Nuclear Overhauser effect and computational characterization of the beta-spiral of the polypentapeptide of elastin.
The structure of the elastin polypentapeptide, poly(VPGVG), was studied by nuclear Overhauser effect experiments using perdeuterated Val1 and Val4 samples under the condition where intermolecular interactions are absent. More extensive interaction was found between the Val1 gamma CH and Pro2 beta CH protons than between the Val4 gamma CH and Pro2 beta CH protons. The Val1 gamma CH3-Pro2 beta CH interaction does not occur within the same pentamer as previously shown experimentally and as expected from steric considerations. The results are incompatible with the presence of a random chain network in poly(VPGVG) at room temperature but are readily explicable in terms of interturn interactions in a beta-spiral structure. More specifically, the results indicate that the beta-spiral conformation with 2.9 pentamers/turn is more prevalent than that with 2.7 pentamers/turn. Using conformations developed by molecular mechanics calculations, molecular dynamics simulations were carried out to compare the relative energies of these two variants of this class of beta-spiral structures. It was found in vacuo that the structure with 2.9 pentamers/turn is indeed more stable than that of 2.7 pentamers/turn by approximately 1 kcal/mole-pentamer.
Chang
D K
DK
Laboratory of Molecular Biophysics, University of Alabama, Birmingham 35294.
Venkatachalam
C M
CM
Prasad
K U
KU
Urry
D W
DW
D003461:Crystallography; D009682:Magnetic Resonance Spectroscopy; D010455:Peptides; D011487:Protein Conformation
D010455:Peptides; C033943:elastin polypentapeptide