Binding of sulfonamide and acetamide to the active-site Zn2+ in carbonic anhydrase: a theoretical study.
Self-consistent field molecular orbital (SCF MO) calculations at both 4-31G and STO-3G levels have been used to examine the binding conformations of sulfonamide and acetamide compounds to the active site of carbonic anhydrase. The results are as follows: (1) sulfonamide binds to the Zn2+ ion in its deprotonated form through the sulfonamide nitrogen to the fourth coordination site of the metal ion; (2) acetamide as neutral species binds to the basic form of the enzyme through the carbonyl oxygen to the fifth coordination site of the metal ion; and (3) the acetamidate ion binds to the acid form of the enzyme through the amide nitrogen to form a tetracoordinated metal complex with three histidine ligands. Analysis of the effects of individual active-site residues on the binding conformations of these inhibitors suggests that metal alone favors bidentate coordination of sulfonamidate and acetamidate complexes and that electron donation from three histidine ligands to the metal ion determines the formation of a tetracoordinated metal complex, which is further stabilized by the presence of Thr 199, as it receives one hydrogen bond from the sulfonamide NH- or from the acetamide NH- and donates a backbone NH hydrogen bond to a sulfonamide oxygen. The calculated binding conformation of sulfonamide and the hydrogen-bonding interactions between sulfonamide and the enzyme are consistent with the X-ray diffraction study of the AMSulf-HCA II complex. However, no X-ray structures are available for amide-HCA II complexes.(ABSTRACT TRUNCATED AT 250 WORDS)
Liang
J
J
Department of Chemistry, Harvard University, Cambridge, Massachusetts 02138.
Lipscomb
W N
WN
D000081:Acetamides / Q000378:metabolism*; D001665:Binding Sites; D002256:Carbonic Anhydrases / Q000493:pharmacokinetics*; D008956:Models, Chemical; D008968:Molecular Conformation; D013449:Sulfonamides / Q000378:metabolism*; D015032:Zinc / Q000493:pharmacokinetics*
D000081:Acetamides; D013449:Sulfonamides; D002256:Carbonic Anhydrases; D015032:Zinc