title: The NF-kappa B transcription factor induces DNA bending which is modulated by its 65-kD subunit.
abstract: This study describes a novel functional property of the eukaryotic transcription factor NF-kappa B in altering the DNA structure. We observed that the binding of purified NF-kappa B to DNA was facilitated by spermine and cations which are known to promote DNA bending, and by a nick in one position at the 3'-end of the binding site. Furthermore, the position of the NF-kappa B binding sequence 5'-GGGACTTTCC-3' (kappa B motif) within circularly permutated DNA fragments had a profound influence on the mobility of NF-kappa B-DNA complexes in a gel retardation assay while the mobility of unbound DNA fragments did not depend on the position of the kappa B motif. The mobility effect was slightly reduced at increased temperature. These observations suggested that binding of NF-kappa B to DNA induces bending. The estimated bending angle induced by the 50-kD DNA binding subunit of NF-kappa B (p50) was smaller than that induced by p50 which was associated with the 65-kD non-DNA binding subunit (p65). Moreover, the presence of p65 appeared to result in a shift of the bending center from the middle towards the 3'-end of the kappa B motif. This shows a role for the p65 subunit of NF-kappa B in modulating the extent and altering the position of protein-induced DNA bending.
authors.affiliation: Laboratorium für Molekulare Biologie, Ludwig-Maximilians-Universität München, FRG.
authors.forename: R
authors.initials: R
authors.lastname: Schreck
authors.forename: H
authors.initials: H
authors.lastname: Zorbas
authors.forename: E L
authors.initials: EL
authors.lastname: Winnacker
authors.forename: P A
authors.initials: PA
authors.lastname: Baeuerle
mesh_terms: D000818:Animals; D001483:Base Sequence; D001665:Binding Sites; D004247:DNA / Q000737:chemistry* / Q000378:metabolism; D004249:DNA Damage; D006878:Hydroxides; D017665:Hydroxyl Radical; D008670:Metals / Q000494:pharmacology; D051379:Mice; D008969:Molecular Sequence Data; D008970:Molecular Weight; D016328:NF-kappa B / Q000502:physiology*; D009690:Nucleic Acid Conformation / Q000187:drug effects; D009757:Nylons / Q000494:pharmacology
chemical_list: D006878:Hydroxides; D008670:Metals; D016328:NF-kappa B; D009757:Nylons; D017665:Hydroxyl Radical; D004247:DNA