title: Sequence-specific interaction of Tat protein and Tat peptides with the transactivation-responsive sequence element of human immunodeficiency virus type 1 in vitro.
abstract: Bacterially expressed Tat protein of human immunodeficiency virus type 1 binds selectively to short RNA transcripts containing the viral transactivation-responsive element (TAR). Sequences sufficient for Tat interaction map to the distal portion of the TAR stem-loop. We show that critical sequences for Tat binding are located in the single-stranded "bulge," but no requirement for specific "loop" sequences could be demonstrated. TAR RNA competed for complex formation, and TAR mutants exhibited up to 10-fold reduced affinity for Tat. Synthetic peptides containing the basic region of Tat bound selectively to TAR RNA and exhibited the same sequence requirements and similar relative affinities for mutant TAR RNA as the intact protein. These results suggest that Tat contains a small RNA-binding domain capable of recognizing TAR and implicate functional relevance for direct Tat-TAR interaction in transactivation.
authors: Department of Virus and Cell Biology, Merck Sharp and Dohme Research Laboratories, West Point, PA 19486.
authors: M G
authors: MG
authors: Cordingley
authors: R L
authors: RL
authors: LaFemina
authors: P L
authors: PL
authors: Callahan
authors: J H
authors: JH
authors: Condra
authors: V V
authors: VV
authors: Sardana
authors: D J
authors: DJ
authors: Graham
authors: T M
authors: TM
authors: Nguyen
authors: K
authors: K
authors: LeGrow
authors: L
authors: L
authors: Gotlib
authors: A J
authors: AJ
authors: Schlabach
mesh_terms: D000595:Amino Acid Sequence; D001667:Binding, Competitive; D004252:DNA Mutational Analysis; D015696:Gene Products, tat / Q000378:metabolism*; D016325:HIV Long Terminal Repeat / Q000235:genetics*; D015497:HIV-1 / Q000235:genetics*; D066298:In Vitro Techniques; D008969:Molecular Sequence Data; D010455:Peptides / Q000138:chemical synthesis / Q000378:metabolism; D012367:RNA, Viral / Q000235:genetics / Q000378:metabolism; D011994:Recombinant Proteins; D012045:Regulatory Sequences, Nucleic Acid; D013329:Structure-Activity Relationship; D054322:tat Gene Products, Human Immunodeficiency Virus
chemical_list: D015696:Gene Products, tat; D010455:Peptides; D012367:RNA, Viral; D011994:Recombinant Proteins; D054322:tat Gene Products, Human Immunodeficiency Virus