[Several properties of complexes of polynucleotides with aromatic amino acid amides of oligonucleotides].
Residues of Phe, Tyr and Trp in the complexes of their oligonucleotide amidates and polynucleotides of A-U of G-C nucleotide composition are most likely localized in the minor groove of the Watson--Crick part of the triple helix where they interact with bases but do not intercalate into the helix. Formation of the complexes is accompanied with a change in the relative localization of amino acids and bases. The major geometrical parameters of the triple helices of the complexes are not changed by the residues of aromatic amino acids (according to CD data). A slight violation of stacking interactions between bases is observed along with an increase of the cooperativity of melting of the complexes of A-U composition (according to UV absorption data). The effect of the residues of aromatic amino acids on the stability of triple helices is determined by the nucleotide composition of the latter, i.e. complexes of A-U composition are destabilized with the Phe, Tyr and Trp residues, whereas the Trp residue does not affect the stability of the complexes of G-C composition. The hydrophobic character of aromatic amino acids and their different affinity for bases of different structure seem to account for this difference in stability. The dependence of the thermal stability of RNH-dp(An).2poly(U)-complexes on the structure of the amide radical (residues of glycin, aromatic amino acids, alkyl- and arylalkyl amines) testifies the ability of the radical to "regulate" the interaction between the oligomer and the complementary polynucleotide. This capacity for "regulation" is not observed in the system of G-C composition.
D000577:Amides; D000596:Amino Acids; D055598:Chemical Phenomena; D002621:Chemistry; D002942:Circular Dichroism; D008956:Models, Chemical; D009698:Nucleoproteins; D009841:Oligonucleotides; D011066:Poly C; D011072:Poly U; D011131:Polyribonucleotides; D011487:Protein Conformation; D013050:Spectrometry, Fluorescence; D013056:Spectrophotometry, Ultraviolet
D000577:Amides; D000596:Amino Acids; D009698:Nucleoproteins; D009841:Oligonucleotides; D011131:Polyribonucleotides; D011072:Poly U; D011066:Poly C
Nekotorye svoĭstva kompleksov aromaticheskikh aminokislotnykh amidov oligonukleotidov s polinukleotidami.