title: Internal editing of the maize chloroplast ndhA transcript restores codons for conserved amino acids.
abstract: The NADH dehydrogenase subunit A (ndhA) gene from maize chloroplasts encodes a highly conserved peptide, which at several positions could be restored to consensus sequences by potential C-to-U editing of the codons involved. This gene was, therefore, chosen for analysis of its mRNA sequence in the form of amplified cDNA. A comparison of this cDNA sequence with the plastome-encoded ndhA sequence reveals four C-to-U editing sites, thereby demonstrating as a novel finding that chloroplast editing can also affect internal mRNA positions. All the edited codons restore amino acids that are conserved in the ndhA-encoded peptides of other chloroplast species. Alignment with homologous mitochondrial NADH-ubiquinone reductase subunit 1 (nad1) sequences of plant and even nonplant species shows that two of the editing positions restore universally conserved amino acids and that one editing site is even shared with nad1 mRNA of plant mitochondria. No editing sites could be detected in the cDNA derived from transcripts of the maize chloroplast RNA polymerase alpha-subunit (rpoA) gene.
authors.affiliation: Institut für Biologie III, Universität Freiburg, Germany.
authors.forename: R M
authors.initials: RM
authors.lastname: Maier
authors.forename: B
authors.initials: B
authors.lastname: Hoch
authors.forename: P
authors.initials: P
authors.lastname: Zeltz
authors.forename: H
authors.initials: H
authors.lastname: Kössel
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D002736:Chloroplasts / Q000378:metabolism*; D003062:Codon; D004247:DNA; D006801:Humans; D008928:Mitochondria / Q000378:metabolism; D008969:Molecular Sequence Data; D009245:NADH Dehydrogenase / Q000235:genetics*; D016133:Polymerase Chain Reaction; D012318:RNA Polymerase I / Q000235:genetics; D012323:RNA Processing, Post-Transcriptional; D012689:Sequence Homology, Nucleic Acid; D014158:Transcription, Genetic; D003313:Zea mays / Q000235:genetics*
chemical_list: D003062:Codon; D004247:DNA; D009245:NADH Dehydrogenase; D012318:RNA Polymerase I