title: Substitution of glutamine for lysine at the pyridoxal phosphate binding site of bacterial D-amino acid transaminase. Effects of exogenous amines on the slow formation of intermediates.
abstract: In bacterial D-amino acid transaminase, Lys-145, which binds the coenzyme pyridoxal 5'-phosphate in Schiff base linkage, was changed to Gln-145 by site-directed mutagenesis (K145Q). The mutant enzyme had 0.015% the activity of the wild-type enzyme and was capable of forming a Schiff base with D-alanine; this external aldimine was formed over a period of minutes depending upon the D-alanine concentration. The transformation of the pyridoxal-5'-phosphate form of the enzyme to the pyridoxamine-5'-phosphate form (i.e. the half-reaction of transamination) occurred over a period of hours with this mutant enzyme. Thus, information on these two steps in the reaction and on the factors that influence them can readily be obtained with this mutant enzyme. In contrast, these reactions with the wild-type enzyme occur at much faster rates and are not easily studied separately. The mutant enzyme shows distinct preference for D- over L-alanine as substrates but it does so about 50-fold less effectively than the wild-type enzyme. Thus, Lys-145 probably acts in concert with the coenzyme and other functional side chain(s) to lead to efficient and stereochemically precise transamination in the wild-type enzyme. The addition of exogenous amines, ethanolamine or methyl amine, increased the rate of external aldimine formation with D-alanine and the mutant enzyme but the subsequent transformation to the pyridoxamine-5'-phosphate form of the enzyme was unaffected by exogenous amines. The wild-type enzyme displayed a large negative trough in the circular dichroic spectrum at 420 nm, which was practically absent in the mutant enzyme. However, addition of D-alanine to the mutant enzyme generated this negative Cotton effect (due to formation of the external aldimine with D-alanine). This circular dichroism band gradually collapsed in parallel with the transformation to the pyridoxamine-5'-phosphate enzyme. Further studies on this mutant enzyme, which displays the characteristics of the wild-type enzyme but at attenuated rates, may yield information on the factors controlling the stereochemistry of the reaction as well as on the catalytic steps of the transaminase pathway.
authors: Rockefeller University, New York, New York 10021.
authors: S
authors: S
authors: Futaki
authors: H
authors: H
authors: Ueno
authors: A
authors: A
authors: Martinez del Pozo
authors: M A
authors: MA
authors: Pospischil
authors: J M
authors: JM
authors: Manning
authors: D
authors: D
authors: Ringe
authors: B
authors: B
authors: Stoddard
authors: K
authors: K
authors: Tanizawa
authors: T
authors: T
authors: Yoshimura
authors: K
authors: K
authors: Soda
mesh_terms: D001483:Base Sequence; D001665:Binding Sites; D002942:Circular Dichroism; D051263:D-Alanine Transaminase; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics; D005973:Glutamine; D007700:Kinetics; D008239:Lysine; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D015345:Oligonucleotide Probes; D011487:Protein Conformation; D011732:Pyridoxal Phosphate / Q000378:metabolism*; D011994:Recombinant Proteins / Q000302:isolation & purification / Q000378:metabolism; D013053:Spectrophotometry; D000637:Transaminases / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*
chemical_list: D015345:Oligonucleotide Probes; D011994:Recombinant Proteins; D005973:Glutamine; D011732:Pyridoxal Phosphate; D000637:Transaminases; D051263:D-Alanine Transaminase; D008239:Lysine