title: Evaluation of aquatic sediment microcosms and their use in assessing possible effects of introduced microorganisms on ecosystem parameters.
abstract: In this paper we describe a sediment microcosm system consisting of 20 undisturbed, layered sediment cores with overlying site water which are incubated under identical conditions of temperature, light, stirring rate of overlying water, and water exchange rate. Ecosystem parameters (nutrient level, photosynthetic potential, community structure of heterotrophic bacteria, thymidine incorporation rate, and oxygen microgradients) of the laboratory microcosms and the source ecosystem were compared and shown to be indistinguishable for the first 2 weeks. In weeks 3 and 4, small differences were detectable in the nutrient level, community structure of heterotrophic bacteria, and thymidine incorporation rate. However, the photosynthetic potential, depth profiles of heterotrophic bacterial community structure, and oxygen microgradients were maintained throughout the incubation period and did not differ between laboratory microcosms and the source ecosystem. The microcosm system described here would thus appear to be a valid model of aquatic sediments for up to 4 weeks; the actual period would depend on the sediment source and incubation temperature. The validated systems were used with Rhine river sediment to assess possible effects on ecosystem parameters of Pseudomonas sp. strain B13 FR1(pFRC20P), a genetically engineered microorganism (GEM) that had been constructed to degrade mixtures of halo- and alkylbenzoates and -phenols. The GEM survived in the surface sediment at densities of 5 x 10(4) to 5 x 10(5)/g (dry weight) for 4 weeks and degraded added chloro- and methylaromatics. The GEM did not measurably influence ecosystem parameters such as photosynthesis, densities of selected heterotrophic bacteria, thymidine incorporation rate, and oxygen microgradients. Thus, the microcosm system described here would seem to be useful for the study of the ecology of biodegradation and the fate and effect of microorganisms introduced into the environment.
authors.affiliation: Molecular Microbial Ecology Group, Department of Microbiology, National Research Center for Biotechnology, Braunschweig, Germany.
authors.forename: I
authors.initials: I
authors.lastname: Wagner-Döbler
authors.forename: R
authors.initials: R
authors.lastname: Pipke
authors.forename: K N
authors.initials: KN
authors.lastname: Timmis
authors.forename: D F
authors.initials: DF
authors.lastname: Dwyer
mesh_terms: D001419:Bacteria / Q000302:isolation & purification / Q000378:metabolism; D001673:Biodegradation, Environmental; D002734:Chlorophyll / Q000378:metabolism; D000077194:Chlorophyll A; D003264:Containment of Biohazards; D004274:DNA, Recombinant; D004463:Ecology; D004785:Environmental Pollutants / Q000378:metabolism; D005069:Evaluation Studies as Topic; D006838:Hydrocarbons / Q000378:metabolism; D008954:Models, Biological; D011549:Pseudomonas / Q000235:genetics / Q000378:metabolism; D012988:Soil Microbiology
chemical_list: D004274:DNA, Recombinant; D004785:Environmental Pollutants; D006838:Hydrocarbons; D002734:Chlorophyll; D000077194:Chlorophyll A