5-Substituents in the uridine moiety and their effect on the conformation of ApU-type dinucleoside phosphates.
The ApU analogues ApT, Apcl5U, Apbr5U, Apa5U and Apno5(2)U were synthesized with the aid of ribonuclease U2 starting from 2',3'-cyclic Ap and the respective uridine derivatives. For these compounds the ultraviolet data, the difference spectra, the hypochromism and the temperature dependence of the CD spectra are reported. The dimerisation shifts of the pyrimidine protons which were obtained from the 100 MHz PMR spectra confirm the optical results. The influence of the substituents in the 5 position of the uracil ring on base-base interaction and the conformation of the dinucleoside phosphates is discussed with respect to the van der Waals radii and the electronic effects of these groups. As calculated from the hypochromism the dinucleoside phosphates can be arranged according to decreasing base-base interaction: Apno5(2)U greater than Apbr5U approximately ApT greater than Apcl5U greater than ApU greater than Apa5U.
D002942:Circular Dichroism; D008968:Molecular Conformation; D009690:Nucleic Acid Conformation; D012265:Ribonucleotides; D013056:Spectrophotometry, Ultraviolet; D013329:Structure-Activity Relationship; D014529:Uridine / Q000031:analogs & derivatives*
D012265:Ribonucleotides; D014529:Uridine