Effect of pre- and postmortem variables on specific mRNA levels in human brain.
The method of polymerase chain reaction was used to investigate the pre- and postmortem factors which affect the stability of specific mRNAs in the C1 region of human autopsy brain. Eight premortem and 4 postmortem factors were correlated to levels of phenylethanolamine N-methyltransferase (PNMT), three splice forms of amyloid precursor protein (APP) and actin mRNAs in 10 control brains using Pearson's correlation coefficient. Significant negative correlations were found between hypoxia and PNMT mRNA, and between postmortem and storage intervals and APP751 and beta-actin mRNAs. A positive correlation was found between death-refrigeration interval and total APP and APP695 mRNAs. There was also a positive correlation between seizure activity and APP770 mRNA. The results indicate that a variety of pre- and postmortem factors can affect mRNA levels. The possible effect of pre- and postmortem factors on specific mRNA levels should be investigated prior to comparing mRNA levels in different disease states.
Burke
W J
WJ
Department of Neurology, Veterans Administration Medical Center, St. Louis, MO.
O'Malley
K L
KL
Chung
H D
HD
Harmon
S K
SK
Miller
J P
JP
Berg
L
L
D000328:Adult; D000368:Aged; D001483:Base Sequence; D001921:Brain / Q000378:metabolism* / Q000473:pathology; D006801:Humans; D008297:Male; D008875:Middle Aged; D008969:Molecular Sequence Data; D009841:Oligonucleotides / Q000235:genetics; D016133:Polymerase Chain Reaction; D011180:Postmortem Changes; D012333:RNA, Messenger / Q000378:metabolism*
D009841:Oligonucleotides; D012333:RNA, Messenger