Regulation of RNA synthesis in Escherichia coli. III. Degradation of guanosine 5'-diphosphate 3'-diphosphate in cold-shocked cells.
Cold-shocked cells of Escherichia coli can degrade intracellularly accumulated guanosine 5'-diphosphate 3'-diphosphate (ppGpp). The rate of ppGpp degradation is governed, as in whole cells, by the spoT gene; a rapid breakdown reaction is associated with the presence of the spoT+ allele and at least a five-fold slower decay occurs in spoT-minus mutants. The two degradation reactions in shocked cells display the following similarities: (i) the rates of degradation are equivalent to whole cell estimates, (ii) both require a full complement of activated amino acids, (iii) both are dependent upon supplements in the reaction mixture which stimulate the availability of energy-rich compounds and (iv) neither is inhibited by concentrations of ribosomal antibiotics which severely restrict protein synthesis. Apart from characteristic rate  differences, decay of ppGpp in shocked cells derived from spoT-minus strains is discerned from spoT+ mediated decay in shocked cells by sensitivity to high concentrations of tetracycline and by manganese ion dependence.
D000483:Alleles; D000596:Amino Acids / Q000494:pharmacology; D003080:Cold Temperature; D004926:Escherichia coli / Q000254:growth & development / Q000378:metabolism*; D005796:Genes; D006150:Guanine Nucleotides / Q000096:biosynthesis / Q000378:metabolism*; D007700:Kinetics; D008345:Manganese / Q000494:pharmacology; D009154:Mutation; D012329:RNA, Bacterial / Q000096:biosynthesis*; D012343:RNA, Transfer / Q000494:pharmacology; D013045:Species Specificity; D013752:Tetracycline / Q000494:pharmacology
D000596:Amino Acids; D006150:Guanine Nucleotides; D012329:RNA, Bacterial; D008345:Manganese; D012343:RNA, Transfer; D013752:Tetracycline