An e.s.r. and spin-trapping study of the reactions of the SO4- radical with protein and nucleic acid constituents.
Reactions of the SO4- radical, generated by U.V. photolysis of Na2S2O8, were studied in aqueous solutions of amino acids, dipeptides, nucleic acid bases, nucleosides and nucleotides. The transient free radicals so formed were spin-trapped by t-nitrosobutane and identified by e.s.r. spectroscopy. The amino acids primarily undergo oxidative decarboxylation. The pKs of the ammonium groups of the spin-trapped decarboxylated radicals of glycine and alanine in D2O were determined to be 8.3 +/- 0.2. An oxidation product, which is the precursor of the decarboxylated radical, is tentatively identified for alanine, valine and isoleucine. Radicals formed by hydrogen abstraction by SO-4 are identified for leucine, serine, phenylalanine and 4-hydroxyproline. In dipeptides, SO-4 produces decarboxylation of the amino acid located at the carboxylate terminal residue. For gly-ala and ala-ala, radicals generated by hydrogen abstraction from the carboxylate terminal residue alanine were also characterized. Radicals centered on the C(5) carbon were observed for uracil, cytosine and thymine. For nucleosides and nucleotides, radicals situated on the base and/or the sugar moiety were assigned.
D000596:Amino Acids; D055598:Chemical Phenomena; D002621:Chemistry; D004151:Dipeptides; D004578:Electron Spin Resonance Spectroscopy; D005609:Free Radicals; D008968:Molecular Conformation; D010084:Oxidation-Reduction; D010782:Photolysis; D011743:Pyrimidines; D013431:Sulfates
D000596:Amino Acids; D004151:Dipeptides; D005609:Free Radicals; D011743:Pyrimidines; D013431:Sulfates