title: Motion of aromatic side chains, picosecond fluorescence, and internal energy transfer in Escherichia coli thioredoxin studied by site-directed mutagenesis, time-resolved fluorescence spectroscopy, and molecular dynamics simulations.
abstract: We have determined the picosecond fluorescence of the four aromatic amino acid residues (W28, W31, Y49, and Y70) in wild-type Escherichia coli thioredoxin (wt Trx) and a mutant Trx with W31 replaced by phenylalanine, Trx-W28-W31F. The internal motions of the four aromatic side chains were also analyzed. We examined the possibility of using internal energy transfer from tyrosine to tryptophan as a measure of long-range distances. The major features of the lifetime distribution of tryptophan fluorescence were unchanged in the W31F mutation, indicating that the environment of W28 is similar in both wt Trx and Trx-W28-W31F. However, the mutation of W31F changed the mobility of W28, situated close to the active-site disulfide/dithiol, but not the mobility of two tyrosines, Y49 and Y70, situated on the other side of the molecule. The mobility of the two tyrosine residues increased upon reduction of the active-site disulfide, indicating a looser structure with reduction. This increased motion could also be seen from molecular dynamics simulations. The change in energy transfer rates, as judged by tyrosine fluorescence lifetimes, was in agreement with energy transfer rates calculated from the molecular dynamics simulations. The anisotropy of tryptophan and tyrosine fluorescence could be separated in three parts: (I) overall rotation of the protein (10(-9)s), (II) internal mobility of side chains (10(-10)s), and (III) a very fast relaxation (10(-12)s). We can only experimentally detect this very fast relaxation when the internal motion is not present.
authors.affiliation: Department of Medical Biophysics, Karolinska Institutet, Stockholm, Sweden.
authors.forename: A
authors.initials: A
authors.lastname: Elofsson
authors.forename: R
authors.initials: R
authors.lastname: Rigler
authors.forename: L
authors.initials: L
authors.lastname: Nilsson
authors.forename: J
authors.initials: J
authors.lastname: Roslund
authors.forename: G
authors.initials: G
authors.lastname: Krause
authors.forename: A
authors.initials: A
authors.lastname: Holmgren
mesh_terms: D000596:Amino Acids / Q000737:chemistry*; D004220:Disulfides / Q000737:chemistry; D004735:Energy Transfer; D004926:Escherichia coli / Q000737:chemistry*; D005454:Fluorescence Polarization; D006860:Hydrogen Bonding; D016297:Mutagenesis, Site-Directed; D010649:Phenylalanine / Q000235:genetics; D011487:Protein Conformation; D013329:Structure-Activity Relationship; D013879:Thioredoxins / Q000737:chemistry* / Q000235:genetics; D014364:Tryptophan / Q000737:chemistry; D014443:Tyrosine / Q000737:chemistry; D014961:X-Ray Diffraction
chemical_list: D000596:Amino Acids; D004220:Disulfides; D014443:Tyrosine; D010649:Phenylalanine; D013879:Thioredoxins; D014364:Tryptophan