Time-resolved fluorescence emission and excitation spectroscopy of d(TA) and d(AT) using synchrotron radiation.
The photophysics of the sequence isomers d(TA) and d(AT) has been investigated at room temperature in 5 x 10(-5) M neutral aqueous solution using pulsed ultraviolet excitation from the ACO synchrotron and detection by time correlation or gated single-photon counting. Decay profiles of the emissions at 350, 400 and 460 have been analyzed both independently and globally by reiterative non-linear least-squares fitting to models of two and three independently emitting species. No evidence has been observed for excited-state reaction. Time-windowed spectra, both emission and excitation, have been collected for three time windows and have been deconvoluted to give time-resolved spectra using the lifetimes resulting from the decay analyses. Spectra are separated into two classes, with picosecond and nanosecond lifetimes, respectively. The picosecond spectra have the emission and excitation spectral characteristics of mixed monomer (A and T) fluorescences and are assigned as originating from the unstacked fractions of d(TA) and d(AT). The nanosecond emission spectra from d(TA) and d(AT) are both two-component, with lambda max approximately 350 and approximately 425 nm and lifetimes of 2.3 and 6.1 ns, respectively. The time-resolved excitation spectra for the nanosecond emissions are quite different from the isotropic absorption spectra of d(TA) and d(AT) but correlate with the anisotropic absorption for out-of-plane transitions between stacked bases of co-crystals of 9-methyladenine and 1-methylthymine reported by Stewart and Davidson. The nanosecond spectra thus represent the direct excitation and emission of stacked pairs of bases. These results provide no evidence for energy transfer and are probably related to sequence-specific photo-adduct formation.
Ballini
J P
JP
Laboratoire de Physique et Chimie Biomoléculaire (CNRS UA 198), Institut Curie et Université Paris VI, France.
Daniels
M
M
Vigny
P
P
D015226:Dinucleoside Phosphates; D007536:Isomerism; D007700:Kinetics; D009838:Oligodeoxyribonucleotides / Q000009:adverse effects / Q000737:chemistry*; D010315:Particle Accelerators; D013050:Spectrometry, Fluorescence; D013052:Spectrometry, X-Ray Emission
D015226:Dinucleoside Phosphates; D009838:Oligodeoxyribonucleotides; C028145:2'-deoxythymidylyl-(3'-5')-2'-deoxyadenosine; C042899:deoxythymidylyl-3'-5'-deoxyadenylate