title: Polymerase chain reaction--amplification of the coding sequence of the type X collagen gene from genomic DNA and identification of a polymorphism that changes Gly to Arg at position 545 by single-strand conformation polymorphism analysis.
abstract: Type X collagen is a specific product of hypertrophic growth plate chondrocytes and it has been suggested that mutations in the corresponding gene (COL1OA1) may be responsible for certain heritable disorders affecting growth plate cartilage such as the epiphyseal dysplasias. We have amplified the coding region of COL1OA1 employing polymerase chain reaction (PCR) of genomic DNA. Single-strand conformation polymorphism (SSCP) analysis of PCR products followed by direct sequencing identified a G to C transition that results in a Gly to Arg substitution at position 545 of the polypeptide chain. The sequence variation was confirmed by restriction enzyme analysis with BsaJ 1. Analysis of a family with multiple epiphyseal dysplasia ruled out this sequence change as a cause of the disease. This is the first report showing application of SSCP for detection of a sequence variant in COL1OA1.
authors.affiliation: Department of Medicine, Jefferson Medical College, Thomas Jefferson University, Philadelphia, PA 19107.
authors.forename: R M
authors.initials: RM
authors.lastname: Dharmavaram
authors.forename: M
authors.initials: M
authors.lastname: Peng
authors.forename: R R
authors.initials: RR
authors.lastname: Strawbridge
authors.forename: S A
authors.initials: SA
authors.lastname: Jimenez
mesh_terms: D001120:Arginine / Q000235:genetics*; D001483:Base Sequence; D003094:Collagen / Q000235:genetics*; D004247:DNA / Q000737:chemistry*; D005998:Glycine / Q000235:genetics*; D006801:Humans; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010009:Osteochondrodysplasias / Q000235:genetics; D010375:Pedigree; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic
chemical_list: D003094:Collagen; D004247:DNA; D001120:Arginine; D005998:Glycine