title: Conformation of the glucotriose unit in the lipid-linked oligosaccharide precursor for protein glycosylation.
abstract: The conformation of the glucotriose unit of the protein glycosylation precursor Glc3Man9GlcNAc2 was assessed by deuterium exchange studies on the model tetrasaccharide alpha Glc----2 alpha Glc----3 alpha Glc----3 alpha Man----OCH2CH2CH3 dissolved in deuterated dimethyl sulfoxide. The hydroxyl proton on C-2 of the nonreducing end glucose and on C-4 of the glucose attached to mannose both show dramatic isotope shifts indicative of a strong hydrogen bond between these two hydroxyl groups. Such a hydrogen bond requires a fixed conformation of the glucotriose unit that brings these hydroxyl groups within 3 A of each other, a conformation that is supported by molecular modeling based on hard-sphere exo-anomeric (HSEA) calculations. The temperature dependence of the hydroxyl proton chemical shifts supports the postulated hydrogen bond, and the torsional angles between the three glucose units derived from the HSEA calculations are consistent with results from related studies on other saccharides. The results support a model for biochemical function in which the glucotriose unit could modulate the activity of the oligosaccharyltransferase by binding in a fixed conformation to a specific effector site in the enzyme.
authors.affiliation: Division of Biochemistry and Molecular Biology, University of California, Berkeley 94720.
authors.forename: E
authors.initials: E
authors.lastname: Alvarado
authors.forename: T
authors.initials: T
authors.lastname: Nukada
authors.forename: T
authors.initials: T
authors.lastname: Ogawa
authors.forename: C E
authors.initials: CE
authors.lastname: Ballou
mesh_terms: D001665:Binding Sites; D002236:Carbohydrate Conformation; D002240:Carbohydrate Sequence; D003903:Deuterium; D004121:Dimethyl Sulfoxide; D005947:Glucose / Q000737:chemistry; D006031:Glycosylation; D006602:Hexosyltransferases; D006860:Hydrogen Bonding; D006878:Hydroxides / Q000737:chemistry; D017665:Hydroxyl Radical; D008070:Lipopolysaccharides / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D008565:Membrane Proteins; D008958:Models, Molecular; D008969:Molecular Sequence Data; D014166:Transferases / Q000378:metabolism*; D014306:Trioses / Q000737:chemistry*
chemical_list: D006878:Hydroxides; D008070:Lipopolysaccharides; D008565:Membrane Proteins; D014306:Trioses; C023023:lipid-linked oligosaccharides; D017665:Hydroxyl Radical; D003903:Deuterium; D014166:Transferases; D006602:Hexosyltransferases; C025620:dolichyl-diphosphooligosaccharide - protein glycotransferase; D005947:Glucose; D004121:Dimethyl Sulfoxide