Contribution of a single hydroxyl group to transition-state discrimination by adenosine deaminase: evidence for an "entropy trap" mechanism.
Adenosine deaminase was found to bind 6-hydroxy-1,6-dihydropurine ribonucleoside (II), formed by reversible addition of water to purine ribonucleoside (I) in a reaction analogous to formation of a tetrahedral intermediate in substrate deamination, with an apparent Ki value of 3 x 10(-13) M at 20 degrees C. 1,6-Dihydropurine ribonucleoside (IV), synthesized by photolysis of purine ribonucleoside in the presence of NaBH4, exhibited a Ki value of 5.4 x 10-6 M. After correction for differences between the relative free energies of solvation of II and IV, the 6-hydroxyl group of II was estimated to contribute more than 16 kcal to the free energy of binding, approaching the enthalapy of formation of a single hydrogen bond to charged group in the vapor phase. The relatively weak binding of IV and of substrate water suggests that entropic effects, arising from the cooperative action of binding determinants contained within these separate molecules, contribute more than 10 kcal/mol to the free energy of binding of II in which these binding determinants are contained within a single molecule. In free solution, the entropy of reversible hydration of I was evaluated by measuring the temperature dependence of equilibria of protonation of I and of pseudobase formation from I-methylpurinium ribonucleoside as -35 eu, comparable with the entropy of activation for the uncatalyzed hydrolysis of adenosine. In the active site of adenosine deaminase, this thermodynamic obstacle is evidently climbed spontaneously as a result of attractive interactions between the active site and the critical hydroxyl group at the 6-position.(ABSTRACT TRUNCATED AT 250 WORDS)
Kati
W M
WM
Department of Biochemistry, University of North Carolina, Chapel Hill 27514.
Wolfenden
R
R
D000243:Adenosine Deaminase / Q000378:metabolism*; D000818:Animals; D002417:Cattle; D055598:Chemical Phenomena; D002621:Chemistry; D006878:Hydroxides / Q000493:pharmacokinetics*; D017665:Hydroxyl Radical; D007422:Intestines / Q000187:drug effects / Q000201:enzymology*; D015394:Molecular Structure; D009700:Nucleoside Deaminases / Q000378:metabolism*; D011684:Purine Nucleosides / Q000493:pharmacokinetics*; D012263:Ribonucleosides / Q000493:pharmacokinetics*; D013696:Temperature; D013816:Thermodynamics
D006878:Hydroxides; D011684:Purine Nucleosides; D012263:Ribonucleosides; D017665:Hydroxyl Radical; C005248:nebularine; D009700:Nucleoside Deaminases; D000243:Adenosine Deaminase