title: Binding site of a dextran-specific homogeneous IgM: thermodynamic and spectroscopic mapping by dansylated oligosaccharides.
abstract: The hapten binding properties of the homogeneous mouse IgM secreted by MOPC-104E were investigated. Hapten-association constants were determined either by equilibrium and displacement equilibrium dialysis or by fluorometric titrations of the protein with the fluorescent derivatives of the haptens. For the latter type of measurements, several oligosaccharides were derivatized to the corresponding dansylhydrazones. The synthesis, generally applicable to oligosaccharides with free reducing ends, is described. Analysis of the thermodynamic parameters for the binding of 18 haptens forms the basis for proposing a model of the binding site of MOPC-104E. This model is supported and refined by results of the measurements of linear and circular polarization of the fluorescence of the dansylated haptens. The binding site is proposed to consist of a cavity with about 12-A depth, complementary to a terminal nonreducing nigerosyl group. At the entrance to this cavity, a further subsite is identified forming interactions of lower specificity with an additional glucose unit.
mesh_terms: D001665:Binding Sites; D002460:Cell Line; D003619:Dansyl Compounds; D003911:Dextrans; D006241:Haptens; D007075:Immunoglobulin M; D009844:Oligosaccharides; D011485:Protein Binding; D013053:Spectrophotometry; D013329:Structure-Activity Relationship; D013816:Thermodynamics
chemical_list: D003619:Dansyl Compounds; D003911:Dextrans; D006241:Haptens; D007075:Immunoglobulin M; D009844:Oligosaccharides