Principal component analysis of infraspecific variation in bacteria.
In certain types of ecological investigations it may be desirable to investigate infraspecific variation in bacteria. Principal component analysis is demonstrated to be satisfactory for this purpose. Hypothetical bacterial populations were used to show that such analysis can be used to compare collections of bacterial isolates taken at different times or from different sources. Alternatively, given n isolates, whether they represent a single bacterial population can be determined. The method is applied to authentic collections of bacteria in three separate analyses. The results are compatible with current taxonomic tenets.
D001419:Bacteria / Q000032:analysis / Q000145:classification*; D001431:Bacteriological Techniques; D003201:Computers; D004755:Enterobacteriaceae / Q000145:classification; D004926:Escherichia coli / Q000145:classification; D014644:Genetic Variation; D008433:Mathematics; D012760:Shigella / Q000145:classification; D013045:Species Specificity