title: Role of Asp-9 and Glu-36 in the active site of the pneumococcal CPL1 lysozyme: an evolutionary perspective of lysozyme mechanism.
abstract: The role of carboxylic amino acids Asp-9 and Glu-36 in the activity of CPL1 lysozyme was investigated by site-directed mutagenesis. The enzymatic activity of the single mutants D9E, D9N, D9H, D9K, D9A, E36D, E36Q, E36K, and E36A and of the double mutant D9A-E36A was analyzed using a highly sensitive radioactive assay. All mutants but D6K showed detectable activities. Interestingly, the mutants E36D and E36Q retained 67% and 37% activity, respectively. Amino acid replacements at position 9 turned out to be more critical for activity than at position 36. In analogy to the mechanism described for hen egg-white lysozyme, where the proton donor play a central role, we propose that, in the CPL1 lysozyme, Asp-9 might act as the proton donor for activation of the substrate, and Glu-36 could help in the stabilization of the intermediate oxocarbocation. The residual activity of lysozyme mutants lacking one or two of the acidic amino acids may be explained by the participation of a water molecule as proton donor and/or to electrostatic contributions in the active center stabilizing the transition state of the reaction. Our results are in agreement with the hypothesis that enzymes have been optimized during evolution from an ancestral protein able to bind more tightly the transition state of the substrate than the substrate itself, by the acquisition of amino acids serving a function in catalysis.
authors.affiliation: Unidad de Genética Bacteriana, Consejo Superior de Investigaciones Científicas, Velázquez, Madrid, Spain.
authors.forename: J M
authors.initials: JM
authors.lastname: Sanz
authors.forename: P
authors.initials: P
authors.lastname: García
authors.forename: J L
authors.initials: JL
authors.lastname: García
mesh_terms: D000595:Amino Acid Sequence; D001216:Asparagine; D001483:Base Sequence; D001665:Binding Sites; D005075:Biological Evolution; D004252:DNA Mutational Analysis; D005973:Glutamine; D008969:Molecular Sequence Data; D009113:Muramidase / Q000096:biosynthesis / Q000737:chemistry / Q000378:metabolism*; D016297:Mutagenesis, Site-Directed; D011994:Recombinant Proteins / Q000096:biosynthesis; D017385:Sequence Homology; D013296:Streptococcus pneumoniae / Q000201:enzymology*; D013329:Structure-Activity Relationship
chemical_list: D011994:Recombinant Proteins; D005973:Glutamine; D001216:Asparagine; D009113:Muramidase