title: Transfer RNA genes from Dictyostelium discoideum are frequently associated with repetitive elements and contain consensus boxes in their 5' and 3'-flanking regions.
abstract: A total of 68 different tRNA genes from the cellular slime mold Dictyostelium discoideum have been isolated and characterized. Although these tRNA genes show features common to typical nuclear tRNA genes from other organisms, several unique characteristics are apparent: (1) the 5'-proximal flanking region is very similar for most of the tRNA genes; (2) more than 80% of the tRNA genes contain an "ex-B motif" within their 3'-flanking region, which strongly resembles characteristics of the consensus sequence of a T-stem/T-loop region (B-box) of a tRNA gene; (3) probably more than 50% of the tRNA genes in certain D. discoideum strains are associated with a retrotransposon, termed DRE (Dictyostelium repetitive element), or with a transposon, termed Tdd-3 (Transposon Dictyostelium discoideum). DRE always occurs 50 (+/- 3) nucleotides upstream and Tdd-3 always occurs 100 (+/- 20) nucleotides downstream from the tRNA gene. D. discoideum tRNA genes are organized in multicopy gene families consisting of 5 to 20 individual genes. Members of a particular gene family are identical within the mature tRNA coding region while flanking sequences are idiosyncratic.
authors.affiliation: Institut für Biochemie, Medizinische Fakultät Universität Erlangen-Nürnberg, F.R.G.
authors.forename: J
authors.initials: J
authors.lastname: Hofmann
authors.forename: G
authors.initials: G
authors.lastname: Schumann
authors.forename: G
authors.initials: G
authors.lastname: Borschet
authors.forename: R
authors.initials: R
authors.lastname: Gösseringer
authors.forename: M
authors.initials: M
authors.lastname: Bach
authors.forename: W M
authors.initials: WM
authors.lastname: Bertling
authors.forename: R
authors.initials: R
authors.lastname: Marschalek
authors.forename: T
authors.initials: T
authors.lastname: Dingermann
mesh_terms: D000818:Animals; D001483:Base Sequence; D003062:Codon / Q000235:genetics; D004251:DNA Transposable Elements; D016054:DNA, Protozoan / Q000235:genetics; D004277:DNA, Single-Stranded; D004023:Dictyostelium / Q000235:genetics*; D005091:Exons; D007438:Introns; D008969:Molecular Sequence Data; D005810:Multigene Family; D012343:RNA, Transfer / Q000235:genetics*; D012045:Regulatory Sequences, Nucleic Acid / Q000235:genetics*; D012091:Repetitive Sequences, Nucleic Acid / Q000235:genetics*; D012689:Sequence Homology, Nucleic Acid
chemical_list: D003062:Codon; D004251:DNA Transposable Elements; D016054:DNA, Protozoan; D004277:DNA, Single-Stranded; D012343:RNA, Transfer