Prediction of "hot spots" in interleukin-2 based on informational spectrum characteristics of growth-regulating factors. Comparison with experimental data.
The Resonant Recognition Model (RRM) is a theoretical method for analysis of protein and nucleotide sequences, based on the Fourier transform of the numerical representation of sequences. The amplitude spectrum of this transform is designated Informational Spectrum (IS). There are certain common frequencies in IS of growth-regulating factors. These characteristic frequencies may correlate with their roles in cell proliferation and metabolism, and in antitumor activity. IS of IL-2 has prominent characteristics in the main frequency domain of growth factors, frequency domain of antitumor factors, and frequency domain characteristic for IL-2-alpha receptor. By means of the inverse method for these 3 domains, the amino acids in the sequence of human IL-2 that may be relevant to its biological function, the so-called "hot spots", were predicted. The most probable hot spots, obtained in this way, are in the potential binding site of IL-2 to its receptor, which agrees with experimental data.
Cosic
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I
Laboratory for Multidisciplinary Research 180/2, Boris Kidric Institute, Belgrade, Yugoslavia.
Pavlovic
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M
Vojisavljevic
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V
D000595:Amino Acid Sequence; D000818:Animals; D002417:Cattle; D005583:Fourier Analysis; D006801:Humans; D007376:Interleukin-2 / Q000235:genetics* / Q000502:physiology; D051379:Mice; D008957:Models, Genetic; D015375:Receptors, Interleukin-2; D013329:Structure-Activity Relationship
D007376:Interleukin-2; D015375:Receptors, Interleukin-2