title: Three-dimensional structural analysis of the group B polysaccharide of Neisseria meningitidis 6275 by two-dimensional NMR: the polysaccharide is suggested to exist in helical conformations in solution.
abstract: The solution conformations of the group B polysaccharide of Neisseria meningitidis were analyzed by DQF-COSY and pure absorption 2D NOE NMR with three mixing times. The pyranose ring of the sialic acid residue was found to be in the 2C5 conformation. The DQF-COSY analysis indicated that the orientations of H6 and H7 and of H7 and H8 are both gauche. In order to overcome the difficulties in analyzing the NOE data due to the two sets of proton overlaps, molecular modeling of alpha-2,8-linked sialic acid oligomers was carried out to investigate possible conformers, and theoretical NOE calculations were performed by using CORMA (complete relaxation matrix analysis). Our analysis suggests that the polysaccharide adopts helical structures for which the phi (defined by O6-C2-O8-C8) and psi (C2-O8-C8-C7) angles are in the following ranges: phi -60 to 0 degrees, psi 115-175 degrees or phi 90-120 degrees, psi 55-175 degrees. The weak affinity of anti-B antibodies for smaller alpha-2,8-linked oligosaccharides may be due to the fact that such oligomers are more flexible and may not form an ordered structure as the poly(sialic acid) does.
authors.affiliation: Department of Laboratory Medicine, University of California, San Francisco.
authors.forename: R
authors.initials: R
authors.lastname: Yamasaki
authors.forename: B
authors.initials: B
authors.lastname: Bacon
mesh_terms: D000942:Antigens, Bacterial / Q000032:analysis*; D016667:Bacterial Capsules; D003196:Computer Graphics; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D009345:Neisseria meningitidis / Q000276:immunology*; D011135:Polysaccharides, Bacterial / Q000737:chemistry* / Q000276:immunology; D011487:Protein Conformation; D013237:Stereoisomerism
chemical_list: D000942:Antigens, Bacterial; D011135:Polysaccharides, Bacterial; C039455:capsular polysaccharide, meningococcal group B