Distortions induced in DNA by cis-platinum interstrand adducts.
A 22 base pair double-stranded oligonucleotide containing a unique interstrand adduct resulting from chelation of the two guanine residues within the central sequence d(TGCT/AGCA) by a cis-platinum residue has been studied by means of gel electrophoresis, chemical probes, and molecular mechanics. The anomalously slow electrophoretic mobility of the multimers of the platinated and ligated oligomers suggests that the platinated oligonucleotide is bent. The two cytosine residues (complementary to the platinated guanines) are hyperreactive to hydroxylamine, indicating a large exposure of the two bases to the solvent. The adduct does not induce a local denaturation within the flanking sequences since the adenine residues are not reactive with diethyl pyrocarbonate. This is confirmed by the nonreactivity of the complementary T residues with osmium tetraoxide. These results and the molecular mechanics modeling suggest that the interstrand adduct bends the double helix by approximately 55 degrees toward the major groove, that the double helix conserves its average twist angle, and that the distortion induced by the adduct is localized at the platinated sequence d(GC/CG).
Sip
M
M
Centre de Biophysique Moléculaire, CNRS, Orléans, France.
Schwartz
A
A
Vovelle
F
F
Ptak
M
M
Leng
M
M
D001483:Base Sequence; D004247:DNA / Q000737:chemistry / Q000187:drug effects*; D003854:Deoxyribonucleotides / Q000737:chemistry; D004591:Electrophoresis, Polyacrylamide Gel; D008958:Models, Molecular; D008969:Molecular Sequence Data; D015394:Molecular Structure; D009690:Nucleic Acid Conformation; D010984:Platinum / Q000494:pharmacology*; D012966:Sodium Cyanide / Q000494:pharmacology
D003854:Deoxyribonucleotides; D010984:Platinum; D004247:DNA; D012966:Sodium Cyanide