Conformation of methyl beta-lactoside bound to the ricin B-chain: interpretation of transferred nuclear Overhauser effects facilitated by spin simulation and selective deuteration.
Spin simulation and selective deuteration have been used to aid in the interpretation of 1D transferred nuclear Overhauser effect (TRNOE) NMR experiments on ricin B-chain/ligand systems. Application of these methods has revealed a change in the conformation of deuterated methyl beta-lactoside upon binding to the ricin B-chain which results in a slight change in glycosidic torsional angels which appear to dominate in the solution conformation. The combination of simulation and experiment also shows an important sensitivity of TRNOE magnitudes to dissociation rate constants and available spin-diffusion pathways for the ricin B-chain/ligand systems under study. The sensitivity to dissociation rates allows determination of rate constants for methyl beta-lactoside and methyl beta-galactoside of 50 and 300 s-1, respectively.
Bevilacqua
V L
VL
Department of Chemistry, Yale University, New Haven, Connecticut 06511.
Thomson
D S
DS
Prestegard
J H
JH
D001665:Binding Sites; D002236:Carbohydrate Conformation; D003903:Deuterium; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D008759:Methylglycosides / Q000378:metabolism*; D015394:Molecular Structure; D012276:Ricin / Q000378:metabolism*
D008759:Methylglycosides; C034207:methyl lactoside; D012276:Ricin; D003903:Deuterium