title: Improved AMYR program: an algorithm for the theoretical simulation of molecular associations, including geometrical and topological characterization of the dimers.
abstract: Program AMYR, originally written by S. Fraga (University of Alberta, Canada), allows for the calculation of molecular associations using a pair-wise atom-atom potential. The interaction energy is evaluated through a 1/R expansion. Our improved version includes a dispersion energy term in the potential corrected by damping functions, the possibility of carrying out energy minimizations through variable metric methods, as well as the optional calculation of geometrical and topological indices. Program AMYR has been adapted also for high-performance computing and vectorization. An interactive version of the program carries out real-time molecular graphics showing simultaneously the energy profile of the calculations.
authors.affiliation: Departament de Química Física, Facultat de Química, Universitat de València, Spain.
authors.forename: F
authors.initials: F
authors.lastname: Torrens
authors.forename: E
authors.initials: E
authors.lastname: Ortí
authors.forename: J
authors.initials: J
authors.lastname: Sánchez-Marín
mesh_terms: D000465:Algorithms; D001386:Azides / Q000737:chemistry; D001554:Benzene / Q000737:chemistry; D007211:Indoles / Q000737:chemistry; D054833:Isoindoles; D008958:Models, Molecular
chemical_list: D001386:Azides; D007211:Indoles; D054833:Isoindoles; D001554:Benzene; C013647:phthalocyanine