: An active derivative of staphylococcal nuclease, in which only tyrosine residue 115 has been nitrated with use of tetranitromethane, has been characterized using absorbance, circular dichroism, and fluorescence spectroscopy. The results show that nitrotyrosine-115 nuclease is indistinguishable from native nuclease with regard to the average secondary structure of the folded polypeptide chain, the susceptibility of the enzyme to heat denaturation, and the local tertiary structure around tryptophan residue 140. Inasmuch as optical properties of nitrotyrosine-115 nuclease from 300 to 500 nm can be unambiguously assigned to nitrotyrosine residue 115 in the active site region, this modified enzyme presents a good model system for studying the circular dichroism properties of this aromatic amino acid in a protein. The spectral properties of nitrotyrosine-115 nuclease have been compared to those of the model compounds, cyclo-(-Gly-Tyr(3NO2)-) and Tyr(3NO2). Circular dichroism spectral changes in nitrotyrosine-115 nuclease due to the binding of deoxythymidine 3',5'-diphosphate and Ca-2+ have been compared to the corresponding nitrotyrosyl-115 absorption spectral changes. This comparison shows that the circular dichroism difference spectrum exhibits an over-all change in the intensity of the observed Cotton effects, whereas the absorption difference spectrum exhibits a blue shift. This finding supports the suggestion that perturbations of aromatic amino acid chromophores in proteins due to ligand binding result in red or blue shifts in absorption difference spectra, but in over-all changes of intensity in circular dichroism difference spectra.
mesh_terms: D000595:Amino Acid Sequence; D001665:Binding Sites; D002118:Calcium; D002942:Circular Dichroism; D003851:Deoxyribonucleases; D006863:Hydrogen-Ion Concentration; D009574:Nitro Compounds; D010879:Piperazines; D011485:Protein Binding; D011487:Protein Conformation; D011489:Protein Denaturation; D012260:Ribonucleases; D013050:Spectrometry, Fluorescence; D013053:Spectrophotometry; D013056:Spectrophotometry, Ultraviolet; D013210:Staphylococcus / Q000201:enzymology*; D013942:Thymine Nucleotides; D014443:Tyrosine
chemical_list: D009574:Nitro Compounds; D010879:Piperazines; D013942:Thymine Nucleotides; D014443:Tyrosine; D003851:Deoxyribonucleases; D012260:Ribonucleases; D002118:Calcium