The interaction between aminoacyl-tRNA and the mutant elongation factors Tu AR and B0.
The binding of Tyr-[AEDANS-s2C]tRNA(Tyr) (Tyr-tRNA(Tyr) modified at the penultimate cytidine residue with a thio group at position 2 of the pyrimidine ring, to which an N-(acetylaminoethyl)-5-naphthylamine-1-sulfonic acid fluorescence group is attached) to mutant elongation factor (EF)-Tu species from E. coli, EF-TuAR (Ala-375----Thr) and EF-TuBO (Gly-222----Asp), both complexed to GTP, was investigated in absence of kirromycin by measuring the change in fluorescence of the modified tRNA induced by complex formation. The calculated dissociation constant in the case of EF-TuAR is about 4 nM and in the case of EF-TuB0, about 1 nM. These values are higher than that of wild-type EF-Tu, which was 0.24 nM measured with the same system. The affinity between either EF-TuB0.kirromycin.GDP or EF-TuB0.kirromycin.GTP on the one hand, and a mixture of aminoacyl-tRNAs on the other, was measured with zone-interference gel electrophoresis. The dissociation constants are 20 microM and 7 microM, respectively, a factor of about two higher than in the case of wild-type EF-Tu.kirromycin. These findings provide a clue for the observed increase in translational errors in strains carrying the mutations. Furthermore, the experiments with EF-TuB0.kirromycin deepen our understanding of the effects of the B0 mutation on the kirromycin phenotype of the mutant cells concerned.
Abrahams
J P
JP
Department of Biochemistry, Leiden University, The Netherlands.
Acampo
J J
JJ
Ott
G
G
Sprinzl
M
M
de Graaf
J M
JM
Talens
A
A
Kraal
B
B
D000900:Anti-Bacterial Agents / Q000378:metabolism; D004926:Escherichia coli / Q000378:metabolism; D005456:Fluorescent Dyes; D006153:Guanosine Diphosphate / Q000378:metabolism; D006160:Guanosine Triphosphate / Q000378:metabolism; D007700:Kinetics; D009154:Mutation; D009282:Naphthalenesulfonates / Q000378:metabolism*; D010444:Peptide Elongation Factor Tu / Q000235:genetics / Q000378:metabolism*; D011728:Pyridones / Q000378:metabolism; D012365:RNA, Transfer, Tyr / Q000378:metabolism*; D013329:Structure-Activity Relationship; D013438:Sulfhydryl Compounds / Q000378:metabolism*
D000900:Anti-Bacterial Agents; D005456:Fluorescent Dyes; D009282:Naphthalenesulfonates; D011728:Pyridones; D012365:RNA, Transfer, Tyr; D013438:Sulfhydryl Compounds; D006153:Guanosine Diphosphate; D006160:Guanosine Triphosphate; D010444:Peptide Elongation Factor Tu; C008536:mocimycin