title: Evolution of retroposons by acquisition or deletion of retrovirus-like genes.
abstract: The retroid family consists of all genetic elements that encode a potential reverse transcriptase (RT). Members of this family include a diversity of eukaryotic genetic elements (viruses, transposable elements, organelle introns, and plasmids) and the retrons of prokaryotes. Some retroid elements have, in addition to the RT gene, other genes in common with the retroviruses. On the basis of RT sequence similarity, the retroposon group is defined as the eukaryotic long interspersed nuclear elements, the transposable elements of (1) Drosophila melanogaster (I and F factors), (2) Trypanosoma brucei (ingi element), (3) Zea mays (Cin4), (4) Bombyx mori (R2Bm), and members of the group II introns and plasmids of yeast mitochondria. The data presented here elucidate the extent of the relationships between the retroposons and other retroid-family members. Protein-sequence alignment data demonstrate that subsets of the retroposons contain different assortments of retroviral-like genes. Sequence similarities can be detected between the capsid, protease, ribonuclease H, and integrase proteins of retroviruses and several retroposon sequences. The relationships among the retroposon capsid-like sequences are congruent with the RT sequence phylogeny. In contrast, the similarity between ribonuclease H sequences varies in different subbranches of the retroposon lineage. These data suggest that xenologous recombination (i.e., the replacement of a homologous resident gene by a homologous foreign gene) and/or independent gene assortment have played a role in the evolution of the retroposons.
authors.affiliation: Department of Ecology and Evolutionary Biology, University of California, Irvine 92717.
authors.forename: M A
authors.initials: MA
authors.lastname: McClure
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D005075:Biological Evolution; D002213:Capsid / Q000235:genetics; D002872:Chromosome Deletion; D004251:DNA Transposable Elements; D010450:Endopeptidases / Q000235:genetics; D005814:Genes, Viral; D008969:Molecular Sequence Data; D010802:Phylogeny; D012190:Retroviridae / Q000235:genetics*; D016914:Ribonuclease H / Q000235:genetics; D016415:Sequence Alignment
chemical_list: D004251:DNA Transposable Elements; D016914:Ribonuclease H; D010450:Endopeptidases