[The task of determining the local structure of proteins by Overhauser effect nuclear spectroscopy addressed once more].
The testing of the earlier developed theoretical method for determining the backbone protein conformations (the local structure) on the basis of the two-dimensional nuclear Overhauser effect (NOE) spectroscopy has been fulfilled. The method approval has been carried out by the calculation (based upon spectral NOE parameters) of the local plastocyanin and bovine pancreatic trypsin inhibitor structures followed by the comparison of the received conformational parameters with the X-ray data. The comparison of the molecular conformations in solution and crystal has been implemented for different fragments of the polypeptide chain (beta-structures, alpha-helices, irregular segments) using the mathematical statistics methods. The verification of the "zero" hypothesis about the similarity of phi and psi variation rows which was carried out at the reliability level of 0.99 showed that in both cases there were no systematic deviations of dihedral angles of the compared conformations and that their dispersion differences were statistically indiscernible. It has been concluded that the approved method permits to determine the local structure of the conformationally rigid proteins (or their fragments) at the level close to that which provides the high resolution X-ray analysis.
Andrianov
A M
AM
D000595:Amino Acid Sequence; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D010970:Plastocyanin / Q000235:genetics; D011487:Protein Conformation; D011506:Proteins / Q000235:genetics*; D014361:Trypsin Inhibitors / Q000235:genetics
D011506:Proteins; D014361:Trypsin Inhibitors; D010970:Plastocyanin
Eshche raz o zadachye opredeleniia lokal'noĭ struktury belkov po dannym spektroskopii iadernogo éffekta overkhauzera.