KEY, LOCK, and LOCKSMITH: complementary hydropathic map predictions of drug structure from a known receptor-receptor structure from known drugs.
Three new routines (LOCK, KEY and LOCKSMITH) for the program HINT (hydrophobic interactions) are described and demonstrated. The KEY routine uses receptor structure to model the hydropathic profile of the ideal substrate for the receptor. The LOCK routine uses substrate or drug structure to model the hydropathic character of the receptor. LOCKSMITH is an algorithm designed to highlight the significant hydropathic features from a collection of agents. Ten allosteric modifiers of hemoglobin that have been characterized biologically and with X-ray diffraction to determine their protein binding sites/conformations illustrate the KEY and LOCKSMITH routines: The LOCKSMITH composite map correctly identifies the structural features and conformation of the more active modifiers. In addition, many hydropathic features of the "ideal" drug predicted by the KEY map overlap with actual structural features of the most active hemoglobin allosteric modifiers.
Kellogg
G E
GE
Department of Medicinal Chemistry, Virginia Commonwealth University, Richmond 23298-0540.
Abraham
D J
DJ
D000465:Algorithms; D000495:Allosteric Site; D001665:Binding Sites; D003196:Computer Graphics; D015195:Drug Design; D006454:Hemoglobins / Q000737:chemistry; D006801:Humans; D008958:Models, Molecular; D008968:Molecular Conformation; D015394:Molecular Structure; D004364:Pharmaceutical Preparations / Q000737:chemistry*; D011955:Receptors, Drug / Q000737:chemistry*; D012984:Software; D013329:Structure-Activity Relationship
D006454:Hemoglobins; D004364:Pharmaceutical Preparations; D011955:Receptors, Drug; C100003:deoxyhemoglobin