title: COSMIC(90): an improved molecular mechanics treatment of hydrocarbons and conjugated systems.
abstract: Four modifications to the COSMIC molecular mechanics force field are described, which greatly increase both its versatility and the accuracy of calculated conformational energies. The Hill non-bonded van der Waals potential function has been replaced by a two-parameter Morse curve and a new H-H potential, similar to that in MM3, incorporated. Hydrocarbon energies in particular are much improved. A simple iterative Hückel pi-electron molecular orbital calculation allows modelling of conjugated systems. Calculated bond lengths and rotational barriers for a series of conjugated hydrocarbons and nitrogen heterocycles are shown to be as accurate as those determined by the MM2 SCF method. Explicit hydrogen-bonding potentials for H-bond acceptor-donor atom pairs have been included to give better hydrogen bond energies and lengths. The van der Waals radii of protonic hydrogens are reduced to 0.5 A and the energy well depth is increased to 1.0 kcal mol-1. Two new general atom types, N+sp2 and O-sp3, have been introduced which allow a wide variety of charged conjugated systems to be studied. A minimum of parameterisation is required, as the new types are easily included in the Hückel scheme which automatically adjusts bond and torsional parameters according to the defined bond-order relationships.
authors.affiliation: Department of Pharmaceutical Sciences, University of Nottingham, University Park, U.K.
authors.forename: S D
authors.initials: SD
authors.lastname: Morley
authors.forename: R J
authors.initials: RJ
authors.lastname: Abraham
authors.forename: I S
authors.initials: IS
authors.lastname: Haworth
authors.forename: D E
authors.initials: DE
authors.lastname: Jackson
authors.forename: M R
authors.initials: MR
authors.lastname: Saunders
authors.forename: J G
authors.initials: JG
authors.lastname: Vinter
mesh_terms: D003198:Computer Simulation; D006838:Hydrocarbons / Q000737:chemistry*; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D015394:Molecular Structure; D013816:Thermodynamics
chemical_list: D006838:Hydrocarbons