title: On how hydrolysis at the 3' end is prevented in the splicing of a sequentially folded group I intron.
abstract: We propose a dynamic model for the competition between exon-exon ligation and 3'-end hydrolysis valid for sequentially folded pre-mRNA introns of group I. This model accounts for the delay in the formation of conserved helix P10 until the 5' exon has been cleaved, a requirement to prevent hydrolysis at the 3' end of the intron. The model is rooted on computer simulations whereby the pre-mRNA searches for its structure as it is being transcribed. Thus, a competing interaction, engaging the internal guiding sequence, occurs initially and prevents P10 from forming until the 3' end of the 5' exon is habilitated as a nucleophilic agent. It is further shown that a destabilization of the competing interaction invariably leads to 3' hydrolysis, crippling the splicing capability of the intron. The results may be probed by site-directed mutagenesis.
authors.affiliation: Department of Chemistry, University of Miami, Coral Gables, FL 33124.
authors.forename: A
authors.initials: A
authors.lastname: Fernández
mesh_terms: D001483:Base Sequence; D006868:Hydrolysis; D007438:Introns; D007700:Kinetics; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D012326:RNA Splicing; D012333:RNA, Messenger / Q000235:genetics* / Q000378:metabolism; D013816:Thermodynamics
chemical_list: D012333:RNA, Messenger