A BASIC microcomputer program for prediction of B and T cell epitopes in proteins.
A BASIC microcomputer program (EPIPLOT) has been developed for predicting B and T cell antigenic sites in proteins from their primary structures. The program calculates and plots flexibility, hydrophilicity and antigenicity profiles using 13 different scales, chosen as those yielding the best predictions on proteins whose antigenic structures are known. T cell epitope prediction is based on published algorithms focused on amphiphilic structures and characteristic sequence patterns. The advantages of joint predictions in locating T cell antigenic sites are also discussed.
Departamento de Bioquímica y Biología Molecular I, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain.
L
L
Menéndez-Arias
R
R
Rodríguez
D000465:Algorithms; D000595:Amino Acid Sequence; D001402:B-Lymphocytes / Q000276:immunology; D000939:Epitopes; D006801:Humans; D008214:Lymphocytes / Q000276:immunology*; D008838:Microcomputers; D008969:Molecular Sequence Data; D011487:Protein Conformation; D011506:Proteins / Q000276:immunology*; D012984:Software; D013601:T-Lymphocytes / Q000276:immunology
D000939:Epitopes; D011506:Proteins