Prediction of the conformation of D1/D2 heterodimer of photosynthetic reaction centre II using a modified Chou-Fasman method.
Chou-Fasman method was modified to account for amphipathic nature of Gly and hydrophobic environment. The modified method shows improvement in prediction accuracy from 35 to 70% and can be applied to predict the conformation of D1, D2 polypeptides of reaction centre II of thylakoid, which are analogous to L and M respectively. Possible sites for Mn binding to D1/D2 heterodimer are postulated.
Rawal
R K
RK
Department of Chemistry, G.M. College, Sambalpur, Orissa, India.
Raval
M K
MK
D000596:Amino Acids; D001426:Bacterial Proteins; D002734:Chlorophyll; D045342:Light-Harvesting Protein Complexes; D008958:Models, Molecular; D015233:Models, Statistical; D045322:Photosynthetic Reaction Center Complex Proteins; D010940:Plant Proteins; D011487:Protein Conformation
D000596:Amino Acids; D001426:Bacterial Proteins; D045342:Light-Harvesting Protein Complexes; D045322:Photosynthetic Reaction Center Complex Proteins; D010940:Plant Proteins; D002734:Chlorophyll