title: Tryptophan interactions of gramicidin A' channels in lipids: a time-resolved fluorescence study.
abstract: The evolution of the incorporation of cation transport channels into lysolecithin micelles by gramicidin A was followed by measuring the ns time-resolved fluorescence of the tryptophan residues. In all samples, the tryptophan fluorescence could be resolved into three exponentially decaying components. The three decay times ranged from 6 to 8 ns, 1.8 to 3 ns, and 0.3 to 0.8 ns, depending on the emission wavelength. The fractional fluorescence of each component changed with incubation time. The long lifetime component had a reduced contribution to the total fluorescence while the short decay time component increased. The fluorescence spectra could be resolved into three distinct fluorescent components having maxima at 340 nm, 330 nm and 323 nm after 90 min of incubation, and 335 nm, 325 nm and 320 nm after 24 h of incubation. These maxima were, respectively, associated with the long, medium and short decay components. The fluorescence decay behaviour was interpreted as representing three families of tryptophans, the short lifetime component being due to a stacking interaction between tryptophan residues. The variation with incubation time suggests a two-step process in the channel-lipid organization. The first is associated with the conformational change of the polypeptide as it takes up a left-handed helical head-to-head dimer structure in the lipid. The second step is proposed to involve changes originating from membrane assembly and intermolecular interactions between channels as they form hexameric clusters.
mesh_terms: D006096:Gramicidin; D007473:Ion Channels / Q000502:physiology*; D007700:Kinetics; D008244:Lysophosphatidylcholines; D008823:Micelles; D008954:Models, Biological; D011487:Protein Conformation; D013050:Spectrometry, Fluorescence; D014364:Tryptophan
chemical_list: D007473:Ion Channels; D008244:Lysophosphatidylcholines; D008823:Micelles; D006096:Gramicidin; D014364:Tryptophan