title: A sequence-dependent 1H-NMR study on the formation of beta-turns in tetrapeptides containing charged residues.
abstract: The importance of side-chain charge interactions in the formation of beta-turns was studied. Sixteen protected NAc-tetrapeptide amides were studied, namely the variants of DEKS: NEKS, EEKS, DDKS, DQKS, NQKS, DERS, NERS, EERS, DDRS, NDRS, DQRS, and DKES. Three tetrapeptides--NPDM, NSDM, and NDDS--were also studied as they have a high probability of forming beta-turns, based on statistical predictions. The results indicate that a small proportion of type I beta-turn exists in solutions of DEKS and DERS in methanol/water (60/40), while NEKS has an even smaller population of this turn. The other tetrapeptides are present in solution only in the extended conformation. These results clearly show the importance of the salt bridge between the side chains of K2 and E3 or R2 and E3, as well as the importance of the charge on the side chain of the first residue in stabilizing the beta-turn. The relevance of statistical predictions for beta-turns in short peptides is discussed.
authors.affiliation: Department of Chemistry, University of Alberta, Edmonton, Canada.
authors.forename: X
authors.initials: X
authors.lastname: Liu
authors.forename: P G
authors.initials: PG
authors.lastname: Scott
authors.forename: A
authors.initials: A
authors.lastname: Otter
authors.forename: G
authors.initials: G
authors.lastname: Kotovych
mesh_terms: D000577:Amides / Q000737:chemistry; D000595:Amino Acid Sequence; D004563:Electrochemistry; D006863:Hydrogen-Ion Concentration; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D009842:Oligopeptides / Q000737:chemistry*; D011487:Protein Conformation; D011522:Protons; D013696:Temperature
chemical_list: D000577:Amides; D009842:Oligopeptides; D011522:Protons