title: A site-specific endonuclease and co-conversion of flanking exons associated with the mobile td intron of phage T4.
abstract: The product of the td intron open reading frame (ORF) of phage T4 is required for high-frequency transfer of the intervening sequence from intron-plus (In+) to intron-minus (In-) alleles. In vivo studies have demonstrated that the td ORF product targets cleavage of td In- DNA, and that cleavage is correlated with intron inheritance [Quirk et al., Cell 56 (1989) 455-465]. In the present study we show by in vitro synthesis of the td intron ORF product, that the protein possesses endonuclease activity and efficiently cleaves double-stranded DNA at or near the site of intron integration. In addition, we demonstrate that intron insertion is accompanied by co-conversion of the flanking exon sequences. Co-conversion of markers within 50 nt surrounding the site of intron insertion occurred at a high frequency (80-100%), and decreased at greater distance from the intervening sequence. Co-conversion may provide a mechanism for maintaining exon-intron RNA contacts required for accurate splicing of the relocated intron. Cleavage of target DNA by an intron endonuclease and co-conversion of flanking exon sequences are both features associated with mobile introns of eukaryotes, indicating a common mechanism for intron transfer in the eukaryotic and prokaryotic kingdoms.
authors.affiliation: Wadsworth Center for Laboratory and Research, New York State Department of Health, Albany 12201-0509.
authors.forename: D
authors.initials: D
authors.lastname: Bell-Pedersen
authors.forename: S M
authors.initials: SM
authors.lastname: Quirk
authors.forename: M
authors.initials: M
authors.lastname: Aubrey
authors.forename: M
authors.initials: M
authors.lastname: Belfort
mesh_terms: D001483:Base Sequence; D004247:DNA / Q000378:metabolism; D004251:DNA Transposable Elements; D004706:Endodeoxyribonucleases / Q000235:genetics* / Q000502:physiology; D005091:Exons; D005785:Gene Conversion; D015967:Gene Expression Regulation, Viral; D005814:Genes, Viral; D007438:Introns; D008957:Models, Genetic; D012326:RNA Splicing; D013604:T-Phages / Q000201:enzymology / Q000235:genetics*; D015678:Viral Structural Proteins / Q000235:genetics*
chemical_list: D004251:DNA Transposable Elements; D015678:Viral Structural Proteins; D004247:DNA; D004706:Endodeoxyribonucleases