title: The BIME family of bacterial highly repetitive sequences.
abstract: Palindromic units (PU or REP) were initially defined as a DNA sequence of 40 nucleotides which is highly repeated in the genome of several enterobacteria and found in clusters of up to six copies. It appears now that PU belong to a larger repeated DNA element, of up to 300 nucleotides, called BIME for bacterial interspersed mosaic element. BIME is a mosaic combination of ten small DNA motifs, including the PU sequence. A central question concerning BIME is to determine whether they play a critical role within the cell. BIME exhibit only limited effects on local gene expression; it seems unlikely that these weak effects alone can account for the high BIME sequence homogeneity. It has recently been shown that DNA gyrase and DNA polymerase I are able to specifically recognize BIME DNA in vitro. These findings suggest that BIME could play a role in the functional organization of the bacterial nucleoid. Hypotheses on their origin and evolution are discussed.
authors.affiliation: Unité de Programmation Moléculaire et Toxicologie Génétique, CNRS UA271 INSERM U163, Institut Pasteur, Paris.
authors.forename: E
authors.initials: E
authors.lastname: Gilson
authors.forename: W
authors.initials: W
authors.lastname: Saurin
authors.forename: D
authors.initials: D
authors.lastname: Perrin
authors.forename: S
authors.initials: S
authors.lastname: Bachellier
authors.forename: M
authors.initials: M
authors.lastname: Hofnung
mesh_terms: D001483:Base Sequence; D001665:Binding Sites; D002874:Chromosome Mapping; D004256:DNA Polymerase I / Q000378:metabolism; D004250:DNA Topoisomerases, Type II / Q000378:metabolism; D004269:DNA, Bacterial / Q000235:genetics* / Q000378:metabolism; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism; D008969:Molecular Sequence Data; D009030:Mosaicism; D012091:Repetitive Sequences, Nucleic Acid
chemical_list: D004269:DNA, Bacterial; D004256:DNA Polymerase I; D004250:DNA Topoisomerases, Type II