Computational analysis of conformational behavior of cholecystokinin fragments. I-CCK4, CCK5, CCK6 and CCK7 molecules.
A conformational analysis has been performed on several peptide fragments (CCK4 to CCK7) of the cholecystokinin neuromodulator. The Monte-Carlo Metropolis method was used to explore the conformational space of all these flexible units and different electric charge distributions were introduced in order to mimic pH effects. Results agree reasonably well with experimental data from NMR and fluorescence experiments. The CCK4 fragment displays a peculiar conformational behavior when compared to all other longer peptides with short range interaction between the Trp and Phe aromatic side-chains. Several H-bonded conformers including C- or beta-turns are found for CCK5 to CCK7. These findings are correlated to the central and peripheral actions of these compounds and hypotheses concerning the best possible templates for each one are discussed.
Laboratory of Information Molecules, Synthesis Applications, U.A. CNRS 490, University L. Pasteur, Strasbourg, France.
D
D
Pattou
B
B
Maigret
M C
MC
Fournie-Zaluski
B P
BP
Roques
D000595:Amino Acid Sequence; D002766:Cholecystokinin / Q000737:chemistry*; D004734:Energy Metabolism; D008969:Molecular Sequence Data; D009010:Monte Carlo Method; D010446:Peptide Fragments / Q000737:chemistry*; D011487:Protein Conformation; D012984:Software
D010446:Peptide Fragments; D002766:Cholecystokinin