title: Chromosomal localization of transfected genes by a combination of hot banding and fluorescence in situ hybridization.
abstract: We describe the combination of hot banding with fluorescence in situ hybridization as a rapid and efficient method to identify integration sites of transfected DNA sequences in chromosomes. As a test system we used SW480 EJ2, a clonal cell line obtained after transfection of SW480 with pSV2neoEJ, a plasmid containing a point-mutated, c-Ha-RAS oncogene. Nick-translated probes were compared with random primed-labeled probes to evaluate their relative efficiency in fluorescence in situ hybridization. The fluorescence signals were quantified in interphase nuclei by confocal scanning laser microscopy. Nick-translated probes were found to yield better results. Hot banding followed by fluorescence in situ hybridization localized the integration site of pSV2neoEJ in SW480 EJ2 at the site of a translocation on a marker chromosome Xp+. The combination of fluorescence in situ hybridization and hot banding can be used to (a) rapidly and efficiently analyze integration sites in large numbers of transfectants, (b) assess the clonality of transfected cell lines, and (c) localize the site of integration of transfected genes in the recipient genome.
authors.affiliation: Department of Pathology, State University of Limburg, Maastricht, The Netherlands.
authors.forename: J E
authors.initials: JE
authors.lastname: De Vries
authors.forename: F H
authors.initials: FH
authors.lastname: Kornips
authors.forename: J
authors.initials: J
authors.lastname: Wiegant
authors.forename: P M
authors.initials: PM
authors.lastname: Moerkerk
authors.forename: N
authors.initials: N
authors.lastname: Senden
authors.forename: B
authors.initials: B
authors.lastname: Schutte
authors.forename: J P
authors.initials: JP
authors.lastname: Geraedts
authors.forename: F T
authors.initials: FT
authors.lastname: Bosman
authors.forename: J
authors.initials: J
authors.lastname: Ten Kate
mesh_terms: D000818:Animals; D002460:Cell Line; D002871:Chromosome Banding; D002875:Chromosomes / Q000737:chemistry*; D004247:DNA / Q000032:analysis*; D005796:Genes; D016591:Histocytological Preparation Techniques; D008856:Microscopy, Fluorescence; D009693:Nucleic Acid Hybridization; D010957:Plasmids; D014162:Transfection
chemical_list: D004247:DNA