Differences in DNase I sensitivity and methylation within the human beta-globin gene domain and correlation with expression.
We have analysed the chromatin features of DNA regions encompassing human epsilon, G gamma, A gamma, delta and beta globin structural genes in fetal and adult erythroid cells on the one hand and adult lymphocytes on the other. Highly purified nuclei from these cells were submitted to DNase I digestion and the kinetic data were obtained from the percentage of residual hybridization of defined regions in Southern blots. Our results, as others have shown by different approaches, indicate that the structural genes of the beta-globin cluster are generally more sensitive to DNase I in the erythroid cells than in non-erythroid cells. Thus a domain of DNase I sensitivity related to the committed state is defined. In addition we show that within this DNase-I-sensitive beta cluster domain, individual genes of the cluster are arranged in subdomains of differential DNase I sensitivity, which correlate with their expression status. Furthermore the differential expression of the two fetal genes in the fetal stage is shown to be directly proportional to the degree of hypomethylation of these genes.
Arapinis
C
C
Elion
J
J
Labie
D
D
Krishnamoorthy
R
R
D000328:Adult; D004247:DNA / Q000378:metabolism*; D003850:Deoxyribonuclease I / Q000378:metabolism*; D004912:Erythrocytes / Q000378:metabolism; D005333:Fetus / Q000378:metabolism; D005786:Gene Expression Regulation; D005796:Genes; D005914:Globins / Q000235:genetics*; D006801:Humans; D006868:Hydrolysis; D008214:Lymphocytes / Q000378:metabolism; D008745:Methylation; D009693:Nucleic Acid Hybridization; D010641:Phenotype; D012313:RNA / Q000302:isolation & purification; D014158:Transcription, Genetic
D012313:RNA; D005914:Globins; D004247:DNA; D003850:Deoxyribonuclease I