title: Preferential Y chromosomal location of TRIM, a novel transposable element of Drosophila miranda, obscura group.
abstract: We have isolated a novel transposable element from the Y chromosome of Drosophila miranda (obscura group) which shows an organization intermediate between that of typical retroviruses and the I factor of Drosophila melanogaster. The site of integration of this element, TRIM, is an inverted repeat. On the 5' side the central region of TRIM is bordered by a sequence homologous to the tRNA primer binding site (PBS) and on the 3' side by a sequence homologous to the polypurine tract (PPT). The 5' LTR (long terminal repeat) contains transcription signals, such as a TATA box and a polyadenylation sequence. Three long open reading frames (ORFs) are found within the central region of the transposon. ORF1 and ORF2 show amino acid homology to the I factor of D. melanogaster and to conserved amino acid residues of retroviral reverse transcriptases. When used as a probe for in situ hybridization the TRIM element labels about 25 euchromatic sites and the chromocenter in polytene nuclei of D. miranda females. In the chromosome complement of males the polytenized part of the Y chromosome shows about the same number of additional TRIM homologous elements. Thus, as a result of this enrichment of TRIM elements in the Y chromosome, the genomic size of the TRIM population in D. miranda males is approximately doubled.
authors.affiliation: Institut für Genetik und Mikrobiologie, Universität München, Federal Republic of Germany.
authors.forename: M
authors.initials: M
authors.lastname: Steinemann
authors.forename: S
authors.initials: S
authors.lastname: Steinemann
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D015139:Blotting, Southern; D002874:Chromosome Mapping; D004247:DNA; D004251:DNA Transposable Elements; D004330:Drosophila / Q000235:genetics*; D005260:Female; D005786:Gene Expression Regulation; D008297:Male; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D016366:Open Reading Frames; D011506:Proteins / Q000737:chemistry / Q000235:genetics; D015183:Restriction Mapping; D012190:Retroviridae / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D014998:Y Chromosome
chemical_list: D004251:DNA Transposable Elements; D011506:Proteins; D004247:DNA