title: Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.
abstract: Two genes involved in the degradation of biphenyl were isolated from a gene library of a polychlorinated biphenyl-degrading soil bacterium, Pseudomonas sp. strain KKS102, by using a broad-host-range cosmid vector, pKS13. When a 3.2-kilobase (kb) PstI fragment of a 29-kb cosmid DNA insert was subcloned into pUC18 at the PstI site downstream of the lacZ promoter, Escherichia coli cells carrying this recombinant plasmid expressed 2,3-dihydroxybiphenyl dioxygenase activity. Nucleotide sequencing of the 3.2-kb PstI fragment revealed that there were two open reading frames (ORFI [882 base pairs] and ORFII [834 base pairs], in this gene order). Results of analysis of Tn5 insertion mutants and unidirectional deletion mutants suggested that the ORFI coded for 2,3-dihydroxybiphenyl dioxygenase. When the sequence of ORFI was compared with that of bphC of Pseudomonas pseudoalcaligenes KF707 (K. Furukawa, N. Arima, and T. Miyazaki, J. Bacteriol. 169:427-429, 1987), the homology was 68%, with both strains having the same Shine-Dalgarno sequence. The result of gas chromatography-mass spectrometry analysis of the metabolic product suggested that the ORFII had meta cleavage compound hydrolase activity to produce benzoic acid. DNA sequencing suggested that these two genes were contained in one operon.
authors.affiliation: Department of Agricultural Chemistry, University of Tokyo, Japan.
authors.forename: K
authors.initials: K
authors.lastname: Kimbara
authors.forename: T
authors.initials: T
authors.lastname: Hashimoto
authors.forename: M
authors.initials: M
authors.lastname: Fukuda
authors.forename: T
authors.initials: T
authors.lastname: Koana
authors.forename: M
authors.initials: M
authors.lastname: Takagi
authors.forename: M
authors.initials: M
authors.lastname: Oishi
authors.forename: K
authors.initials: K
authors.lastname: Yano
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D001565:Benzoates / Q000378:metabolism; D019817:Benzoic Acid; D001713:Biphenyl Compounds / Q000378:metabolism*; D015139:Blotting, Southern; D003001:Cloning, Molecular; D004252:DNA Mutational Analysis; D004251:DNA Transposable Elements; D005796:Genes; D005798:Genes, Bacterial; D008969:Molecular Sequence Data; D011078:Polychlorinated Biphenyls / Q000378:metabolism; D011549:Pseudomonas / Q000235:genetics* / Q000378:metabolism; D015183:Restriction Mapping
chemical_list: D001565:Benzoates; D001713:Biphenyl Compounds; D004251:DNA Transposable Elements; D019817:Benzoic Acid; D011078:Polychlorinated Biphenyls