Detection of the thermostable direct hemolysin gene (tdh) and the thermostable direct hemolysin-related hemolysin gene (trh) of Vibrio parahaemolyticus by polymerase chain reaction.
Polymerase chain reaction (PCR) protocols were established for specific detection of the tdh and trh genes, the virulence marker genes of Vibrio parahaemolyticus encoding two related hemolysins. The tdh and trh genes are known to have sequence divergence of up to 3.3% and 16%, respectively. Attempts were made to find suitable primer pairs and annealing temperatures to detect each gene without fail. DNAs extracted from 36 representative strains of V. parahaemolyticus were used in the initial screening with various combinations of primer pairs and annealing temperatures. The combinations of primer pairs and annealing temperatures selected were then tested with DNAs extracted from 227 more strains of V. parahaemolyticus and from 133 bacterial strains belonging to 40 species other than V. parahaemolyticus. PCR protocols (primer pairs and annealing temperatures) were established that gave identical results to those obtained with the tdh- and trh-specific polynucleotide probes. These protocols established for the tdh and trh genes could detect 400 fg (100 cells) of cellular DNA carrying the respective gene. Spike experiments demonstrated that the sensitivities of the established PCRs were reduced by a factor of 10(4)-10(5) by an inhibitor(s) present in a normal faecal sample, indicating the need for either DNA extraction or enrichment of the faecal sample in alkaline peptone water for 4 h before the PCR of faecal samples.
Tada
J
J
Central Research Laboratory, Shimadzu Corporation, Kyoto, Japan.
Ohashi
T
T
Nishimura
N
N
Shirasaki
Y
Y
Ozaki
H
H
Fukushima
S
S
Takano
J
J
Nishibuchi
M
M
Takeda
Y
Y
D001483:Base Sequence; D015415:Biomarkers; D004269:DNA, Bacterial / Q000235:genetics*; D005243:Feces / Q000382:microbiology; D005798:Genes, Bacterial; D006460:Hemolysin Proteins / Q000235:genetics*; D006801:Humans; D008969:Molecular Sequence Data; D015345:Oligonucleotide Probes; D016133:Polymerase Chain Reaction; D012680:Sensitivity and Specificity; D014736:Vibrio parahaemolyticus / Q000235:genetics* / Q000302:isolation & purification / Q000472:pathogenicity; D014774:Virulence
D015415:Biomarkers; D004269:DNA, Bacterial; D006460:Hemolysin Proteins; D015345:Oligonucleotide Probes