title: Analysis of sequences involved in cowpea mosaic virus RNA replication using site-specific mutants.
abstract: Using a full-length cDNA clone of cowpea mosaic virus (CPMV) B-RNA from which infectious transcripts can be generated, we examined the influence of a sequence of 11 nucleotides, UUUUAUUAAAA, comprising the nucleotides 5883 to 5893 in the 3' noncoding region of B-RNA, on viral RNA replication. This sequence is not only present in B-RNA but also in M-RNA and represents the 7 nucleotides preceding the poly(A) tail and the first four A residues of the poly(A) tail. Replication of B-RNA transcripts derived from a series of mutants in this region was tested in cowpea plants and protoplasts. Only mutant transcripts with minor modifications appeared able to replicate, which indicates that the region has a function in viral RNA replication. In addition, the results suggest the existence of a hairpin loop in this region. Those transcripts with deletions which disturb the putative hairpin structure have decreased specific infectivities. Mutant transcripts reversed stepwise to the wild-type sequence during replication in plants. This observation strengthens the idea that the sequence of 11 nucleotides has a function in viral RNA replication.
authors.affiliation: Department of Molecular Biology, Agricultural University, Wageningen, The Netherlands.
authors.forename: R
authors.initials: R
authors.lastname: Eggen
authors.forename: J
authors.initials: J
authors.lastname: Verver
authors.forename: J
authors.initials: J
authors.lastname: Wellink
authors.forename: K
authors.initials: K
authors.lastname: Pleij
authors.forename: A
authors.initials: A
authors.lastname: van Kammen
authors.forename: R
authors.initials: R
authors.lastname: Goldbach
mesh_terms: D001483:Base Sequence; D003001:Cloning, Molecular; D004274:DNA, Recombinant; D007887:Fabaceae; D008969:Molecular Sequence Data; D009029:Mosaic Viruses / Q000235:genetics* / Q000502:physiology; D009154:Mutation; D009690:Nucleic Acid Conformation; D010946:Plants, Medicinal; D010957:Plasmids; D012367:RNA, Viral / Q000096:biosynthesis* / Q000235:genetics; D014158:Transcription, Genetic; D014779:Virus Replication
chemical_list: D004274:DNA, Recombinant; D012367:RNA, Viral