title: Novel anticodon composition of transfer RNAs in Micrococcus luteus, a bacterium with a high genomic G + C content. Correlation with codon usage.
abstract: The number and relative amount of isoacceptor tRNAs for each amino acid in Micrococcus luteus, a Gram-positive bacterium with high genomic G + C content, have been determined by sequencing their anticodon loop and its adjacent regions and by selective labelling of tRNAs. Thirty-one tRNA species with 29 different anticodon sequences have been detected. All the tRNAs have G or C at the anticodon first position except for tRNA(ICGArg) and tRNA(NGASer), in response to the abundant usage of NNC and NNG codons. No tRNA with the anticodon UNN capable of translating codon NNA has been detected, in accordance with a very low or zero usage of NNA codons. The relative amount of isoacceptor tRNAs for an amino acid determined by selective labelling strongly correlates with usage of the corresponding codons. On the basis of these and other observations in this and other eubacterial species, we conclude that the relative amount and anticodon composition of isoacceptor tRNA species are flexible, and their changes are mainly adaptive phenomena that have been primarily affected by codon usage, which in turn is affected by directional mutation pressure.
authors.affiliation: Department of Biology, School of Science, Nagoya University, Japan.
authors.forename: A
authors.initials: A
authors.lastname: Kano
authors.forename: Y
authors.initials: Y
authors.lastname: Andachi
authors.forename: T
authors.initials: T
authors.lastname: Ohama
authors.forename: S
authors.initials: S
authors.lastname: Osawa
mesh_terms: D000926:Anticodon / Q000737:chemistry*; D001482:Base Composition; D001483:Base Sequence; D003062:Codon; D003596:Cytosine / Q000737:chemistry*; D006151:Guanosine / Q000737:chemistry*; D016982:Micrococcus luteus / Q000737:chemistry / Q000235:genetics*; D008969:Molecular Sequence Data; D009154:Mutation; D012329:RNA, Bacterial / Q000737:chemistry / Q000235:genetics; D012345:RNA, Transfer, Amino Acid-Specific / Q000737:chemistry* / Q000235:genetics
chemical_list: D000926:Anticodon; D003062:Codon; D012329:RNA, Bacterial; D012345:RNA, Transfer, Amino Acid-Specific; D006151:Guanosine; D003596:Cytosine