Structural features of the protoporphyrin-apomyoglobin complex: a proton NMR spectroscopy study.
The structural properties of the complex formed by apomyoglobin and protoporphyrin IX (des-iron myoglobin) were studied to probe the influence of iron-to-histidine coordination on the native myoglobin fold and the heme binding site geometry. Standard two-dimensional proton nuclear magnetic resonance spectroscopy methods were applied to identify porphyrin and protein signals. A pronounced spectral resemblance between carbonmonoxymyoglobin and des-iron myoglobin was noticed that could be exploited to assign a number of resonances by nuclear Overhauser spectroscopy. Protoporphyrin IX was determined to bind in the same orientation as the heme. Most residues in contact with the prosthetic group were found in the holomyoglobin conformation. Several tertiary structure features were also characterized near the protein termini. It was concluded that the protoporphyrin-apomyoglobin interactions are capable of organizing the binding site and the unfolded region of the apoprotein into the native holoprotein structure.
Lecomte
J T
JT
Department of Chemistry, Pennsylvania State University, University Park 16802.
Cocco
M J
MJ
D000595:Amino Acid Sequence; D000818:Animals; D001059:Apoproteins / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D006639:Histidine; D006736:Horses; D006859:Hydrogen; D007501:Iron; D009682:Magnetic Resonance Spectroscopy / Q000379:methods; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009211:Myoglobin / Q000737:chemistry / Q000378:metabolism*; D011485:Protein Binding; D011487:Protein Conformation; D011522:Protons; D011524:Protoporphyrins / Q000737:chemistry / Q000378:metabolism*; D014907:Whales; D014961:X-Ray Diffraction
D001059:Apoproteins; D009211:Myoglobin; D011522:Protons; D011524:Protoporphyrins; C010857:apomyoglobin; D006639:Histidine; D006859:Hydrogen; C028025:protoporphyrin IX; D007501:Iron