title: An RNA secondary structure workbench.
abstract: A multiple approach to the study of RNA secondary structure is described which provides for the independent drawing of structures using base-pairing lists, for the generation of local structures in the form of hairpins, and for the generation of global structures by both Monte Carlo and dynamic programming methodologies. User-adjustable parameters provide for limiting the size of hairpin loops, bulges and inner loops, and constraints can be imposed relative to position-dependent base pairing.
mesh_terms: D000465:Algorithms; D000818:Animals; D001483:Base Sequence; D002645:Chickens; D003196:Computer Graphics; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D009857:Oncogenes; D011381:Programming Languages; D012313:RNA; D012984:Software / Q000379:methods*
chemical_list: D012313:RNA