Prediction of oligonucleotide frequencies based upon dinucleotide frequencies obtained from the nearest neighbor analysis.
A statistical method of predicting hexanucleotide frequencies is presented. The method requires dinucleotide frequencies which can be readily obtained by nearest neighbor analysis. The frequencies of 64 hexanucleotides of E. coli were estimated and compared well with those predicted by a third order Markov chain.
Hong
J
J
Biochemical Engineering Program, School of Engineering, University of California, Irvine 92717.
D000818:Animals; D001483:Base Sequence; D006224:Cricetinae; D004262:DNA Restriction Enzymes; D015226:Dinucleoside Phosphates; D004926:Escherichia coli / Q000235:genetics*; D006801:Humans; D008969:Molecular Sequence Data; D009838:Oligodeoxyribonucleotides; D011336:Probability
D015226:Dinucleoside Phosphates; D009838:Oligodeoxyribonucleotides; D004262:DNA Restriction Enzymes