title: Structural analyses of a channel-forming fragment of colicin E1 incorporated into lipid vesicles. Fourier-transform infrared and tryptophan fluorescence studies.
abstract: Structural changes upon binding to the membrane of a COOH-terminal channel-forming thermolytic fragment of colicin E1 have been studied by means of a variety of spectroscopic techniques. Circular dichroism measurements show that the thermolytic fragment predominantly takes a helical structure in aqueous and detergent solutions. Fourier transform infrared spectroscopic measurements indicate that the content of the beta-structure is significantly increased when the thermolytic fragment is bound to vesicles. On the basis of the result of tryptophan fluorescence measurements, we have concluded that each of the three tryptophan residues of the thermolytic fragment exists in different environments, i.e. one is buried in the lipid bilayer, one exists on the cis side of the vesicles, and one exists near the surface of the lipid bilayer. The Fourier transform infrared and fluorescence data have been used along with the crystal structure of colicin A, which is highly homologous to colicin E1 in structure and function, to propose a model of the thermolytic fragment bound to the lipid vesicles.
authors.affiliation: Faculty of Pharmaceutical Sciences, University of Tokyo, Japan.
authors.forename: H
authors.initials: H
authors.lastname: Suga
authors.forename: K
authors.initials: K
authors.lastname: Shirabe
authors.forename: T
authors.initials: T
authors.lastname: Yamamoto
authors.forename: M
authors.initials: M
authors.lastname: Tasumi
authors.forename: M
authors.initials: M
authors.lastname: Umeda
authors.forename: C
authors.initials: C
authors.lastname: Nishimura
authors.forename: A
authors.initials: A
authors.lastname: Nakazawa
authors.forename: M
authors.initials: M
authors.lastname: Nakanishi
authors.forename: Y
authors.initials: Y
authors.lastname: Arata
mesh_terms: D000595:Amino Acid Sequence; D002942:Circular Dichroism; D003087:Colicins / Q000737:chemistry*; D004735:Energy Transfer; D005583:Fourier Analysis; D006863:Hydrogen-Ion Concentration; D007473:Ion Channels / Q000502:physiology*; D008563:Membrane Lipids; D008565:Membrane Proteins / Q000737:chemistry; D008969:Molecular Sequence Data; D010446:Peptide Fragments; D011487:Protein Conformation; D011721:Pyrenes / Q000737:chemistry; D013050:Spectrometry, Fluorescence; D013055:Spectrophotometry, Infrared; D013820:Thermolysin; D014364:Tryptophan / Q000737:chemistry
chemical_list: D003087:Colicins; D007473:Ion Channels; D008563:Membrane Lipids; D008565:Membrane Proteins; D010446:Peptide Fragments; D011721:Pyrenes; D014364:Tryptophan; D013820:Thermolysin