Fluorescence energy-transfer measurements between the calcium binding site and the specificity pocket of bovine trypsin using lanthanide probes.
Using fluorescence energy-transfer experiments we have measured the distance between the specificity pocket and the calcium ion binding site of bovine pancreatic trypsin. Proflavin and thionine were used to block the specificity site, whereas various lanthanide ions were substituted for the calcium. It was then possible to choose various donor-acceptor pairs which exhibit suitable energy transfer. We have calculated the distance between proflavin and Nd(III), Pr(III), and Ho(III) to be 10.9, and 10.3, and 10.3 A, respectively. This agrees very well with the value of approximately 10 A we obtained between the methyl protons of p-toluamidine (a competitive inhibitor) and Gd(III) using nuclear magnetic resonance techniques (Abbott, F., Gomez, J.E., Birnbaum, E.R., and Darnall, D.W. (1975), Biochemistry 14, 4935). This is strong evidence that, in solution, the calcium binding site is composed of the side chains of Ser-190 and Asp-194.
D000595:Amino Acid Sequence; D000818:Animals; D001665:Binding Sites; D002118:Calcium; D002417:Cattle; D005682:Gadolinium; D006695:Holmium; D009354:Neodymium; D011370:Proflavine; D011399:Promethium; D011485:Protein Binding; D011487:Protein Conformation; D013045:Species Specificity; D013053:Spectrophotometry; D014357:Trypsin
D009354:Neodymium; D005682:Gadolinium; D011370:Proflavine; D014357:Trypsin; D002118:Calcium; D006695:Holmium; D011399:Promethium