title: Rearrangement and junctional-site sequence analyses of T-cell receptor gamma genes in intestinal intraepithelial lymphocytes from murine athymic chimeras.
abstract: The molecular organization of rearranged T-cell receptor (TCR) gamma genes intraepithelial lymphocytes (IEL) was studied in athymic radiation chimeras and was compared with the organization of gamma gene rearrangements in IEL from thymus-bearing animals by polymerase chain reaction and by sequence analyses of DNA spanning the junction of the variable (V) and joining (J) genes. In both thymus-bearing mice and athymic chimeras, IEL V-J gamma-gene rearrangements occurred for V gamma 1.2, V gamma 2, and V gamma 5 but not for V gamma 3 or V gamma 4. Sequence analyses of cloned V-J polymerase chain reaction-amplified products indicated that in both thymus-bearing mice and athymic chimeras, rearrangement of V gamma 1.2 and V gamma 5 resulted in in-frame as well as out-of-frame genes, whereas nearly all V gamma 2 rearrangements were out of frame from either type of animal. V-segment nucleotide removal occurred in most V gamma 1.2, V gamma 2, and V gamma 5 rearrangements; J-segment nucleotide removal was common in V gamma 1.2 but not in V gamma 2 or V gamma 5 rearrangements. N-segment nucleotide insertions were present in V gamma 1.2, V gamma 2, and V gamma 5 IEL rearrangements in both thymus-bearing mice and athymic chimeras, resulting in a predominant in-frame sequence for V gamma 5 and a predominant out-of-frame sequence for V gamma 2 genes. These findings demonstrate that (i) TCR gamma-gene rearrangement occurs extrathymically in IEL, (ii) rearrangements of TCR gamma genes involve the same V gene regardless of thymus influence; and (iii) the thymus does not determine the degree to which functional or nonfunctional rearrangements occur in IEL.
authors.affiliation: Department of Biological Science, University of Tulsa, Oklahoma.
authors.forename: M
authors.initials: M
authors.lastname: Whetsell
authors.forename: R L
authors.initials: RL
authors.lastname: Mosley
authors.forename: L
authors.initials: L
authors.lastname: Whetsell
authors.forename: F V
authors.initials: FV
authors.lastname: Schaefer
authors.forename: K S
authors.initials: KS
authors.lastname: Miller
authors.forename: J R
authors.initials: JR
authors.lastname: Klein
mesh_terms: D000818:Animals; D001483:Base Sequence; D002678:Chimera / Q000235:genetics; D003001:Cloning, Molecular; D004247:DNA; D004251:DNA Transposable Elements; D004848:Epithelium / Q000276:immunology; D005434:Flow Cytometry; D015334:Gene Rearrangement, gamma-Chain T-Cell Antigen Receptor; D007422:Intestines / Q000276:immunology*; D051379:Mice; D008807:Mice, Inbred BALB C; D008810:Mice, Inbred C57BL; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D016692:Receptors, Antigen, T-Cell, gamma-delta / Q000235:genetics*; D013601:T-Lymphocytes / Q000378:metabolism*; D013934:Thymectomy; D013950:Thymus Gland / Q000502:physiology*
chemical_list: D004251:DNA Transposable Elements; D016692:Receptors, Antigen, T-Cell, gamma-delta; D004247:DNA