title: The carboxyl terminus of RAP30 is similar in sequence to region 4 of bacterial sigma factors and is required for function.
abstract: Transcription factor beta gamma (RAP30/74) from rat liver was previously shown in biochemical studies to control the binding of RNA polymerase II to promoters by a mechanism analogous to that utilized by bacterial sigma factors, by decreasing the affinity of polymerase for nonpromoter sites on DNA and by increasing the affinity of the enzyme for the preinitiation complex (Conaway, R. C., Garrett, K. P., Hanley, J. P., and Conaway, J. W. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 6205-6209). By constructing and analyzing mutants of beta gamma, we have identified a novel functional domain located in the carboxyl terminus of the gamma (RAP30) subunit. This domain shares sequence similarity with region 4 of bacterial sigma factors; in particular, it exhibits striking similarity to the carboxyl-terminal regions 4.1 and 4.2 of SpoIIIC (Bacillus subtilis sigma k). Evidence from biochemical studies argues that a mutant gamma (RAP30), lacking amino acid sequences similar to sigma homology region 4.2, is able to assemble with the beta (RAP74) subunit to form a mutant beta gamma (RAP30/74) with impaired ability to interact with RNA polymerase II.
authors.affiliation: Program in Molecular and Cell Biology, Oklahoma Medical Research Foundation, Oklahoma City 73104.
authors.forename: K P
authors.initials: KP
authors.lastname: Garrett
authors.forename: H
authors.initials: H
authors.lastname: Serizawa
authors.forename: J P
authors.initials: JP
authors.lastname: Hanley
authors.forename: J N
authors.initials: JN
authors.lastname: Bradsher
authors.forename: A
authors.initials: A
authors.lastname: Tsuboi
authors.forename: N
authors.initials: N
authors.lastname: Arai
authors.forename: T
authors.initials: T
authors.lastname: Yokota
authors.forename: K
authors.initials: K
authors.lastname: Arai
authors.forename: R C
authors.initials: RC
authors.lastname: Conaway
authors.forename: J W
authors.initials: JW
authors.lastname: Conaway
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D000906:Antibodies; D001483:Base Sequence; D003001:Cloning, Molecular; D004247:DNA / Q000235:genetics; D006801:Humans; D015151:Immunoblotting; D007700:Kinetics; D008099:Liver / Q000502:physiology; D008969:Molecular Sequence Data; D010455:Peptides / Q000138:chemical synthesis / Q000276:immunology; D051381:Rats; D011994:Recombinant Proteins / Q000032:analysis / Q000378:metabolism; D017384:Sequence Deletion; D017386:Sequence Homology, Amino Acid; D012808:Sigma Factor / Q000032:analysis / Q000235:genetics* / Q000378:metabolism*; D014157:Transcription Factors / Q000032:analysis / Q000235:genetics* / Q000378:metabolism*; D019473:Transcription Factors, TFII; D014158:Transcription, Genetic
chemical_list: D000906:Antibodies; D010455:Peptides; D011994:Recombinant Proteins; D012808:Sigma Factor; D014157:Transcription Factors; D019473:Transcription Factors, TFII; D004247:DNA; C056604:transcription factor TFIIF