[Recognition between tRNAs and aminoacyl-tRNA-synthetases of different specificities].
A few examples of incorrect interactions between aminoacyl-tRNA-synthetases and tRNAs extracted from the same organism have already been demonstrated. These interactions can lead, in most cases, to incorrect aminoacylations. The lack of specificity of the aminoacyl-tRNA suggests that incorrect interactions could be a general phenomenon. The aim of this study is to check whether incorrect interactions are a general feature, i.e. whether every aminoacyl-tTNA-synthetase is able to interact with homologous non-cognate tRNAs. In that case, it is interesting to know whether a given aminoacyl-tRNA-synthetase is able to recognize any tRNA or only a particular group of tRNAs. The existence of such groups would lead to the concept of tRNA families. For that, we estimated the affinities of non-cognate homologous tRNA species for yeast valyl-tRNA-synthetase by using competition experiments. The measured affinities varied, in standard aminoacylation conditions, between 1:100 to 1:1000 of that of the non-cognate tRNA. In the absence of Mg2+ ions or in the presence of low concentration of this cation, the affinities were higher and could reach 1:3 of the affinity of the cognate tRNA. On the other hand, we determined the inhibitory effect of a high concentration of tRNAVal toward the aminoacylation of tRNAs specific for 13 amino acids. In order to compare the effects, we determined approximate Km/Ki values. These values ranged from 0.07 for methionyl tRNA synthetase to 0.002 for leucyl tRNA synthetase. For some aminoacyl-tRNA-synthetases, the inhibition was too low to be detected by this technique. Two conclusions arise from this study. First, it seems that non-specific recognitions are quite a general phenomenon. Secondly, if one classifies tTNAs according to their affinities for valyl-tRNA-synthetase, it does not appear any well cut group of tRNAs. This result is not conflicting with the fact that on the basis of aminoacylation criteria several authors have found tRNA and aminoacyl-tRNA-synthetase families since we have already shown that discrimination depends rather on the maximal velocity of the reaction than on the affinity between the tRNA and the aminoacyl-tRNA-synthetases. Finally, the non-existence of clear-cut recognition families of tRNAs casts some doubts on the approach consisting in the characterisation of recognition sites of the tRNAs by the aminoacyl-tRNA-synthetases by comparing the sequences of tRNAs which are amonoacylated by a given aminoacyl-tRNA-synthetase.
D001665:Binding Sites; D007700:Kinetics; D012343:RNA, Transfer; D013329:Structure-Activity Relationship
D012343:RNA, Transfer
Uznavanie tRNK aminoatsil-tRNK-sintetazami razlichnoĭ spetsifichnosti