title: The pH dependence of cytochrome a conformation in cytochrome c oxidase.
abstract: The pH dependence of the conformation of cytochrome a in bovine cytochrome c oxidase has been studied by second derivative absorption spectroscopy. At neutral pH, the second derivative spectra of the cyanide-inhibited fully reduced and mixed valence enzyme display two Soret electronic transitions, at 443 and 451 nm, associated with cytochrome a. As the pH is lowered these two bands collapse into a single transition at approximately 444 nm. pH titration of the cyanide-inhibited mixed valence enzyme suggests that the transition from the two-band to one-band spectrum obeys the Henderson Hasselbalch relationship for a single protonation event with a transition pKa of 6.6 +/- 0.1. No pH dependence is observed for the spectra of the fully reduced unliganded or CO-inhibited enzyme. Tryptophan fluorescence spectra of the enzyme indicate that no major disruption of protein structure occurs in the pH range 5.5-8.5 used in this study. Resonance Raman spectroscopy indicates that the cytochrome a3 chromophore remains in its ferric, cyanide-bound form in the mixed valence enzyme throughout the pH range used here. These data indicate that the transition observed by second derivative spectroscopy is not due simply to pH-induced protein denaturation or disruption of the cytochrome a3 iron-CN bond. The pH dependence observed here is in good agreement with those observed earlier for the midpoint reduction potential of cytochrome a and for the conformational transition associated with energy transduction in the proton pumping model of Malmström (Malmström, B. G. (1990) Arch. Biochem. Biophys. 280, 233-241). These results are discussed in terms of a model for allosteric communication between cytochrome a and the binuclear ligand binding center of the enzyme that is mediated by ionization of a single group within the protein.
authors.affiliation: Department of Biochemistry and Molecular Biology, University of Chicago, Illinois 60637.
authors.forename: N
authors.initials: N
authors.lastname: Ishibe
authors.forename: S R
authors.initials: SR
authors.lastname: Lynch
authors.forename: R A
authors.initials: RA
authors.lastname: Copeland
mesh_terms: D000818:Animals; D002417:Cattle; D003486:Cyanides / Q000494:pharmacology; D017936:Cytochrome a Group; D003580:Cytochromes / Q000737:chemistry / Q000378:metabolism*; D003576:Electron Transport Complex IV / Q000302:isolation & purification / Q000378:metabolism*; D006863:Hydrogen-Ion Concentration; D011487:Protein Conformation; D013050:Spectrometry, Fluorescence; D013053:Spectrophotometry; D013059:Spectrum Analysis, Raman; D014364:Tryptophan
chemical_list: D003486:Cyanides; D017936:Cytochrome a Group; D003580:Cytochromes; D014364:Tryptophan; D003576:Electron Transport Complex IV