title: Determination of the molecular dynamics of alamethicin using 13C NMR: implications for the mechanism of gating of a voltage-dependent channel.
abstract: Alamethicin is a channel-forming peptide antibiotic that produces a highly voltage-dependent conductance in planar bilayers. To provide insight into the mechanisms for its voltage dependence, the dynamics of the peptide were examined in solution using nuclear magnetic resonance. Natural-abundance 13C spin-lattice relaxation rates and 13C-1H nuclear Overhauser effects of alamethicin were measured at two magnetic field strengths in methanol. This information was interpreted using a model-free approach to obtain values for the overall correlation times as well as the rates and amplitudes of the internal motions of the peptide. The picosecond, internal motions of alamethicin are highly restricted along the peptide backbone and indicate that it behaves as a rigid helical rod in solution. The side chain carbons exhibit increased segmental motion as their distance from the peptide backbone is increased; however, these motions are not unrestricted. Methyl group dynamics are also consistent with the restricted motions observed for the backbone carbons. There is no evidence from these dynamics measurements for a hinged motion of the peptide about proline-14. Alamethicin appears to be slightly less structured in methanol than in the membrane; as a result, alamethicin is also expected to behave as a rigid helix in the membrane. This suggests that the gating of this peptide involves changes in the orientation of the entire helix, rather than the movement of a segment of the peptide backbone.
authors.affiliation: Department of Chemistry, University of Virginia, Charlottesville 22901.
authors.forename: L P
authors.initials: LP
authors.lastname: Kelsh
authors.forename: J F
authors.initials: JF
authors.lastname: Ellena
authors.forename: D S
authors.initials: DS
authors.lastname: Cafiso
mesh_terms: D000408:Alamethicin / Q000737:chemistry* / Q000494:pharmacology; D002247:Carbon Isotopes; D015640:Ion Channel Gating; D009682:Magnetic Resonance Spectroscopy; D010449:Peptide Mapping; D011487:Protein Conformation; D012996:Solutions
chemical_list: D002247:Carbon Isotopes; D012996:Solutions; D000408:Alamethicin